AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32876

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32876.t1 MTR_3g103110 62.005 808 143 9 1 652 1 800 0.0 924
MS.gene32876.t1 MTR_7g109640 70.588 629 138 4 48 652 191 796 0.0 852
MS.gene32876.t1 MTR_7g109640 61.039 77 28 1 22 96 74 150 5.63e-17 85.5
MS.gene32876.t1 MTR_3g103120 66.332 597 129 3 56 652 317 841 0.0 756
MS.gene32876.t1 MTR_3g103120 40.940 149 21 2 1 96 1 135 2.04e-19 93.6
MS.gene32876.t1 MTR_5g024390 72.727 440 102 5 217 652 3 428 0.0 661
MS.gene32876.t1 MTR_5g024500 72.273 440 104 5 217 652 3 428 0.0 656
MS.gene32876.t1 MTR_5g071340 39.203 477 249 10 183 645 637 1086 8.41e-105 343
MS.gene32876.t1 MTR_3g464550 40.920 435 222 9 216 643 602 1008 3.77e-103 338
MS.gene32876.t1 MTR_3g103160 40.625 576 198 14 74 645 3 438 5.97e-93 295
MS.gene32876.t1 MTR_2g078040 35.189 449 258 9 200 643 746 1166 7.36e-78 271
MS.gene32876.t1 MTR_1g103830 32.483 431 269 4 214 643 603 1012 2.66e-66 237
MS.gene32876.t1 MTR_1g072130 31.818 440 266 7 214 645 809 1222 3.73e-64 231
MS.gene32876.t1 MTR_7g095140 31.132 318 191 5 337 649 13 307 8.51e-48 172
MS.gene32876.t1 MTR_1g068930 26.316 437 240 13 250 643 458 855 1.89e-41 162
MS.gene32876.t1 MTR_1g068930 26.316 437 240 13 250 643 495 892 2.31e-41 161
MS.gene32876.t1 MTR_7g102610 25.053 475 238 14 243 650 527 950 5.71e-37 148
MS.gene32876.t1 MTR_4g099530 25.566 442 262 14 216 643 110 498 5.07e-34 136
MS.gene32876.t1 MTR_4g057290 26.512 430 207 12 251 615 126 511 8.91e-31 127
MS.gene32876.t1 MTR_1g062330 24.619 459 242 12 251 645 386 804 1.26e-29 125
MS.gene32876.t1 MTR_4g056990 24.308 506 268 15 206 652 179 628 2.11e-29 124
MS.gene32876.t1 MTR_4g050090 23.837 516 268 15 206 646 179 644 8.10e-27 116
MS.gene32876.t1 MTR_6g061000 55.682 88 30 2 302 389 23 101 9.71e-22 90.9
MS.gene32876.t1 MTR_2g084425 29.101 189 113 6 463 647 847 1018 2.47e-17 87.0
MS.gene32876.t1 MTR_3g109988 31.492 181 96 6 435 608 191 350 9.16e-14 73.6
MS.gene32876.t1 MTR_3g110005 31.492 181 96 6 435 608 191 350 9.16e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32876.t1 AT5G58610 39.955 443 238 7 205 643 359 777 1.43e-100 327
MS.gene32876.t1 AT5G58610 39.955 443 238 7 205 643 590 1008 1.56e-98 324
MS.gene32876.t1 AT5G58610 39.955 443 238 7 205 643 590 1008 1.56e-98 324
MS.gene32876.t1 AT5G58610 39.955 443 238 7 205 643 590 1008 2.16e-98 325
MS.gene32876.t1 AT5G58610 39.955 443 238 7 205 643 581 999 3.76e-98 325
MS.gene32876.t1 AT5G58610 39.955 443 238 7 205 643 581 999 3.84e-98 325
MS.gene32876.t1 AT5G58610 37.868 441 224 7 205 643 581 973 1.08e-86 293
MS.gene32876.t1 AT5G58610 37.868 441 224 7 205 643 581 973 1.26e-86 293
MS.gene32876.t1 AT5G58610 39.642 391 208 7 205 591 590 956 2.50e-84 285
MS.gene32876.t1 AT5G58610 39.642 391 208 7 205 591 581 947 5.27e-84 284
MS.gene32876.t1 AT5G36740 32.054 443 260 8 209 643 540 949 7.62e-69 244
MS.gene32876.t1 AT5G36740 32.054 443 260 8 209 643 540 949 7.62e-69 244
MS.gene32876.t1 AT5G58610 38.244 353 190 7 205 553 581 909 9.15e-69 241
MS.gene32876.t1 AT1G05380 32.265 437 261 5 214 643 517 925 6.86e-67 238
MS.gene32876.t1 AT1G05380 32.265 437 261 5 214 643 517 925 6.86e-67 238
MS.gene32876.t1 AT1G05380 32.265 437 261 5 214 643 517 925 6.86e-67 238
MS.gene32876.t1 AT5G36740 31.473 448 266 8 209 643 387 806 1.53e-66 236
MS.gene32876.t1 AT3G14980 31.364 440 266 8 216 649 575 984 5.48e-64 229
