AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32909

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32909.t1 MTR_3g102590 86.463 229 16 2 1 214 12 240 7.77e-121 342
MS.gene32909.t1 MTR_3g102590 93.785 177 10 1 1 176 12 188 4.40e-109 311
MS.gene32909.t1 MTR_3g102600 72.159 176 39 1 1 176 12 177 2.28e-81 241
MS.gene32909.t1 MTR_3g102600 72.159 176 39 1 1 176 12 177 1.21e-80 240
MS.gene32909.t1 MTR_1g013170 52.632 228 56 2 1 176 9 236 1.71e-70 223
MS.gene32909.t1 MTR_7g117705 49.561 228 63 3 1 176 9 236 2.15e-65 209
MS.gene32909.t1 MTR_3g102600 70.290 138 31 1 39 176 1 128 1.71e-63 194
MS.gene32909.t1 MTR_4g121020 48.673 226 66 2 1 176 35 260 3.11e-63 208
MS.gene32909.t1 MTR_4g121020 48.673 226 66 2 1 176 35 260 4.01e-63 207
MS.gene32909.t1 MTR_3g102600 70.290 138 31 1 39 176 1 128 4.80e-63 194
MS.gene32909.t1 MTR_1g013180 49.123 228 64 2 1 176 160 387 1.02e-62 206
MS.gene32909.t1 MTR_4g131600 47.982 223 69 1 1 176 24 246 3.95e-61 201
MS.gene32909.t1 MTR_2g034960 45.982 224 73 2 1 176 33 256 4.59e-61 201
MS.gene32909.t1 MTR_1g032570 45.887 231 70 2 1 176 15 245 1.03e-58 195
MS.gene32909.t1 MTR_4g131580 42.802 257 96 2 1 208 21 275 1.65e-57 191
MS.gene32909.t1 MTR_3g086100 43.860 228 76 1 1 176 17 244 2.55e-56 187
MS.gene32909.t1 MTR_3g106220 73.984 123 32 0 1 123 12 134 3.91e-55 186
MS.gene32909.t1 MTR_3g106220 65.909 88 17 2 122 197 189 275 1.51e-24 101
MS.gene32909.t1 MTR_4g131570 46.053 228 71 3 1 176 21 248 1.62e-54 183
MS.gene32909.t1 MTR_8g079940 44.248 226 76 2 1 176 29 254 1.10e-53 180
MS.gene32909.t1 MTR_2g450070 66.116 121 41 0 1 121 22 142 8.36e-46 161
MS.gene32909.t1 MTR_2g450070 68.000 50 16 0 127 176 209 258 3.63e-14 71.2
MS.gene32909.t1 MTR_2g450070 66.116 121 41 0 1 121 22 142 1.04e-45 160
MS.gene32909.t1 MTR_2g450070 68.000 50 16 0 127 176 209 258 4.15e-14 70.9
MS.gene32909.t1 MTR_4g021760 38.308 201 98 3 1 176 15 214 1.09e-42 146
MS.gene32909.t1 MTR_1g032570 43.750 176 44 2 56 176 1 176 2.75e-39 142
MS.gene32909.t1 MTR_4g021845 34.328 201 106 3 1 176 14 213 2.88e-37 129
MS.gene32909.t1 MTR_3g086100 41.618 173 49 1 56 176 1 173 4.44e-36 132
MS.gene32909.t1 MTR_4g021790 33.784 222 116 4 1 197 14 229 2.41e-35 126
MS.gene32909.t1 MTR_4g021855 32.883 222 118 4 1 197 14 229 1.59e-34 124
MS.gene32909.t1 MTR_0450s0040 31.884 207 110 1 1 176 8 214 7.40e-34 124
MS.gene32909.t1 MTR_7g026400 34.946 186 85 2 27 176 17 202 8.81e-32 121
MS.gene32909.t1 MTR_1g013160 42.568 148 33 2 59 154 1 148 1.23e-30 110
MS.gene32909.t1 MTR_6g045327 33.000 200 108 3 2 176 19 217 7.01e-30 114
MS.gene32909.t1 MTR_4g121020 39.735 151 41 2 76 176 6 156 9.95e-27 107
MS.gene32909.t1 MTR_8g105600 28.829 222 110 5 1 176 13 232 9.07e-23 95.9
MS.gene32909.t1 MTR_5g055260 33.571 140 80 3 1 140 14 140 2.88e-22 91.7
MS.gene32909.t1 MTR_4g023980 31.655 139 70 2 44 157 36 174 2.08e-21 87.4
