Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32648.t1 | XP_024634855.1 | 63.8 | 790 | 39 | 3 | 1 | 543 | 1 | 790 | 8.90E-257 | 896 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32648.t1 | Q5UBY2 | 23.5 | 493 | 245 | 12 | 13 | 380 | 27 | 512 | 1.4e-24 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32648.t1 | A0A151RX65 | 43.8 | 698 | 145 | 3 | 1 | 451 | 1 | 698 | 6.6e-145 | 523.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32648.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32648.t1 | MTR_4g102720 | 43.624 | 149 | 47 | 2 | 1 | 145 | 1 | 116 | 1.35e-34 | 130 |
| MS.gene32648.t1 | MTR_7g061980 | 48.673 | 113 | 53 | 1 | 4 | 111 | 7 | 119 | 8.93e-30 | 113 |
| MS.gene32648.t1 | MTR_0402s0040 | 29.474 | 285 | 136 | 10 | 7 | 263 | 26 | 273 | 2.02e-28 | 119 |
| MS.gene32648.t1 | MTR_7g074790 | 40.940 | 149 | 61 | 3 | 2 | 143 | 5 | 133 | 4.16e-28 | 112 |
| MS.gene32648.t1 | MTR_5g039760 | 44.915 | 118 | 59 | 3 | 2 | 113 | 5 | 122 | 1.66e-24 | 101 |
| MS.gene32648.t1 | MTR_5g015480 | 39.516 | 124 | 68 | 3 | 7 | 123 | 56 | 179 | 1.07e-14 | 74.7 |
| MS.gene32648.t1 | MTR_2g099430 | 43.678 | 87 | 44 | 2 | 30 | 111 | 26 | 112 | 2.37e-14 | 70.1 |
| MS.gene32648.t1 | MTR_0337s0060 | 30.282 | 142 | 94 | 3 | 181 | 320 | 14 | 152 | 1.09e-13 | 71.2 |
| MS.gene32648.t1 | MTR_2g070590 | 34.286 | 105 | 62 | 3 | 7 | 104 | 17 | 121 | 1.56e-12 | 65.1 |
| MS.gene32648.t1 | MTR_4g069880 | 45.312 | 64 | 35 | 0 | 2 | 65 | 5 | 68 | 5.15e-12 | 61.6 |
| MS.gene32648.t1 | MTR_6g017200 | 37.975 | 79 | 44 | 2 | 7 | 80 | 58 | 136 | 2.52e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32648.t1 | AT3G22170 | 29.644 | 253 | 171 | 3 | 144 | 390 | 407 | 658 | 2.77e-27 | 117 |
| MS.gene32648.t1 | AT3G22170 | 29.644 | 253 | 171 | 3 | 144 | 390 | 407 | 658 | 2.77e-27 | 117 |
| MS.gene32648.t1 | AT4G38180 | 32.857 | 210 | 133 | 3 | 145 | 350 | 423 | 628 | 1.40e-25 | 112 |
| MS.gene32648.t1 | AT4G38180 | 35.099 | 151 | 89 | 3 | 4 | 145 | 70 | 220 | 2.69e-13 | 73.2 |
| MS.gene32648.t1 | AT4G38170 | 29.439 | 214 | 143 | 3 | 146 | 355 | 189 | 398 | 5.05e-25 | 109 |
| MS.gene32648.t1 | AT4G15090 | 25.836 | 329 | 212 | 5 | 144 | 448 | 398 | 718 | 2.31e-24 | 108 |
| MS.gene32648.t1 | AT4G15090 | 25.836 | 329 | 212 | 5 | 144 | 448 | 398 | 718 | 2.31e-24 | 108 |
| MS.gene32648.t1 | AT4G15090 | 25.836 | 329 | 212 | 5 | 144 | 448 | 398 | 718 | 2.31e-24 | 108 |
| MS.gene32648.t1 | AT4G15090 | 25.836 | 329 | 212 | 5 | 144 | 448 | 398 | 718 | 2.31e-24 | 108 |
| MS.gene32648.t1 | AT4G15090 | 25.836 | 329 | 212 | 5 | 144 | 448 | 398 | 718 | 2.31e-24 | 108 |
| MS.gene32648.t1 | AT1G80010 | 26.848 | 257 | 177 | 6 | 104 | 350 | 400 | 655 | 2.03e-22 | 102 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 342 | 575 | 8.90e-21 | 97.1 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 342 | 575 | 8.90e-21 | 97.1 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 342 | 575 | 9.00e-21 | 97.1 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 342 | 575 | 9.00e-21 | 97.1 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 342 | 575 | 9.00e-21 | 97.1 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 301 | 534 | 9.41e-21 | 97.1 |
| MS.gene32648.t1 | AT5G18960 | 30.806 | 211 | 131 | 6 | 146 | 350 | 521 | 722 | 9.55e-21 | 97.1 |
| MS.gene32648.t1 | AT5G18960 | 30.806 | 211 | 131 | 6 | 146 | 350 | 521 | 722 | 9.55e-21 | 97.1 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 301 | 534 | 9.90e-21 | 96.7 |
| MS.gene32648.t1 | AT2G32250 | 25.941 | 239 | 172 | 2 | 144 | 382 | 342 | 575 | 1.30e-20 | 96.3 |
| MS.gene32648.t1 | AT2G27110 | 28.502 | 207 | 144 | 3 | 145 | 350 | 370 | 573 | 1.77e-20 | 96.3 |
