AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32875

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32875.t1 MTR_7g109640 51.788 643 171 12 4 534 173 788 0.0 565
MS.gene32875.t1 MTR_3g103120 58.932 543 184 10 7 535 317 834 0.0 545
MS.gene32875.t1 MTR_3g103110 49.120 682 179 12 3 535 131 793 0.0 542
MS.gene32875.t1 MTR_5g024390 57.175 439 156 9 106 533 2 419 2.30e-164 473
MS.gene32875.t1 MTR_5g024500 56.492 439 159 9 106 533 2 419 1.25e-161 466
MS.gene32875.t1 MTR_3g103160 84.039 307 27 3 1 306 1 286 3.50e-141 415
MS.gene32875.t1 MTR_3g103160 92.353 170 13 0 372 541 275 444 8.56e-105 322
MS.gene32875.t1 MTR_5g071340 36.812 527 262 15 27 535 613 1086 1.37e-90 301
MS.gene32875.t1 MTR_3g464550 36.634 505 270 12 43 533 540 1008 1.56e-85 287
MS.gene32875.t1 MTR_2g078040 34.234 444 244 10 103 533 758 1166 7.42e-68 238
MS.gene32875.t1 MTR_1g072130 32.731 443 266 12 103 538 808 1225 1.32e-61 220
MS.gene32875.t1 MTR_1g103830 33.735 415 235 7 103 507 602 986 2.98e-61 219
MS.gene32875.t1 MTR_1g068930 27.438 441 231 15 141 539 459 852 3.82e-39 153
MS.gene32875.t1 MTR_1g068930 26.667 450 223 15 141 539 496 889 5.01e-39 152
MS.gene32875.t1 MTR_7g095140 30.897 301 173 8 220 514 13 284 3.34e-37 141
MS.gene32875.t1 MTR_4g099530 27.340 406 243 12 135 533 138 498 2.28e-33 133
MS.gene32875.t1 MTR_4g056990 24.622 463 253 13 105 518 188 603 1.61e-31 129
MS.gene32875.t1 MTR_1g062330 24.835 455 232 14 141 528 386 797 3.04e-31 129
MS.gene32875.t1 MTR_4g050090 25.052 483 231 16 111 517 199 626 3.74e-30 125
MS.gene32875.t1 MTR_7g102610 24.894 470 231 17 133 531 527 945 4.28e-30 125
MS.gene32875.t1 MTR_4g057290 23.391 466 240 12 111 506 94 512 6.41e-25 108
MS.gene32875.t1 MTR_6g061000 50.000 80 37 1 196 275 25 101 1.32e-17 78.6
MS.gene32875.t1 MTR_1g062330 23.662 355 163 13 141 430 386 697 3.18e-17 85.5
MS.gene32875.t1 MTR_2g084425 25.000 192 135 4 345 533 833 1018 6.26e-15 78.6
MS.gene32875.t1 MTR_2g084425 29.630 216 108 7 59 266 416 595 2.23e-11 67.4
MS.gene32875.t1 MTR_2g084425 33.835 133 49 4 141 266 495 595 2.86e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32875.t1 AT5G58610 35.800 500 265 11 64 538 314 782 3.80e-83 276
MS.gene32875.t1 AT5G58610 35.800 500 265 11 64 538 545 1013 6.40e-82 276
MS.gene32875.t1 AT5G58610 35.800 500 265 11 64 538 545 1013 6.40e-82 276
MS.gene32875.t1 AT5G58610 35.800 500 265 11 64 538 536 1004 1.32e-81 276
MS.gene32875.t1 AT5G58610 35.800 500 265 11 64 538 545 1013 1.72e-81 275
MS.gene32875.t1 AT5G58610 35.800 500 265 11 64 538 536 1004 1.76e-81 275
MS.gene32875.t1 AT5G58610 34.677 496 250 12 64 538 536 978 2.50e-74 255
MS.gene32875.t1 AT5G58610 34.677 496 250 11 64 538 536 978 2.65e-74 255
MS.gene32875.t1 AT5G36740 32.949 434 255 9 115 538 547 954 2.70e-66 233
MS.gene32875.t1 AT5G36740 32.949 434 255 9 115 538 547 954 2.70e-66 233
MS.gene32875.t1 AT5G58610 34.932 438 229 11 64 476 545 951 6.28e-66 231