MS.gene32909.t1 MTR_8g093040 35.766 137 85 2 1 134 18 154 3.32e-20 86.3
MS.gene32909.t1 MTR_3g092780 31.098 164 106 2 1 157 56 219 5.70e-20 87.8
MS.gene32909.t1 MTR_3g092780 32.317 164 103 3 1 157 56 218 1.30e-19 87.0
MS.gene32909.t1 MTR_6g016850 33.058 121 78 2 1 119 13 132 4.90e-19 80.9
MS.gene32909.t1 MTR_3g092780 31.548 168 106 3 1 160 56 222 5.69e-19 85.1
MS.gene32909.t1 MTR_8g024260 36.667 120 73 1 3 119 38 157 5.86e-19 85.1
MS.gene32909.t1 MTR_3g092780 31.737 167 106 3 1 160 56 221 1.51e-18 84.0
MS.gene32909.t1 MTR_3g037390 32.258 124 81 1 1 121 24 147 1.13e-17 81.3
MS.gene32909.t1 MTR_4g108880 31.452 124 82 1 1 121 33 156 1.58e-17 80.9
MS.gene32909.t1 MTR_4g061360 34.426 122 77 1 1 119 89 210 2.28e-17 80.5
MS.gene32909.t1 MTR_7g118260 31.056 161 102 2 1 155 14 171 2.40e-17 80.1
MS.gene32909.t1 MTR_1g067110 34.426 122 77 1 1 119 85 206 3.40e-17 80.1
MS.gene32909.t1 MTR_7g118260 34.043 141 83 3 1 134 14 151 3.53e-17 79.7
MS.gene32909.t1 MTR_1g067110 34.426 122 77 1 1 119 85 206 4.02e-17 79.7
MS.gene32909.t1 MTR_5g014040 37.190 121 70 3 1 119 18 134 7.85e-17 78.6
MS.gene32909.t1 MTR_5g014040 37.190 121 70 3 1 119 18 134 7.90e-17 78.6
MS.gene32909.t1 MTR_6g088950 33.333 96 64 0 27 122 34 129 5.58e-16 73.9
MS.gene32909.t1 MTR_4g098870 32.773 119 78 1 1 119 18 134 7.04e-15 73.2
MS.gene32909.t1 MTR_4g098870 32.773 119 78 1 1 119 38 154 7.33e-15 73.2
MS.gene32909.t1 MTR_4g098870 32.773 119 78 1 1 119 57 173 7.55e-15 73.2
MS.gene32909.t1 MTR_4g098870 32.773 119 78 1 1 119 38 154 8.89e-15 72.8
MS.gene32909.t1 MTR_4g098870 32.773 119 78 1 1 119 18 134 9.30e-15 72.8
MS.gene32909.t1 MTR_3g084390 48.529 68 25 2 1 58 12 79 1.40e-13 63.9
MS.gene32909.t1 MTR_8g032710 33.051 118 78 1 1 117 21 138 7.12e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32909.t1 AT4G31920 53.774 212 62 1 1 176 17 228 2.36e-71 226
MS.gene32909.t1 AT2G25180 51.020 245 60 3 1 185 17 261 4.72e-71 227
MS.gene32909.t1 AT5G58080 46.637 223 71 2 1 176 18 239 1.59e-55 186
MS.gene32909.t1 AT1G67710 44.541 229 74 3 1 176 11 239 6.47e-55 183
MS.gene32909.t1 AT2G01760 39.149 235 84 3 1 176 11 245 1.08e-46 158
MS.gene32909.t1 AT3G16857 52.482 141 55 1 1 141 37 165 3.60e-43 154
MS.gene32909.t1 AT3G16857 55.405 74 23 1 113 176 209 282 2.79e-17 80.1
MS.gene32909.t1 AT3G16857 52.482 141 55 1 1 141 37 165 3.98e-43 153
MS.gene32909.t1 AT3G16857 55.405 74 23 1 113 176 209 282 2.85e-17 80.1
MS.gene32909.t1 AT2G01760 37.946 224 80 3 12 176 50 273 7.22e-41 144
MS.gene32909.t1 AT1G67710 42.529 174 47 3 56 176 1 174 2.10e-34 127
MS.gene32909.t1 AT5G49240 30.837 227 106 1 1 176 42 268 1.43e-33 122
MS.gene32909.t1 AT3G16857 53.774 106 37 1 36 141 2 95 5.32e-33 125
MS.gene32909.t1 AT3G16857 55.405 74 23 1 113 176 139 212 2.98e-17 80.1
MS.gene32909.t1 AT3G62670 34.685 222 96 5 2 176 42 261 8.67e-33 122