| MS.gene32648.t1 | AT2G27110 | 28.502 | 207 | 144 | 3 | 145 | 350 | 370 | 573 | 1.77e-20 | 96.3 |
| MS.gene32648.t1 | AT2G27110 | 28.502 | 207 | 144 | 3 | 145 | 350 | 225 | 428 | 1.95e-20 | 95.9 |
| MS.gene32648.t1 | AT1G76320 | 29.327 | 208 | 144 | 2 | 143 | 350 | 334 | 538 | 2.60e-20 | 95.5 |
| MS.gene32648.t1 | AT1G76320 | 29.327 | 208 | 144 | 2 | 143 | 350 | 334 | 538 | 2.61e-20 | 95.5 |
| MS.gene32648.t1 | AT1G76320 | 29.327 | 208 | 144 | 2 | 143 | 350 | 334 | 538 | 2.61e-20 | 95.5 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 347 | 565 | 2.74e-20 | 95.5 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 347 | 565 | 2.74e-20 | 95.5 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 290 | 508 | 3.14e-20 | 95.1 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 347 | 565 | 3.27e-20 | 95.1 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 347 | 565 | 3.27e-20 | 95.1 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 347 | 565 | 3.93e-20 | 94.7 |
| MS.gene32648.t1 | AT4G19990 | 31.222 | 221 | 148 | 3 | 145 | 363 | 361 | 579 | 4.37e-20 | 94.7 |
| MS.gene32648.t1 | AT1G76320 | 29.327 | 208 | 144 | 2 | 143 | 350 | 334 | 538 | 5.22e-20 | 94.4 |
| MS.gene32648.t1 | AT3G06250 | 31.754 | 211 | 129 | 6 | 146 | 350 | 497 | 698 | 7.88e-20 | 94.0 |
| MS.gene32648.t1 | AT3G06250 | 31.754 | 211 | 129 | 6 | 146 | 350 | 497 | 698 | 7.88e-20 | 94.0 |
| MS.gene32648.t1 | AT3G06250 | 31.754 | 211 | 129 | 6 | 146 | 350 | 497 | 698 | 7.88e-20 | 94.0 |
| MS.gene32648.t1 | AT1G52520 | 26.697 | 221 | 152 | 3 | 139 | 350 | 413 | 632 | 5.80e-19 | 91.3 |
| MS.gene32648.t1 | AT5G28530 | 23.016 | 252 | 182 | 5 | 104 | 350 | 371 | 615 | 1.03e-13 | 74.3 |
| MS.gene32648.t1 | AT5G28530 | 23.016 | 252 | 182 | 5 | 104 | 350 | 308 | 552 | 1.25e-13 | 73.9 |
| MS.gene32648.t1 | AT1G10240 | 25.806 | 217 | 146 | 5 | 139 | 350 | 395 | 601 | 2.33e-13 | 73.6 |
| MS.gene32648.t1 | AT1G10240 | 25.806 | 217 | 146 | 5 | 139 | 350 | 395 | 601 | 2.33e-13 | 73.6 |
| MS.gene32648.t1 | AT5G28530 | 23.413 | 252 | 177 | 6 | 104 | 350 | 371 | 611 | 3.77e-13 | 72.8 |
| MS.gene32648.t1 | AT5G28530 | 23.413 | 252 | 177 | 6 | 104 | 350 | 371 | 611 | 3.77e-13 | 72.8 |
| MS.gene32648.t1 | AT5G28530 | 23.413 | 252 | 177 | 6 | 104 | 350 | 308 | 548 | 4.46e-13 | 72.4 |
Find 89 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCACCTCTTTAAAATATA+AGG | 0.176322 | 3.1:+84660951 | None:intergenic |
| TCTGAACACCATACTTTATA+AGG | 0.212221 | 3.1:+84661522 | None:intergenic |
| TTGAAGATGCTTGGGAGTTC+TGG | 0.234863 | 3.1:-84662551 | MS.gene32648:CDS |
| TTACGAAACTCGACAGCTTC+TGG | 0.243237 | 3.1:+84660792 | None:intergenic |
| GACAACATATGAGTTGTTTC+TGG | 0.253501 | 3.1:+84662285 | None:intergenic |
| CTGAAAACCATATCAACTTT+TGG | 0.256089 | 3.1:+84662579 | None:intergenic |
| TATCTCTTTAATATTGTTAG+AGG | 0.283905 | 3.1:+84660692 | None:intergenic |
| TATTGCCAAGAAAAGGAATA+TGG | 0.289005 | 3.1:-84661108 | MS.gene32648:CDS |
| CATATAGGTGCACTTGTAAT+TGG | 0.302297 | 3.1:+84660301 | None:intergenic |
| ATGGTTCAGTTTCTTCTTGT+AGG | 0.306704 | 3.1:-84662467 | MS.gene32648:CDS |
| ACCTTGCTTCACAATTGTTC+TGG | 0.307390 | 3.1:+84662382 | None:intergenic |
| CTTAAAAGTCTTCATTCATA+TGG | 0.313141 | 3.1:-84660994 | MS.gene32648:CDS |
| TTGGAAGCCAAAAGTTGATA+TGG | 0.315145 | 3.1:-84662586 | MS.gene32648:CDS |
| TTGGATTCTTTGTGCTTGTC+TGG | 0.326800 | 3.1:+84662414 | None:intergenic |
| CTTTGCGCGTTTCTTTCTCT+TGG | 0.329292 | 3.1:+84660569 | None:intergenic |
| ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 3.1:-84661443 | MS.gene32648:CDS |
| ACGGTGGTAAGGTTGGATTC+GGG | 0.338362 | 3.1:-84662521 | MS.gene32648:CDS |