MS.gene32875.t1 AT5G58610 34.932 438 229 11 64 476 536 942 8.40e-66 230
MS.gene32875.t1 AT5G36740 32.353 442 257 10 115 538 394 811 3.93e-63 223
MS.gene32875.t1 AT1G05380 32.135 445 268 10 103 540 516 933 4.98e-60 215
MS.gene32875.t1 AT1G05380 32.135 445 268 10 103 540 516 933 4.98e-60 215
MS.gene32875.t1 AT1G05380 32.135 445 268 10 103 540 516 933 4.98e-60 215
MS.gene32875.t1 AT3G14980 31.041 509 276 17 48 533 567 1023 8.68e-59 211
MS.gene32875.t1 AT3G14980 31.041 509 276 17 48 533 567 1023 8.68e-59 211
MS.gene32875.t1 AT3G14980 31.041 509 276 17 48 533 567 1023 8.68e-59 211
MS.gene32875.t1 AT3G14980 30.966 507 279 16 48 533 567 1023 1.02e-58 211
MS.gene32875.t1 AT3G14980 31.041 509 276 17 48 533 522 978 1.04e-58 211
MS.gene32875.t1 AT5G36670 30.667 450 258 11 115 538 547 968 4.65e-58 209
MS.gene32875.t1 AT5G36670 30.667 450 258 11 115 538 547 968 4.65e-58 209
MS.gene32875.t1 AT5G36740 33.693 371 210 9 115 475 547 891 3.28e-57 206
MS.gene32875.t1 AT5G36740 33.693 371 210 9 115 475 547 891 3.28e-57 206
MS.gene32875.t1 AT5G36670 33.693 371 210 9 115 475 547 891 3.28e-57 206
MS.gene32875.t1 AT4G14920 28.676 544 307 19 14 539 513 993 9.73e-55 199
MS.gene32875.t1 AT4G14920 28.676 544 307 19 14 539 513 993 9.73e-55 199
MS.gene32875.t1 AT4G14920 28.676 544 307 19 14 539 513 993 1.03e-54 199
MS.gene32875.t1 AT5G36670 30.131 458 260 12 115 538 394 825 1.26e-54 199
MS.gene32875.t1 AT5G36670 30.131 458 260 12 115 538 547 978 1.48e-54 199
MS.gene32875.t1 AT5G63900 36.562 320 169 9 220 536 255 543 5.80e-54 192
MS.gene32875.t1 AT5G58610 33.827 405 212 11 64 443 536 909 1.31e-53 195
MS.gene32875.t1 AT2G37520 27.252 433 228 14 141 522 410 806 5.99e-38 149
MS.gene32875.t1 AT3G53680 28.019 414 217 13 141 508 429 807 1.31e-37 148
MS.gene32875.t1 AT3G53680 28.019 414 217 13 141 508 427 805 1.44e-37 148
MS.gene32875.t1 AT3G14980 29.904 418 222 16 48 444 567 934 2.27e-37 147
MS.gene32875.t1 AT2G36720 24.000 475 233 13 141 539 557 979 2.58e-35 142
MS.gene32875.t1 AT2G36720 24.000 475 233 13 141 539 557 979 2.58e-35 142
MS.gene32875.t1 AT2G27980 25.957 470 236 13 141 540 637 1064 1.17e-31 130

Find 98 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACTTTCTTTGAATTTC+AGG 0.141944 3.1:+81618631 MS.gene32875:CDS
ACATGTTCTGTTTGTTGTTT+TGG 0.157762 3.1:+81617747 MS.gene32875:CDS
AGATCATTCCCAAGCTTATT+TGG 0.196412 3.1:-81618119 None:intergenic
ACCATTCAAAAGTATCTTCT+TGG 0.232013 3.1:+81617578 MS.gene32875:CDS
GTGGCAACCATAAGGATTTA+TGG 0.239122 3.1:+81618395 MS.gene32875:CDS
TGGTTTCTATACTGCGATTA+TGG 0.240807 3.1:+81618349 MS.gene32875:CDS
TGCAAATTCTTGTTTGCGTT+TGG 0.242204 3.1:-81617901 None:intergenic
GTTGATAAAGGATGGAGTTT+TGG 0.297915 3.1:+81617410 MS.gene32875:CDS
ACAAGCATGAGCCTCAAATT+TGG 0.327395 3.1:-81617541 None:intergenic
TCGTTCCACTCTGATTGTTT+AGG 0.327474 3.1:+81617804 MS.gene32875:CDS
CTAAAGAGGGAAGGTATAAG+AGG 0.337184 3.1:+81617375 MS.gene32875:CDS
ACAAGAGATACTCCCTCTTT+TGG 0.339052 3.1:-81617475 None:intergenic