MS.gene32909.t1 AT1G49190 30.131 229 105 5 3 176 36 264 2.51e-27 107
MS.gene32909.t1 AT1G49190 38.983 118 72 0 3 120 36 153 1.97e-25 103
MS.gene32909.t1 AT1G67710 38.312 154 42 3 76 176 12 165 1.05e-22 95.5
MS.gene32909.t1 AT2G46790 34.074 135 86 1 1 132 37 171 1.71e-20 89.0
MS.gene32909.t1 AT2G46790 34.074 135 86 1 1 132 37 171 2.34e-20 89.0
MS.gene32909.t1 AT5G61380 33.871 124 79 1 1 121 19 142 1.52e-19 86.7
MS.gene32909.t1 AT5G24470 34.959 123 77 1 1 120 50 172 2.24e-19 86.3
MS.gene32909.t1 AT2G01760 51.515 66 31 1 56 120 1 66 1.46e-17 79.7
MS.gene32909.t1 AT2G01760 65.957 47 16 0 130 176 134 180 5.02e-14 70.1
MS.gene32909.t1 AT5G02810 36.066 122 75 1 1 119 78 199 1.67e-17 80.9
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 1.29e-16 77.8
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 1.29e-16 77.8
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 1.29e-16 77.8
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 2.09e-16 77.4
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 2.65e-16 77.0
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 2.65e-16 77.0
MS.gene32909.t1 AT5G60100 34.426 122 77 1 1 119 64 185 2.65e-16 77.0
MS.gene32909.t1 AT5G07210 28.395 162 96 4 1 161 16 158 4.71e-14 70.9
MS.gene32909.t1 AT4G18020 34.783 115 70 3 7 119 30 141 1.09e-12 66.6
MS.gene32909.t1 AT4G18020 34.783 115 70 3 7 119 30 141 1.09e-12 66.6
MS.gene32909.t1 AT4G18020 34.783 115 70 3 7 119 30 141 1.09e-12 66.6
MS.gene32909.t1 AT4G18020 34.783 115 70 3 7 119 30 141 1.09e-12 66.6
MS.gene32909.t1 AT4G18020 34.783 115 70 3 7 119 30 141 1.09e-12 66.6
MS.gene32909.t1 AT4G18020 34.211 114 72 2 7 119 30 141 1.21e-12 66.6
MS.gene32909.t1 AT4G18020 34.211 114 72 2 7 119 30 141 1.21e-12 66.6
MS.gene32909.t1 AT4G18020 34.211 114 72 2 7 119 30 141 1.21e-12 66.6
MS.gene32909.t1 AT4G18020 34.211 114 72 2 7 119 30 141 1.21e-12 66.6
MS.gene32909.t1 AT4G18020 34.211 114 72 2 7 119 30 141 1.21e-12 66.6
MS.gene32909.t1 AT4G18020 34.211 114 72 2 7 119 30 141 1.21e-12 66.6
MS.gene32909.t1 AT5G07210 27.059 170 96 5 1 161 16 166 1.51e-11 63.5
MS.gene32909.t1 AT5G44190 56.250 48 21 0 129 176 145 192 6.92e-11 61.2
MS.gene32909.t1 AT5G44190 56.250 48 21 0 129 176 145 192 8.28e-11 60.8

Find 51 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGTGCCTCTGAGTTTC+TGG 0.051652 3.1:-81400565 MS.gene32909:CDS
GCTGTACCCGAAAAGATTCT+TGG 0.366985 3.1:-81400115 MS.gene32909:CDS
TAGAGGAGCTAAGGACCATT+TGG 0.401100 3.1:-81400527 MS.gene32909:CDS
AGCCTCAAGGAGTGCAGATC+AGG 0.403817 3.1:-81399876 MS.gene32909:CDS
CCATTTGGCAGCATGTAATT+CGG 0.418909 3.1:-81400512 MS.gene32909:CDS
AAACCAACACGCTAGTAGTT+TGG 0.419478 3.1:-81399903 MS.gene32909:CDS
AGAAGAAGTCCCAGTCTGTT+TGG 0.426238 3.1:-81400458 MS.gene32909:CDS
GGTGAAACCTGTGAGATTAG+AGG 0.438440 3.1:-81400544 MS.gene32909:CDS
GTTGCTGCTGTTAATCAGTT+AGG 0.449852 3.1:-81400411 MS.gene32909:CDS