| CAATTACAAGTGCACCTATA+TGG | 0.342061 | 3.1:-84660300 | MS.gene32648:CDS |
| TGTACAATATAAAGGAGAAA+TGG | 0.347671 | 3.1:-84661478 | MS.gene32648:CDS |
| TGTCGTAAATTTGAGAGCTT+TGG | 0.348811 | 3.1:-84661035 | MS.gene32648:CDS |
| ACATCCCTCCTTATAAAGTA+TGG | 0.358569 | 3.1:-84661530 | MS.gene32648:CDS |
| TGTTATTAGCTAACCATAGA+TGG | 0.362982 | 3.1:+84660256 | None:intergenic |
| GATGGAACATCTAGTCAATT+TGG | 0.363982 | 3.1:-84660165 | MS.gene32648:CDS |
| TGCATACAATCAACCATCTA+TGG | 0.365263 | 3.1:-84660269 | MS.gene32648:intron |
| TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 3.1:-84661442 | MS.gene32648:CDS |
| TACGGTGGTAAGGTTGGATT+CGG | 0.368578 | 3.1:-84662522 | MS.gene32648:CDS |
| ATGGCAAGTGACCTTCGATT+TGG | 0.384310 | 3.1:-84661081 | MS.gene32648:CDS |
| ATTGTTCTGGTCTCTAGTCT+TGG | 0.387348 | 3.1:+84662395 | None:intergenic |
| GCAAAGAATGTACAATATAA+AGG | 0.392434 | 3.1:-84661486 | MS.gene32648:CDS |
| CAGTAGCTTTGAAGATGCTT+GGG | 0.400724 | 3.1:-84662559 | MS.gene32648:CDS |
| GATACAAGATGAATGAAGAT+TGG | 0.401677 | 3.1:-84662605 | None:intergenic |
| TAAGGAAGTTGCTGATGAAT+TGG | 0.406007 | 3.1:-84660772 | MS.gene32648:CDS |
| TATGCATTATTAAGCCATAT+AGG | 0.412953 | 3.1:+84660286 | None:intergenic |
| TCAGTAGCTTTGAAGATGCT+TGG | 0.418263 | 3.1:-84662560 | MS.gene32648:CDS |
| GTACAATATAAAGGAGAAAT+GGG | 0.433816 | 3.1:-84661477 | MS.gene32648:CDS |
| GATGGTGCAACACAAGTAAA+GGG | 0.435850 | 3.1:-84660657 | MS.gene32648:CDS |
| GTAAGGTTGGATTCGGGGTG+AGG | 0.436672 | 3.1:-84662515 | MS.gene32648:CDS |
| AAGAACAATTTGAAGATGGT+TGG | 0.449713 | 3.1:-84661553 | MS.gene32648:CDS |
| GTTCAAAACGTTGGAAAGGT+TGG | 0.454209 | 3.1:-84660608 | MS.gene32648:CDS |
| CTTATGTTATTGCCAAGAAA+AGG | 0.457771 | 3.1:-84661115 | MS.gene32648:CDS |
| AGGTTTGTTTGCTGCAAAGA+AGG | 0.468354 | 3.1:-84662447 | MS.gene32648:CDS |
| TGATGGTGCAACACAAGTAA+AGG | 0.471729 | 3.1:-84660658 | MS.gene32648:CDS |
| GAATACGAGTTCTTCAGTCT+TGG | 0.477905 | 3.1:+84661260 | None:intergenic |
| TTCACAAATTCAAGAACCTA+TGG | 0.484743 | 3.1:-84660538 | MS.gene32648:intron |
| ACATTGTAAATCACTAATGT+TGG | 0.488437 | 3.1:+84660342 | None:intergenic |
| TTCAAAACGTTGGAAAGGTT+GGG | 0.489068 | 3.1:-84660607 | MS.gene32648:CDS |
| TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 3.1:-84662540 | MS.gene32648:CDS |
| CTTGTAATTGGCGATGCATA+TGG | 0.492051 | 3.1:+84660313 | None:intergenic |
| GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 3.1:-84662349 | MS.gene32648:CDS |
| CTGGAAAACTTACGGTGGTA+AGG | 0.495710 | 3.1:-84662532 | MS.gene32648:CDS |
| CAGGCCTCCATTCAAGTCTC+TGG | 0.496457 | 3.1:+84660023 | None:intergenic |
| CTCTTTAAAATATAAGGCTC+AGG | 0.500537 | 3.1:+84660957 | None:intergenic |
| GAGATATCAAGTACTAATGA+TGG | 0.502322 | 3.1:-84660675 | MS.gene32648:CDS |
| GATGAAGAACAATTTGAAGA+TGG | 0.510431 | 3.1:-84661557 | MS.gene32648:CDS |
| TTCTTGAATTTGTGAAGCAG+TGG | 0.516062 | 3.1:+84660545 | None:intergenic |
| ATTGCCAAGAAAAGGAATAT+GGG | 0.518068 | 3.1:-84661107 | MS.gene32648:CDS |
| AGAAAAGGAATATGGGAGAA+TGG | 0.522592 | 3.1:-84661100 | MS.gene32648:CDS |
| AATAGTAGGAGTATAAAGCT+TGG | 0.523378 | 3.1:+84661217 | None:intergenic |
| ATAAGTAGTGAACAAGTGAA+TGG | 0.530525 | 3.1:-84660717 | MS.gene32648:CDS |
| AGGTTGGGTAGAAACGAAAC+TGG | 0.532288 | 3.1:-84660592 | MS.gene32648:CDS |
| AACAATTGTGAAGCAAGGTT+AGG | 0.534549 | 3.1:-84662378 | MS.gene32648:CDS |
| AAAACTTACGGTGGTAAGGT+TGG | 0.535426 | 3.1:-84662528 | MS.gene32648:CDS |
| CGGTGGTAAGGTTGGATTCG+GGG | 0.537232 | 3.1:-84662520 | MS.gene32648:CDS |
| CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 3.1:+84662206 | None:intergenic |
| GTAGAAGAACAAAGCTAAGC+AGG | 0.541747 | 3.1:-84660440 | MS.gene32648:intron |
| TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 3.1:-84662360 | MS.gene32648:CDS |
| AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 3.1:-84661325 | MS.gene32648:CDS |
| AAGGGGTTTAAGAACAAAGA+AGG | 0.557368 | 3.1:-84660639 | MS.gene32648:CDS |
| GATGGTACCAGAGACTTGAA+TGG | 0.557463 | 3.1:-84660030 | MS.gene32648:CDS |
| AAGAACAAAGAAGGTCCAAA+GGG | 0.561141 | 3.1:-84660630 | MS.gene32648:CDS |
| GCAAATGTAACTCGTGGTTG+TGG | 0.569974 | 3.1:+84662307 | None:intergenic |
| TTATAGGAGCAACTTGATGA+TGG | 0.570385 | 3.1:-84660048 | MS.gene32648:intron |
| GAACACCATACTTTATAAGG+AGG | 0.576736 | 3.1:+84661525 | None:intergenic |
| TAAGAACAAAGAAGGTCCAA+AGG | 0.577271 | 3.1:-84660631 | MS.gene32648:CDS |
| AAGGGTTCAAAACGTTGGAA+AGG | 0.583511 | 3.1:-84660612 | MS.gene32648:CDS |
| GTCCAAAGGGTTCAAAACGT+TGG | 0.588871 | 3.1:-84660617 | MS.gene32648:CDS |
| ACCAGAACAATTGTGAAGCA+AGG | 0.589043 | 3.1:-84662383 | MS.gene32648:CDS |
| TTTATTAGGATCGTCACAGA+AGG | 0.594701 | 3.1:-84660825 | MS.gene32648:intron |
| AACACCATACTTTATAAGGA+GGG | 0.603443 | 3.1:+84661526 | None:intergenic |
| AGAAGCTGTCGAGTTTCGTA+AGG | 0.604501 | 3.1:-84660790 | MS.gene32648:CDS |
| ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 3.1:-84662225 | MS.gene32648:CDS |
| ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 3.1:-84662212 | MS.gene32648:CDS |
| TTTCTGGCAAATGTAACTCG+TGG | 0.662245 | 3.1:+84662301 | None:intergenic |
| CAAACAACTCATACTCACGT+TGG | 0.665525 | 3.1:+84661183 | None:intergenic |
| AGCATGCTTTGTGAAAAGCA+TGG | 0.679180 | 3.1:-84661159 | MS.gene32648:CDS |
| ATGGTGCAACACAAGTAAAG+GGG | 0.679306 | 3.1:-84660656 | MS.gene32648:CDS |
| AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 3.1:-84662364 | MS.gene32648:CDS |
| GGTACCAGAGACTTGAATGG+AGG | 0.689295 | 3.1:-84660027 | MS.gene32648:CDS |
| GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 3.1:-84662537 | MS.gene32648:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTAATAATACCAT+AGG | + | chr3.1:84662098-84662117 | None:intergenic | 10.0% |
| !!! | TATTAAAAATTTTATGAGTA+AGG | - | chr3.1:84661236-84661255 | MS.gene32648:CDS | 10.0% |
| !!! | AATTATTTTGGTTTTTATGT+AGG | - | chr3.1:84662424-84662443 | MS.gene32648:CDS | 15.0% |
| !!! | ACTTGCATTTTTTAAATTAT+AGG | - | chr3.1:84662553-84662572 | MS.gene32648:CDS | 15.0% |
| !!! | ATTATTTTGGTTTTTATGTA+GGG | - | chr3.1:84662425-84662444 | MS.gene32648:CDS | 15.0% |
| !!! | GTTTAGTGTTTAAATTATTT+TGG | - | chr3.1:84662412-84662431 | MS.gene32648:CDS | 15.0% |
| !! | AAAAAAAAGAGAAAGAAGTT+TGG | - | chr3.1:84660513-84660532 | MS.gene32648:intron | 20.0% |
| !! | TATCTCTTTAATATTGTTAG+AGG | + | chr3.1:84661928-84661947 | None:intergenic | 20.0% |
| !! | TTAAACACTAAACATAGTTA+AGG | + | chr3.1:84662405-84662424 | None:intergenic | 20.0% |
| !!! | TTGATTGATTACAGTTATTT+TGG | - | chr3.1:84660667-84660686 | MS.gene32648:CDS | 20.0% |
| ! | ACACTTAGGAAATTTAATGA+AGG | - | chr3.1:84660987-84661006 | MS.gene32648:CDS | 25.0% |
| ! | ACATTGTAAATCACTAATGT+TGG | + | chr3.1:84662278-84662297 | None:intergenic | 25.0% |
| ! | ACTTAGGAAATTTAATGAAG+GGG | - | chr3.1:84660989-84661008 | MS.gene32648:CDS | 25.0% |
| ! | AGATTATACACACAGAAAAA+TGG | - | chr3.1:84660127-84660146 | MS.gene32648:intron | 25.0% |
| ! | CAAAATGGAATTAAACACTT+AGG | - | chr3.1:84660973-84660992 | MS.gene32648:CDS | 25.0% |
| ! | CACGAAAAAAAGGAATATAA+AGG | + | chr3.1:84662158-84662177 | None:intergenic | 25.0% |
| ! | CACTTAGGAAATTTAATGAA+GGG | - | chr3.1:84660988-84661007 | MS.gene32648:CDS | 25.0% |
| ! | CTTAAAAGTCTTCATTCATA+TGG | - | chr3.1:84661623-84661642 | MS.gene32648:intron | 25.0% |
