AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32885

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32885.t1 MTR_3g103030 89.752 322 26 2 1 316 1 321 0.0 599
MS.gene32885.t1 MTR_1g018090 48.501 367 102 11 1 298 1 349 3.46e-86 263
MS.gene32885.t1 MTR_1g018090 44.611 334 98 11 1 265 1 316 1.49e-60 196
MS.gene32885.t1 MTR_5g005110 40.361 332 149 13 1 307 1 308 1.68e-54 181
MS.gene32885.t1 MTR_1g106460 51.445 173 63 4 147 308 161 323 9.16e-47 160
MS.gene32885.t1 MTR_1g106470 78.161 87 19 0 222 308 195 281 2.14e-43 150
MS.gene32885.t1 MTR_1g106480 47.712 153 45 4 187 308 3 151 4.15e-33 120
MS.gene32885.t1 MTR_5g005110 49.630 135 53 5 136 262 136 263 4.40e-23 96.7
MS.gene32885.t1 MTR_5g079500 58.571 70 29 0 222 291 217 286 1.84e-22 95.9
MS.gene32885.t1 MTR_4g131160 52.632 76 36 0 222 297 195 270 2.41e-18 85.1
MS.gene32885.t1 MTR_4g131160 52.632 76 36 0 222 297 198 273 2.86e-18 85.1
MS.gene32885.t1 MTR_8g093500 60.606 66 25 1 222 287 114 178 1.62e-17 81.3
MS.gene32885.t1 MTR_1g080890 46.341 82 44 0 222 303 192 273 4.99e-16 78.2
MS.gene32885.t1 MTR_3g101810 53.968 63 29 0 223 285 171 233 1.00e-15 76.3
MS.gene32885.t1 MTR_7g069590 54.545 55 25 0 230 284 33 87 9.98e-15 70.9
MS.gene32885.t1 MTR_1g106460 38.889 126 56 4 147 261 161 276 5.10e-14 71.2
MS.gene32885.t1 MTR_1g019240 39.241 79 48 0 222 300 84 162 1.27e-13 70.1
MS.gene32885.t1 MTR_1g106470 74.419 43 11 0 222 264 195 237 1.34e-13 69.7
MS.gene32885.t1 MTR_1g084980 42.667 75 42 1 221 295 460 533 4.19e-13 70.1
MS.gene32885.t1 MTR_4g033295 53.030 66 30 1 222 286 117 182 1.16e-12 66.2
MS.gene32885.t1 MTR_4g033295 50.746 67 32 1 222 287 117 183 1.23e-12 65.9
MS.gene32885.t1 MTR_8g062240 31.847 157 88 5 139 286 69 215 4.00e-12 65.9
MS.gene32885.t1 MTR_4g065870 39.823 113 66 2 175 286 308 419 5.84e-12 66.2
MS.gene32885.t1 MTR_1g069155 43.939 66 37 0 221 286 315 380 6.29e-12 66.6
MS.gene32885.t1 MTR_7g099540 36.458 96 56 1 191 286 225 315 7.82e-12 66.2
MS.gene32885.t1 MTR_3g449770 30.822 146 89 2 154 292 233 373 8.57e-12 66.2
MS.gene32885.t1 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.20e-11 65.5
MS.gene32885.t1 MTR_1g052470 54.545 66 29 1 222 286 297 362 1.34e-11 65.1
MS.gene32885.t1 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.34e-11 65.5
MS.gene32885.t1 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.71e-11 65.1
MS.gene32885.t1 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.75e-11 65.1
MS.gene32885.t1 MTR_5g017040 42.188 64 37 0 236 299 118 181 1.88e-11 64.3
MS.gene32885.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.15e-11 64.7
MS.gene32885.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.29e-11 64.7
MS.gene32885.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.42e-11 64.3
MS.gene32885.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.75e-11 64.3
MS.gene32885.t1 MTR_7g110810 46.269 67 34 1 220 286 201 265 2.81e-11 64.3
MS.gene32885.t1 MTR_5g037250 50.000 64 31 1 224 286 113 176 3.34e-11 62.8
MS.gene32885.t1 MTR_4g070320 51.562 64 30 1 224 286 144 207 5.05e-11 63.2
MS.gene32885.t1 MTR_4g065870 39.091 110 65 2 175 283 308 416 5.19e-11 63.5
MS.gene32885.t1 MTR_2g098310 50.000 66 32 1 222 286 331 396 5.67e-11 63.2
MS.gene32885.t1 MTR_3g498825 53.125 64 29 1 224 286 148 211 8.01e-11 62.4
MS.gene32885.t1 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.04e-11 62.8
MS.gene32885.t1 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.51e-11 62.8
MS.gene32885.t1 MTR_5g048860 51.562 64 30 1 224 286 366 429 9.33e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32885.t1 AT2G14760 50.230 217 74 6 109 307 121 321 2.00e-56 186
MS.gene32885.t1 AT4G33880 59.119 159 62 1 150 305 190 348 8.72e-55 182
MS.gene32885.t1 AT1G27740 61.486 148 40 3 162 308 121 252 3.75e-53 175
MS.gene32885.t1 AT2G14760 47.391 230 74 7 109 307 121 334 9.33e-53 176
MS.gene32885.t1 AT5G43175 57.931 145 52 3 165 308 81 217 7.90e-46 155
MS.gene32885.t1 AT5G37800 61.039 77 29 1 216 291 193 269 1.29e-23 99.0