CGGAACTTCATTGTTGGACT+TGG 0.361651 3.1:+81617605 MS.gene32875:CDS
GTTTCTAAAGCCTCTAGTTC+CGG 0.368804 3.1:+81617228 MS.gene32875:CDS
GCAAATTCTTGTTTGCGTTT+GGG 0.380503 3.1:-81617900 None:intergenic
CAGACCATCCGGATCTCGTT+TGG 0.386226 3.1:-81617829 None:intergenic
CCAAGTGTCTATAGCATCCT+TGG 0.387385 3.1:-81618552 None:intergenic
GGAACGGATAAATCAACTTC+TGG 0.396861 3.1:+81617201 MS.gene32875:CDS
ACATGTTCCCACAAACTTCA+TGG 0.397494 3.1:-81618067 None:intergenic
ATTCACTCTCACCAAATTTG+AGG 0.418669 3.1:+81617530 MS.gene32875:CDS
TGTGTAAAGGCAACAAGAAT+TGG 0.422575 3.1:+81617984 MS.gene32875:CDS
CATAAGGATTTATGGTCAAA+AGG 0.428606 3.1:+81618403 MS.gene32875:CDS
CAAACGAGATCCGGATGGTC+TGG 0.433972 3.1:+81617830 MS.gene32875:CDS
AGTTGATTAACTTAGGAGTT+GGG 0.439665 3.1:+81618510 MS.gene32875:CDS
AGACCATCCGGATCTCGTTT+GGG 0.445042 3.1:-81617828 None:intergenic
AAGAAACGTTTGAACTTTCG+TGG 0.445092 3.1:+81618329 MS.gene32875:CDS
AAGACACTTTCTTTGTTAAG+TGG 0.445784 3.1:-81618674 None:intergenic
TTGTAATGCTGAAGCAAAAT+CGG 0.448060 3.1:+81617674 MS.gene32875:CDS
TTTAGGTCCCAAACGAGATC+CGG 0.450042 3.1:+81617821 MS.gene32875:CDS
ATGTGACTAGAAACTTCATT+TGG 0.453838 3.1:-81618011 None:intergenic
GGAAGACGGAACTTCATTGT+TGG 0.455884 3.1:+81617599 MS.gene32875:CDS
TCTGAGCTCAGCCAATCAAA+AGG 0.457877 3.1:+81617644 MS.gene32875:CDS
ATTGACAATGTTACCAAAAG+AGG 0.459673 3.1:+81617462 MS.gene32875:CDS
GAAGTGTTCTCAGTTGATAA+AGG 0.461389 3.1:+81617398 MS.gene32875:CDS
CGTAAATTGACTGTGGCTCT+TGG 0.463118 3.1:+81618218 MS.gene32875:CDS
GAGGAACAGTTGATTAACTT+AGG 0.464976 3.1:+81618503 MS.gene32875:CDS
GGTGTGCTGCGTGAGAGTTT+TGG 0.469338 3.1:+81618239 MS.gene32875:CDS
TGTTGTTGTTGTTCCTTCCT+CGG 0.473116 3.1:-81617127 None:intergenic
CTGAGCTCAGCCAATCAAAA+GGG 0.474959 3.1:+81617645 MS.gene32875:CDS
CTAGGAATACCAAATAAGCT+TGG 0.478097 3.1:+81618110 MS.gene32875:CDS
TATACTGCGATTATGGAGAA+AGG 0.478537 3.1:+81618356 MS.gene32875:CDS
CCGTTCCCTCAGATTCTCTC+AGG 0.480436 3.1:-81617185 None:intergenic
TAGGAATACCAAATAAGCTT+GGG 0.480908 3.1:+81618111 MS.gene32875:CDS
ATACTGCGATTATGGAGAAA+GGG 0.484197 3.1:+81618357 MS.gene32875:CDS
ATTTCACTTGGGGTGTGTAA+AGG 0.484386 3.1:+81617971 MS.gene32875:CDS
CAGTTGATTAACTTAGGAGT+TGG 0.492298 3.1:+81618509 MS.gene32875:CDS
TATAATGTGAGTTGTGATGA+TGG 0.496882 3.1:+81618161 MS.gene32875:CDS
AGCTCAGAGCTTTCATTCGA+CGG 0.500191 3.1:-81617629 None:intergenic
TAACTTAGGAGTTGGGAGCT+TGG 0.501005 3.1:+81618517 MS.gene32875:CDS
AGCTTGGGAATGATCTAACT+TGG 0.501787 3.1:+81618126 MS.gene32875:CDS
GGATAAATCAACTTCTGGTA+AGG 0.504650 3.1:+81617206 MS.gene32875:CDS
AAAGAGGGAAAGTACTAAAG+AGG 0.506275 3.1:+81617361 MS.gene32875:CDS
TGAGTTCTGTGGCAACCATA+AGG 0.512428 3.1:+81618387 MS.gene32875:CDS
CGGATGGTCTGGATGGTACA+TGG 0.516273 3.1:+81617841 MS.gene32875:CDS
AAGAGGGAAAGTACTAAAGA+GGG 0.517147 3.1:+81617362 MS.gene32875:CDS
AATGTGCCGTTTGTTGATGA+AGG 0.520351 3.1:+81618475 MS.gene32875:CDS
GTTTCTAATTCAGTGGGTAG+TGG 0.524886 3.1:+81617336 MS.gene32875:CDS