| ! | GCAAAGAATGTACAATATAA+AGG | - | chr3.1:84661131-84661150 | MS.gene32648:CDS | 25.0% |
| ! | GTACAATATAAAGGAGAAAT+GGG | - | chr3.1:84661140-84661159 | MS.gene32648:CDS | 25.0% |
| ! | TATGCATTATTAAGCCATAT+AGG | + | chr3.1:84662334-84662353 | None:intergenic | 25.0% |
| ! | TGGAATAAGTCAAAAATAGT+AGG | + | chr3.1:84661417-84661436 | None:intergenic | 25.0% |
| ! | TGTACAATATAAAGGAGAAA+TGG | - | chr3.1:84661139-84661158 | MS.gene32648:CDS | 25.0% |
| !! | AAATTTTATGAGTAAGGACT+TGG | - | chr3.1:84661242-84661261 | MS.gene32648:CDS | 25.0% |
| !!! | TAGTTTTACTAGCTTATTGA+TGG | - | chr3.1:84662481-84662500 | MS.gene32648:CDS | 25.0% |
| AACACCATACTTTATAAGGA+GGG | + | chr3.1:84661094-84661113 | None:intergenic | 30.0% | |
| AAGAACAATTTGAAGATGGT+TGG | - | chr3.1:84661064-84661083 | MS.gene32648:CDS | 30.0% | |
| AAGATGTTGTAGAAGAAAAG+CGG | - | chr3.1:84661292-84661311 | MS.gene32648:CDS | 30.0% | |
| AGGTTTCCAAAAATGTAATG+AGG | - | chr3.1:84662197-84662216 | MS.gene32648:CDS | 30.0% | |
| AGTAGAGCTTAACAAACTAT+TGG | - | chr3.1:84661702-84661721 | MS.gene32648:intron | 30.0% | |
| ATAAGTAGTGAACAAGTGAA+TGG | - | chr3.1:84661900-84661919 | MS.gene32648:intron | 30.0% | |
| ATGAAGAAGACTTTGACATT+AGG | - | chr3.1:84661174-84661193 | MS.gene32648:CDS | 30.0% | |
| ATGGTGTTCAGAAAAATGAT+TGG | - | chr3.1:84661106-84661125 | MS.gene32648:CDS | 30.0% | |
| ATTGCCAAGAAAAGGAATAT+GGG | - | chr3.1:84661510-84661529 | MS.gene32648:CDS | 30.0% | |
| ATTTCCTTATAACATTGTGC+TGG | + | chr3.1:84661762-84661781 | None:intergenic | 30.0% | |
| CTTAGGAAATTTAATGAAGG+GGG | - | chr3.1:84660990-84661009 | MS.gene32648:CDS | 30.0% | |
| CTTATGTTATTGCCAAGAAA+AGG | - | chr3.1:84661502-84661521 | MS.gene32648:CDS | 30.0% | |
| GAGATATCAAGTACTAATGA+TGG | - | chr3.1:84661942-84661961 | MS.gene32648:intron | 30.0% | |
| GATGAAGAACAATTTGAAGA+TGG | - | chr3.1:84661060-84661079 | MS.gene32648:CDS | 30.0% | |
| GATTTACTGAGTAAAGAAGT+AGG | - | chr3.1:84660437-84660456 | MS.gene32648:CDS | 30.0% | |
| TACTGATCAAGACAAATCAA+TGG | - | chr3.1:84660888-84660907 | MS.gene32648:intron | 30.0% | |
| TATACACACAGAAAAATGGA+TGG | - | chr3.1:84660131-84660150 | MS.gene32648:intron | 30.0% | |
| TATTGCCAAGAAAAGGAATA+TGG | - | chr3.1:84661509-84661528 | MS.gene32648:CDS | 30.0% | |
| TCTGAACACCATACTTTATA+AGG | + | chr3.1:84661098-84661117 | None:intergenic | 30.0% | |
| TGAAGAAGACTTTGACATTA+GGG | - | chr3.1:84661175-84661194 | MS.gene32648:CDS | 30.0% | |
| TGATCAGTAAAAACTGTTTG+AGG | + | chr3.1:84660877-84660896 | None:intergenic | 30.0% | |
| TGTTATTAGCTAACCATAGA+TGG | + | chr3.1:84662364-84662383 | None:intergenic | 30.0% | |
| TGTTCTTCTACACGAAAAAA+AGG | + | chr3.1:84662168-84662187 | None:intergenic | 30.0% | |
| TTCACAAATTCAAGAACCTA+TGG | - | chr3.1:84662079-84662098 | MS.gene32648:intron | 30.0% | |
| TTTCCAAAAATGTAATGAGG+CGG | - | chr3.1:84662200-84662219 | MS.gene32648:CDS | 30.0% | |
| ! | AATAGTAGGAGTATAAAGCT+TGG | + | chr3.1:84661403-84661422 | None:intergenic | 30.0% |
| ! | CTGAAAACCATATCAACTTT+TGG | + | chr3.1:84660041-84660060 | None:intergenic | 30.0% |
| ! | GACTTTAAGAAATGCATGTA+TGG | - | chr3.1:84661030-84661049 | MS.gene32648:CDS | 30.0% |
| ! | TGTATTCTTTTCCAAATCGA+AGG | + | chr3.1:84661550-84661569 | None:intergenic | 30.0% |
| !! | AGCCTTATATTTTAAAGAGG+TGG | - | chr3.1:84661664-84661683 | MS.gene32648:intron | 30.0% |
| !! | CTCTTTAAAATATAAGGCTC+AGG | + | chr3.1:84661663-84661682 | None:intergenic | 30.0% |
| !! | CTGAGCCTTATATTTTAAAG+AGG | - | chr3.1:84661661-84661680 | MS.gene32648:intron | 30.0% |
| !! | GTCCACCTCTTTAAAATATA+AGG | + | chr3.1:84661669-84661688 | None:intergenic | 30.0% |