MS.gene32885.t1 AT1G66470 52.809 89 42 0 203 291 175 263 2.67e-23 97.8
MS.gene32885.t1 AT2G24260 51.613 93 43 1 207 297 17 109 1.16e-21 92.4
MS.gene32885.t1 AT4G30980 47.573 103 47 2 189 290 101 197 3.29e-21 92.4
MS.gene32885.t1 AT4G30980 47.573 103 47 2 189 290 149 245 4.17e-21 92.8
MS.gene32885.t1 AT2G24260 51.613 93 43 1 207 297 120 212 6.63e-21 92.0
MS.gene32885.t1 AT5G58010 48.352 91 43 2 222 308 98 188 8.98e-19 85.1
MS.gene32885.t1 AT3G21330 52.381 63 30 0 223 285 269 331 2.64e-15 76.3
MS.gene32885.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.02e-14 73.6
MS.gene32885.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.02e-14 73.6
MS.gene32885.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.02e-14 73.2
MS.gene32885.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.02e-14 73.2
MS.gene32885.t1 AT5G01305 49.180 61 31 0 222 282 36 96 1.38e-14 70.9
MS.gene32885.t1 AT4G00120 50.000 54 27 0 232 285 121 174 3.22e-14 70.5
MS.gene32885.t1 AT1G25330 50.617 81 39 1 224 303 105 185 4.77e-13 67.8
MS.gene32885.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.28e-13 69.7
MS.gene32885.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.28e-13 69.7
MS.gene32885.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.28e-13 69.7
MS.gene32885.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.28e-13 69.7
MS.gene32885.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.28e-13 69.7
MS.gene32885.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.28e-13 69.7
MS.gene32885.t1 AT1G51140 53.846 65 29 1 222 285 303 367 1.07e-12 68.6
MS.gene32885.t1 AT4G00050 39.423 104 51 3 183 286 77 168 1.22e-12 67.8
MS.gene32885.t1 AT1G18400 54.688 64 28 1 224 286 146 209 1.56e-12 66.6
MS.gene32885.t1 AT1G18400 54.688 64 28 1 224 286 146 209 2.07e-12 66.6
MS.gene32885.t1 AT5G67110 41.000 100 45 3 219 316 81 168 2.15e-12 65.9
MS.gene32885.t1 AT4G00050 39.423 104 51 3 183 286 179 270 2.64e-12 67.4
MS.gene32885.t1 AT4G00050 39.423 104 51 3 183 286 179 270 2.82e-12 67.4
MS.gene32885.t1 AT4G09180 48.529 68 34 1 222 288 183 250 4.45e-12 65.5
MS.gene32885.t1 AT1G35460 50.000 66 32 1 222 286 180 245 7.64e-12 65.1
MS.gene32885.t1 AT4G28790 45.946 74 39 1 227 300 275 347 1.22e-11 65.5
MS.gene32885.t1 AT1G73830 51.562 64 30 1 224 286 148 211 1.24e-11 64.3
MS.gene32885.t1 AT1G73830 51.562 64 30 1 224 286 148 211 1.27e-11 64.3
MS.gene32885.t1 AT4G28815 38.776 98 55 2 206 298 47 144 1.30e-11 63.9
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.36e-11 65.1
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.36e-11 65.1
MS.gene32885.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.36e-11 65.1
MS.gene32885.t1 AT2G46970 31.356 118 75 2 195 307 165 281 1.55e-11 65.1
MS.gene32885.t1 AT4G36930 36.047 86 54 1 230 315 198 282 1.57e-11 65.1
MS.gene32885.t1 AT2G46970 31.356 118 75 2 195 307 196 312 1.61e-11 65.1
MS.gene32885.t1 AT2G46970 31.356 118 75 2 195 307 174 290 1.67e-11 65.1
MS.gene32885.t1 AT4G28815 38.776 98 55 2 206 298 123 220 2.00e-11 64.3
MS.gene32885.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.49e-11 64.3
MS.gene32885.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.61e-11 63.9
MS.gene32885.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.62e-11 64.3
MS.gene32885.t1 AT3G07340 53.125 64 29 1 224 286 259 322 2.94e-11 64.3
MS.gene32885.t1 AT1G68920 32.237 152 101 2 136 286 216 366 3.19e-11 64.3
MS.gene32885.t1 AT3G07340 53.125 64 29 1 224 286 259 322 3.22e-11 64.3
MS.gene32885.t1 AT2G42280 52.308 65 30 1 222 285 278 342 3.68e-11 63.9
MS.gene32885.t1 AT1G26260 53.125 64 29 1 224 286 173 236 3.85e-11 63.5
MS.gene32885.t1 AT5G48560 53.125 64 29 1 224 286 302 365 4.00e-11 63.9
MS.gene32885.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene32885.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene32885.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene32885.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene32885.t1 AT5G48560 53.125 64 29 1 224 286 302 365 4.43e-11 63.9