CCAAGGATGCTATAGACACT+TGG 0.526403 3.1:+81618552 MS.gene32875:CDS
AAAAGTATCTTCTTGGAAGA+CGG 0.533523 3.1:+81617585 MS.gene32875:CDS
TAAAGAGGGAAGGTATAAGA+GGG 0.542556 3.1:+81617376 MS.gene32875:CDS
CATGTACCATCCAGACCATC+CGG 0.542947 3.1:-81617840 None:intergenic
CAATCAGAGTGGAACGAAGA+AGG 0.546313 3.1:-81617798 None:intergenic
ATCAGAAGTTTCTAATTCAG+TGG 0.547714 3.1:+81617329 MS.gene32875:CDS
TCAGTGGGTAGTGGTAAAAG+AGG 0.549198 3.1:+81617345 MS.gene32875:CDS
ATGTGAACGAAAATTTCACT+TGG 0.549257 3.1:+81617959 MS.gene32875:CDS
TGTTCTCAGTTGATAAAGGA+TGG 0.550925 3.1:+81617402 MS.gene32875:CDS
CGAGATCCGGATGGTCTGGA+TGG 0.554408 3.1:+81617834 MS.gene32875:CDS
CAGTGGGTAGTGGTAAAAGA+GGG 0.562756 3.1:+81617346 MS.gene32875:CDS
CAAGCCCCTTCATCAACAAA+CGG 0.563396 3.1:-81618481 None:intergenic
TGTGAACGAAAATTTCACTT+GGG 0.566723 3.1:+81617960 MS.gene32875:CDS
AGATCGCCTGAGAGAATCTG+AGG 0.577144 3.1:+81617179 MS.gene32875:CDS
TCAGAAGTTTCTAATTCAGT+GGG 0.578275 3.1:+81617330 MS.gene32875:CDS
CCTGAGAGAATCTGAGGGAA+CGG 0.579608 3.1:+81617185 MS.gene32875:CDS
GGTATCAAGATCAACTTCAA+AGG 0.589208 3.1:+81617278 MS.gene32875:CDS
ATGTGCCGTTTGTTGATGAA+GGG 0.591926 3.1:+81618476 MS.gene32875:CDS
TTTAACAGAACCGGAACTAG+AGG 0.594122 3.1:-81617238 None:intergenic
CGACAGAGAGAATCCGAGGA+AGG 0.596626 3.1:+81617114 MS.gene32875:CDS
TTATGTCTAGAGAAACTACT+AGG 0.598338 3.1:+81618092 MS.gene32875:CDS
AAAGCGACAGAGAGAATCCG+AGG 0.599141 3.1:+81617110 MS.gene32875:CDS
GGGAAAGTACTAAAGAGGGA+AGG 0.603607 3.1:+81617366 MS.gene32875:CDS
TACTGCGATTATGGAGAAAG+GGG 0.609394 3.1:+81618358 MS.gene32875:CDS
CATATTCTACAACAGCAACT+CGG 0.614325 3.1:-81617870 None:intergenic
TGTGCCGTTTGTTGATGAAG+GGG 0.619488 3.1:+81618477 MS.gene32875:CDS
TTGACAATGTTACCAAAAGA+GGG 0.620789 3.1:+81617463 MS.gene32875:CDS
AGTGTCTATAGCATCCTTGG+AGG 0.622116 3.1:-81618549 None:intergenic
TTTGTTGATGAAGGGGCTTG+AGG 0.622358 3.1:+81618484 MS.gene32875:CDS
CTGATGAGGAGTTTCATCAA+AGG 0.623829 3.1:+81618192 MS.gene32875:CDS
GTGAACGAAAATTTCACTTG+GGG 0.624887 3.1:+81617961 MS.gene32875:CDS
AAATGAAGTTTCTAGTCACA+TGG 0.625461 3.1:+81618013 MS.gene32875:CDS
AGAGGGAGTATCTCTTGTGA+AGG 0.627844 3.1:+81617480 MS.gene32875:CDS
TGAGCTCAGCCAATCAAAAG+GGG 0.629047 3.1:+81617646 MS.gene32875:CDS
GGTGACTTAATATTATGTGA+TGG 0.647953 3.1:+81617771 MS.gene32875:CDS
GATCGCCTGAGAGAATCTGA+GGG 0.652065 3.1:+81617180 MS.gene32875:CDS
GGTCCCAAACGAGATCCGGA+TGG 0.671675 3.1:+81617825 MS.gene32875:CDS
TGGTAACATTGTCAATACCA+CGG 0.676702 3.1:-81617455 None:intergenic
ACTGCGATTATGGAGAAAGG+GGG 0.694924 3.1:+81618359 MS.gene32875:CDS
AAGGAAGCGTAAATTGACTG+TGG 0.704717 3.1:+81618211 MS.gene32875:CDS
TGGGACCTAAACAATCAGAG+TGG 0.741486 3.1:-81617809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTATTGAAAAAAATAAT+TGG + chr3.1:81618039-81618058 MS.gene32875:CDS 10.0%
!!! ATCAAATCTTTTTTAGATAA+AGG - chr3.1:81618278-81618297 None:intergenic 15.0%
!! AAAAAAAAATATCGAAGACA+AGG + chr3.1:81618452-81618471 MS.gene32875:CDS 20.0%