| !!! | TCTTCAGTCTTGGAATTTTT+TGG | + | chr3.1:84661350-84661369 | None:intergenic | 30.0% |
| AACAATTGTGAAGCAAGGTT+AGG | - | chr3.1:84660239-84660258 | MS.gene32648:intron | 35.0% | |
| AAGAACAAAGAAGGTCCAAA+GGG | - | chr3.1:84661987-84662006 | MS.gene32648:intron | 35.0% | |
| AAGGGGTTTAAGAACAAAGA+AGG | - | chr3.1:84661978-84661997 | MS.gene32648:intron | 35.0% | |
| AAGGTTAGGACTTAAGAATG+TGG | - | chr3.1:84660253-84660272 | MS.gene32648:intron | 35.0% | |
| ACATCCCTCCTTATAAAGTA+TGG | - | chr3.1:84661087-84661106 | MS.gene32648:CDS | 35.0% | |
| AGAAAAGGAATATGGGAGAA+TGG | - | chr3.1:84661517-84661536 | MS.gene32648:CDS | 35.0% | |
| AGAAAGAAGTTTGGTACAAG+GGG | - | chr3.1:84660522-84660541 | MS.gene32648:intron | 35.0% | |
| AGAGAAAGAAGTTTGGTACA+AGG | - | chr3.1:84660520-84660539 | MS.gene32648:intron | 35.0% | |
| ATCTCCAGCACAATGTTATA+AGG | - | chr3.1:84661755-84661774 | MS.gene32648:intron | 35.0% | |
| ATGGTTCAGTTTCTTCTTGT+AGG | - | chr3.1:84660150-84660169 | MS.gene32648:CDS | 35.0% | |
| CAAAAATTATAGCTCCTCGA+TGG | + | chr3.1:84660771-84660790 | None:intergenic | 35.0% | |
| CAATATCTAGCTGATAAGCA+TGG | + | chr3.1:84660606-84660625 | None:intergenic | 35.0% | |
| CAATTACAAGTGCACCTATA+TGG | - | chr3.1:84662317-84662336 | MS.gene32648:CDS | 35.0% | |
| CATATAGGTGCACTTGTAAT+TGG | + | chr3.1:84662319-84662338 | None:intergenic | 35.0% | |
| GAACACCATACTTTATAAGG+AGG | + | chr3.1:84661095-84661114 | None:intergenic | 35.0% | |
| GAATGTGGATGGAAAATTGA+TGG | - | chr3.1:84660268-84660287 | MS.gene32648:intron | 35.0% | |
| GAGAAAGAAGTTTGGTACAA+GGG | - | chr3.1:84660521-84660540 | MS.gene32648:intron | 35.0% | |
| GATGGAACATCTAGTCAATT+TGG | - | chr3.1:84662452-84662471 | MS.gene32648:CDS | 35.0% | |
| TAAGAACAAAGAAGGTCCAA+AGG | - | chr3.1:84661986-84662005 | MS.gene32648:intron | 35.0% | |
| TAAGGAAGTTGCTGATGAAT+TGG | - | chr3.1:84661845-84661864 | MS.gene32648:intron | 35.0% | |
| TAGTCATGTTGTAGAAGACT+TGG | - | chr3.1:84661728-84661747 | MS.gene32648:intron | 35.0% | |
| TGATAAGCATGGTAGAAAGT+TGG | + | chr3.1:84660595-84660614 | None:intergenic | 35.0% | |
| TGCATACAATCAACCATCTA+TGG | - | chr3.1:84662348-84662367 | MS.gene32648:CDS | 35.0% | |
| TGTCGTAAATTTGAGAGCTT+TGG | - | chr3.1:84661582-84661601 | MS.gene32648:intron | 35.0% | |
| TTACTGAGTAAAGAAGTAGG+AGG | - | chr3.1:84660440-84660459 | MS.gene32648:intron | 35.0% | |
| TTAGGACTTAAGAATGTGGA+TGG | - | chr3.1:84660257-84660276 | MS.gene32648:intron | 35.0% | |
| TTATAGGAGCAACTTGATGA+TGG | - | chr3.1:84662569-84662588 | MS.gene32648:CDS | 35.0% | |
| TTCAAAACGTTGGAAAGGTT+GGG | - | chr3.1:84662010-84662029 | MS.gene32648:intron | 35.0% | |
| TTCCAAAAATGTAATGAGGC+GGG | - | chr3.1:84662201-84662220 | MS.gene32648:CDS | 35.0% | |
| TTCTTGAATTTGTGAAGCAG+TGG | + | chr3.1:84662075-84662094 | None:intergenic | 35.0% | |
| TTTATTAGGATCGTCACAGA+AGG | - | chr3.1:84661792-84661811 | MS.gene32648:intron | 35.0% | |
| ! | AAATTTGTCCCCGCTTTATT+AGG | - | chr3.1:84661778-84661797 | MS.gene32648:intron | 35.0% |
| ! | ATCAGATCACCAATGTGTTT+TGG | - | chr3.1:84660629-84660648 | MS.gene32648:CDS | 35.0% |
| ! | CATCGAGGAGCTATAATTTT+TGG | - | chr3.1:84660769-84660788 | MS.gene32648:CDS | 35.0% |
| ! | GACAACATATGAGTTGTTTC+TGG | + | chr3.1:84660335-84660354 | None:intergenic | 35.0% |
| ! | TCAGATCACCAATGTGTTTT+GGG | - | chr3.1:84660630-84660649 | MS.gene32648:CDS | 35.0% |
| ! | TTCTCCCATATTCCTTTTCT+TGG | + | chr3.1:84661517-84661536 | None:intergenic | 35.0% |
| !! | TTGGAAGCCAAAAGTTGATA+TGG | - | chr3.1:84660031-84660050 | MS.gene32648:CDS | 35.0% |
| !!! | ATTGATGGTGCATGATTTTG+TGG | - | chr3.1:84660283-84660302 | MS.gene32648:CDS | 35.0% |
