Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32956.t1 | KEH26464.1 | 69.9 | 236 | 67 | 1 | 1 | 232 | 2 | 237 | 2.10E-85 | 325.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32956.t1 | Q9ZSH7 | 27.9 | 136 | 89 | 3 | 17 | 149 | 30 | 159 | 1.5e-07 | 58.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32956.t1 | A0A072U9K2 | 69.9 | 236 | 67 | 1 | 1 | 232 | 2 | 237 | 1.5e-85 | 325.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32956.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32956.t1 | MTR_6g061070 | 70.763 | 236 | 65 | 1 | 1 | 232 | 2 | 237 | 4.49e-116 | 340 |
| MS.gene32956.t1 | MTR_1g035480 | 68.254 | 189 | 34 | 2 | 1 | 183 | 1 | 169 | 1.98e-87 | 257 |
| MS.gene32956.t1 | MTR_1g033740 | 67.380 | 187 | 39 | 2 | 2 | 183 | 7 | 176 | 9.56e-87 | 255 |
| MS.gene32956.t1 | MTR_1g035500 | 62.366 | 186 | 47 | 2 | 4 | 183 | 12 | 180 | 1.21e-80 | 239 |
| MS.gene32956.t1 | MTR_1g035520 | 74.375 | 160 | 34 | 2 | 32 | 184 | 87 | 246 | 1.46e-75 | 233 |
| MS.gene32956.t1 | MTR_1g035470 | 62.581 | 155 | 31 | 3 | 32 | 181 | 1 | 133 | 7.80e-59 | 182 |
| MS.gene32956.t1 | MTR_1g035510 | 58.974 | 156 | 43 | 2 | 32 | 183 | 1 | 139 | 1.78e-58 | 184 |
| MS.gene32956.t1 | MTR_1g035650 | 38.813 | 219 | 104 | 6 | 17 | 232 | 9 | 200 | 5.13e-39 | 134 |
| MS.gene32956.t1 | MTR_1g035620 | 38.813 | 219 | 98 | 7 | 17 | 233 | 9 | 193 | 1.54e-34 | 127 |
| MS.gene32956.t1 | MTR_1g035640 | 35.885 | 209 | 109 | 5 | 26 | 233 | 14 | 198 | 4.36e-32 | 122 |
| MS.gene32956.t1 | MTR_1g050845 | 34.545 | 220 | 96 | 7 | 17 | 234 | 9 | 182 | 1.10e-24 | 102 |
| MS.gene32956.t1 | MTR_1g035570 | 35.714 | 154 | 76 | 4 | 26 | 157 | 14 | 166 | 8.82e-24 | 98.6 |
| MS.gene32956.t1 | MTR_4g119990 | 38.312 | 154 | 85 | 5 | 12 | 155 | 10 | 163 | 2.59e-23 | 97.1 |
| MS.gene32956.t1 | MTR_7g050720 | 32.068 | 237 | 133 | 9 | 9 | 232 | 2 | 223 | 9.65e-22 | 92.0 |
| MS.gene32956.t1 | MTR_3g098790 | 38.281 | 128 | 72 | 3 | 12 | 132 | 8 | 135 | 2.72e-21 | 90.9 |
| MS.gene32956.t1 | MTR_5g044670 | 33.333 | 165 | 90 | 5 | 2 | 150 | 5 | 165 | 4.00e-21 | 90.5 |
| MS.gene32956.t1 | MTR_3g061290 | 34.507 | 142 | 88 | 3 | 15 | 153 | 10 | 149 | 3.38e-20 | 85.5 |
| MS.gene32956.t1 | MTR_7g050560 | 40.909 | 110 | 62 | 2 | 11 | 117 | 7 | 116 | 3.86e-20 | 87.4 |
| MS.gene32956.t1 | MTR_7g050580 | 33.987 | 153 | 91 | 5 | 11 | 160 | 7 | 152 | 8.49e-20 | 86.7 |
| MS.gene32956.t1 | MTR_6g043890 | 42.718 | 103 | 55 | 3 | 14 | 112 | 12 | 114 | 2.10e-19 | 85.9 |
| MS.gene32956.t1 | MTR_1g035440 | 43.689 | 103 | 54 | 2 | 14 | 112 | 12 | 114 | 2.62e-19 | 84.0 |
| MS.gene32956.t1 | MTR_3g061350 | 35.606 | 132 | 79 | 4 | 17 | 144 | 12 | 141 | 2.00e-18 | 82.4 |
| MS.gene32956.t1 | MTR_3g061310 | 31.387 | 137 | 89 | 3 | 15 | 148 | 10 | 144 | 1.16e-17 | 80.1 |
| MS.gene32956.t1 | MTR_7g050710 | 36.522 | 115 | 70 | 2 | 10 | 121 | 6 | 120 | 1.87e-17 | 80.1 |
| MS.gene32956.t1 | MTR_3g061320 | 36.842 | 133 | 77 | 5 | 7 | 135 | 2 | 131 | 1.93e-17 | 79.3 |
| MS.gene32956.t1 | MTR_3g061330 | 30.357 | 168 | 103 | 4 | 7 | 162 | 2 | 167 | 2.17e-17 | 79.0 |
| MS.gene32956.t1 | MTR_3g061370 | 31.138 | 167 | 98 | 6 | 10 | 162 | 2 | 165 | 5.31e-17 | 78.2 |
| MS.gene32956.t1 | MTR_8g103940 | 29.870 | 154 | 100 | 5 | 15 | 160 | 37 | 190 | 5.46e-16 | 77.0 |
| MS.gene32956.t1 | MTR_7g050640 | 37.000 | 100 | 60 | 2 | 11 | 107 | 7 | 106 | 1.34e-15 | 70.9 |
| MS.gene32956.t1 | MTR_3g061220 | 36.207 | 116 | 61 | 4 | 15 | 129 | 10 | 113 | 1.89e-15 | 70.5 |
| MS.gene32956.t1 | MTR_7g050590 | 41.573 | 89 | 49 | 2 | 32 | 117 | 1 | 89 | 2.54e-15 | 73.9 |
| MS.gene32956.t1 | MTR_3g005495 | 38.000 | 100 | 59 | 2 | 16 | 112 | 242 | 341 | 2.94e-15 | 74.7 |
| MS.gene32956.t1 | MTR_3g005460 | 32.759 | 116 | 74 | 2 | 1 | 112 | 246 | 361 | 3.39e-15 | 74.7 |
| MS.gene32956.t1 | MTR_3g005480 | 33.962 | 106 | 67 | 2 | 10 | 112 | 14 | 119 | 2.03e-14 | 70.9 |
| MS.gene32956.t1 | MTR_3g005490 | 32.710 | 107 | 69 | 2 | 9 | 112 | 13 | 119 | 1.06e-13 | 68.9 |
| MS.gene32956.t1 | MTR_1g035460 | 37.037 | 108 | 64 | 3 | 32 | 135 | 1 | 108 | 1.29e-13 | 69.7 |
| MS.gene32956.t1 | MTR_5g070440 | 32.381 | 105 | 68 | 2 | 11 | 112 | 15 | 119 | 1.96e-13 | 68.2 |
| MS.gene32956.t1 | MTR_3g005420 | 35.000 | 100 | 62 | 2 | 16 | 112 | 288 | 387 | 4.01e-13 | 68.6 |
| MS.gene32956.t1 | MTR_3g005420 | 33.028 | 109 | 69 | 3 | 9 | 113 | 32 | 140 | 5.35e-11 | 62.4 |
| MS.gene32956.t1 | MTR_3g061340 | 32.414 | 145 | 85 | 6 | 7 | 146 | 2 | 138 | 8.32e-13 | 66.6 |
| MS.gene32956.t1 | MTR_3g005440 | 34.000 | 100 | 63 | 2 | 16 | 112 | 241 | 340 | 1.46e-11 | 63.9 |
| MS.gene32956.t1 | MTR_3g005420 | 33.028 | 109 | 69 | 3 | 9 | 113 | 13 | 121 | 4.84e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32956.t1 | AT3G18990 | 25.301 | 249 | 150 | 9 | 17 | 230 | 6 | 253 | 5.11e-12 | 64.7 |
| MS.gene32956.t1 | AT3G18990 | 25.301 | 249 | 150 | 9 | 17 | 230 | 6 | 253 | 7.00e-12 | 64.7 |
Find 42 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAACTTTGTGAATTGC+AGG | 0.285867 | 1.4:+20027169 | MS.gene32956:CDS |
| TATATTGGATGATAGTAGTT+TGG | 0.295324 | 1.4:+20028246 | MS.gene32956:CDS |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1.4:+20028110 | MS.gene32956:CDS |
| ATTCACAAAGTTGAATGGTT+TGG | 0.365673 | 1.4:-20027163 | None:intergenic |
| TACAACGCGGTGACGATGTT+TGG | 0.370214 | 1.4:+20028134 | MS.gene32956:CDS |
| TTATAACCTTCAATGTGATA+TGG | 0.376198 | 1.4:-20028869 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1.4:-20028213 | None:intergenic |
| CTGCAATTCACAAAGTTGAA+TGG | 0.392583 | 1.4:-20027168 | None:intergenic |
| ACGATGTTTGGCTTCAGAAC+TGG | 0.404512 | 1.4:+20028146 | MS.gene32956:CDS |
| CATTGAAGGTTATAATAGAT+TGG | 0.414338 | 1.4:+20028877 | MS.gene32956:CDS |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1.4:+20028111 | MS.gene32956:CDS |
| TTATCGCCATATCACATTGA+AGG | 0.463256 | 1.4:+20028863 | MS.gene32956:CDS |
| CTAATAGAAACTGTGGAGGC+CGG | 0.465574 | 1.4:+20028744 | MS.gene32956:CDS |
| TGTCTCTCTACGAATTTCCT+TGG | 0.471061 | 1.4:-20028043 | None:intergenic |
| TAATAGAAACTGTGGAGGCC+GGG | 0.483673 | 1.4:+20028745 | MS.gene32956:CDS |
| TCAATGTCAAGTGTTCACTA+TGG | 0.491973 | 1.4:+20027107 | None:intergenic |
| TCACAAATTATCATCCCAAT+GGG | 0.508213 | 1.4:+20028819 | MS.gene32956:CDS |
| TTGCCAATGTTTGTCCCTTG+AGG | 0.510253 | 1.4:-20028430 | None:intergenic |
| TTCACAAATTATCATCCCAA+TGG | 0.514529 | 1.4:+20028818 | MS.gene32956:CDS |
| ACATCGCTTAGACTTCCAAA+TGG | 0.515725 | 1.4:+20028088 | MS.gene32956:CDS |
| TGGACGTGGGAGTGAAGCTA+AGG | 0.519368 | 1.4:+20027127 | MS.gene32956:CDS |
| GGAAATTCGTAGAGAGACAT+TGG | 0.530097 | 1.4:+20028047 | MS.gene32956:CDS |
| TTTGGAAGTCTAAGCGATGT+TGG | 0.531226 | 1.4:-20028085 | None:intergenic |
| TTTGGCTTCAGAACTGGAAG+AGG | 0.532764 | 1.4:+20028152 | MS.gene32956:CDS |
| CAATGATGAACAAGAAGCTA+AGG | 0.539148 | 1.4:+20028294 | MS.gene32956:CDS |
| ATTTCTTAGCTTTCTTACCC+CGG | 0.551754 | 1.4:-20028763 | None:intergenic |
| AATAGAAACTGTGGAGGCCG+GGG | 0.552110 | 1.4:+20028746 | MS.gene32956:CDS |
| ACTAGTGCTGCTACACCTCA+AGG | 0.555707 | 1.4:+20028415 | MS.gene32956:CDS |
| CATCGCTTAGACTTCCAAAT+GGG | 0.555762 | 1.4:+20028089 | MS.gene32956:CDS |
| TGTTCTTGCAGATGATTCCA+AGG | 0.559130 | 1.4:+20028026 | MS.gene32956:intron |
| GATAATTTGACAGTGAAACT+AGG | 0.566923 | 1.4:-20028845 | None:intergenic |
| TCAAGTGTTCACTATGGACG+TGG | 0.567496 | 1.4:+20027113 | MS.gene32956:CDS |
| GTGAAACTAGGACTCCCATT+GGG | 0.573485 | 1.4:-20028833 | None:intergenic |
| ACACCTCAAGGGACAAACAT+TGG | 0.575666 | 1.4:+20028427 | MS.gene32956:CDS |
| TTTGCGCGCTCTCTCAGATG+TGG | 0.586381 | 1.4:+20028175 | MS.gene32956:CDS |
| AGTGAAACTAGGACTCCCAT+TGG | 0.586614 | 1.4:-20028834 | None:intergenic |
| GGACGTGGGAGTGAAGCTAA+GGG | 0.640577 | 1.4:+20027128 | MS.gene32956:CDS |
| GCAGAGGCTAATAGAAACTG+TGG | 0.644824 | 1.4:+20028737 | MS.gene32956:intron |
| CTAGTGCTGCTACACCTCAA+GGG | 0.659036 | 1.4:+20028416 | MS.gene32956:CDS |
| GAGGCTAATAGAAACTGTGG+AGG | 0.696340 | 1.4:+20028740 | MS.gene32956:intron |
| CAAGTGTTCACTATGGACGT+GGG | 0.700697 | 1.4:+20027114 | MS.gene32956:CDS |
| AAAATGAATTGGGTACAACG+CGG | 0.771281 | 1.4:+20028121 | MS.gene32956:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTCAATAATTAAAT+TGG | - | chr1.4:20027332-20027351 | None:intergenic | 10.0% |
| !! | GTTTATTCAATAATTAAATT+GGG | - | chr1.4:20027331-20027350 | None:intergenic | 10.0% |
| !!! | AGTTTTTGAAATTAAATTCA+TGG | + | chr1.4:20027744-20027763 | MS.gene32956:intron | 15.0% |
| !!! | TATTGAATAAACTTTGTTAT+CGG | + | chr1.4:20027339-20027358 | MS.gene32956:intron | 15.0% |
| !! | AATTTGTATGCATTAAAAAG+TGG | - | chr1.4:20028541-20028560 | None:intergenic | 20.0% |
| !! | ACATTGACAAAAATGTTATT+AGG | + | chr1.4:20028507-20028526 | MS.gene32956:intron | 20.0% |
| !! | TAAAAAATACGTAAATACAG+CGG | - | chr1.4:20028600-20028619 | None:intergenic | 20.0% |
| !! | TACGGATTTATTATCATTAA+TGG | + | chr1.4:20027569-20027588 | MS.gene32956:intron | 20.0% |
| !!! | AGATTTTCATGTCATTATAT+TGG | + | chr1.4:20028231-20028250 | MS.gene32956:CDS | 20.0% |
| !!! | CAAAATTTTAGGTAGAAATT+GGG | - | chr1.4:20027527-20027546 | None:intergenic | 20.0% |
| !!! | GTTTTTAGTGTCAAAATTTT+AGG | - | chr1.4:20027538-20027557 | None:intergenic | 20.0% |
| !!! | TCAAAATTTTAGGTAGAAAT+TGG | - | chr1.4:20027528-20027547 | None:intergenic | 20.0% |
| !!! | TTATAATTGCTTTGATTTGA+TGG | + | chr1.4:20027441-20027460 | MS.gene32956:intron | 20.0% |
| !!! | TTTTGAAATTAAATTCATGG+AGG | + | chr1.4:20027747-20027766 | MS.gene32956:intron | 20.0% |
| ! | AAAAAATACGTAAATACAGC+GGG | - | chr1.4:20028599-20028618 | None:intergenic | 25.0% |
| ! | AATCGAAAGAATGAATGAAA+TGG | - | chr1.4:20027238-20027257 | None:intergenic | 25.0% |
| ! | AATGATAATAAATCCGTACA+TGG | - | chr1.4:20027567-20027586 | None:intergenic | 25.0% |
| ! | AATGCACAAAAACTAAAGAT+AGG | + | chr1.4:20028783-20028802 | MS.gene32956:CDS | 25.0% |
| ! | AATTGGGTCAATGATTAAAA+TGG | - | chr1.4:20027315-20027334 | None:intergenic | 25.0% |
| ! | ATTGGGTCAATGATTAAAAT+GGG | - | chr1.4:20027314-20027333 | None:intergenic | 25.0% |
| ! | CATTAATGGAATTCATCATT+TGG | + | chr1.4:20027583-20027602 | MS.gene32956:intron | 25.0% |
| ! | CATTTCTAATTGAAACTCAT+TGG | + | chr1.4:20027993-20028012 | MS.gene32956:intron | 25.0% |
| ! | TATATTGGATGATAGTAGTT+TGG | + | chr1.4:20028246-20028265 | MS.gene32956:CDS | 25.0% |
| ! | TGTTTGATACATATATGCTT+TGG | + | chr1.4:20027879-20027898 | MS.gene32956:intron | 25.0% |
| ! | TTATAACCTTCAATGTGATA+TGG | - | chr1.4:20028872-20028891 | None:intergenic | 25.0% |
| !! | TACAAGAAATCTGAAGTAAT+TGG | - | chr1.4:20027823-20027842 | None:intergenic | 25.0% |
| !! | TTGATTTTCTTTTTCTTGAG+GGG | - | chr1.4:20028379-20028398 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTCTTTTTCTTG+AGG | - | chr1.4:20028381-20028400 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | + | chr1.4:20028202-20028221 | MS.gene32956:CDS | 25.0% |
| !!! | GTTGATTTTCTTTTTCTTGA+GGG | - | chr1.4:20028380-20028399 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | + | chr1.4:20028721-20028740 | MS.gene32956:intron | 25.0% |
| AATCATACCAACTCTTTAAG+TGG | + | chr1.4:20027633-20027652 | MS.gene32956:intron | 30.0% | |
| ATTCACAAAGTTGAATGGTT+TGG | - | chr1.4:20027166-20027185 | None:intergenic | 30.0% | |
| GAATACGAAGATTTGAATGT+TGG | + | chr1.4:20027369-20027388 | MS.gene32956:intron | 30.0% | |
| GATAATTTGACAGTGAAACT+AGG | - | chr1.4:20028848-20028867 | None:intergenic | 30.0% | |
| GTCTGAGTTCAAAATGAATT+GGG | + | chr1.4:20028111-20028130 | MS.gene32956:CDS | 30.0% | |
| TAAAAACAAACAGCCATGTA+CGG | + | chr1.4:20027551-20027570 | MS.gene32956:intron | 30.0% | |
| TAATGGAATTCATCATTTGG+TGG | + | chr1.4:20027586-20027605 | MS.gene32956:intron | 30.0% | |
| TCACAAATTATCATCCCAAT+GGG | + | chr1.4:20028819-20028838 | MS.gene32956:CDS | 30.0% | |
| TTCACAAATTATCATCCCAA+TGG | + | chr1.4:20028818-20028837 | MS.gene32956:CDS | 30.0% | |
| ! | CATACATAGTTTTTCTCACA+TGG | + | chr1.4:20027398-20027417 | MS.gene32956:intron | 30.0% |
| ! | CATGATCAAAACAGTATTGA+GGG | - | chr1.4:20027696-20027715 | None:intergenic | 30.0% |
| ! | GTTCACGTCTTGATTTTTAA+TGG | - | chr1.4:20028655-20028674 | None:intergenic | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | + | chr1.4:20028206-20028225 | MS.gene32956:CDS | 30.0% |
| ! | TGGGTATTTTCATGATCATT+CGG | - | chr1.4:20028352-20028371 | None:intergenic | 30.0% |
| !! | TAATTGCTTTGATTTGATGG+AGG | + | chr1.4:20027444-20027463 | MS.gene32956:intron | 30.0% |
| !! | TTAGTTTTCCAATACAAAGG+AGG | + | chr1.4:20028205-20028224 | MS.gene32956:CDS | 30.0% |
| !!! | ATCTGGTTTTCTTAGGTATT+TGG | + | chr1.4:20027485-20027504 | MS.gene32956:intron | 30.0% |
| AAAATGAATTGGGTACAACG+CGG | + | chr1.4:20028121-20028140 | MS.gene32956:CDS | 35.0% | |
| AAACAGTCCACTTAAAGAGT+TGG | - | chr1.4:20027643-20027662 | None:intergenic | 35.0% | |
| ACTGATTAAGCAAACTGTGT+TGG | - | chr1.4:20027907-20027926 | None:intergenic | 35.0% | |
| ATGTTGCATACTTGCTTATC+TGG | + | chr1.4:20027468-20027487 | MS.gene32956:intron | 35.0% | |
| CAATGATGAACAAGAAGCTA+AGG | + | chr1.4:20028294-20028313 | MS.gene32956:CDS | 35.0% | |
| CATTCAACTTTGTGAATTGC+AGG | + | chr1.4:20027169-20027188 | MS.gene32956:CDS | 35.0% | |
| CCATGATCAAAACAGTATTG+AGG | - | chr1.4:20027697-20027716 | None:intergenic | 35.0% | |
| CTGATTAAGCAAACTGTGTT+GGG | - | chr1.4:20027906-20027925 | None:intergenic | 35.0% | |
| CTGCAATTCACAAAGTTGAA+TGG | - | chr1.4:20027171-20027190 | None:intergenic | 35.0% | |
| GGTCTGAGTTCAAAATGAAT+TGG | + | chr1.4:20028110-20028129 | MS.gene32956:CDS | 35.0% | |
| TTATCGCCATATCACATTGA+AGG | + | chr1.4:20028863-20028882 | MS.gene32956:CDS | 35.0% | |
| ! | ACACAGTTTGCTTAATCAGT+CGG | + | chr1.4:20027907-20027926 | MS.gene32956:intron | 35.0% |
| ! | ATTTCTTAGCTTTCTTACCC+CGG | - | chr1.4:20028766-20028785 | None:intergenic | 35.0% |
| ! | ATTTTGAACTCAGACCCATT+TGG | - | chr1.4:20028106-20028125 | None:intergenic | 35.0% |
| ! | GGTTTTCTTAGGTATTTGGA+TGG | + | chr1.4:20027489-20027508 | MS.gene32956:intron | 35.0% |
| !! | CTCTTTAAGTGGACTGTTTA+AGG | + | chr1.4:20027644-20027663 | MS.gene32956:intron | 35.0% |
| !! | GACTGCATGTTTTTAATCCT+AGG | + | chr1.4:20028573-20028592 | MS.gene32956:intron | 35.0% |
| !!! | CCTCAATACTGTTTTGATCA+TGG | + | chr1.4:20027694-20027713 | MS.gene32956:intron | 35.0% |
| !!! | CTTGCTTATCTGGTTTTCTT+AGG | + | chr1.4:20027478-20027497 | MS.gene32956:intron | 35.0% |
| AATCTGACCCTCCTTTGTAT+TGG | - | chr1.4:20028216-20028235 | None:intergenic | 40.0% | |
| ACATCGCTTAGACTTCCAAA+TGG | + | chr1.4:20028088-20028107 | MS.gene32956:CDS | 40.0% | |
| CATCGCTTAGACTTCCAAAT+GGG | + | chr1.4:20028089-20028108 | MS.gene32956:CDS | 40.0% | |
| GCATCCTTGCAAAAAGTTTC+AGG | + | chr1.4:20028472-20028491 | MS.gene32956:CDS | 40.0% | |
| GGAAATTCGTAGAGAGACAT+TGG | + | chr1.4:20028047-20028066 | MS.gene32956:CDS | 40.0% | |
| TCTTGTATTAGTGCTACGCA+TGG | + | chr1.4:20027836-20027855 | MS.gene32956:intron | 40.0% | |
| TGTCTCTCTACGAATTTCCT+TGG | - | chr1.4:20028046-20028065 | None:intergenic | 40.0% | |
| TGTTCTTGCAGATGATTCCA+AGG | + | chr1.4:20028026-20028045 | MS.gene32956:intron | 40.0% | |
| TTTGGAAGTCTAAGCGATGT+TGG | - | chr1.4:20028088-20028107 | None:intergenic | 40.0% | |
| ! | CTTGCCTGAAACTTTTTGCA+AGG | - | chr1.4:20028479-20028498 | None:intergenic | 40.0% |
| ! | CTTTTTCTTGAGGGGTTGTT+GGG | - | chr1.4:20028371-20028390 | None:intergenic | 40.0% |
| ! | GGTATGATTGAGAGTACAAG+TGG | - | chr1.4:20027622-20027641 | None:intergenic | 40.0% |
| ! | TCTTTTTCTTGAGGGGTTGT+TGG | - | chr1.4:20028372-20028391 | None:intergenic | 40.0% |
| ACACCTCAAGGGACAAACAT+TGG | + | chr1.4:20028427-20028446 | MS.gene32956:CDS | 45.0% | |
| AGTGAAACTAGGACTCCCAT+TGG | - | chr1.4:20028837-20028856 | None:intergenic | 45.0% | |
| ATTAGTGCTACGCATGGCTT+TGG | + | chr1.4:20027842-20027861 | MS.gene32956:intron | 45.0% | |
| CAAGTGTTCACTATGGACGT+GGG | + | chr1.4:20027114-20027133 | MS.gene32956:CDS | 45.0% | |
| CTAATAGAAACTGTGGAGGC+CGG | + | chr1.4:20028744-20028763 | MS.gene32956:CDS | 45.0% | |
| GAGGCTAATAGAAACTGTGG+AGG | + | chr1.4:20028740-20028759 | MS.gene32956:intron | 45.0% | |
| GCAGAGGCTAATAGAAACTG+TGG | + | chr1.4:20028737-20028756 | MS.gene32956:intron | 45.0% | |
| GTGAAACTAGGACTCCCATT+GGG | - | chr1.4:20028836-20028855 | None:intergenic | 45.0% | |
| TAATAGAAACTGTGGAGGCC+GGG | + | chr1.4:20028745-20028764 | MS.gene32956:CDS | 45.0% | |
| TCAAGTGTTCACTATGGACG+TGG | + | chr1.4:20027113-20027132 | MS.gene32956:CDS | 45.0% | |
| TTGCCAATGTTTGTCCCTTG+AGG | - | chr1.4:20028433-20028452 | None:intergenic | 45.0% | |
| ! | ACGATGTTTGGCTTCAGAAC+TGG | + | chr1.4:20028146-20028165 | MS.gene32956:CDS | 45.0% |
| ! | TTTGGCTTCAGAACTGGAAG+AGG | + | chr1.4:20028152-20028171 | MS.gene32956:CDS | 45.0% |
| AATAGAAACTGTGGAGGCCG+GGG | + | chr1.4:20028746-20028765 | MS.gene32956:CDS | 50.0% | |
| TACAACGCGGTGACGATGTT+TGG | + | chr1.4:20028134-20028153 | MS.gene32956:CDS | 50.0% | |
| TACGTAAATACAGCGGGCCT+AGG | - | chr1.4:20028593-20028612 | None:intergenic | 50.0% | |
| ! | ACTAGTGCTGCTACACCTCA+AGG | + | chr1.4:20028415-20028434 | MS.gene32956:CDS | 50.0% |
| ! | CTAGTGCTGCTACACCTCAA+GGG | + | chr1.4:20028416-20028435 | MS.gene32956:CDS | 50.0% |
| GGACGTGGGAGTGAAGCTAA+GGG | + | chr1.4:20027128-20027147 | MS.gene32956:CDS | 55.0% | |
| TGGACGTGGGAGTGAAGCTA+AGG | + | chr1.4:20027127-20027146 | MS.gene32956:CDS | 55.0% | |
| TTTGCGCGCTCTCTCAGATG+TGG | + | chr1.4:20028175-20028194 | MS.gene32956:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20027110 | 20028898 | 20027110 | ID=MS.gene32956 |
| chr1.4 | mRNA | 20027110 | 20028898 | 20027110 | ID=MS.gene32956.t1;Parent=MS.gene32956 |
| chr1.4 | exon | 20027110 | 20027202 | 20027110 | ID=MS.gene32956.t1.exon1;Parent=MS.gene32956.t1 |
| chr1.4 | CDS | 20027110 | 20027202 | 20027110 | ID=cds.MS.gene32956.t1;Parent=MS.gene32956.t1 |
| chr1.4 | exon | 20028037 | 20028493 | 20028037 | ID=MS.gene32956.t1.exon2;Parent=MS.gene32956.t1 |
| chr1.4 | CDS | 20028037 | 20028493 | 20028037 | ID=cds.MS.gene32956.t1;Parent=MS.gene32956.t1 |
| chr1.4 | exon | 20028741 | 20028898 | 20028741 | ID=MS.gene32956.t1.exon3;Parent=MS.gene32956.t1 |
| chr1.4 | CDS | 20028741 | 20028898 | 20028741 | ID=cds.MS.gene32956.t1;Parent=MS.gene32956.t1 |
| Gene Sequence |
| Protein sequence |