!! TTATACTTTCTTTGAATTTC+AGG + chr3.1:81618631-81618650 MS.gene32875:CDS 20.0%
!!! TTGTCTTCGATATTTTTTTT+TGG - chr3.1:81618453-81618472 None:intergenic 20.0%
! TAAAAAAGCTACACTAACTA+CGG + chr3.1:81617257-81617276 MS.gene32875:CDS 25.0%
!!! TCTTCGATATTTTTTTTTGG+TGG - chr3.1:81618450-81618469 None:intergenic 25.0%
AAGACACTTTCTTTGTTAAG+TGG - chr3.1:81618677-81618696 None:intergenic 30.0%
AGTTGATTAACTTAGGAGTT+GGG + chr3.1:81618510-81618529 MS.gene32875:CDS 30.0%
ATCAGAAGTTTCTAATTCAG+TGG + chr3.1:81617329-81617348 MS.gene32875:CDS 30.0%
ATGTGAACGAAAATTTCACT+TGG + chr3.1:81617959-81617978 MS.gene32875:CDS 30.0%
ATGTGACTAGAAACTTCATT+TGG - chr3.1:81618014-81618033 None:intergenic 30.0%
ATTGACAATGTTACCAAAAG+AGG + chr3.1:81617462-81617481 MS.gene32875:CDS 30.0%
CATAAGGATTTATGGTCAAA+AGG + chr3.1:81618403-81618422 MS.gene32875:CDS 30.0%
GGTGACTTAATATTATGTGA+TGG + chr3.1:81617771-81617790 MS.gene32875:CDS 30.0%
TAGGAATACCAAATAAGCTT+GGG + chr3.1:81618111-81618130 MS.gene32875:CDS 30.0%
TATAATGTGAGTTGTGATGA+TGG + chr3.1:81618161-81618180 MS.gene32875:CDS 30.0%
TCAGAAGTTTCTAATTCAGT+GGG + chr3.1:81617330-81617349 MS.gene32875:CDS 30.0%
TGTGAACGAAAATTTCACTT+GGG + chr3.1:81617960-81617979 MS.gene32875:CDS 30.0%
TTATGTCTAGAGAAACTACT+AGG + chr3.1:81618092-81618111 MS.gene32875:CDS 30.0%
TTGACAATGTTACCAAAAGA+GGG + chr3.1:81617463-81617482 MS.gene32875:CDS 30.0%
TTGTAATGCTGAAGCAAAAT+CGG + chr3.1:81617674-81617693 MS.gene32875:CDS 30.0%
! CTTTTGACCATAAATCCTTA+TGG - chr3.1:81618405-81618424 None:intergenic 30.0%
! TCCAAGAAGATACTTTTGAA+TGG - chr3.1:81617582-81617601 None:intergenic 30.0%
!! AAAAGTATCTTCTTGGAAGA+CGG + chr3.1:81617585-81617604 MS.gene32875:CDS 30.0%
!! AAATGAAGTTTCTAGTCACA+TGG + chr3.1:81618013-81618032 MS.gene32875:CDS 30.0%
!! ACCATTCAAAAGTATCTTCT+TGG + chr3.1:81617578-81617597 MS.gene32875:CDS 30.0%
!!! ACATGTTCTGTTTGTTGTTT+TGG + chr3.1:81617747-81617766 MS.gene32875:CDS 30.0%
!!! ATGTTCTGTTTGTTGTTTTG+GGG + chr3.1:81617749-81617768 MS.gene32875:CDS 30.0%
!!! CATGTTCTGTTTGTTGTTTT+GGG + chr3.1:81617748-81617767 MS.gene32875:CDS 30.0%
!!! TGTAGCTTTTTTAACAGAAC+CGG - chr3.1:81617250-81617269 None:intergenic 30.0%
AAGAAACGTTTGAACTTTCG+TGG + chr3.1:81618329-81618348 MS.gene32875:CDS 35.0%
AGATCATTCCCAAGCTTATT+TGG - chr3.1:81618122-81618141 None:intergenic 35.0%
ATACTGCGATTATGGAGAAA+GGG + chr3.1:81618357-81618376 MS.gene32875:CDS 35.0%
ATTCACTCTCACCAAATTTG+AGG + chr3.1:81617530-81617549 MS.gene32875:CDS 35.0%
CAGTTGATTAACTTAGGAGT+TGG + chr3.1:81618509-81618528 MS.gene32875:CDS 35.0%
CATATTCTACAACAGCAACT+CGG - chr3.1:81617873-81617892 None:intergenic 35.0%
CTAGGAATACCAAATAAGCT+TGG + chr3.1:81618110-81618129 MS.gene32875:CDS 35.0%
GAGGAACAGTTGATTAACTT+AGG + chr3.1:81618503-81618522 MS.gene32875:CDS 35.0%
GGATAAATCAACTTCTGGTA+AGG + chr3.1:81617206-81617225 MS.gene32875:CDS 35.0%
GGTATCAAGATCAACTTCAA+AGG + chr3.1:81617278-81617297 MS.gene32875:CDS 35.0%
