Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33037.t1 | RHN76102.1 | 90.6 | 96 | 9 | 0 | 42 | 137 | 254 | 349 | 2.10E-37 | 166.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33037.t1 | O65015 | 74.1 | 54 | 14 | 0 | 221 | 274 | 154 | 207 | 4.0e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33037.t1 | G7IRV1 | 90.6 | 96 | 9 | 0 | 42 | 137 | 326 | 421 | 1.5e-37 | 166.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene33037.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33037.t1 | MTR_2g097410 | 90.625 | 96 | 9 | 0 | 42 | 137 | 326 | 421 | 7.91e-50 | 176 |
| MS.gene33037.t1 | MTR_3g087300 | 92.857 | 56 | 4 | 0 | 51 | 106 | 153 | 208 | 7.78e-28 | 107 |
| MS.gene33037.t1 | MTR_4g064150 | 63.889 | 72 | 26 | 0 | 66 | 137 | 340 | 411 | 6.59e-26 | 108 |
| MS.gene33037.t1 | MTR_2g089030 | 65.000 | 80 | 26 | 2 | 221 | 300 | 227 | 304 | 1.62e-24 | 103 |
| MS.gene33037.t1 | MTR_4g064160 | 56.522 | 92 | 38 | 1 | 47 | 136 | 274 | 365 | 3.36e-24 | 103 |
| MS.gene33037.t1 | MTR_4g064120 | 62.857 | 70 | 26 | 0 | 68 | 137 | 235 | 304 | 5.18e-23 | 99.8 |
| MS.gene33037.t1 | MTR_4g064180 | 61.429 | 70 | 27 | 0 | 68 | 137 | 235 | 304 | 2.81e-22 | 97.4 |
| MS.gene33037.t1 | MTR_7g062120 | 52.128 | 94 | 41 | 1 | 69 | 158 | 354 | 447 | 2.97e-22 | 97.4 |
| MS.gene33037.t1 | MTR_3g110530 | 93.478 | 46 | 3 | 0 | 176 | 221 | 208 | 253 | 3.37e-22 | 96.3 |
| MS.gene33037.t1 | MTR_2g097390 | 53.165 | 79 | 37 | 0 | 58 | 136 | 246 | 324 | 4.50e-19 | 88.2 |
| MS.gene33037.t1 | MTR_2g097350 | 57.812 | 64 | 27 | 0 | 73 | 136 | 260 | 323 | 2.45e-18 | 85.9 |
| MS.gene33037.t1 | MTR_4g045667 | 56.164 | 73 | 29 | 1 | 205 | 274 | 135 | 207 | 3.96e-18 | 85.1 |
| MS.gene33037.t1 | MTR_2g097463 | 40.000 | 125 | 66 | 3 | 14 | 136 | 222 | 339 | 1.39e-17 | 83.6 |
| MS.gene33037.t1 | MTR_2g097310 | 60.317 | 63 | 22 | 1 | 77 | 136 | 259 | 321 | 2.78e-17 | 82.8 |
| MS.gene33037.t1 | MTR_4g064200 | 62.500 | 56 | 21 | 0 | 81 | 136 | 278 | 333 | 2.03e-15 | 77.0 |
| MS.gene33037.t1 | MTR_2g097467 | 37.584 | 149 | 67 | 7 | 2 | 136 | 202 | 338 | 3.91e-14 | 73.2 |
| MS.gene33037.t1 | MTR_2g097473 | 36.154 | 130 | 64 | 3 | 14 | 136 | 221 | 338 | 8.30e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33037.t1 | AT1G07530 | 52.381 | 84 | 38 | 1 | 55 | 136 | 362 | 445 | 2.41e-20 | 92.0 |
| MS.gene33037.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 69 | 159 | 139 | 247 | 2.62e-19 | 88.6 |
| MS.gene33037.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 69 | 159 | 139 | 247 | 2.62e-19 | 88.6 |
| MS.gene33037.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 69 | 159 | 303 | 411 | 2.94e-19 | 88.6 |
| MS.gene33037.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 69 | 159 | 304 | 412 | 3.17e-19 | 88.6 |
| MS.gene33037.t1 | AT2G32290 | 72.222 | 54 | 15 | 0 | 221 | 274 | 219 | 272 | 5.67e-19 | 87.8 |
| MS.gene33037.t1 | AT2G37650 | 43.137 | 102 | 41 | 1 | 75 | 159 | 335 | 436 | 2.65e-17 | 82.8 |
| MS.gene33037.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 221 | 274 | 156 | 209 | 2.80e-17 | 82.4 |
| MS.gene33037.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 221 | 274 | 103 | 156 | 2.95e-17 | 82.4 |
| MS.gene33037.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 221 | 274 | 103 | 156 | 2.95e-17 | 82.4 |
| MS.gene33037.t1 | AT2G37650 | 43.137 | 102 | 41 | 1 | 75 | 159 | 323 | 424 | 3.35e-17 | 82.4 |