MS.gene32885.t1 AT1G26260 53.125 64 29 1 224 286 202 265 4.53e-11 63.5
MS.gene32885.t1 AT1G59640 50.000 64 31 1 224 286 137 200 4.77e-11 62.8
MS.gene32885.t1 AT1G10120 51.562 64 30 1 224 286 207 270 4.80e-11 63.5
MS.gene32885.t1 AT1G10120 51.562 64 30 1 224 286 207 270 4.80e-11 63.5
MS.gene32885.t1 AT2G20180 37.079 89 51 1 196 284 256 339 6.31e-11 63.2
MS.gene32885.t1 AT4G34530 51.562 64 30 1 224 286 173 236 7.84e-11 62.8
MS.gene32885.t1 AT3G23690 50.000 64 31 1 224 286 192 255 9.03e-11 62.8
MS.gene32885.t1 AT1G68920 51.562 64 30 1 224 286 304 367 9.59e-11 62.8
MS.gene32885.t1 AT1G68920 51.562 64 30 1 224 286 304 367 9.59e-11 62.8
MS.gene32885.t1 AT1G68920 51.562 64 30 1 224 286 304 367 9.59e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3.1:-81488027 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.262665 3.1:+81487710 MS.gene32885:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3.1:-81488678 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3.1:-81488702 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3.1:-81487720 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3.1:-81488532 None:intergenic
TCAAGTCCATTATAAGCAAT+TGG 0.332783 3.1:-81488868 None:intergenic
TATGCCCCAATTGCTTATAA+TGG 0.346115 3.1:+81488862 MS.gene32885:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3.1:+81487447 MS.gene32885:CDS
CAAGTCCATTATAAGCAATT+GGG 0.382500 3.1:-81488867 None:intergenic
CTACAAAATCTTGTACCAAA+TGG 0.385534 3.1:+81488517 MS.gene32885:CDS
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3.1:-81488233 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3.1:+81488518 MS.gene32885:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3.1:+81487456 MS.gene32885:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3.1:+81488071 MS.gene32885:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3.1:+81487448 MS.gene32885:CDS
CATTCCCATTCACCATCATC+AGG 0.435647 3.1:-81487357 None:intergenic
ACATTGGATTCAATCTCAAC+AGG 0.435704 3.1:+81488890 MS.gene32885:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3.1:+81487494 MS.gene32885:CDS
TTCCTCTGAGGTATAACCAC+TGG 0.491898 3.1:-81488102 None:intergenic
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3.1:+81487435 MS.gene32885:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3.1:+81488874 MS.gene32885:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3.1:+81488690 MS.gene32885:CDS
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3.1:+81488231 MS.gene32885:CDS
TATCCCTGATGATGGTGAAT+GGG 0.541453 3.1:+81487353 MS.gene32885:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3.1:-81487501 None:intergenic
CTATCCCTGATGATGGTGAA+TGG 0.543984 3.1:+81487352 MS.gene32885:CDS
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3.1:+81487495 MS.gene32885:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3.1:+81487742 MS.gene32885:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3.1:+81488176 MS.gene32885:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3.1:-81488075 None:intergenic
CTTGGAGCTATCCCTGATGA+TGG 0.573282 3.1:+81487345 MS.gene32885:CDS
TGATAATTACCCTTGCATAG+AGG 0.574539 3.1:-81488241 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3.1:-81487500 None:intergenic
GAAAGTAATCATAGTACTCA+AGG 0.581294 3.1:+81487576 MS.gene32885:CDS
GAAGATAAGATAAACTCATG+TGG 0.590178 3.1:+81487741 MS.gene32885:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3.1:-81487407 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3.1:+81488232 MS.gene32885:CDS
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3.1:-81487487 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3.1:+81488525 MS.gene32885:CDS
GGTTGATAGAAATGAGAACA+AGG 0.615117 3.1:+81488043 MS.gene32885:CDS
AAGTCCATTATAAGCAATTG+GGG 0.617408 3.1:-81488866 None:intergenic
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3.1:-81487499 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3.1:+81488197 MS.gene32885:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3.1:+81488836 MS.gene32885:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3.1:-81487423 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3.1:+81488022 MS.gene32885:CDS