GTGAACGAAAATTTCACTTG+GGG + chr3.1:81617961-81617980 MS.gene32875:CDS 35.0%
TATACTGCGATTATGGAGAA+AGG + chr3.1:81618356-81618375 MS.gene32875:CDS 35.0%
TGGTAACATTGTCAATACCA+CGG - chr3.1:81617458-81617477 None:intergenic 35.0%
TGGTTTCTATACTGCGATTA+TGG + chr3.1:81618349-81618368 MS.gene32875:CDS 35.0%
TGTGTAAAGGCAACAAGAAT+TGG + chr3.1:81617984-81618003 MS.gene32875:CDS 35.0%
! ACAATCATTCCCCTTTTGAT+TGG - chr3.1:81617658-81617677 None:intergenic 35.0%
! GCAAATTCTTGTTTGCGTTT+GGG - chr3.1:81617903-81617922 None:intergenic 35.0%
! GTTCAAACGTTTCTTTTCTG+AGG - chr3.1:81618324-81618343 None:intergenic 35.0%
! TAAAGAGGGAAGGTATAAGA+GGG + chr3.1:81617376-81617395 MS.gene32875:CDS 35.0%
! TGATGGAGATTTTACTGATG+AGG + chr3.1:81618178-81618197 MS.gene32875:CDS 35.0%
! TGCAAATTCTTGTTTGCGTT+TGG - chr3.1:81617904-81617923 None:intergenic 35.0%
!! AAAGAGGGAAAGTACTAAAG+AGG + chr3.1:81617361-81617380 MS.gene32875:CDS 35.0%
!! AAGAGGGAAAGTACTAAAGA+GGG + chr3.1:81617362-81617381 MS.gene32875:CDS 35.0%
!! GAAGTGTTCTCAGTTGATAA+AGG + chr3.1:81617398-81617417 MS.gene32875:CDS 35.0%
!! GTTGATAAAGGATGGAGTTT+TGG + chr3.1:81617410-81617429 MS.gene32875:CDS 35.0%
!! TGTTCTCAGTTGATAAAGGA+TGG + chr3.1:81617402-81617421 MS.gene32875:CDS 35.0%
!!! TGTTCTGTTTGTTGTTTTGG+GGG + chr3.1:81617750-81617769 MS.gene32875:CDS 35.0%
ACAAGCATGAGCCTCAAATT+TGG - chr3.1:81617544-81617563 None:intergenic 40.0%
ACATGTTCCCACAAACTTCA+TGG - chr3.1:81618070-81618089 None:intergenic 40.0%
AGCTTGGGAATGATCTAACT+TGG + chr3.1:81618126-81618145 MS.gene32875:CDS 40.0%
ATTTCACTTGGGGTGTGTAA+AGG + chr3.1:81617971-81617990 MS.gene32875:CDS 40.0%
CTGATGAGGAGTTTCATCAA+AGG + chr3.1:81618192-81618211 MS.gene32875:CDS 40.0%
GGAACGGATAAATCAACTTC+TGG + chr3.1:81617201-81617220 MS.gene32875:CDS 40.0%
GTGGCAACCATAAGGATTTA+TGG + chr3.1:81618395-81618414 MS.gene32875:CDS 40.0%
GTTTCTAATTCAGTGGGTAG+TGG + chr3.1:81617336-81617355 MS.gene32875:CDS 40.0%
TACTGCGATTATGGAGAAAG+GGG + chr3.1:81618358-81618377 MS.gene32875:CDS 40.0%
TCGTTCCACTCTGATTGTTT+AGG + chr3.1:81617804-81617823 MS.gene32875:CDS 40.0%
TTTAACAGAACCGGAACTAG+AGG - chr3.1:81617241-81617260 None:intergenic 40.0%
! AAGGAAGCGTAAATTGACTG+TGG + chr3.1:81618211-81618230 MS.gene32875:CDS 40.0%
! ACAAGAGATACTCCCTCTTT+TGG - chr3.1:81617478-81617497 None:intergenic 40.0%
! CTAAAGAGGGAAGGTATAAG+AGG + chr3.1:81617375-81617394 MS.gene32875:CDS 40.0%
! GGTTGCTGAGATTGTTTTCA+TGG + chr3.1:81618424-81618443 MS.gene32875:CDS 40.0%
! GGTTTTGCCATGAAGTTTGT+GGG + chr3.1:81618060-81618079 MS.gene32875:CDS 40.0%
! TGTTGTTGTTGTTCCTTCCT+CGG - chr3.1:81617130-81617149 None:intergenic 40.0%
!! AATGTGCCGTTTGTTGATGA+AGG + chr3.1:81618475-81618494 MS.gene32875:CDS 40.0%
!! AGGCGATCTTTTGACTGTAA+TGG - chr3.1:81617168-81617187 None:intergenic 40.0%
!! ATGTGCCGTTTGTTGATGAA+GGG + chr3.1:81618476-81618495 MS.gene32875:CDS 40.0%
!! GTTTCTAAAGCCTCTAGTTC+CGG + chr3.1:81617228-81617247 MS.gene32875:CDS 40.0%