MS.gene32876.t1 AT3G14980 31.364 440 266 8 216 649 620 1029 6.99e-64 229
MS.gene32876.t1 AT3G14980 31.364 440 266 8 216 649 620 1029 6.99e-64 229
MS.gene32876.t1 AT3G14980 31.364 440 266 8 216 649 620 1029 6.99e-64 229
MS.gene32876.t1 AT3G14980 31.364 440 266 8 216 649 620 1029 1.43e-63 228
MS.gene32876.t1 AT4G14920 29.933 451 284 6 202 646 562 986 4.33e-60 218
MS.gene32876.t1 AT4G14920 29.933 451 284 6 202 646 562 986 4.33e-60 218
MS.gene32876.t1 AT4G14920 29.933 451 284 6 202 646 562 986 4.34e-60 218
MS.gene32876.t1 AT5G36670 29.847 459 263 10 209 643 540 963 5.31e-60 218
MS.gene32876.t1 AT5G36670 29.847 459 263 10 209 643 540 963 5.31e-60 218
MS.gene32876.t1 AT5G36740 31.688 385 222 8 209 585 540 891 1.47e-58 212
MS.gene32876.t1 AT5G36740 31.688 385 222 8 209 585 540 891 1.47e-58 212
MS.gene32876.t1 AT5G36670 31.688 385 222 8 209 585 540 891 1.47e-58 212
MS.gene32876.t1 AT5G36670 29.310 464 269 10 209 643 387 820 1.29e-57 211
MS.gene32876.t1 AT5G36670 29.310 464 269 10 209 643 540 973 2.31e-57 210
MS.gene32876.t1 AT5G63900 36.164 318 175 9 331 645 250 542 5.65e-57 202
MS.gene32876.t1 AT3G14980 30.435 345 204 8 216 554 620 934 1.74e-42 165
MS.gene32876.t1 AT3G53680 28.412 447 224 14 218 618 409 805 1.77e-42 165
MS.gene32876.t1 AT3G53680 28.412 447 224 14 218 618 411 807 2.00e-42 164
MS.gene32876.t1 AT2G37520 25.615 488 241 15 218 645 392 817 1.88e-40 159
MS.gene32876.t1 AT2G27980 26.190 504 264 14 211 646 597 1060 2.76e-37 149
MS.gene32876.t1 AT2G36720 25.054 459 240 13 251 647 557 973 5.38e-37 149
MS.gene32876.t1 AT2G36720 25.054 459 240 13 251 647 557 973 5.38e-37 149

Find 122 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACATTGTTGTTTGCATTT+TGG 0.154123 3.1:-81610405 None:intergenic
GTTGCAACTATAAGAATTTA+TGG 0.208645 3.1:+81610888 MS.gene32876:CDS
AAGGCCATATAGGTCTATTT+AGG 0.215735 3.1:-81611169 None:intergenic
TCTAAGAGAAATGTAGTTTC+TGG 0.220087 3.1:-81609311 None:intergenic
TTTCTGGCATTGTTAGGTTC+TGG 0.223276 3.1:-81609295 None:intergenic
CCAACTATTGATGCTTTATC+TGG 0.251503 3.1:+81610756 MS.gene32876:CDS
TTCTGTCTGAAGAAGCTATT+AGG 0.283860 3.1:+81610582 MS.gene32876:CDS
AGGTTGCAAATAAAATAAAT+TGG 0.285418 3.1:+81610616 MS.gene32876:CDS
TAGGTCTATTTAGGGATTTA+AGG 0.304954 3.1:-81611160 None:intergenic
GTTTGTTCTATTTGTGGTTT+GGG 0.311387 3.1:+81610261 MS.gene32876:CDS
TTCTGGCATTGTTAGGTTCT+GGG 0.312212 3.1:-81609294 None:intergenic
GCTATTAGGGAAACCAATTA+AGG 0.314529 3.1:+81610596 MS.gene32876:CDS
GTTGATAAAGAATAAAGTTT+TGG 0.317891 3.1:+81609903 MS.gene32876:CDS
AAAGGTATTCACTTGTTTCT+TGG 0.322354 3.1:+81609881 MS.gene32876:CDS
GCATTCCACCTCGTTTGTTT+AGG 0.323033 3.1:+81610318 MS.gene32876:CDS
TGTGTAAAGGCTACAAGATT+TGG 0.323605 3.1:+81610489 MS.gene32876:CDS
AGGCCATATAGGTCTATTTA+GGG 0.326281 3.1:-81611168 None:intergenic
AATCCCTAAATAGACCTATA+TGG 0.346948 3.1:+81611165 MS.gene32876:CDS
ATGTAGTTTCTGGCATTGTT+AGG 0.366578 3.1:-81609301 None:intergenic
TGTTTGTTCTATTTGTGGTT+TGG 0.372212 3.1:+81610260 MS.gene32876:CDS
GAAAATGGGTAAAGTCATTT+CGG 0.376245 3.1:+81610866 MS.gene32876:CDS
TATGGCCTTGTATTGCTTGA+TGG 0.376913 3.1:+81611183 MS.gene32876:CDS
TTAGGTTCTGGGCAGTTCTC+AGG 0.378707 3.1:-81609283 None:intergenic
CGTGTTAATTTCACTATCAC+TGG 0.385095 3.1:+81610015 MS.gene32876:CDS
CCCTACTTCAGAACTTGCTT+CGG 0.386240 3.1:-81610205 None:intergenic
CCAGATAAAGCATCAATAGT+TGG 0.388520 3.1:-81610756 None:intergenic