CCGAATTACATGCTGCCAAA+TGG 0.460756 3.1:+81400512 None:intergenic
AGCTTAAGTCCATCCATGTC+AGG 0.462326 3.1:+81400812 None:intergenic
GGAACTTGAGATGGACCTTC+CGG 0.462916 3.1:-81400777 MS.gene32909:CDS
AAAGATGAGGTTAAAGAGAA+TGG 0.480718 3.1:-81399845 MS.gene32909:CDS
TGAACTTGTGGAACTTGAGA+TGG 0.496621 3.1:-81400786 MS.gene32909:CDS
CTTAGCTCCTCTAATCTCAC+AGG 0.511516 3.1:+81400537 None:intergenic
GTCCCAGTCTGTTTGGTCTG+TGG 0.513687 3.1:-81400451 MS.gene32909:CDS
ATGCGTGTTCTCGCCGTCGA+CGG 0.517593 3.1:-81401480 MS.gene32909:CDS
CGATAATGAGCTAGTGATGA+AGG 0.518138 3.1:-81400595 MS.gene32909:CDS
GCTCCACAGACCAAACAGAC+TGG 0.522152 3.1:+81400448 None:intergenic
TTCTAAATCCGAGAGATAAG+TGG 0.525410 3.1:+81401452 None:intergenic
GGGACTTCTTCTGAGCTGAT+AGG 0.528115 3.1:+81400469 None:intergenic
GGTGCACATCAGCGATTACC+AGG 0.528972 3.1:+81400837 None:intergenic
CGGCGATTCCACTTATCTCT+CGG 0.532887 3.1:-81401460 MS.gene32909:CDS
ACTTAAGCTGCTTGAACTTG+TGG 0.534364 3.1:-81400798 MS.gene32909:CDS
CTCCACAGACCAAACAGACT+GGG 0.537731 3.1:+81400449 None:intergenic
GTGCACCTGCCTGACATGGA+TGG 0.546404 3.1:-81400821 MS.gene32909:CDS
CTGTGAGATTAGAGGAGCTA+AGG 0.554732 3.1:-81400536 MS.gene32909:CDS
AAAGTTAGCTCTGTGGGCTG+TGG 0.555004 3.1:-81399927 MS.gene32909:intron
GTGAAGAAAGTTAGCTCTGT+GGG 0.556660 3.1:-81399933 MS.gene32909:intron
GCATGTAATTCGGAAGAAGA+AGG 0.566666 3.1:-81400502 MS.gene32909:CDS
TGATGTGCACCTGCCTGACA+TGG 0.573968 3.1:-81400825 MS.gene32909:CDS
TAAGTCCATCCATGTCAGGC+AGG 0.574028 3.1:+81400816 None:intergenic
GTAGTTTGGTGGCAGCCTCA+AGG 0.578073 3.1:-81399889 MS.gene32909:CDS
TGAATGTTGAAAATATTACA+AGG 0.578744 3.1:-81400087 MS.gene32909:CDS
CCAACACGCTAGTAGTTTGG+TGG 0.581455 3.1:-81399900 MS.gene32909:CDS
ATCCTGATCTGCACTCCTTG+AGG 0.584552 3.1:+81399874 None:intergenic
GACCGTGGTATTGACATGAT+CGG 0.585397 3.1:+81401421 None:intergenic
CCACCAAACTACTAGCGTGT+TGG 0.591206 3.1:+81399900 None:intergenic
ATAAGTGGAATCGCCGTCGA+CGG 0.593520 3.1:+81401467 None:intergenic
CCCACTTACTTACAACCGGA+AGG 0.631531 3.1:+81400762 None:intergenic
CCAGAAACTCAGAGGCACCA+TGG 0.637813 3.1:+81400565 None:intergenic
TCAGGATGAAGACAAAGATG+AGG 0.642568 3.1:-81399858 MS.gene32909:CDS
GAATGTTGAAAATATTACAA+GGG 0.643931 3.1:-81400086 MS.gene32909:CDS
TAACAGCAGCAACAAACTTG+TGG 0.645143 3.1:+81400421 None:intergenic
TCGGAAGAAGAAGGACAATG+AGG 0.649373 3.1:-81400493 MS.gene32909:CDS
TGTTGAAAATATTACAAGGG+AGG 0.651126 3.1:-81400083 MS.gene32909:CDS
GTGATGAAGGCAGTTTACCA+TGG 0.674402 3.1:-81400582 MS.gene32909:CDS
CTCCGATCATGTCAATACCA+CGG 0.699650 3.1:-81401423 MS.gene32909:intron
TGTGAAGAAAGTTAGCTCTG+TGG 0.699756 3.1:-81399934 MS.gene32909:intron
CGTGGTATTGACATGATCGG+AGG 0.711493 3.1:+81401424 None:intergenic
AGGTTTCACCAGAAACTCAG+AGG 0.716031 3.1:+81400557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTATAACAACAA+AGG + chr3.1:81400665-81400684 None:intergenic 10.0%