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3.1:-81487420 None:intergenic
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3.1:-81487383 None:intergenic
CTCTGAGGTATAACCACTGG+AGG 0.652022 3.1:-81488099 None:intergenic
ATTCCCATTCACCATCATCA+GGG 0.664402 3.1:-81487356 None:intergenic
CTCCAGTGGTTATACCTCAG+AGG 0.674227 3.1:+81488100 MS.gene32885:CDS
AGAGGAACAAAACATGTGTG+AGG 0.675741 3.1:+81488118 MS.gene32885:CDS
GTAGATGGACATACCTCCAG+TGG 0.708485 3.1:+81488086 MS.gene32885:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3.1:+81488131 MS.gene32885:CDS
AACATGTGTGAGGAAAACAG+TGG 0.790408 3.1:+81488128 MS.gene32885:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTATTACTAATTAAAG+TGG - chr3.1:81487952-81487971 None:intergenic 15.0%
!!! AATAATGATTTGAAATTTTG+TGG + chr3.1:81487963-81487982 MS.gene32885:intron 15.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3.1:81488751-81488770 MS.gene32885:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3.1:81488609-81488628 MS.gene32885:intron 20.0%
!! TAAGCTGACAAATTAATTAA+CGG - chr3.1:81487847-81487866 None:intergenic 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3.1:81488613-81488632 MS.gene32885:intron 20.0%
!!! ATGAATGTTTTGCATTTTAA+AGG + chr3.1:81488562-81488581 MS.gene32885:intron 20.0%
!!! TGAATGTTTTGCATTTTAAA+GGG + chr3.1:81488563-81488582 MS.gene32885:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3.1:81488468-81488487 MS.gene32885:intron 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3.1:81488467-81488486 MS.gene32885:intron 20.0%
! AAGAGGAATAGTTAAACAAA+AGG - chr3.1:81488290-81488309 None:intergenic 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3.1:81487742-81487761 MS.gene32885:CDS 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3.1:81488705-81488724 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3.1:81488518-81488537 MS.gene32885:CDS 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3.1:81487879-81487898 MS.gene32885:intron 25.0%
!!! AATGTTTTGCATTTTAAAGG+GGG + chr3.1:81488565-81488584 MS.gene32885:intron 25.0%
!!! ATTTTGTGGTTTTGAAATTC+AGG + chr3.1:81487977-81487996 MS.gene32885:intron 25.0%
!!! GAATGTTTTGCATTTTAAAG+GGG + chr3.1:81488564-81488583 MS.gene32885:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG + chr3.1:81487848-81487867 MS.gene32885:intron 25.0%
AAGTCCATTATAAGCAATTG+GGG - chr3.1:81488869-81488888 None:intergenic 30.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3.1:81488307-81488326 None:intergenic 30.0%
ACTAATTAAAGTGGTACTAG+TGG - chr3.1:81487943-81487962 None:intergenic 30.0%
CAAGTCCATTATAAGCAATT+GGG - chr3.1:81488870-81488889 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3.1:81488517-81488536 MS.gene32885:CDS 30.0%
CTGACAAATTAATTAACGGA+TGG - chr3.1:81487843-81487862 None:intergenic 30.0%
GAAAGTAATCATAGTACTCA+AGG + chr3.1:81487576-81487595 MS.gene32885:CDS 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3.1:81487741-81487760 MS.gene32885:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3.1:81488535-81488554 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3.1:81488871-81488890 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3.1:81488424-81488443 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3.1:81487448-81487467 MS.gene32885:CDS 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3.1:81488538-81488557 MS.gene32885:intron 30.0%
!! TTTTGATTGTTCTGATCATG+TGG + chr3.1:81487614-81487633 MS.gene32885:CDS 30.0%
!!! ATCTTTTTCAGCTTCAACTT+AGG - chr3.1:81487690-81487709 None:intergenic 30.0%
ACATTGGATTCAATCTCAAC+AGG + chr3.1:81488890-81488909 MS.gene32885:CDS 35.0%
AGTTCAAATTCCATGAGAGA+CGG + chr3.1:81487906-81487925 MS.gene32885:intron 35.0%