AGTAACAATGTTGTCAAAAG+AGG 0.388998 3.1:+81609955 MS.gene32876:CDS
AACACCATCATTATTTGCTT+CGG 0.389411 3.1:-81610241 None:intergenic
TTTAGGTCTCGATCAAGTTC+CGG 0.399851 3.1:+81610335 MS.gene32876:CDS
TCAGGTTCTATGTTGAAATC+AGG 0.401611 3.1:-81609265 None:intergenic
AGTATTAAAGATGAGTATAA+TGG 0.402129 3.1:+81609801 MS.gene32876:CDS
GATGGTGTTTGTTCTATTTG+TGG 0.402818 3.1:+81610255 MS.gene32876:CDS
CAAATTGACACTTGTCTTCA+CGG 0.405716 3.1:-81611097 None:intergenic
TTCTTCAATGCAACTCTCGC+AGG 0.405765 3.1:-81609338 None:intergenic
ACCATCCACTACTATCTTGT+TGG 0.407099 3.1:+81610071 MS.gene32876:CDS
ATGGAGAATTCAGAGGTTTA+CGG 0.411419 3.1:+81609820 MS.gene32876:CDS
GCTGCTTCCTCGGATTCTCT+TGG 0.429778 3.1:-81609493 None:intergenic
CCCACCGAATTAGTAACTTC+TGG 0.432390 3.1:-81609703 None:intergenic
TAGTACGGTGTCAGCATCAA+TGG 0.432709 3.1:+81609651 MS.gene32876:CDS
TCTGTCTGAAGAAGCTATTA+GGG 0.432712 3.1:+81610583 MS.gene32876:CDS
TTTCACTATCACTGGATTTG+AGG 0.433458 3.1:+81610023 MS.gene32876:CDS
ATCAAGTTCCGGATGGTGAT+TGG 0.433575 3.1:+81610346 MS.gene32876:CDS
CATAAACGCTTGAATTTCCA+TGG 0.434704 3.1:+81610822 MS.gene32876:CDS
TATAAGAATTTATGGTCAAA+AGG 0.441015 3.1:+81610896 MS.gene32876:CDS
TCAGAGTTCGCATGATCAAA+AGG 0.443317 3.1:+81610131 MS.gene32876:CDS
CAGATAAAGCATCAATAGTT+GGG 0.446006 3.1:-81610755 None:intergenic
TGCTATTGATGCTGCTTCCT+CGG 0.447944 3.1:-81609503 None:intergenic
TGTTGCTTCTGCTGTTTCCT+CGG 0.450642 3.1:-81609437 None:intergenic
TCAGAGGATTGTGGTAGAAG+AGG 0.451281 3.1:+81609775 MS.gene32876:CDS
CAGAGGATTGTGGTAGAAGA+GGG 0.460042 3.1:+81609776 MS.gene32876:CDS
TGAACCAGAAGTTACTAATT+CGG 0.467506 3.1:+81609699 MS.gene32876:CDS
CAAGCAATACAAGGCCATAT+AGG 0.468400 3.1:-81611179 None:intergenic
CTGCAGTCGAAGGGTGTTTG+AGG 0.471352 3.1:-81609372 None:intergenic
GAGAAACAGTTGACACGCTT+AGG 0.478300 3.1:+81610996 MS.gene32876:CDS
AGGCTCATGCTGGTTGTACA+AGG 0.491245 3.1:+81610043 MS.gene32876:CDS
TTCAACCGTAACAGAGCTAC+TGG 0.493556 3.1:-81609397 None:intergenic
AAATTGACACTTGTCTTCAC+GGG 0.497364 3.1:-81611096 None:intergenic
CAGAGTTCGCATGATCAAAA+GGG 0.499686 3.1:+81610132 MS.gene32876:CDS
GAGAGGGAAGGTATCAAAGA+GGG 0.502506 3.1:+81609846 MS.gene32876:CDS
TTGTCTTCGATATTGTTCCT+TGG 0.503462 3.1:-81610943 None:intergenic
GGAAGACGGAAGGTCATTGT+TGG 0.514903 3.1:+81610092 MS.gene32876:CDS
ACTGGATTTGAGGCTCATGC+TGG 0.514944 3.1:+81610033 MS.gene32876:CDS
TATCAAAGAGGGAAGGTACA+AGG 0.524975 3.1:+81609857 MS.gene32876:CDS
ATCATCAGAAGTTAATTCAT+CGG 0.526543 3.1:-81609539 None:intergenic
CCACGTGTCTATAGCATCCT+CGG 0.528623 3.1:-81611045 None:intergenic
CCGAAGCAAGTTCTGAAGTA+GGG 0.528703 3.1:+81610205 MS.gene32876:CDS
GCTACTGGTGCTGCAGTCGA+AGG 0.528854 3.1:-81609382 None:intergenic
TCTTCAATGCAACTCTCGCA+GGG 0.531694 3.1:-81609337 None:intergenic
CAGCACCAGTAGCTCTGTTA+CGG 0.536561 3.1:+81609392 MS.gene32876:CDS
GTTACTAATTCGGTGGGTAG+TGG 0.540215 3.1:+81609709 MS.gene32876:CDS
TGCAGTCGAAGGGTGTTTGA+GGG 0.545311 3.1:-81609371 None:intergenic
TCCGAAGCAAGTTCTGAAGT+AGG 0.548155 3.1:+81610204 MS.gene32876:CDS
GAGAAGAATTCAGAGGATTG+TGG 0.552564 3.1:+81609766 MS.gene32876:CDS
ACGCTTAGGAGTTGAAAGCT+TGG 0.553379 3.1:+81611010 MS.gene32876:CDS
TGCGAGAGTTGCATTGAAGA+AGG 0.557070 3.1:+81609340 MS.gene32876:CDS
AACTACCATCAAGCAATACA+AGG 0.564139 3.1:-81611188 None:intergenic
GGACAAAACCAATCACCATC+CGG 0.566171 3.1:-81610354 None:intergenic
CAGAGGTTTACGGTAAGAGA+GGG 0.567218 3.1:+81609830 MS.gene32876:CDS