| AAAACTTACGGTGGTAAGGT+TGG | - | chr3.1:84660089-84660108 | MS.gene32648:intron | 40.0% | |
| AAATTATAGCTCCTCGATGG+TGG | + | chr3.1:84660768-84660787 | None:intergenic | 40.0% | |
| AAGGGTTCAAAACGTTGGAA+AGG | - | chr3.1:84662005-84662024 | MS.gene32648:intron | 40.0% | |
| AATCCTGAGATGATTGCTAG+TGG | + | chr3.1:84660742-84660761 | None:intergenic | 40.0% | |
| ACATAAACCATGGTAAGCTC+CGG | + | chr3.1:84660938-84660957 | None:intergenic | 40.0% | |
| ACCAGAACAATTGTGAAGCA+AGG | - | chr3.1:84660234-84660253 | MS.gene32648:intron | 40.0% | |
| ACCTTGCTTCACAATTGTTC+TGG | + | chr3.1:84660238-84660257 | None:intergenic | 40.0% | |
| AGCATGCTTTGTGAAAAGCA+TGG | - | chr3.1:84661458-84661477 | MS.gene32648:CDS | 40.0% | |
| ATGGTGCAACACAAGTAAAG+GGG | - | chr3.1:84661961-84661980 | MS.gene32648:intron | 40.0% | |
| ATTGTTCTGGTCTCTAGTCT+TGG | + | chr3.1:84660225-84660244 | None:intergenic | 40.0% | |
| CAAACAACTCATACTCACGT+TGG | + | chr3.1:84661437-84661456 | None:intergenic | 40.0% | |
| CTGTGACGATCCTAATAAAG+CGG | + | chr3.1:84661791-84661810 | None:intergenic | 40.0% | |
| CTTACCATGGTTTATGTACG+TGG | - | chr3.1:84660941-84660960 | MS.gene32648:intron | 40.0% | |
| CTTGTAATTGGCGATGCATA+TGG | + | chr3.1:84662307-84662326 | None:intergenic | 40.0% | |
| GAATACGAGTTCTTCAGTCT+TGG | + | chr3.1:84661360-84661379 | None:intergenic | 40.0% | |
| GATGGTGCAACACAAGTAAA+GGG | - | chr3.1:84661960-84661979 | MS.gene32648:intron | 40.0% | |
| GTAGAAGAACAAAGCTAAGC+AGG | - | chr3.1:84662177-84662196 | MS.gene32648:intron | 40.0% | |
| GTTCAAAACGTTGGAAAGGT+TGG | - | chr3.1:84662009-84662028 | MS.gene32648:intron | 40.0% | |
| TGTGACGATCCTAATAAAGC+GGG | + | chr3.1:84661790-84661809 | None:intergenic | 40.0% | |
| TTGGATTCTTTGTGCTTGTC+TGG | + | chr3.1:84660206-84660225 | None:intergenic | 40.0% | |
| ! | AGGTTTGTTTGCTGCAAAGA+AGG | - | chr3.1:84660170-84660189 | MS.gene32648:CDS | 40.0% |
| ! | ATCCCGCCTCATTACATTTT+TGG | + | chr3.1:84662206-84662225 | None:intergenic | 40.0% |
| ! | ATTGAACTAGCTGATAGTGC+CGG | - | chr3.1:84660392-84660411 | MS.gene32648:CDS | 40.0% |
| ! | CGATTTCCTTTGTTGTACAC+CGG | + | chr3.1:84660414-84660433 | None:intergenic | 40.0% |
| ! | GTTTTTATGTAGGGAGACGA+TGG | - | chr3.1:84662434-84662453 | MS.gene32648:CDS | 40.0% |
| ! | TGATGGTGCAACACAAGTAA+AGG | - | chr3.1:84661959-84661978 | MS.gene32648:intron | 40.0% |
| ! | TTTCTGGCAAATGTAACTCG+TGG | + | chr3.1:84660319-84660338 | None:intergenic | 40.0% |
| !! | CAGTAGCTTTGAAGATGCTT+GGG | - | chr3.1:84660058-84660077 | MS.gene32648:intron | 40.0% |
| !! | TCAGTAGCTTTGAAGATGCT+TGG | - | chr3.1:84660057-84660076 | MS.gene32648:intron | 40.0% |
| !! | TGGGAGTTCTGGAAAACTTA+CGG | - | chr3.1:84660077-84660096 | MS.gene32648:intron | 40.0% |
| !! | TTCCAACGTTTTGAACCCTT+TGG | + | chr3.1:84662005-84662024 | None:intergenic | 40.0% |
| AAACTGCTGAGTCATACGAG+TGG | - | chr3.1:84660812-84660831 | MS.gene32648:CDS | 45.0% | |
| AAGAAGTTTGGTACAAGGGG+AGG | - | chr3.1:84660525-84660544 | MS.gene32648:intron | 45.0% | |
| ACGTGGCACTTGATGCAAAA+TGG | - | chr3.1:84660958-84660977 | MS.gene32648:CDS | 45.0% | |
| AGAAGCTGTCGAGTTTCGTA+AGG | - | chr3.1:84661827-84661846 | MS.gene32648:intron | 45.0% | |
| AGACCACTAGCAATCATCTC+AGG | - | chr3.1:84660736-84660755 | MS.gene32648:CDS | 45.0% | |
| AGCATCTGCCCAAAACACAT+TGG | + | chr3.1:84660641-84660660 | None:intergenic | 45.0% | |
| AGGTTGGGTAGAAACGAAAC+TGG | - | chr3.1:84662025-84662044 | MS.gene32648:intron | 45.0% | |
| AGTAGGAGGCAGAACTAACT+TGG | - | chr3.1:84660454-84660473 | MS.gene32648:intron | 45.0% | |
| AGTGCCACGTACATAAACCA+TGG | + | chr3.1:84660948-84660967 | None:intergenic | 45.0% | |
| ATGGCAAGTGACCTTCGATT+TGG | - | chr3.1:84661536-84661555 | MS.gene32648:CDS | 45.0% | |