ATATATGGATGGTCATACAC+AGG + chr3.1:81488624-81488643 MS.gene32885:intron 35.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3.1:81487386-81487405 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3.1:81487447-81487466 MS.gene32885:CDS 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3.1:81487426-81487445 None:intergenic 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3.1:81488681-81488700 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3.1:81487423-81487442 None:intergenic 35.0%
TATGCCCCAATTGCTTATAA+TGG + chr3.1:81488862-81488881 MS.gene32885:CDS 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3.1:81488346-81488365 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3.1:81488244-81488263 None:intergenic 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3.1:81487456-81487475 MS.gene32885:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3.1:81487686-81487705 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3.1:81488195-81488214 None:intergenic 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3.1:81488874-81488893 MS.gene32885:CDS 35.0%
!! GGTTGATAGAAATGAGAACA+AGG + chr3.1:81488043-81488062 MS.gene32885:CDS 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3.1:81488346-81488365 MS.gene32885:intron 35.0%
AACATGTGTGAGGAAAACAG+TGG + chr3.1:81488128-81488147 MS.gene32885:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3.1:81488321-81488340 None:intergenic 40.0%
AGAGGAACAAAACATGTGTG+AGG + chr3.1:81488118-81488137 MS.gene32885:CDS 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3.1:81488030-81488049 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3.1:81488078-81488097 None:intergenic 40.0%
ATTCCCATTCACCATCATCA+GGG - chr3.1:81487359-81487378 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3.1:81488320-81488339 MS.gene32885:intron 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3.1:81488690-81488709 MS.gene32885:CDS 40.0%
CATATTACAACCGTCTCTCA+TGG - chr3.1:81487919-81487938 None:intergenic 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3.1:81488197-81488216 MS.gene32885:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG - chr3.1:81487723-81487742 None:intergenic 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3.1:81488525-81488544 MS.gene32885:CDS 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3.1:81488342-81488361 MS.gene32885:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3.1:81488338-81488357 MS.gene32885:intron 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3.1:81488836-81488855 MS.gene32885:CDS 40.0%
!! ACACATGTTTTGTTCCTCTG+AGG - chr3.1:81488117-81488136 None:intergenic 40.0%
!! TATCCCTGATGATGGTGAAT+GGG + chr3.1:81487353-81487372 MS.gene32885:CDS 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3.1:81487770-81487789 None:intergenic 40.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3.1:81488176-81488195 MS.gene32885:CDS 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3.1:81488022-81488041 MS.gene32885:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3.1:81488231-81488250 MS.gene32885:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3.1:81488131-81488150 MS.gene32885:CDS 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3.1:81487504-81487523 None:intergenic 45.0%
CATTCCCATTCACCATCATC+AGG - chr3.1:81487360-81487379 None:intergenic 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3.1:81488333-81488352 None:intergenic 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3.1:81488071-81488090 MS.gene32885:CDS 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3.1:81487710-81487729 MS.gene32885:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3.1:81488232-81488251 MS.gene32885:CDS 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3.1:81487503-81487522 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3.1:81487490-81487509 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3.1:81487410-81487429 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3.1:81487445-81487464 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3.1:81487783-81487802 None:intergenic 45.0%
!! CTATCCCTGATGATGGTGAA+TGG + chr3.1:81487352-81487371 MS.gene32885:CDS 45.0%