TCGGTGGGTAGTGGTAAAAG+AGG 0.571961 3.1:+81609718 MS.gene32876:CDS
AAATCACATTATAGAAACCA+TGG 0.572412 3.1:-81610839 None:intergenic
GGTAGCCACGAAAACTATCT+CGG 0.575564 3.1:-81610922 None:intergenic
TCAGAGGTTTACGGTAAGAG+AGG 0.577597 3.1:+81609829 MS.gene32876:CDS
GTAACAATGTTGTCAAAAGA+GGG 0.581494 3.1:+81609956 MS.gene32876:CDS
GAGTATAATGGAGAATTCAG+AGG 0.582802 3.1:+81609813 MS.gene32876:CDS
TGTTCTATTTGTGGTTTGGG+AGG 0.585455 3.1:+81610264 MS.gene32876:CDS
ACTACTATCTTGTTGGAAGA+CGG 0.590421 3.1:+81610078 MS.gene32876:CDS
AAAGCGACCAAGAGAATCCG+AGG 0.592053 3.1:+81609486 MS.gene32876:CDS
AGAGAGGGAAGGTATCAAAG+AGG 0.595325 3.1:+81609845 MS.gene32876:CDS
CTACTGGTGCTGCAGTCGAA+GGG 0.596856 3.1:-81609381 None:intergenic
ACCAGAAGTTACTAATTCGG+TGG 0.600989 3.1:+81609702 MS.gene32876:CDS
AAAGAGATTGAGAGAATCCG+AGG 0.612293 3.1:+81609420 MS.gene32876:CDS
GTCATTGTTGGAATGTCAGA+GGG 0.614589 3.1:+81610104 MS.gene32876:CDS
AGAGGGAAGGTACAAGGGAA+AGG 0.618121 3.1:+81609863 MS.gene32876:CDS
GTCTTCCAACAAGATAGTAG+TGG 0.619064 3.1:-81610076 None:intergenic
TTCTGAAGCAACTTCTGACG+AGG 0.620210 3.1:+81609585 MS.gene32876:CDS
GGTCATTGTTGGAATGTCAG+AGG 0.622266 3.1:+81610103 MS.gene32876:CDS
AAAGAAGAGAAAGTTGAATG+TGG 0.626130 3.1:+81610704 MS.gene32876:CDS
CCAGAAGTTACTAATTCGGT+GGG 0.626761 3.1:+81609703 MS.gene32876:CDS
TCCAACAAGATAGTAGTGGA+TGG 0.630549 3.1:-81610072 None:intergenic
GTTTCCGAAGCAAATAATGA+TGG 0.631631 3.1:+81610237 MS.gene32876:CDS
GAGAGTTGCATTGAAGAAGG+AGG 0.635933 3.1:+81609343 MS.gene32876:CDS
GGGTAGTGGTAAAAGAGGAA+AGG 0.636646 3.1:+81609723 MS.gene32876:CDS
AGAGTTGCATTGAAGAAGGA+GGG 0.637310 3.1:+81609344 MS.gene32876:CDS
ATCAAAGAGGGAAGGTACAA+GGG 0.637578 3.1:+81609858 MS.gene32876:CDS
CTATCTTGTTGGAAGACGGA+AGG 0.639850 3.1:+81610082 MS.gene32876:CDS
CAAACGAGGTGGAATGCAGA+AGG 0.643587 3.1:-81610312 None:intergenic
GGGAAGGTATCAAAGAGGGA+AGG 0.651040 3.1:+81609850 MS.gene32876:CDS
AGAGTTCGCATGATCAAAAG+GGG 0.652963 3.1:+81610133 MS.gene32876:CDS
TCTATGTTGAAATCAGGAGG+TGG 0.653673 3.1:-81609259 None:intergenic
GGTTCTATGTTGAAATCAGG+AGG 0.654128 3.1:-81609262 None:intergenic
GGTTTACGGTAAGAGAGGGA+AGG 0.658054 3.1:+81609834 MS.gene32876:CDS
AAGATTTGGATCTAGTCACA+TGG 0.660288 3.1:+81610503 MS.gene32876:CDS
AATTTGAGTAGTGATGATGA+TGG 0.661624 3.1:+81610651 MS.gene32876:CDS
AAGGAACAATATCGAAGACA+AGG 0.663403 3.1:+81610945 MS.gene32876:CDS
GGTCTCGATCAAGTTCCGGA+TGG 0.663625 3.1:+81610339 MS.gene32876:CDS
TACAATGGAGAAGAATTCAG+AGG 0.668290 3.1:+81609759 MS.gene32876:CDS
CCGAGGATGCTATAGACACG+TGG 0.685477 3.1:+81611045 MS.gene32876:CDS
TTGAGTAGTGATGATGATGG+CGG 0.685672 3.1:+81610654 MS.gene32876:CDS
CGAGACCTAAACAAACGAGG+TGG 0.704849 3.1:-81610323 None:intergenic
CGTGTCTATAGCATCCTCGG+AGG 0.738184 3.1:-81611042 None:intergenic
TCAAAAGGGGAATCATTGTG+TGG 0.749018 3.1:+81610146 MS.gene32876:CDS
GATCGAGACCTAAACAAACG+AGG 0.763651 3.1:-81610326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTTGCAAATAAAATAAAT+TGG + chr3.1:81610616-81610635 MS.gene32876:CDS 20.0%
!! AGTATTAAAGATGAGTATAA+TGG + chr3.1:81609801-81609820 MS.gene32876:CDS 20.0%
!! TATAAGAATTTATGGTCAAA+AGG + chr3.1:81610896-81610915 MS.gene32876:CDS 20.0%
!!! AATGTGATTTTAGAGAAAAT+GGG + chr3.1:81610852-81610871 MS.gene32876:CDS 20.0%
!!! ATTTTATTTGCAACCTTAAT+TGG - chr3.1:81610612-81610631 None:intergenic 20.0%
!!! GTTGATAAAGAATAAAGTTT+TGG + chr3.1:81609903-81609922 MS.gene32876:CDS 20.0%