!! TGGTTTTGCCATGAAGTTTG+TGG + chr3.1:81618059-81618078 MS.gene32875:CDS 40.0%
!!! AAGGATGGAGTTTTGGTTTC+TGG + chr3.1:81617417-81617436 MS.gene32875:CDS 40.0%
!!! AGGATGGAGTTTTGGTTTCT+GGG + chr3.1:81617418-81617437 MS.gene32875:CDS 40.0%
ACTGCGATTATGGAGAAAGG+GGG + chr3.1:81618359-81618378 MS.gene32875:CDS 45.0%
AGCTCAGAGCTTTCATTCGA+CGG - chr3.1:81617632-81617651 None:intergenic 45.0%
AGTGTCTATAGCATCCTTGG+AGG - chr3.1:81618552-81618571 None:intergenic 45.0%
CAAGCCCCTTCATCAACAAA+CGG - chr3.1:81618484-81618503 None:intergenic 45.0%
CAATCAGAGTGGAACGAAGA+AGG - chr3.1:81617801-81617820 None:intergenic 45.0%
CCAAGGATGCTATAGACACT+TGG + chr3.1:81618552-81618571 MS.gene32875:CDS 45.0%
CCAAGTGTCTATAGCATCCT+TGG - chr3.1:81618555-81618574 None:intergenic 45.0%
CGGAACTTCATTGTTGGACT+TGG + chr3.1:81617605-81617624 MS.gene32875:CDS 45.0%
CGTAAATTGACTGTGGCTCT+TGG + chr3.1:81618218-81618237 MS.gene32875:CDS 45.0%
CTGAGCTCAGCCAATCAAAA+GGG + chr3.1:81617645-81617664 MS.gene32875:CDS 45.0%
GGAAGACGGAACTTCATTGT+TGG + chr3.1:81617599-81617618 MS.gene32875:CDS 45.0%
TAACTTAGGAGTTGGGAGCT+TGG + chr3.1:81618517-81618536 MS.gene32875:CDS 45.0%
TCTGAGCTCAGCCAATCAAA+AGG + chr3.1:81617644-81617663 MS.gene32875:CDS 45.0%
TGAGCTCAGCCAATCAAAAG+GGG + chr3.1:81617646-81617665 MS.gene32875:CDS 45.0%
TGAGTTCTGTGGCAACCATA+AGG + chr3.1:81618387-81618406 MS.gene32875:CDS 45.0%
TGGGACCTAAACAATCAGAG+TGG - chr3.1:81617812-81617831 None:intergenic 45.0%
TTTAGGTCCCAAACGAGATC+CGG + chr3.1:81617821-81617840 MS.gene32875:CDS 45.0%
! CAGTGGGTAGTGGTAAAAGA+GGG + chr3.1:81617346-81617365 MS.gene32875:CDS 45.0%
! TCAGTGGGTAGTGGTAAAAG+AGG + chr3.1:81617345-81617364 MS.gene32875:CDS 45.0%
! TTTGTTGATGAAGGGGCTTG+AGG + chr3.1:81618484-81618503 MS.gene32875:CDS 45.0%
!! AGAGGGAGTATCTCTTGTGA+AGG + chr3.1:81617480-81617499 MS.gene32875:CDS 45.0%
!! GGGAAAGTACTAAAGAGGGA+AGG + chr3.1:81617366-81617385 MS.gene32875:CDS 45.0%
!! TGTGCCGTTTGTTGATGAAG+GGG + chr3.1:81618477-81618496 MS.gene32875:CDS 45.0%
!!! CTTGGTTTTGCATTCCTCCA+AGG + chr3.1:81618535-81618554 MS.gene32875:CDS 45.0%
AAAGCGACAGAGAGAATCCG+AGG + chr3.1:81617110-81617129 MS.gene32875:CDS 50.0%
AGACCATCCGGATCTCGTTT+GGG - chr3.1:81617831-81617850 None:intergenic 50.0%
AGATCGCCTGAGAGAATCTG+AGG + chr3.1:81617179-81617198 MS.gene32875:CDS 50.0%
AGGGGGTAAAGTGAGTTCTG+TGG + chr3.1:81618376-81618395 MS.gene32875:CDS 50.0%
CATGTACCATCCAGACCATC+CGG - chr3.1:81617843-81617862 None:intergenic 50.0%
CCTGAGAGAATCTGAGGGAA+CGG + chr3.1:81617185-81617204 MS.gene32875:CDS 50.0%
GATCGCCTGAGAGAATCTGA+GGG + chr3.1:81617180-81617199 MS.gene32875:CDS 50.0%
! GGGACTATTGTTTTCTGCCG+TGG + chr3.1:81617438-81617457 MS.gene32875:CDS 50.0%
CAAACGAGATCCGGATGGTC+TGG + chr3.1:81617830-81617849 MS.gene32875:CDS 55.0%
CAGACCATCCGGATCTCGTT+TGG - chr3.1:81617832-81617851 None:intergenic 55.0%
CCGTTCCCTCAGATTCTCTC+AGG - chr3.1:81617188-81617207 None:intergenic 55.0%
CGACAGAGAGAATCCGAGGA+AGG + chr3.1:81617114-81617133 MS.gene32875:CDS 55.0%