!! TTCCTCTGAGGTATAACCAC+TGG - chr3.1:81488105-81488124 None:intergenic 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3.1:81487771-81487790 None:intergenic 45.0%
AATCTCGCCATGCCATCAAG+GGG - chr3.1:81488381-81488400 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3.1:81488236-81488255 None:intergenic 50.0%
CTCCAGTGGTTATACCTCAG+AGG + chr3.1:81488100-81488119 MS.gene32885:CDS 50.0%
CTTGGAGCTATCCCTGATGA+TGG + chr3.1:81487345-81487364 MS.gene32885:CDS 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3.1:81488382-81488401 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3.1:81487435-81487454 MS.gene32885:CDS 50.0%
GTAGATGGACATACCTCCAG+TGG + chr3.1:81488086-81488105 MS.gene32885:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3.1:81487502-81487521 None:intergenic 50.0%
!! CTCTGAGGTATAACCACTGG+AGG - chr3.1:81488102-81488121 None:intergenic 50.0%
CGAATCTCGCCATGCCATCA+AGG - chr3.1:81488383-81488402 None:intergenic 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3.1:81488366-81488385 MS.gene32885:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3.1:81488371-81488390 MS.gene32885:intron 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3.1:81487495-81487514 MS.gene32885:CDS 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3.1:81487494-81487513 MS.gene32885:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 81487336 81488936 81487336 ID=MS.gene32885
chr3.1 mRNA 81487336 81488936 81487336 ID=MS.gene32885.t1;Parent=MS.gene32885
chr3.1 exon 81487336 81487797 81487336 ID=MS.gene32885.t1.exon1;Parent=MS.gene32885.t1
chr3.1 CDS 81487336 81487797 81487336 ID=cds.MS.gene32885.t1;Parent=MS.gene32885.t1
chr3.1 exon 81487999 81488253 81487999 ID=MS.gene32885.t1.exon2;Parent=MS.gene32885.t1
chr3.1 CDS 81487999 81488253 81487999 ID=cds.MS.gene32885.t1;Parent=MS.gene32885.t1
chr3.1 exon 81488481 81488546 81488481 ID=MS.gene32885.t1.exon3;Parent=MS.gene32885.t1
chr3.1 CDS 81488481 81488546 81488481 ID=cds.MS.gene32885.t1;Parent=MS.gene32885.t1
chr3.1 exon 81488646 81488711 81488646 ID=MS.gene32885.t1.exon4;Parent=MS.gene32885.t1
chr3.1 CDS 81488646 81488711 81488646 ID=cds.MS.gene32885.t1;Parent=MS.gene32885.t1
chr3.1 exon 81488835 81488936 81488835 ID=MS.gene32885.t1.exon5;Parent=MS.gene32885.t1
chr3.1 CDS 81488835 81488936 81488835 ID=cds.MS.gene32885.t1;Parent=MS.gene32885.t1
Gene Sequence

>MS.gene32885

ATGGAAACACTTGGAGCTATCCCTGATGATGGTGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACAAGAAAGTAATCATAGTACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAAGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTAAGCTTAATTTGTCTATATTTATATCATACGATATTTACTCCATCCGTTAATTAATTTGTCAGCTTAGCGGTTAGAGTCTTGACATTTTGTAATCTCAAAGGACAAAGTTCAAATTCCATGAGAGACGGTTGTAATATGACCACTAGTACCACTTTAATTAGTAATAATGATTTGAAATTTTGTGGTTTTGAAATTCAGGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAGAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCCAGTGGTTATACCTCAGAGGAACAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCTTCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGGTAATTATCAATTTCTTAAGTACAAATTAAATGCCTTTTGTTTAACTATTCCTCTTTTTAATCTCCATTCTGTGAACCATAGCATGTGGCCTTCTTTTCTTCTTTGGAAGGATGGTCACACTAGCCCCTTGATGGCATGGCGAGATTCGCGAAGCGAAGATCATTCGCCAAGTGAATGAAGTATATAGCAATTTATGTGATGCTTATTGTCTTTTTGAATTTTACAGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTAATTTATTTTGGCATGAATGTTTTGCATTTTAAAGGGGGTTGTAAGTTGCAATTATTTGAGAGATGTATAATTTGATATATGGATGGTCATACACAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGGTAATATATGAGTCGCGAAATATAGACGATTAATAATTAATTTCTGTTTAGAAATATCAAGGTGTGTGTATATGTTCAATCAGAATAACATCTTTTTAATATGAATGTTTATCTCTTATATAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCCCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACAGGAAGAAGATTTCTCCACCACCATGA
Protein sequence

>MS.gene32885.t1

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSQESNHSTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKKMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKKISPPP