AlfalfaGEDB | MS.gene32683

M. sativa cultivar XinJiangDaYe / MS.gene32683

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32683.t1	XP_003603313.1	87.2	187	17	3	1	187	1	180	1.20E-83	319.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32683.t1	Q39262	40.4	161	67	9	29	187	17	150	5.8e-15	82.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32683.t1	G7J9W4	87.2	187	17	3	1	187	1	180	8.5e-84	319.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene32683.t1	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32683.t1	MTR_3g106230	85.561	187	20	3	1	187	1	180	2.37e-109	312
MS.gene32683.t1	MTR_1g013130	51.053	190	76	8	4	187	23	201	2.67e-50	163
MS.gene32683.t1	MTR_2g104900	42.458	179	79	10	12	187	20	177	9.30e-28	104
MS.gene32683.t1	MTR_4g006575	43.363	113	35	4	75	187	65	148	1.26e-19	83.2
MS.gene32683.t1	MTR_4g006600	43.363	113	35	4	75	187	65	148	1.26e-19	83.2
MS.gene32683.t1	MTR_1g033340	44.068	118	42	6	54	165	69	168	2.61e-19	82.8
MS.gene32683.t1	MTR_5g077370	50.538	93	26	3	76	167	86	159	1.68e-18	80.5
MS.gene32683.t1	MTR_3g065020	48.913	92	26	4	77	167	86	157	1.55e-17	77.8
MS.gene32683.t1	MTR_1g107055	40.206	97	36	3	71	166	57	132	6.22e-15	70.1
MS.gene32683.t1	MTR_4g128340	73.684	38	10	0	75	112	43	80	2.49e-14	67.8

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32683.t1	AT5G25160	43.972	141	51	8	48	187	37	150	7.55e-24	94.4
MS.gene32683.t1	AT1G80730	40.876	137	72	4	37	166	20	154	1.57e-22	90.9
MS.gene32683.t1	AT5G10970	36.842	171	80	7	18	187	48	191	2.40e-21	88.6
MS.gene32683.t1	AT1G66140	46.739	92	37	3	77	161	83	169	2.40e-16	75.1
MS.gene32683.t1	AT1G24625	76.316	38	9	0	74	111	54	91	1.62e-15	72.0
MS.gene32683.t1	AT5G57520	65.909	44	15	0	75	118	48	91	6.66e-15	68.9
MS.gene32683.t1	AT5G14010	73.529	34	9	0	77	110	36	69	1.06e-12	63.2
MS.gene32683.t1	AT1G67030	49.275	69	34	1	44	112	7	74	2.36e-11	60.5
MS.gene32683.t1	AT3G58070	52.459	61	24	1	56	116	73	128	4.64e-11	60.5

Showing 1 to 9 of 9 entries

Previous1Next

Find 29 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTCACAAGAGAGAG+AGG	0.643637	3.1:+84315148	MS.gene32683:CDS
AACCTTTGAGGAAGAAGAAA+AGG	0.455284	3.1:+84314900	MS.gene32683:CDS
AATTCATGTGGATTCTGCAA+TGG	0.589371	3.1:-84314865	None:intergenic
ACGATGTTCTCAGCAACAGG+AGG	0.689396	3.1:+84315195	MS.gene32683:CDS
AGAACGATGTTCTCAGCAAC+AGG	0.459446	3.1:+84315192	MS.gene32683:CDS
AGAATTATCTATGTCTAAAC+AGG	0.387114	3.1:-84315007	None:intergenic
AGCAATTATTATGGATATCA+TGG	0.375634	3.1:+84315390	MS.gene32683:CDS
ATATTTATGAAGAAATGAGG+TGG	0.662714	3.1:-84315220	None:intergenic
ATGATATTTATGAAGAAATG+AGG	0.554191	3.1:-84315223	None:intergenic
ATTATTATGGATATCATGGA+TGG	0.583677	3.1:+84315394	MS.gene32683:CDS

Showing 1 to 10 of 29 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTATGTTTCTCCAATTCATG+TGG	-	chr3.1:84314880-84314899	None:intergenic	30.0%
AATTCATGTGGATTCTGCAA+TGG	-	chr3.1:84314868-84314887	None:intergenic	35.0%
ATTGCAGAATCCACATGAAT+TGG	+	chr3.1:84314867-84314886	MS.gene32683:CDS	35.0%
CTAACGATGATTGTGATCTT+GGG	+	chr3.1:84314959-84314978	MS.gene32683:CDS	35.0%
GAGATGCCATATTTGCATAA+CGG	-	chr3.1:84315257-84315276	None:intergenic	35.0%
GAGTGTGCTTTAATTGCAAA+TGG	-	chr3.1:84315318-84315337	None:intergenic	35.0%
GGAGAAACATAAAACCTTTG+AGG	+	chr3.1:84314888-84314907	MS.gene32683:CDS	35.0%
TAGTTGCAAGTGAAAAATCG+TGG	-	chr3.1:84315084-84315103	None:intergenic	35.0%
TCACAACCGTTATGCAAATA+TGG	+	chr3.1:84315248-84315267	MS.gene32683:CDS	35.0%
TCATCAGAAAACTTCACTTG+TGG	+	chr3.1:84315039-84315058	MS.gene32683:CDS	35.0%

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	84314856	84315419	84314856	ID=MS.gene32683
chr3.1	mRNA	84314856	84315419	84314856	ID=MS.gene32683.t1;Parent=MS.gene32683
chr3.1	exon	84314856	84315419	84314856	ID=MS.gene32683.t1.exon1;Parent=MS.gene32683.t1
chr3.1	CDS	84314856	84315419	84314856	ID=cds.MS.gene32683.t1;Parent=MS.gene32683.t1

Gene Sequence

>MS.gene32683

ATGGAAATACCATTGCAGAATCCACATGAATTGGAGAAACATAAAACCTTTGAGGAAGAAGAAAAGGAGGCAAAGGTAGACACTTCATTTGATCTGAATGTTCCTAACGATGATTGTGATCTTGGGTGCAGTTTAAAGTCAAATTTAGTTACCTGTTTAGACATAGATAATTCTTCTAAAACATCATCAGAAAACTTCACTTGTGGCTCTGAATCAACTTCAGAGCCACGATTTTTCACTTGCAACTACTGCAAGAGAAAATTCTTCAGTTCACAAGCACTCGGAGGACATCAAAATGCTCACAAGAGAGAGAGGTCAATTGCAAAAAGAGGACGGAGAACGATGTTCTCAGCAACAGGAGGAACCACCTCATTTCTTCATAAATATCATCTTCACAACCGTTATGCAAATATGGCATCTCTACTACCACTCTTCTGTGCTAATAGTAATAGTATGAGACCATTTGCAATTAAAGCACACTCGATGGTTCAGAAGCCTTTTCATAAATTTTCATCCAATGGCTTTGGAATTGAAAGCAATTATTATGGATATCATGGATGGTAA

Protein sequence

>MS.gene32683.t1

MEIPLQNPHELEKHKTFEEEEKEAKVDTSFDLNVPNDDCDLGCSLKSNLVTCLDIDNSSKTSSENFTCGSESTSEPRFFTCNYCKRKFFSSQALGGHQNAHKRERSIAKRGRRTMFSATGGTTSFLHKYHLHNRYANMASLLPLFCANSNSMRPFAIKAHSMVQKPFHKFSSNGFGIESNYYGYHGW