!! ATGAATAAATCAAATAAAAT+TGG + chr3.1:81399929-81399948 None:intergenic 10.0%
!! TGAATAAATCAAATAAAATT+GGG + chr3.1:81399928-81399947 None:intergenic 10.0%
!!! ATATTTATGTTATTTATGTA+TGG - chr3.1:81400366-81400385 MS.gene32909:intron 10.0%
!! GTAAAATGAGAAATAAAATT+CGG + chr3.1:81400991-81401010 None:intergenic 15.0%
!!! TATGTTATTTATACACATTT+TGG - chr3.1:81400240-81400259 MS.gene32909:intron 15.0%
!! GAATGTTGAAAATATTACAA+GGG - chr3.1:81401217-81401236 MS.gene32909:intron 20.0%
!! TGAAAAAAACTTATGATGAT+AGG - chr3.1:81401050-81401069 MS.gene32909:intron 20.0%
!! TGAATGTTGAAAATATTACA+AGG - chr3.1:81401216-81401235 MS.gene32909:intron 20.0%
!! TGATCATAATTGATAAGTAA+AGG - chr3.1:81399982-81400001 MS.gene32909:intron 20.0%
!! TTAGATAAATTAAAGCGTAA+AGG + chr3.1:81401279-81401298 None:intergenic 20.0%
!!! TAGATATGATTTTAGTTTGT+TGG - chr3.1:81400047-81400066 MS.gene32909:intron 20.0%
!!! TATGTTATTTATGTATGGTT+GGG - chr3.1:81400371-81400390 MS.gene32909:intron 20.0%
!!! TTATGTTATTTATGTATGGT+TGG - chr3.1:81400370-81400389 MS.gene32909:intron 20.0%
!!! TTTAATTTATTTTCAATCCG+AGG - chr3.1:81401026-81401045 MS.gene32909:intron 20.0%
! ATTGTTCCTATACTATAACA+AGG + chr3.1:81400319-81400338 None:intergenic 25.0%
! CACATTTATAAACACTATAC+AGG + chr3.1:81400147-81400166 None:intergenic 25.0%
! CATGCATTATACACATAAAT+TGG + chr3.1:81399961-81399980 None:intergenic 25.0%
! TATGTATATGTAGAGAGATA+CGG - chr3.1:81400006-81400025 MS.gene32909:intron 25.0%
! TCATGTTAATGTTGTATTAC+TGG - chr3.1:81401160-81401179 MS.gene32909:intron 25.0%
!! ATGTTATTTATGTATGGTTG+GGG - chr3.1:81400372-81400391 MS.gene32909:intron 25.0%
!!! AATGTTTCTGGTTTATGAAA+TGG - chr3.1:81401320-81401339 MS.gene32909:intron 25.0%
!!! TCATAAGTTTTTTTCAACCT+CGG + chr3.1:81401046-81401065 None:intergenic 25.0%
AAACAAAAACAAGTTTGACC+TGG - chr3.1:81400448-81400467 MS.gene32909:CDS 30.0%
AAAGATGAGGTTAAAGAGAA+TGG - chr3.1:81401458-81401477 MS.gene32909:CDS 30.0%
TAATGAAACACTTCATGACA+TGG + chr3.1:81401123-81401142 None:intergenic 30.0%
TGTTGAAAATATTACAAGGG+AGG - chr3.1:81401220-81401239 MS.gene32909:intron 30.0%
TTTCTTTCACTGAATGTTTC+TGG - chr3.1:81401308-81401327 MS.gene32909:intron 30.0%
! ATCAAACCAAGAATCTTTTC+GGG + chr3.1:81401197-81401216 None:intergenic 30.0%
! CAAACTCCTTGTTATAGTAT+AGG - chr3.1:81400310-81400329 MS.gene32909:intron 30.0%
! CATCAAACCAAGAATCTTTT+CGG + chr3.1:81401198-81401217 None:intergenic 30.0%
! TGTTGATAAAAAGTTTGACC+TGG - chr3.1:81400202-81400221 MS.gene32909:intron 30.0%
AACAAGGAGTTTGTGAAACT+AGG + chr3.1:81400303-81400322 None:intergenic 35.0%
TAAAGGACTAGAAAATTGCC+CGG + chr3.1:81401262-81401281 None:intergenic 35.0%
TAATGTTGTATTACTGGCAG+AGG - chr3.1:81401166-81401185 MS.gene32909:intron 35.0%
TTCTAAATCCGAGAGATAAG+TGG + chr3.1:81399854-81399873 None:intergenic 35.0%
! GTTTGTTGGAAATTCTGCTT+CGG - chr3.1:81400061-81400080 MS.gene32909:intron 35.0%