| MS.gene33037.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 221 | 274 | 156 | 209 | 3.38e-17 | 82.4 |
| MS.gene33037.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 67 | 144 | 264 | 341 | 6.32e-17 | 81.6 |
| MS.gene33037.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 67 | 144 | 301 | 378 | 6.54e-17 | 81.6 |
| MS.gene33037.t1 | AT2G29065 | 62.500 | 56 | 21 | 0 | 81 | 136 | 246 | 301 | 9.44e-14 | 72.0 |
| MS.gene33037.t1 | AT5G59450 | 38.889 | 108 | 59 | 2 | 30 | 136 | 175 | 276 | 1.09e-13 | 72.0 |
| MS.gene33037.t1 | AT3G46600 | 35.766 | 137 | 66 | 5 | 42 | 160 | 137 | 269 | 4.33e-13 | 70.1 |
| MS.gene33037.t1 | AT3G46600 | 35.766 | 137 | 66 | 5 | 42 | 160 | 169 | 301 | 4.47e-13 | 70.1 |
| MS.gene33037.t1 | AT4G00490 | 50.000 | 54 | 27 | 0 | 221 | 274 | 236 | 289 | 7.84e-11 | 63.2 |
Find 67 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 1.1:-6364533 | MS.gene33037:CDS |
| GACTGGGTATTTCTTGGTAT+TGG | 0.274714 | 1.1:-6363875 | MS.gene33037:CDS |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 1.1:-6365772 | MS.gene33037:CDS |
| TACCATTAATACCTCTTCTA+TGG | 0.297338 | 1.1:+6368943 | None:intergenic |
| GAAGAGTTATAGAGAGAATA+TGG | 0.309022 | 1.1:-6363990 | MS.gene33037:CDS |
| GGCCATAGAAGAGGTATTAA+TGG | 0.329008 | 1.1:-6368945 | MS.gene33037:intron |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.331779 | 1.1:-6366335 | MS.gene33037:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 1.1:-6364567 | MS.gene33037:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 1.1:-6364524 | MS.gene33037:CDS |
| TGCCTAGACTGGGTATTTCT+TGG | 0.342837 | 1.1:-6363881 | MS.gene33037:CDS |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 1.1:+6365742 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 1.1:-6366423 | MS.gene33037:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 1.1:-6364581 | MS.gene33037:intron |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 1.1:-6366609 | MS.gene33037:intron |
| ATGAATTGTTGAAGCAGAAT+AGG | 0.424251 | 1.1:-6366355 | MS.gene33037:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 1.1:-6366385 | MS.gene33037:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 1.1:-6366433 | MS.gene33037:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 1.1:-6366488 | MS.gene33037:CDS |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 1.1:-6364541 | MS.gene33037:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 1.1:-6363932 | MS.gene33037:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 1.1:-6366451 | MS.gene33037:CDS |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 1.1:-6363680 | MS.gene33037:CDS |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 1.1:-6364523 | MS.gene33037:CDS |
| GCCACTTGAAGGTGGTCTCA+AGG | 0.522314 | 1.1:-6365584 | MS.gene33037:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 1.1:-6364465 | MS.gene33037:intron |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 1.1:+6363734 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 1.1:-6366441 | MS.gene33037:CDS |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 1.1:+6363917 | None:intergenic |
| ATGGTGAAATCAAGGTCGTA+AGG | 0.534375 | 1.1:-6368991 | MS.gene33037:CDS |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 1.1:-6366315 | MS.gene33037:CDS |
| GTCGTTGCGTGCTGAACAAA+AGG | 0.535793 | 1.1:-6366534 | MS.gene33037:CDS |