| CATAAACCATGGTAAGCTCC+GGG | + | chr3.1:84660937-84660956 | None:intergenic | 45.0% | |
| CTGGAAAACTTACGGTGGTA+AGG | - | chr3.1:84660085-84660104 | MS.gene32648:intron | 45.0% | |
| CTTTGCGCGTTTCTTTCTCT+TGG | + | chr3.1:84662051-84662070 | None:intergenic | 45.0% | |
| GATGGTACCAGAGACTTGAA+TGG | - | chr3.1:84662587-84662606 | MS.gene32648:CDS | 45.0% | |
| GCAAATGTAACTCGTGGTTG+TGG | + | chr3.1:84660313-84660332 | None:intergenic | 45.0% | |
| GTAGGAGGCAGAACTAACTT+GGG | - | chr3.1:84660455-84660474 | MS.gene32648:intron | 45.0% | |
| GTCCAAAGGGTTCAAAACGT+TGG | - | chr3.1:84662000-84662019 | MS.gene32648:intron | 45.0% | |
| GTGACGATCCTAATAAAGCG+GGG | + | chr3.1:84661789-84661808 | None:intergenic | 45.0% | |
| TACGGTGGTAAGGTTGGATT+CGG | - | chr3.1:84660095-84660114 | MS.gene32648:intron | 45.0% | |
| TCAGGATTTAACCACCATCG+AGG | - | chr3.1:84660754-84660773 | MS.gene32648:CDS | 45.0% | |
| TTACGAAACTCGACAGCTTC+TGG | + | chr3.1:84661828-84661847 | None:intergenic | 45.0% | |
| TTGAAGATGCTTGGGAGTTC+TGG | - | chr3.1:84660066-84660085 | MS.gene32648:intron | 45.0% | |
| ! | AATGGCAAAAGCGTAAGCTG+AGG | - | chr3.1:84660906-84660925 | MS.gene32648:intron | 45.0% |
| !! | ATAGTGCCGGTGTACAACAA+AGG | - | chr3.1:84660405-84660424 | MS.gene32648:CDS | 45.0% |
| !! | ATGTGTTTTGGGCAGATGCT+AGG | - | chr3.1:84660641-84660660 | MS.gene32648:CDS | 45.0% |
| !! | GAGTTCTGGAAAACTTACGG+TGG | - | chr3.1:84660080-84660099 | MS.gene32648:intron | 45.0% |
| ACGGTGGTAAGGTTGGATTC+GGG | - | chr3.1:84660096-84660115 | MS.gene32648:intron | 50.0% | |
| GGTACCAGAGACTTGAATGG+AGG | - | chr3.1:84662590-84662609 | MS.gene32648:CDS | 50.0% | |
| AGTTTGGTACAAGGGGAGGC+TGG | - | chr3.1:84660529-84660548 | MS.gene32648:intron | 55.0% | |
| CAGGCCTCCATTCAAGTCTC+TGG | + | chr3.1:84662597-84662616 | None:intergenic | 55.0% | |
| CGGTGGTAAGGTTGGATTCG+GGG | - | chr3.1:84660097-84660116 | MS.gene32648:intron | 55.0% | |
| GCGTAAGCTGAGGTTATGCC+CGG | - | chr3.1:84660916-84660935 | MS.gene32648:intron | 55.0% | |
| GTAAGGTTGGATTCGGGGTG+AGG | - | chr3.1:84660102-84660121 | MS.gene32648:intron | 55.0% | |
| GTTATGCCCGGAGCTTACCA+TGG | - | chr3.1:84660928-84660947 | MS.gene32648:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84660020 | 84662619 | 84660020 | ID=MS.gene32648 |
| chr3.1 | mRNA | 84660020 | 84662619 | 84660020 | ID=MS.gene32648.t1;Parent=MS.gene32648 |
| chr3.1 | exon | 84662193 | 84662619 | 84662193 | ID=MS.gene32648.t1.exon1;Parent=MS.gene32648.t1 |
| chr3.1 | CDS | 84662193 | 84662619 | 84662193 | ID=cds.MS.gene32648.t1;Parent=MS.gene32648.t1 |
| chr3.1 | exon | 84660957 | 84661578 | 84660957 | ID=MS.gene32648.t1.exon2;Parent=MS.gene32648.t1 |
| chr3.1 | CDS | 84660957 | 84661578 | 84660957 | ID=cds.MS.gene32648.t1;Parent=MS.gene32648.t1 |
| chr3.1 | exon | 84660539 | 84660839 | 84660539 | ID=MS.gene32648.t1.exon3;Parent=MS.gene32648.t1 |
| chr3.1 | CDS | 84660539 | 84660839 | 84660539 | ID=cds.MS.gene32648.t1;Parent=MS.gene32648.t1 |
| chr3.1 | exon | 84660270 | 84660458 | 84660270 | ID=MS.gene32648.t1.exon4;Parent=MS.gene32648.t1 |
| chr3.1 | CDS | 84660270 | 84660458 | 84660270 | ID=cds.MS.gene32648.t1;Parent=MS.gene32648.t1 |
| chr3.1 | exon | 84660137 | 84660193 | 84660137 | ID=MS.gene32648.t1.exon5;Parent=MS.gene32648.t1 |
| chr3.1 | CDS | 84660137 | 84660193 | 84660137 | ID=cds.MS.gene32648.t1;Parent=MS.gene32648.t1 |
| chr3.1 | exon | 84660020 | 84660064 | 84660020 | ID=MS.gene32648.t1.exon6;Parent=MS.gene32648.t1 |
| chr3.1 | CDS | 84660020 | 84660064 | 84660020 | ID=cds.MS.gene32648.t1;Parent=MS.gene32648.t1 |
| Gene Sequence |
| Protein sequence |