!!! TAATGTGATTTTAGAGAAAA+TGG + chr3.1:81610851-81610870 MS.gene32876:CDS 20.0%
! AAATCACATTATAGAAACCA+TGG - chr3.1:81610842-81610861 None:intergenic 25.0%
! ATCATCAGAAGTTAATTCAT+CGG - chr3.1:81609542-81609561 None:intergenic 25.0%
! CAGTTCGATTAAAAAATCTA+CGG + chr3.1:81609627-81609646 MS.gene32876:CDS 25.0%
! GTTGCAACTATAAGAATTTA+TGG + chr3.1:81610888-81610907 MS.gene32876:CDS 25.0%
! TAAAAAATCTACGGTTAGTA+CGG + chr3.1:81609636-81609655 MS.gene32876:CDS 25.0%
!!! AAGAATAAAGTTTTGGTTTC+TGG + chr3.1:81609910-81609929 MS.gene32876:CDS 25.0%
!!! AGAATAAAGTTTTGGTTTCT+GGG + chr3.1:81609911-81609930 MS.gene32876:CDS 25.0%
!!! GGTTTTAAAAATGAGTACAA+TGG + chr3.1:81609744-81609763 MS.gene32876:CDS 25.0%
AAAGAAGAGAAAGTTGAATG+TGG + chr3.1:81610704-81610723 MS.gene32876:CDS 30.0%
AACACCATCATTATTTGCTT+CGG - chr3.1:81610244-81610263 None:intergenic 30.0%
AATCCCTAAATAGACCTATA+TGG + chr3.1:81611165-81611184 MS.gene32876:CDS 30.0%
AGTAACAATGTTGTCAAAAG+AGG + chr3.1:81609955-81609974 MS.gene32876:CDS 30.0%
GAAAATGGGTAAAGTCATTT+CGG + chr3.1:81610866-81610885 MS.gene32876:CDS 30.0%
GTAACAATGTTGTCAAAAGA+GGG + chr3.1:81609956-81609975 MS.gene32876:CDS 30.0%
GTTTGTTCTATTTGTGGTTT+GGG + chr3.1:81610261-81610280 MS.gene32876:CDS 30.0%
TAGGTCTATTTAGGGATTTA+AGG - chr3.1:81611163-81611182 None:intergenic 30.0%
TCTAAGAGAAATGTAGTTTC+TGG - chr3.1:81609314-81609333 None:intergenic 30.0%
TGAACCAGAAGTTACTAATT+CGG + chr3.1:81609699-81609718 MS.gene32876:CDS 30.0%
TGTTTGTTCTATTTGTGGTT+TGG + chr3.1:81610260-81610279 MS.gene32876:CDS 30.0%
! AATTTGAGTAGTGATGATGA+TGG + chr3.1:81610651-81610670 MS.gene32876:CDS 30.0%
! CAGATAAAGCATCAATAGTT+GGG - chr3.1:81610758-81610777 None:intergenic 30.0%
! CATATTTTGCAACAACAAGT+TGG - chr3.1:81610378-81610397 None:intergenic 30.0%
! TGTGAGCAAAATTTTCACTT+TGG + chr3.1:81610465-81610484 MS.gene32876:CDS 30.0%
! TTTTCACTTTGGATGTGTAA+AGG + chr3.1:81610476-81610495 MS.gene32876:CDS 30.0%
!! AAAGGTATTCACTTGTTTCT+TGG + chr3.1:81609881-81609900 MS.gene32876:CDS 30.0%
!!! AAAGATGTCGTTTTTAGTAG+AGG + chr3.1:81610792-81610811 MS.gene32876:CDS 30.0%
!!! AGAGGGAGTTTATTTTATGA+TGG + chr3.1:81609973-81609992 MS.gene32876:CDS 30.0%
!!! CACATTGTTGTTTGCATTTT+GGG - chr3.1:81610407-81610426 None:intergenic 30.0%
AAATTGACACTTGTCTTCAC+GGG - chr3.1:81611099-81611118 None:intergenic 35.0%
AAGATTTGGATCTAGTCACA+TGG + chr3.1:81610503-81610522 MS.gene32876:CDS 35.0%
AAGGAACAATATCGAAGACA+AGG + chr3.1:81610945-81610964 MS.gene32876:CDS 35.0%
AAGGCCATATAGGTCTATTT+AGG - chr3.1:81611172-81611191 None:intergenic 35.0%
ACTACTATCTTGTTGGAAGA+CGG + chr3.1:81610078-81610097 MS.gene32876:CDS 35.0%
AGGCCATATAGGTCTATTTA+GGG - chr3.1:81611171-81611190 None:intergenic 35.0%
ATGGAGAATTCAGAGGTTTA+CGG + chr3.1:81609820-81609839 MS.gene32876:CDS 35.0%
CAAATTGACACTTGTCTTCA+CGG - chr3.1:81611100-81611119 None:intergenic 35.0%
CATAAACGCTTGAATTTCCA+TGG + chr3.1:81610822-81610841 MS.gene32876:CDS 35.0%
CCAACTATTGATGCTTTATC+TGG + chr3.1:81610756-81610775 MS.gene32876:CDS 35.0%
CGTGTTAATTTCACTATCAC+TGG + chr3.1:81610015-81610034 MS.gene32876:CDS 35.0%
GATGGTGTTTGTTCTATTTG+TGG + chr3.1:81610255-81610274 MS.gene32876:CDS 35.0%
GCAATGTTAAAAACAGGAAC+TGG + chr3.1:81610529-81610548 MS.gene32876:CDS 35.0%
GCTATTAGGGAAACCAATTA+AGG + chr3.1:81610596-81610615 MS.gene32876:CDS 35.0%
GTTTCCGAAGCAAATAATGA+TGG + chr3.1:81610237-81610256 MS.gene32876:CDS 35.0%