! TTATGATGATAGGTGCTACA+TGG - chr3.1:81401060-81401079 MS.gene32909:intron 35.0%
AAAAGAAAAGAAGCAGACCG+TGG + chr3.1:81399900-81399919 None:intergenic 40.0%
AAACCAACACGCTAGTAGTT+TGG - chr3.1:81401400-81401419 MS.gene32909:intron 40.0%
AAATATTACAAGGGAGGACG+TGG - chr3.1:81401226-81401245 MS.gene32909:intron 40.0%
AATTAACCACCTCAAAGCCA+AGG + chr3.1:81400101-81400120 None:intergenic 40.0%
ACTTAAGCTGCTTGAACTTG+TGG - chr3.1:81400505-81400524 MS.gene32909:CDS 40.0%
AGACTCGTAATCCTAAGTCA+TGG - chr3.1:81400268-81400287 MS.gene32909:intron 40.0%
ATAAAATTCGGTCAAGCTCG+AGG + chr3.1:81400979-81400998 None:intergenic 40.0%
ATACCATAACAGCGATTACC+AGG + chr3.1:81400223-81400242 None:intergenic 40.0%
CAGGTCATATCTAAGCAATG+TGG + chr3.1:81400128-81400147 None:intergenic 40.0%
CCATTTGGCAGCATGTAATT+CGG - chr3.1:81400791-81400810 MS.gene32909:CDS 40.0%
CGATAATGAGCTAGTGATGA+AGG - chr3.1:81400708-81400727 MS.gene32909:intron 40.0%
GCATGTAATTCGGAAGAAGA+AGG - chr3.1:81400801-81400820 MS.gene32909:CDS 40.0%
GGTCAAACATACCATGACTT+AGG + chr3.1:81400282-81400301 None:intergenic 40.0%
GTTGCTGCTGTTAATCAGTT+AGG - chr3.1:81400892-81400911 MS.gene32909:CDS 40.0%
TAACAGCAGCAACAAACTTG+TGG + chr3.1:81400885-81400904 None:intergenic 40.0%
TCAAGCTCGAGGAAATTGAT+AGG + chr3.1:81400968-81400987 None:intergenic 40.0%
TCAGGATGAAGACAAAGATG+AGG - chr3.1:81401445-81401464 MS.gene32909:CDS 40.0%
TGAACTTGTGGAACTTGAGA+TGG - chr3.1:81400517-81400536 MS.gene32909:CDS 40.0%
!! GTGAAGAAAGTTAGCTCTGT+GGG - chr3.1:81401370-81401389 MS.gene32909:intron 40.0%
!! TGTGAAGAAAGTTAGCTCTG+TGG - chr3.1:81401369-81401388 MS.gene32909:intron 40.0%
!!! TGTTTGTTTTGCTGACAGAG+TGG + chr3.1:81400935-81400954 None:intergenic 40.0%
ACCTTCCGGTTGTAAGTAAG+TGG - chr3.1:81400540-81400559 MS.gene32909:CDS 45.0%
ACTAGAAAATTGCCCGGAGA+TGG + chr3.1:81401256-81401275 None:intergenic 45.0%
AGAAGAAGTCCCAGTCTGTT+TGG - chr3.1:81400845-81400864 MS.gene32909:CDS 45.0%
AGCTTAAGTCCATCCATGTC+AGG + chr3.1:81400494-81400513 None:intergenic 45.0%
AGGTTTCACCAGAAACTCAG+AGG + chr3.1:81400749-81400768 None:intergenic 45.0%
CCGAATTACATGCTGCCAAA+TGG + chr3.1:81400794-81400813 None:intergenic 45.0%
CCTTCCGGTTGTAAGTAAGT+GGG - chr3.1:81400541-81400560 MS.gene32909:CDS 45.0%
CTCCGATCATGTCAATACCA+CGG - chr3.1:81399880-81399899 MS.gene32909:CDS 45.0%
CTGTGAGATTAGAGGAGCTA+AGG - chr3.1:81400767-81400786 MS.gene32909:intron 45.0%
CTTAGCTCCTCTAATCTCAC+AGG + chr3.1:81400769-81400788 None:intergenic 45.0%
CTTCCGGTTGTAAGTAAGTG+GGG - chr3.1:81400542-81400561 MS.gene32909:CDS 45.0%
GCTGTACCCGAAAAGATTCT+TGG - chr3.1:81401188-81401207 MS.gene32909:intron 45.0%
GGTGAAACCTGTGAGATTAG+AGG - chr3.1:81400759-81400778 MS.gene32909:intron 45.0%
GTGATGAAGGCAGTTTACCA+TGG - chr3.1:81400721-81400740 MS.gene32909:intron 45.0%
TAGAGGAGCTAAGGACCATT+TGG - chr3.1:81400776-81400795 MS.gene32909:CDS 45.0%
TCGGAAGAAGAAGGACAATG+AGG - chr3.1:81400810-81400829 MS.gene32909:CDS 45.0%
TGACCTGGTAATCGCTGTTA+TGG - chr3.1:81400217-81400236 MS.gene32909:intron 45.0%
TTCCGGTTGTAAGTAAGTGG+GGG - chr3.1:81400543-81400562 MS.gene32909:CDS 45.0%
TTGGAAATTCTGCTTCGGTC+CGG - chr3.1:81400066-81400085 MS.gene32909:intron 45.0%
!! GACCGTGGTATTGACATGAT+CGG + chr3.1:81399885-81399904 None:intergenic 45.0%
AAAGCCAAGGCAGCAAATGC+CGG + chr3.1:81400088-81400107 None:intergenic 50.0%
ATAAGTGGAATCGCCGTCGA+CGG + chr3.1:81399839-81399858 None:intergenic 50.0%
ATCCTGATCTGCACTCCTTG+AGG + chr3.1:81401432-81401451 None:intergenic 50.0%
CCAACACGCTAGTAGTTTGG+TGG - chr3.1:81401403-81401422 MS.gene32909:intron 50.0%
CCACCAAACTACTAGCGTGT+TGG + chr3.1:81401406-81401425 None:intergenic 50.0%
CCCACTTACTTACAACCGGA+AGG + chr3.1:81400544-81400563 None:intergenic 50.0%
CGGCGATTCCACTTATCTCT+CGG - chr3.1:81399843-81399862 MS.gene32909:CDS 50.0%
CTCCACAGACCAAACAGACT+GGG + chr3.1:81400857-81400876 None:intergenic 50.0%
GGAACTTGAGATGGACCTTC+CGG - chr3.1:81400526-81400545 MS.gene32909:CDS 50.0%
GGGACTTCTTCTGAGCTGAT+AGG + chr3.1:81400837-81400856 None:intergenic 50.0%
TAAGTCCATCCATGTCAGGC+AGG + chr3.1:81400490-81400509 None:intergenic 50.0%
TCCCCCCACTTACTTACAAC+CGG + chr3.1:81400548-81400567 None:intergenic 50.0%
TCCGGTTGTAAGTAAGTGGG+GGG - chr3.1:81400544-81400563 MS.gene32909:CDS 50.0%
!! AAAGTTAGCTCTGTGGGCTG+TGG - chr3.1:81401376-81401395 MS.gene32909:intron 50.0%
!! CATTTGCTGCCTTGGCTTTG+AGG - chr3.1:81400089-81400108 MS.gene32909:CDS 50.0%
!! CGTGGTATTGACATGATCGG+AGG + chr3.1:81399882-81399901 None:intergenic 50.0%
CCATGGTGCCTCTGAGTTTC+TGG - chr3.1:81400738-81400757 MS.gene32909:intron 55.0%
GCTCCACAGACCAAACAGAC+TGG + chr3.1:81400858-81400877 None:intergenic 55.0%
GGTGCACATCAGCGATTACC+AGG + chr3.1:81400469-81400488 None:intergenic 55.0%
GTCCCAGTCTGTTTGGTCTG+TGG - chr3.1:81400852-81400871 MS.gene32909:CDS 55.0%
TGATGTGCACCTGCCTGACA+TGG - chr3.1:81400478-81400497 MS.gene32909:CDS 55.0%
! AGCCTCAAGGAGTGCAGATC+AGG - chr3.1:81401427-81401446 MS.gene32909:CDS 55.0%
! GTAGTTTGGTGGCAGCCTCA+AGG - chr3.1:81401414-81401433 MS.gene32909:intron 55.0%
!! CCAGAAACTCAGAGGCACCA+TGG + chr3.1:81400741-81400760 None:intergenic 55.0%
!! TTGCTGCCTTGGCTTTGAGG+TGG - chr3.1:81400092-81400111 MS.gene32909:CDS 55.0%
AGGACGTGGCAAGCCATCTC+CGG - chr3.1:81401240-81401259 MS.gene32909:intron 60.0%
ATGCGTGTTCTCGCCGTCGA+CGG - chr3.1:81399823-81399842 MS.gene32909:CDS 60.0%
GTGCACCTGCCTGACATGGA+TGG - chr3.1:81400482-81400501 MS.gene32909:CDS 60.0%
GGACGTGGCAAGCCATCTCC+GGG - chr3.1:81401241-81401260 MS.gene32909:intron 65.0%
! CGGTCCGGCATTTGCTGCCT+TGG - chr3.1:81400081-81400100 MS.gene32909:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 81399823 81401502 81399823 ID=MS.gene32909
chr3.1 mRNA 81399823 81401502 81399823 ID=MS.gene32909.t1;Parent=MS.gene32909
chr3.1 exon 81401424 81401502 81401424 ID=MS.gene32909.t1.exon1;Parent=MS.gene32909.t1
chr3.1 CDS 81401424 81401502 81401424 ID=cds.MS.gene32909.t1;Parent=MS.gene32909.t1
chr3.1 exon 81400771 81400923 81400771 ID=MS.gene32909.t1.exon2;Parent=MS.gene32909.t1
chr3.1 CDS 81400771 81400923 81400771 ID=cds.MS.gene32909.t1;Parent=MS.gene32909.t1
chr3.1 exon 81400403 81400633 81400403 ID=MS.gene32909.t1.exon3;Parent=MS.gene32909.t1
chr3.1 CDS 81400403 81400633 81400403 ID=cds.MS.gene32909.t1;Parent=MS.gene32909.t1
chr3.1 exon 81400081 81400139 81400081 ID=MS.gene32909.t1.exon4;Parent=MS.gene32909.t1
chr3.1 CDS 81400081 81400139 81400081 ID=cds.MS.gene32909.t1;Parent=MS.gene32909.t1
chr3.1 exon 81399823 81399945 81399823 ID=MS.gene32909.t1.exon5;Parent=MS.gene32909.t1
chr3.1 CDS 81399823 81399945 81399823 ID=cds.MS.gene32909.t1;Parent=MS.gene32909.t1
Gene Sequence

>MS.gene32909

ATGCGTGTTCTCGCCGTCGACGGCGATTCCACTTATCTCTCGGATTTAGAAACTCGCCTCCGATCATGTCAATACCACGGTCTGCTTCTTTTCTTTTTTATGCCCAATTTTATTTGATTTATTCATACATTATGTCCAATTTATGTGTATAATGCATGATGATCATAATTGATAAGTAAAGGATATGTATATGTAGAGAGATACGGTTAATTCTTTTATTGATGTAGATATGATTTTAGTTTGTTGGAAATTCTGCTTCGGTCCGGCATTTGCTGCCTTGGCTTTGAGGTGGTTAATTTAGTCCACATTGCTTAGATATGACCTGTATAGTGTTTATAAATGTGTAATTGCAATTATAGAAATTCAAGCAAAGATGTTGTGTTGATAAAAAGTTTGACCTGGTAATCGCTGTTATGGTATGTTATTTATACACATTTTGGATCAAAGACTCGTAATCCTAAGTCATGGTATGTTTGACCTAGTTTCACAAACTCCTTGTTATAGTATAGGAACAATATATACACATTTTGCTTGTTCTGAACGATATTTATGTTATTTATGTATGGTTGGGGATTGCAGTAACAACAGCTAGTGAAGCAAAAACAGCATTGACTATGTTGCGAGAAAACAAAAACAAGTTTGACCTGGTAATCGCTGATGTGCACCTGCCTGACATGGATGGACTTAAGCTGCTTGAACTTGTGGAACTTGAGATGGACCTTCCGGTTGTAAGTAAGTGGGGGGATCTGTTCTGTAATCTTCAGTTCTTCATCTTTGTCTTGTTTCTTAATTTTCACTCTCTTTTATTTATAATTATTAATCAATGATTGTTTCGTGAACCTTTGTTGTTATAATTTTTTTTATTTCAGTGTTGTCTGAATCTAGCGATAATGAGCTAGTGATGAAGGCAGTTTACCATGGTGCCTCTGAGTTTCTGGTGAAACCTGTGAGATTAGAGGAGCTAAGGACCATTTGGCAGCATGTAATTCGGAAGAAGAAGGACAATGAGGACCTATCAGCTCAGAAGAAGTCCCAGTCTGTTTGGTCTGTGGAGCTGCACCACAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAGTACGTTCTCCACTCTGTCAGCAAAACAAACAATTTTTATTTCCTATCAATTTCCTCGAGCTTGACCGAATTTTATTTCTCATTTTACATTATCAAAGTGTTTTTTAATTTATTTTCAATCCGAGGTTGAAAAAAACTTATGATGATAGGTGCTACATGGTATAAATTTCATTTCTCAATCATCACTCAAATTTATGCCATGTCATGAAGTGTTTCATTACTGAATTTGAGTGAGTCTCATGTTAATGTTGTATTACTGGCAGAGGCTGTACCCGAAAAGATTCTTGGTTTGATGAATGTTGAAAATATTACAAGGGAGGACGTGGCAAGCCATCTCCGGGCAATTTTCTAGTCCTTTACGCTTTAATTTATCTAAGTTCAATCATTTCTTTCACTGAATGTTTCTGGTTTATGAAATGGCTGCAGAAGTATAGACTTATTGACTATGTGAAGAAAGTTAGCTCTGTGGGCTGTGGCAAACCAACACGCTAGTAGTTTGGTGGCAGCCTCAAGGAGTGCAGATCAGGATGAAGACAAAGATGAGGTTAAAGAGAATGGTCATGAGAATGAGAACCCATGA
Protein sequence

>MS.gene32909.t1

MRVLAVDGDSTYLSDLETRLRSCQYHVTTASEAKTALTMLRENKNKFDLVIADVHLPDMDGLKLLELVELEMDLPVVMLSESSDNELVMKAVYHGASEFLVKPVRLEELRTIWQHVIRKKKDNEDLSAQKKSQSVWSVELHHKFVAAVNQLGIDKAVPEKILGLMNVENITREDLALWAVANQHASSLVAASRSADQDEDKDEVKENGHENENP