| AAATTGGAAATGCAGGGGAC+AGG | 0.536511 | 1.1:-6363565 | MS.gene33037:intron |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 1.1:+6366320 | None:intergenic |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 1.1:+6366408 | None:intergenic |
| TCCTTGAGACCACCTTCAAG+TGG | 0.557613 | 1.1:+6365583 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.560190 | 1.1:-6368999 | MS.gene33037:CDS |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 1.1:+6364461 | None:intergenic |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 1.1:-6363716 | MS.gene33037:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 1.1:+6366409 | None:intergenic |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 1.1:-6368954 | MS.gene33037:CDS |
| TTGCGTGCTGAACAAAAGGA+TGG | 0.589695 | 1.1:-6366530 | MS.gene33037:CDS |
| TACCAAGAAATACCCAGTCT+AGG | 0.594121 | 1.1:+6363879 | None:intergenic |
| AATTGAAGCTAAGAAAGATA+AGG | 0.595945 | 1.1:-6368966 | MS.gene33037:CDS |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 1.1:-6363941 | MS.gene33037:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 1.1:-6363951 | MS.gene33037:CDS |
| GAATGCGATTGAAGCGCGCA+TGG | 0.609128 | 1.1:-6366279 | MS.gene33037:intron |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 1.1:-6363684 | MS.gene33037:CDS |
| AAAGCACGTTCGAAGAAACA+AGG | 0.617919 | 1.1:-6366461 | MS.gene33037:CDS |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 1.1:-6369010 | MS.gene33037:CDS |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 1.1:+6363918 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 1.1:-6366485 | MS.gene33037:CDS |
| TGAAGGTGGTCTCAAGGACA+AGG | 0.634896 | 1.1:-6365578 | MS.gene33037:intron |
| TGGTGAAATCAAGGTCGTAA+GGG | 0.637782 | 1.1:-6368990 | MS.gene33037:CDS |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 1.1:-6366519 | MS.gene33037:CDS |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 1.1:-6363947 | MS.gene33037:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 1.1:-6366484 | MS.gene33037:CDS |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 1.1:+6364464 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 1.1:-6366450 | MS.gene33037:CDS |
| TTACGACCTTGATTTCACCA+TGG | 0.665301 | 1.1:+6368993 | None:intergenic |
| GCAGGGGACAGGCTTCCAGT+AGG | 0.671994 | 1.1:-6363554 | None:intergenic |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 1.1:+6364572 | None:intergenic |
| CACGTTCGAAGAAACAAGGG+AGG | 0.689832 | 1.1:-6366457 | MS.gene33037:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 1.1:-6366504 | MS.gene33037:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 1.1:-6366522 | MS.gene33037:CDS |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 1.1:-6366500 | MS.gene33037:CDS |
| TGTACGTGGCAGGTTGACCG+AGG | 0.702164 | 1.1:-6363670 | MS.gene33037:intron |
| AAGCACGTTCGAAGAAACAA+GGG | 0.717525 | 1.1:-6366460 | MS.gene33037:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATGATTTATAGTTTTT+TGG | - | chr1.1:6364081-6364100 | MS.gene33037:intron | 10.0% |
| !!! | TTGTTCATAATTATTTTTTA+TGG | + | chr1.1:6363728-6363747 | None:intergenic | 10.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | + | chr1.1:6367156-6367175 | None:intergenic | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | + | chr1.1:6368668-6368687 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | - | chr1.1:6368352-6368371 | MS.gene33037:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | - | chr1.1:6367362-6367381 | MS.gene33037:intron | 15.0% |
| !! | TAAAAAAAATTCTTTGCATT+GGG | + | chr1.1:6364816-6364835 | None:intergenic | 15.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | - | chr1.1:6365772-6365791 | MS.gene33037:CDS | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | - | chr1.1:6369202-6369221 | MS.gene33037:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | + | chr1.1:6368353-6368372 | None:intergenic | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | - | chr1.1:6366892-6366911 | MS.gene33037:intron | 15.0% |
| !!! | ATATATGTTTAGTTTGATTA+TGG | - | chr1.1:6364038-6364057 | MS.gene33037:intron | 15.0% |
| !!! | ATATTAAATTCCTTTTCTTA+AGG | + | chr1.1:6365111-6365130 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | + | chr1.1:6369169-6369188 | None:intergenic | 15.0% |
| !!! | GATTTTGAAAATACTTTTAT+GGG | - | chr1.1:6364178-6364197 | MS.gene33037:intron | 15.0% |
| !!! | TGTATGTTGATTTTTTTATT+TGG | - | chr1.1:6363997-6364016 | MS.gene33037:CDS | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | - | chr1.1:6367168-6367187 | MS.gene33037:intron | 15.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | - | chr1.1:6367645-6367664 | MS.gene33037:intron | 20.0% |
| !! | AGATTTGATGAAAGTAAAAA+TGG | - | chr1.1:6365285-6365304 | MS.gene33037:intron | 20.0% |
| !! | ATATATGAATCTGTTCAATA+TGG | - | chr1.1:6363674-6363693 | MS.gene33037:CDS | 20.0% |
| !! | ATGATTGAATTGTTCTTATT+TGG | - | chr1.1:6364269-6364288 | MS.gene33037:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | + | chr1.1:6366542-6366561 | None:intergenic | 20.0% |
| !! | GATTTGATGAAAGTAAAAAT+GGG | - | chr1.1:6365286-6365305 | MS.gene33037:intron | 20.0% |
| !! | GTAAAAAAAATTCTTTGCAT+TGG | + | chr1.1:6364817-6364836 | None:intergenic | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | - | chr1.1:6367285-6367304 | MS.gene33037:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | + | chr1.1:6367702-6367721 | None:intergenic | 20.0% |
| !! | TATCTATGATTGTAAATTTG+TGG | - | chr1.1:6365493-6365512 | MS.gene33037:intron | 20.0% |
| !! | TATGTATATTATCTTGCATA+TGG | - | chr1.1:6367308-6367327 | MS.gene33037:intron | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | - | chr1.1:6368452-6368471 | MS.gene33037:intron | 20.0% |
| !! | TATTCTAAATAGATGTTAAC+AGG | + | chr1.1:6364306-6364325 | None:intergenic | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | + | chr1.1:6368531-6368550 | None:intergenic | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | - | chr1.1:6367389-6367408 | MS.gene33037:intron | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | - | chr1.1:6369182-6369201 | MS.gene33037:intron | 20.0% |
| !! | TGTTGAAGTTGTTTATATAT+AGG | - | chr1.1:6365007-6365026 | MS.gene33037:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | - | chr1.1:6363591-6363610 | MS.gene33037:intron | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | + | chr1.1:6366628-6366647 | None:intergenic | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | - | chr1.1:6368283-6368302 | MS.gene33037:intron | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | + | chr1.1:6366627-6366646 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | + | chr1.1:6366729-6366748 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | - | chr1.1:6367783-6367802 | MS.gene33037:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | - | chr1.1:6365857-6365876 | MS.gene33037:intron | 20.0% |
| !!! | GGATTTTGAAAATACTTTTA+TGG | - | chr1.1:6364177-6364196 | MS.gene33037:intron | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | - | chr1.1:6366730-6366749 | MS.gene33037:intron | 20.0% |
| !!! | TATTTAGAATATAGTCTGTT+TGG | - | chr1.1:6364315-6364334 | MS.gene33037:intron | 20.0% |
| !!! | TGCTAAAAAATATTGACTTT+TGG | - | chr1.1:6364503-6364522 | MS.gene33037:CDS | 20.0% |
| !!! | TGTAGCTTAAATTTTGAATT+GGG | - | chr1.1:6365234-6365253 | MS.gene33037:intron | 20.0% |
| !!! | TTATTTGGTGTTTGTTTTAT+AGG | - | chr1.1:6364012-6364031 | MS.gene33037:intron | 20.0% |
| !!! | TTGTAGCTTAAATTTTGAAT+TGG | - | chr1.1:6365233-6365252 | MS.gene33037:intron | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | + | chr1.1:6366720-6366739 | None:intergenic | 20.0% |
| !!! | TTTAGTACTTGATTTTTATC+TGG | - | chr1.1:6364549-6364568 | MS.gene33037:CDS | 20.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | - | chr1.1:6365343-6365362 | MS.gene33037:intron | 25.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | + | chr1.1:6369052-6369071 | None:intergenic | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+AGG | + | chr1.1:6367637-6367656 | None:intergenic | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+AGG | + | chr1.1:6365826-6365845 | None:intergenic | 25.0% |
| ! | AATTGAAGCTAAGAAAGATA+AGG | - | chr1.1:6363817-6363836 | MS.gene33037:intron | 25.0% |
| ! | AGAACACATATAATTGTGTT+TGG | - | chr1.1:6367236-6367255 | MS.gene33037:intron | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | + | chr1.1:6366955-6366974 | None:intergenic | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | - | chr1.1:6367446-6367465 | MS.gene33037:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | - | chr1.1:6366798-6366817 | MS.gene33037:intron | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+GGG | - | chr1.1:6369212-6369231 | MS.gene33037:intron | 25.0% |
| ! | ATGATTGTAAATTTGTGGTA+AGG | - | chr1.1:6365498-6365517 | MS.gene33037:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | + | chr1.1:6367453-6367472 | None:intergenic | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | + | chr1.1:6368564-6368583 | None:intergenic | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | + | chr1.1:6367901-6367920 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | + | chr1.1:6367698-6367717 | None:intergenic | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | - | chr1.1:6366200-6366219 | MS.gene33037:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | + | chr1.1:6366954-6366973 | None:intergenic | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | - | chr1.1:6368089-6368108 | MS.gene33037:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | - | chr1.1:6366911-6366930 | MS.gene33037:intron | 25.0% |
| ! | TATATGAAAATTGGAAATGC+AGG | - | chr1.1:6369211-6369230 | MS.gene33037:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | + | chr1.1:6365737-6365756 | None:intergenic | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | + | chr1.1:6367699-6367718 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | - | chr1.1:6366735-6366754 | MS.gene33037:intron | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | - | chr1.1:6366042-6366061 | MS.gene33037:intron | 25.0% |
| ! | TTTAGATAGTAACATATGAG+AGG | + | chr1.1:6363702-6363721 | None:intergenic | 25.0% |
| ! | TTTATGTATCTTTCCATGAT+TGG | + | chr1.1:6364973-6364992 | None:intergenic | 25.0% |
| !! | ACAAATGAAAGAGTACAATA+TGG | + | chr1.1:6365191-6365210 | None:intergenic | 25.0% |
| !! | ATTTCATGTTTAACTTTGAG+AGG | - | chr1.1:6364377-6364396 | MS.gene33037:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | - | chr1.1:6367171-6367190 | MS.gene33037:intron | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | - | chr1.1:6363632-6363651 | MS.gene33037:intron | 25.0% |
| !! | TACTTTTATGGGTTTTCAAT+TGG | - | chr1.1:6364189-6364208 | MS.gene33037:intron | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | - | chr1.1:6367587-6367606 | MS.gene33037:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | + | chr1.1:6368427-6368446 | None:intergenic | 25.0% |
| !! | TATTTAGAATATAGTCTGTC+TGG | - | chr1.1:6364720-6364739 | MS.gene33037:intron | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | + | chr1.1:6367579-6367598 | None:intergenic | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | - | chr1.1:6367821-6367840 | MS.gene33037:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | - | chr1.1:6368186-6368205 | MS.gene33037:intron | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | - | chr1.1:6367706-6367725 | MS.gene33037:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | + | chr1.1:6366226-6366245 | None:intergenic | 25.0% |
| !! | TTTTTGCCTAATCTTTCTAA+TGG | - | chr1.1:6365817-6365836 | MS.gene33037:intron | 25.0% |
| !!! | AAATTTTGTTTGGTGTTGAA+GGG | - | chr1.1:6364118-6364137 | MS.gene33037:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | - | chr1.1:6366155-6366174 | MS.gene33037:intron | 25.0% |
| !!! | CATGTTTTGGAAATTTTGTT+TGG | - | chr1.1:6364108-6364127 | MS.gene33037:intron | 25.0% |
| !!! | GAGAGGATTTTGATATAATT+TGG | - | chr1.1:6364394-6364413 | MS.gene33037:intron | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | - | chr1.1:6366966-6366985 | MS.gene33037:intron | 25.0% |
| !!! | TGTTTAGTTTGATTATGGTA+TGG | - | chr1.1:6364043-6364062 | MS.gene33037:intron | 25.0% |
| !!! | TTCAAGTTTTGCTTATGTTT+AGG | + | chr1.1:6368632-6368651 | None:intergenic | 25.0% |
| AATTCTCAATGCAATGGTTA+TGG | - | chr1.1:6365988-6366007 | MS.gene33037:intron | 30.0% | |
| AATTTCTGTCTCCTTTACTT+TGG | - | chr1.1:6368042-6368061 | MS.gene33037:intron | 30.0% | |
| AGAAAATTGCCTTGTAAGTA+TGG | + | chr1.1:6363878-6363897 | None:intergenic | 30.0% | |
| AGTGACTATGACAATGTAAT+TGG | - | chr1.1:6367011-6367030 | MS.gene33037:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | - | chr1.1:6366428-6366447 | MS.gene33037:CDS | 30.0% | |
| ATGTATGATAGCAGTAATGT+TGG | - | chr1.1:6364650-6364669 | MS.gene33037:intron | 30.0% | |
| CTTGGTATAAATTGCACATA+AGG | - | chr1.1:6363566-6363585 | MS.gene33037:intron | 30.0% | |
| CTTTATCACTCCTTAAGAAA+AGG | - | chr1.1:6365098-6365117 | MS.gene33037:intron | 30.0% | |
| GAAGAGTTATAGAGAGAATA+TGG | - | chr1.1:6368793-6368812 | MS.gene33037:intron | 30.0% | |
| GGAAATAATTCTCAATGCAA+TGG | - | chr1.1:6365982-6366001 | MS.gene33037:intron | 30.0% | |
| TAATCTAAACCTGTTTCAGA+TGG | + | chr1.1:6364791-6364810 | None:intergenic | 30.0% | |
| TACCATTAATACCTCTTCTA+TGG | + | chr1.1:6363843-6363862 | None:intergenic | 30.0% | |
| TATGAAAATTGGAAATGCAG+GGG | - | chr1.1:6369213-6369232 | MS.gene33037:intron | 30.0% | |
| TCATTTAAACTTACAGACAG+TGG | + | chr1.1:6368598-6368617 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | - | chr1.1:6367090-6367109 | MS.gene33037:intron | 30.0% | |
| TTTAGTAAAATGGCAAGTCA+TGG | + | chr1.1:6369159-6369178 | None:intergenic | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | + | chr1.1:6367044-6367063 | None:intergenic | 30.0% | |
| ! | AACTGAGCATTTAAAATCTC+TGG | + | chr1.1:6365473-6365492 | None:intergenic | 30.0% |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | + | chr1.1:6365941-6365960 | None:intergenic | 30.0% |
| ! | ATGTGTTGTGACATGTTTTT+GGG | - | chr1.1:6363947-6363966 | MS.gene33037:CDS | 30.0% |
| ! | CAAATGGTGTAAAAGCATAT+TGG | + | chr1.1:6367140-6367159 | None:intergenic | 30.0% |
| ! | CACAAGATTCTAGAGAAAAT+AGG | - | chr1.1:6364461-6364480 | MS.gene33037:intron | 30.0% |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | - | chr1.1:6366762-6366781 | MS.gene33037:intron | 30.0% |
| ! | GATTTGGTTTCTAAACCATA+AGG | + | chr1.1:6368411-6368430 | None:intergenic | 30.0% |
| ! | GGAATTTTGAACTTCATTGA+TGG | - | chr1.1:6367257-6367276 | MS.gene33037:intron | 30.0% |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | - | chr1.1:6365549-6365568 | MS.gene33037:intron | 30.0% |
| ! | TTGGTTTGATACATTTAGCT+TGG | - | chr1.1:6364413-6364432 | MS.gene33037:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | + | chr1.1:6366838-6366857 | None:intergenic | 30.0% |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | - | chr1.1:6363748-6363767 | MS.gene33037:CDS | 30.0% |
| !!! | ACAATTTTTTTCCTTACCCA+TGG | - | chr1.1:6367499-6367518 | MS.gene33037:intron | 30.0% |
| !!! | ATTTAGCTTGGTGTTTTTGA+TGG | - | chr1.1:6364425-6364444 | MS.gene33037:intron | 30.0% |
| !!! | GAAATTTTGTTTGGTGTTGA+AGG | - | chr1.1:6364117-6364136 | MS.gene33037:intron | 30.0% |
| !!! | GTTTTTTGGTATGCATGTTT+TGG | - | chr1.1:6364095-6364114 | MS.gene33037:intron | 30.0% |
| !!! | TTTTACAGAAAAGAGCATTC+TGG | - | chr1.1:6364831-6364850 | MS.gene33037:intron | 30.0% |
| AAATTGCCTTGTAAGTATGG+TGG | + | chr1.1:6363875-6363894 | None:intergenic | 35.0% | |
| AAATTTGTGGTAAGGCCAAT+TGG | - | chr1.1:6365506-6365525 | MS.gene33037:intron | 35.0% | |
| AACACCAATTAAGGGAACTA+AGG | + | chr1.1:6368748-6368767 | None:intergenic | 35.0% | |
| AACTTCATGAGTACCAATCA+TGG | - | chr1.1:6364957-6364976 | MS.gene33037:intron | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | - | chr1.1:6365719-6365738 | MS.gene33037:intron | 35.0% | |
| ACACCAATTAAGGGAACTAA+GGG | + | chr1.1:6368747-6368766 | None:intergenic | 35.0% | |
| AGACTTACAAATCCTTAGAC+AGG | + | chr1.1:6367117-6367136 | None:intergenic | 35.0% | |
| AGAGTAATCAGCCAAAGTAA+AGG | + | chr1.1:6368056-6368075 | None:intergenic | 35.0% | |
| AGATAGTGATCCTATGATAG+AGG | - | chr1.1:6365404-6365423 | MS.gene33037:intron | 35.0% | |
| AGCTGATAATCTGTGTTTCA+AGG | - | chr1.1:6365623-6365642 | MS.gene33037:intron | 35.0% | |
| CATATAGTTGAAGAACAGGT+AGG | + | chr1.1:6367633-6367652 | None:intergenic | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | - | chr1.1:6368143-6368162 | MS.gene33037:intron | 35.0% | |
| CGTGTATGCATATATGTTCA+TGG | - | chr1.1:6368986-6369005 | MS.gene33037:CDS | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | - | chr1.1:6368077-6368096 | MS.gene33037:intron | 35.0% | |
| CTGCATCAAACACCAATTAA+GGG | + | chr1.1:6368756-6368775 | None:intergenic | 35.0% | |
| CTGTGTTGGAATTGATATTG+GGG | + | chr1.1:6365955-6365974 | None:intergenic | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | + | chr1.1:6369133-6369152 | None:intergenic | 35.0% | |