TACAATGGAGAAGAATTCAG+AGG + chr3.1:81609759-81609778 MS.gene32876:CDS 35.0%
TCAGGTTCTATGTTGAAATC+AGG - chr3.1:81609268-81609287 None:intergenic 35.0%
TCTGTCTGAAGAAGCTATTA+GGG + chr3.1:81610583-81610602 MS.gene32876:CDS 35.0%
TGGAGAGCAATGTTAAAAAC+AGG + chr3.1:81610523-81610542 MS.gene32876:CDS 35.0%
TGTGTAAAGGCTACAAGATT+TGG + chr3.1:81610489-81610508 MS.gene32876:CDS 35.0%
TTCTGTCTGAAGAAGCTATT+AGG + chr3.1:81610582-81610601 MS.gene32876:CDS 35.0%
TTGTCTTCGATATTGTTCCT+TGG - chr3.1:81610946-81610965 None:intergenic 35.0%
TTTCACTATCACTGGATTTG+AGG + chr3.1:81610023-81610042 MS.gene32876:CDS 35.0%
! CCAGATAAAGCATCAATAGT+TGG - chr3.1:81610759-81610778 None:intergenic 35.0%
! GAGTATAATGGAGAATTCAG+AGG + chr3.1:81609813-81609832 MS.gene32876:CDS 35.0%
!! ATGTAGTTTCTGGCATTGTT+AGG - chr3.1:81609304-81609323 None:intergenic 35.0%
!!! CAAAAGCGTTTGATTTTGCT+AGG + chr3.1:81611069-81611088 MS.gene32876:CDS 35.0%
!!! GCACATTGTTGTTTGCATTT+TGG - chr3.1:81610408-81610427 None:intergenic 35.0%
AAAGAGATTGAGAGAATCCG+AGG + chr3.1:81609420-81609439 MS.gene32876:CDS 40.0%
ACCAGAAGTTACTAATTCGG+TGG + chr3.1:81609702-81609721 MS.gene32876:CDS 40.0%
ACCATCCACTACTATCTTGT+TGG + chr3.1:81610071-81610090 MS.gene32876:CDS 40.0%
AGAGTTCGCATGATCAAAAG+GGG + chr3.1:81610133-81610152 MS.gene32876:CDS 40.0%
AGAGTTGCATTGAAGAAGGA+GGG + chr3.1:81609344-81609363 MS.gene32876:CDS 40.0%
CAAGCAATACAAGGCCATAT+AGG - chr3.1:81611182-81611201 None:intergenic 40.0%
CAGAGTTCGCATGATCAAAA+GGG + chr3.1:81610132-81610151 MS.gene32876:CDS 40.0%
CCAGAAGTTACTAATTCGGT+GGG + chr3.1:81609703-81609722 MS.gene32876:CDS 40.0%
GAGAAGAATTCAGAGGATTG+TGG + chr3.1:81609766-81609785 MS.gene32876:CDS 40.0%
GGTTCTATGTTGAAATCAGG+AGG - chr3.1:81609265-81609284 None:intergenic 40.0%
GTCATTGTTGGAATGTCAGA+GGG + chr3.1:81610104-81610123 MS.gene32876:CDS 40.0%
GTCTTCCAACAAGATAGTAG+TGG - chr3.1:81610079-81610098 None:intergenic 40.0%
TCAAAAGGGGAATCATTGTG+TGG + chr3.1:81610146-81610165 MS.gene32876:CDS 40.0%
TCAGAGTTCGCATGATCAAA+AGG + chr3.1:81610131-81610150 MS.gene32876:CDS 40.0%
TCTATGTTGAAATCAGGAGG+TGG - chr3.1:81609262-81609281 None:intergenic 40.0%
TTCTGGCATTGTTAGGTTCT+GGG - chr3.1:81609297-81609316 None:intergenic 40.0%
TTTAGGTCTCGATCAAGTTC+CGG + chr3.1:81610335-81610354 MS.gene32876:CDS 40.0%
! ATCAAAGAGGGAAGGTACAA+GGG + chr3.1:81609858-81609877 MS.gene32876:CDS 40.0%
! TATCAAAGAGGGAAGGTACA+AGG + chr3.1:81609857-81609876 MS.gene32876:CDS 40.0%
! TCCAACAAGATAGTAGTGGA+TGG - chr3.1:81610075-81610094 None:intergenic 40.0%
! TGTTCTATTTGTGGTTTGGG+AGG + chr3.1:81610264-81610283 MS.gene32876:CDS 40.0%
! TTTCTGGCATTGTTAGGTTC+TGG - chr3.1:81609298-81609317 None:intergenic 40.0%
!! TGGTTTTGCAGTGTAGTTTG+CGG + chr3.1:81610549-81610568 MS.gene32876:CDS 40.0%
!! TTGAGTAGTGATGATGATGG+CGG + chr3.1:81610654-81610673 MS.gene32876:CDS 40.0%
ACGCTTAGGAGTTGAAAGCT+TGG + chr3.1:81611010-81611029 MS.gene32876:CDS 45.0%
ATCAAGTTCCGGATGGTGAT+TGG + chr3.1:81610346-81610365 MS.gene32876:CDS 45.0%
CAGAGGATTGTGGTAGAAGA+GGG + chr3.1:81609776-81609795 MS.gene32876:CDS 45.0%
CAGAGGTTTACGGTAAGAGA+GGG + chr3.1:81609830-81609849 MS.gene32876:CDS 45.0%
CCCACCGAATTAGTAACTTC+TGG - chr3.1:81609706-81609725 None:intergenic 45.0%
CTATCTTGTTGGAAGACGGA+AGG + chr3.1:81610082-81610101 MS.gene32876:CDS 45.0%
GAGAAACAGTTGACACGCTT+AGG + chr3.1:81610996-81611015 MS.gene32876:CDS 45.0%
GAGAGTTGCATTGAAGAAGG+AGG + chr3.1:81609343-81609362 MS.gene32876:CDS 45.0%
GATCGAGACCTAAACAAACG+AGG - chr3.1:81610329-81610348 None:intergenic 45.0%
GCATTCCACCTCGTTTGTTT+AGG + chr3.1:81610318-81610337 MS.gene32876:CDS 45.0%
GGACAAAACCAATCACCATC+CGG - chr3.1:81610357-81610376 None:intergenic 45.0%
GGTAGCCACGAAAACTATCT+CGG - chr3.1:81610925-81610944 None:intergenic 45.0%
GGTCATTGTTGGAATGTCAG+AGG + chr3.1:81610103-81610122 MS.gene32876:CDS 45.0%
TCAGAGGATTGTGGTAGAAG+AGG + chr3.1:81609775-81609794 MS.gene32876:CDS 45.0%
TCAGAGGTTTACGGTAAGAG+AGG + chr3.1:81609829-81609848 MS.gene32876:CDS 45.0%
TCTTCAATGCAACTCTCGCA+GGG - chr3.1:81609340-81609359 None:intergenic 45.0%
TGCGAGAGTTGCATTGAAGA+AGG + chr3.1:81609340-81609359 MS.gene32876:CDS 45.0%
TTCAACCGTAACAGAGCTAC+TGG - chr3.1:81609400-81609419 None:intergenic 45.0%
TTCTTCAATGCAACTCTCGC+AGG - chr3.1:81609341-81609360 None:intergenic 45.0%
! CCCTACTTCAGAACTTGCTT+CGG - chr3.1:81610208-81610227 None:intergenic 45.0%
! GATAGTTTTCGTGGCTACCA+AGG + chr3.1:81610926-81610945 MS.gene32876:CDS 45.0%
! GGGTAGTGGTAAAAGAGGAA+AGG + chr3.1:81609723-81609742 MS.gene32876:CDS 45.0%
! GTTACTAATTCGGTGGGTAG+TGG + chr3.1:81609709-81609728 MS.gene32876:CDS 45.0%
! TAGTACGGTGTCAGCATCAA+TGG + chr3.1:81609651-81609670 MS.gene32876:CDS 45.0%
! TGCTATTGATGCTGCTTCCT+CGG - chr3.1:81609506-81609525 None:intergenic 45.0%
!! AGAGAGGGAAGGTATCAAAG+AGG + chr3.1:81609845-81609864 MS.gene32876:CDS 45.0%
!! CCGAAGCAAGTTCTGAAGTA+GGG + chr3.1:81610205-81610224 MS.gene32876:CDS 45.0%
!! GAGAGGGAAGGTATCAAAGA+GGG + chr3.1:81609846-81609865 MS.gene32876:CDS 45.0%
!! GGGACTACTGTGTTTTGTTG+TGG + chr3.1:81609931-81609950 MS.gene32876:CDS 45.0%
!! GGTTTTGCAGTGTAGTTTGC+GGG + chr3.1:81610550-81610569 MS.gene32876:CDS 45.0%
!! TCCGAAGCAAGTTCTGAAGT+AGG + chr3.1:81610204-81610223 MS.gene32876:CDS 45.0%
!! TGTTGCTTCTGCTGTTTCCT+CGG - chr3.1:81609440-81609459 None:intergenic 45.0%
!! TTCTGAAGCAACTTCTGACG+AGG + chr3.1:81609585-81609604 MS.gene32876:CDS 45.0%
AAAGCGACCAAGAGAATCCG+AGG + chr3.1:81609486-81609505 MS.gene32876:CDS 50.0%
CAAACGAGGTGGAATGCAGA+AGG - chr3.1:81610315-81610334 None:intergenic 50.0%
CCACGTGTCTATAGCATCCT+CGG - chr3.1:81611048-81611067 None:intergenic 50.0%
CGAGACCTAAACAAACGAGG+TGG - chr3.1:81610326-81610345 None:intergenic 50.0%
GGAAGACGGAAGGTCATTGT+TGG + chr3.1:81610092-81610111 MS.gene32876:CDS 50.0%
GGTTTACGGTAAGAGAGGGA+AGG + chr3.1:81609834-81609853 MS.gene32876:CDS 50.0%
! ACTGGATTTGAGGCTCATGC+TGG + chr3.1:81610033-81610052 MS.gene32876:CDS 50.0%
! AGAGGGAAGGTACAAGGGAA+AGG + chr3.1:81609863-81609882 MS.gene32876:CDS 50.0%
! AGGCTCATGCTGGTTGTACA+AGG + chr3.1:81610043-81610062 MS.gene32876:CDS 50.0%
! CAGCACCAGTAGCTCTGTTA+CGG + chr3.1:81609392-81609411 MS.gene32876:CDS 50.0%
! GGTTGCCGAGATAGTTTTCG+TGG + chr3.1:81610917-81610936 MS.gene32876:CDS 50.0%
! TCGGTGGGTAGTGGTAAAAG+AGG + chr3.1:81609718-81609737 MS.gene32876:CDS 50.0%
!! GGGAAGGTATCAAAGAGGGA+AGG + chr3.1:81609850-81609869 MS.gene32876:CDS 50.0%
!! TGCAGTCGAAGGGTGTTTGA+GGG - chr3.1:81609374-81609393 None:intergenic 50.0%
!! TTAGGTTCTGGGCAGTTCTC+AGG - chr3.1:81609286-81609305 None:intergenic 50.0%
!!! CTTGGTTTTGCATTCCTCCG+AGG + chr3.1:81611028-81611047 MS.gene32876:CDS 50.0%
CCGAGGATGCTATAGACACG+TGG + chr3.1:81611045-81611064 MS.gene32876:CDS 55.0%
CGTGTCTATAGCATCCTCGG+AGG - chr3.1:81611045-81611064 None:intergenic 55.0%
GCTGCTTCCTCGGATTCTCT+TGG - chr3.1:81609496-81609515 None:intergenic 55.0%
GGTCTCGATCAAGTTCCGGA+TGG + chr3.1:81610339-81610358 MS.gene32876:CDS 55.0%
!! CTACTGGTGCTGCAGTCGAA+GGG - chr3.1:81609384-81609403 None:intergenic 55.0%
!! CTGCAGTCGAAGGGTGTTTG+AGG - chr3.1:81609375-81609394 None:intergenic 55.0%
!! GCTACTGGTGCTGCAGTCGA+AGG - chr3.1:81609385-81609404 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 81609244 81611202 81609244 ID=MS.gene32876
chr3.1 mRNA 81609244 81611202 81609244 ID=MS.gene32876.t1;Parent=MS.gene32876
chr3.1 exon 81609244 81611202 81609244 ID=MS.gene32876.t1.exon1;Parent=MS.gene32876.t1
chr3.1 CDS 81609244 81611202 81609244 ID=cds.MS.gene32876.t1;Parent=MS.gene32876.t1
Gene Sequence

>MS.gene32876

ATGGATTCTTGTTCACCACCTCCTGATTTCAACATAGAACCTGAGAACTGCCCAGAACCTAACAATGCCAGAAACTACATTTCTCTTAGAAAACCCTGCGAGAGTTGCATTGAAGAAGGAGGGTGTTCCCTCAAACACCCTTCGACTGCAGCACCAGTAGCTCTGTTACGGTTGAAAAAGAGATTGAGAGAATCCGAGGAAACAGCAGAAGCAACAATTTCTTTGTCTCTATCACAGTCGAAAAAGCGACCAAGAGAATCCGAGGAAGCAGCATCAATAGCAATTTCTTCAGAATCCGATGAATTAACTTCTGATGATGATTCTGAAGTCTCTAGTTGCAGTTCTGAAGCAACTTCTGACGAGGATTTTGAAGTCTCGAGTTTCAGTTCGATTAAAAAATCTACGGTTAGTACGGTGTCAGCATCAATGGAAAATGAGAAGCGTGTGACTCGATCTGAACCAGAAGTTACTAATTCGGTGGGTAGTGGTAAAAGAGGAAAGGTTTTAAAAATGAGTACAATGGAGAAGAATTCAGAGGATTGTGGTAGAAGAGGGAAAGTATTAAAGATGAGTATAATGGAGAATTCAGAGGTTTACGGTAAGAGAGGGAAGGTATCAAAGAGGGAAGGTACAAGGGAAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATAAAGTTTTGGTTTCTGGGACTACTGTGTTTTGTTGTGGTAGTAACAATGTTGTCAAAAGAGGGAGTTTATTTTATGATGGCATAGTTTGTGATTGTTGTCGTGTTAATTTCACTATCACTGGATTTGAGGCTCATGCTGGTTGTACAAGGCATAGACCATCCACTACTATCTTGTTGGAAGACGGAAGGTCATTGTTGGAATGTCAGAGGGAAGCTCAGAGTTCGCATGATCAAAAGGGGAATCATTGTGTGGCTGAAGCAGATTCTGAAGCACAAAATCATTGTGTTTCCGAAGCAAGTTCTGAAGTAGGGAATCACTGTGTTTCCGAAGCAAATAATGATGGTGTTTGTTCTATTTGTGGTTTGGGAGGTGATATAGTACTATGTGATCGATGTCCTTCTGCATTCCACCTCGTTTGTTTAGGTCTCGATCAAGTTCCGGATGGTGATTGGTTTTGTCCAACTTGTTGTTGCAAAATATGTTATCACCCAAAATGCAAACAACAATGTGCAGATGAAAATGATAACAATATTCTTGTTTGTGTTCAATGTGAGCAAAATTTTCACTTTGGATGTGTAAAGGCTACAAGATTTGGATCTAGTCACATGGAGAGCAATGTTAAAAACAGGAACTGGTTTTGCAGTGTAGTTTGCGGGAAGATGTTCTTCTGTCTGAAGAAGCTATTAGGGAAACCAATTAAGGTTGCAAATAAAATAAATTGGACACTGTTGAAGAATTTGAGTAGTGATGATGATGGCGGAGATTTTACTTCAAATGAGCTTAGTCAAAAGAAGAGAAAGTTGAATGTGGCTCTTGATGTATTGTATGAGAGTTTTAACCCAACTATTGATGCTTTATCTGGAAGAGAAATGATTAAAGATGTCGTTTTTAGTAGAGGCTCAAAACATAAACGCTTGAATTTCCATGGTTTCTATAATGTGATTTTAGAGAAAATGGGTAAAGTCATTTCGGTTGCAACTATAAGAATTTATGGTCAAAAGGTTGCCGAGATAGTTTTCGTGGCTACCAAGGAACAATATCGAAGACAAGGAATGTGTCGTTTGTTGATGCACGAGCTTGAGAAACAGTTGACACGCTTAGGAGTTGAAAGCTTGGTTTTGCATTCCTCCGAGGATGCTATAGACACGTGGACAAAAGCGTTTGATTTTGCTAGGATAACCCGTGAAGACAAGTGTCAATTTGTTGATAAAACTTTCTTAGAATTTCAGAACACTATCATGTGCCTTAAATCCCTAAATAGACCTATATGGCCTTGTATTGCTTGA
Protein sequence

>MS.gene32876.t1

MDSCSPPPDFNIEPENCPEPNNARNYISLRKPCESCIEEGGCSLKHPSTAAPVALLRLKKRLRESEETAEATISLSLSQSKKRPRESEEAASIAISSESDELTSDDDSEVSSCSSEATSDEDFEVSSFSSIKKSTVSTVSASMENEKRVTRSEPEVTNSVGSGKRGKVLKMSTMEKNSEDCGRRGKVLKMSIMENSEVYGKRGKVSKREGTRERYSLVSWLIKNKVLVSGTTVFCCGSNNVVKRGSLFYDGIVCDCCRVNFTITGFEAHAGCTRHRPSTTILLEDGRSLLECQREAQSSHDQKGNHCVAEADSEAQNHCVSEASSEVGNHCVSEANNDGVCSICGLGGDIVLCDRCPSAFHLVCLGLDQVPDGDWFCPTCCCKICYHPKCKQQCADENDNNILVCVQCEQNFHFGCVKATRFGSSHMESNVKNRNWFCSVVCGKMFFCLKKLLGKPIKVANKINWTLLKNLSSDDDGGDFTSNELSQKKRKLNVALDVLYESFNPTIDALSGREMIKDVVFSRGSKHKRLNFHGFYNVILEKMGKVISVATIRIYGQKVAEIVFVATKEQYRRQGMCRLLMHELEKQLTRLGVESLVLHSSEDAIDTWTKAFDFARITREDKCQFVDKTFLEFQNTIMCLKSLNRPIWPCIA