CGGATGGTCTGGATGGTACA+TGG + chr3.1:81617841-81617860 MS.gene32875:CDS 55.0%
! GGTGTGCTGCGTGAGAGTTT+TGG + chr3.1:81618239-81618258 MS.gene32875:CDS 55.0%
CGAGATCCGGATGGTCTGGA+TGG + chr3.1:81617834-81617853 MS.gene32875:CDS 60.0%
GGTCCCAAACGAGATCCGGA+TGG + chr3.1:81617825-81617844 MS.gene32875:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 81617081 81618706 81617081 ID=MS.gene32875
chr3.1 mRNA 81617081 81618706 81617081 ID=MS.gene32875.t1;Parent=MS.gene32875
chr3.1 exon 81617081 81618706 81617081 ID=MS.gene32875.t1.exon1;Parent=MS.gene32875.t1
chr3.1 CDS 81617081 81618706 81617081 ID=cds.MS.gene32875.t1;Parent=MS.gene32875.t1
Gene Sequence

>MS.gene32875

ATGACTTCTCTGTCTACATTACAGTCAAAAAAGCGACAGAGAGAATCCGAGGAAGGAACAACAACAACAACAATTTCTTCATCTCCATTACAGTCAAAAGATCGCCTGAGAGAATCTGAGGGAACGGATAAATCAACTTCTGGTAAGGTTTCTAAAGCCTCTAGTTCCGGTTCTGTTAAAAAAGCTACACTAACTACGGTATCAAGATCAACTTCAAAGGAAAATGAGAAACATGTGAGTCAATCTGAATCAGAAGTTTCTAATTCAGTGGGTAGTGGTAAAAGAGGGAAAGTACTAAAGAGGGAAGGTATAAGAGGGAAGTGTTCTCAGTTGATAAAGGATGGAGTTTTGGTTTCTGGGACTATTGTTTTCTGCCGTGGTATTGACAATGTTACCAAAAGAGGGAGTATCTCTTGTGAAGGTATAGCTTGTGATTGTTGTCATGTTAAATTCACTCTCACCAAATTTGAGGCTCATGCTTGTTGTACAAGACATAGACCATTCAAAAGTATCTTCTTGGAAGACGGAACTTCATTGTTGGACTTGGACCGTCGAATGAAAGCTCTGAGCTCAGCCAATCAAAAGGGGAATGATTGTAATGCTGAAGCAAAATCGGAAGCAGCGAATAGTTGTGTTGCTGAAGAAAAGTCTCATGAAAATAATGATACATGTTCTGTTTGTTGTTTTGGGGGTGACTTAATATTATGTGATGGATGTCCTTCTTCGTTCCACTCTGATTGTTTAGGTCCCAAACGAGATCCGGATGGTCTGGATGGTACATGGTTATGTCCGAGTTGCTGTTGTAGAATATGTTGTCAACCCAAACGCAAACAAGAATTTGCAAATGATATTGATGACGATATTCTTGCTTGTGTTCAATGTGAACGAAAATTTCACTTGGGGTGTGTAAAGGCAACAAGAATTGGACAACCAAATGAAGTTTCTAGTCACATGGACAACATTATTGAAAAAAATAATTGGTTTTGCCATGAAGTTTGTGGGAACATGTTCTTATGTCTAGAGAAACTACTAGGAATACCAAATAAGCTTGGGAATGATCTAACTTGGACATTGTTGAAGTATAATGTGAGTTGTGATGATGGAGATTTTACTGATGAGGAGTTTCATCAAAGGAAGCGTAAATTGACTGTGGCTCTTGGTGTGCTGCGTGAGAGTTTTGGTGAAACTATTGATCCTTTATCTAAAAAAGATTTGATTGAAGATGTTGTGTTTAGTAGATCCTCAGAAAAGAAACGTTTGAACTTTCGTGGTTTCTATACTGCGATTATGGAGAAAGGGGGTAAAGTGAGTTCTGTGGCAACCATAAGGATTTATGGTCAAAAGGTTGCTGAGATTGTTTTCATGGCCACCAAAAAAAAATATCGAAGACAAGGAATGTGCCGTTTGTTGATGAAGGGGCTTGAGGAACAGTTGATTAACTTAGGAGTTGGGAGCTTGGTTTTGCATTCCTCCAAGGATGCTATAGACACTTGGAAAAAATCATTTCATTTTGTTGAGATGACGAATGAAGACAAGTGTAAATTTGTTCATTATACTTTCTTTGAATTTCAGGACACTATCATGTGTCTTAAGCCACTTAACAAAGAAAGTGTCTTAAGTCACTGA
Protein sequence

>MS.gene32875.t1

MTSLSTLQSKKRQRESEEGTTTTTISSSPLQSKDRLRESEGTDKSTSGKVSKASSSGSVKKATLTTVSRSTSKENEKHVSQSESEVSNSVGSGKRGKVLKREGIRGKCSQLIKDGVLVSGTIVFCRGIDNVTKRGSISCEGIACDCCHVKFTLTKFEAHACCTRHRPFKSIFLEDGTSLLDLDRRMKALSSANQKGNDCNAEAKSEAANSCVAEEKSHENNDTCSVCCFGGDLILCDGCPSSFHSDCLGPKRDPDGLDGTWLCPSCCCRICCQPKRKQEFANDIDDDILACVQCERKFHLGCVKATRIGQPNEVSSHMDNIIEKNNWFCHEVCGNMFLCLEKLLGIPNKLGNDLTWTLLKYNVSCDDGDFTDEEFHQRKRKLTVALGVLRESFGETIDPLSKKDLIEDVVFSRSSEKKRLNFRGFYTAIMEKGGKVSSVATIRIYGQKVAEIVFMATKKKYRRQGMCRLLMKGLEEQLINLGVGSLVLHSSKDAIDTWKKSFHFVEMTNEDKCKFVHYTFFEFQDTIMCLKPLNKESVLSH