| GAGTGAAATCCACATAACAA+AGG | + | chr1.1:6368214-6368233 | None:intergenic | 35.0% | |
| GCGTAAAAATAAGGAAGACA+GGG | + | chr1.1:6364914-6364933 | None:intergenic | 35.0% | |
| GCTGTGTTGGAATTGATATT+GGG | + | chr1.1:6365956-6365975 | None:intergenic | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | - | chr1.1:6365433-6365452 | MS.gene33037:intron | 35.0% | |
| GTATCCTGCATATTGTTTCA+GGG | - | chr1.1:6369015-6369034 | MS.gene33037:CDS | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | + | chr1.1:6368509-6368528 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | - | chr1.1:6368216-6368235 | MS.gene33037:intron | 35.0% | |
| TAAAAATAAGGAAGACAGGG+AGG | + | chr1.1:6364911-6364930 | None:intergenic | 35.0% | |
| TATTGCTGAAAATGTGTGTC+TGG | - | chr1.1:6364156-6364175 | MS.gene33037:intron | 35.0% | |
| TCTGCATCAAACACCAATTA+AGG | + | chr1.1:6368757-6368776 | None:intergenic | 35.0% | |
| TGAACATATATGCATACACG+TGG | + | chr1.1:6368986-6369005 | None:intergenic | 35.0% | |
| TGAATTGGGTGTTCTTATTG+AGG | - | chr1.1:6365248-6365267 | MS.gene33037:intron | 35.0% | |
| TGAGTAATTGAAGACTCTTG+TGG | - | chr1.1:6364241-6364260 | MS.gene33037:intron | 35.0% | |
| TGCTGTGTTGGAATTGATAT+TGG | + | chr1.1:6365957-6365976 | None:intergenic | 35.0% | |
| TGGAATTGATATTGGGGAAA+AGG | + | chr1.1:6365949-6365968 | None:intergenic | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | - | chr1.1:6365432-6365451 | MS.gene33037:intron | 35.0% | |
| TGTATCCTGCATATTGTTTC+AGG | - | chr1.1:6369014-6369033 | MS.gene33037:CDS | 35.0% | |
| TTCTCTATAGGTCTGCTTTA+CGG | - | chr1.1:6368464-6368483 | MS.gene33037:intron | 35.0% | |
| TTGTGTTTGTTCATGAAGGT+TGG | - | chr1.1:6366802-6366821 | MS.gene33037:intron | 35.0% | |
| TTTCCCTTAGTTCCCTTAAT+TGG | - | chr1.1:6368741-6368760 | MS.gene33037:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | - | chr1.1:6368168-6368187 | MS.gene33037:intron | 35.0% |
| ! | AACCATGTTGACTACCTAAA+AGG | + | chr1.1:6367738-6367757 | None:intergenic | 35.0% |
| ! | ACTTACAAGGCAATTTTCTG+AGG | - | chr1.1:6363879-6363898 | MS.gene33037:CDS | 35.0% |
| ! | ACTTCATTGATGGTTGAAGT+AGG | - | chr1.1:6367267-6367286 | MS.gene33037:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | + | chr1.1:6366567-6366586 | None:intergenic | 35.0% |
| ! | CATGTGTTGTGACATGTTTT+TGG | - | chr1.1:6363946-6363965 | MS.gene33037:CDS | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | - | chr1.1:6367590-6367609 | MS.gene33037:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | - | chr1.1:6368202-6368221 | MS.gene33037:intron | 35.0% |
| ! | GACTTCAGTTACTTTCATCT+TGG | - | chr1.1:6365578-6365597 | MS.gene33037:intron | 35.0% |
| ! | GCATAAGCAGCTAATTCTTT+TGG | - | chr1.1:6367945-6367964 | MS.gene33037:intron | 35.0% |
| ! | TGAGCTTTGGCGTAAAAATA+AGG | + | chr1.1:6364923-6364942 | None:intergenic | 35.0% |
| ! | TGATTTTCGCAACTTCCTTA+TGG | - | chr1.1:6368393-6368412 | MS.gene33037:intron | 35.0% |
| ! | TTTTTGCTACAGGTTCTACA+TGG | - | chr1.1:6366165-6366184 | MS.gene33037:intron | 35.0% |
| !! | CACTTTTAGGTCATTGCTTT+AGG | - | chr1.1:6367796-6367815 | MS.gene33037:intron | 35.0% |
| !! | GTGTTTTTGATGGTTACAGT+TGG | - | chr1.1:6364435-6364454 | MS.gene33037:intron | 35.0% |
| !! | TCTGGTCTCATCATTTTTCT+TGG | - | chr1.1:6364738-6364757 | MS.gene33037:intron | 35.0% |
| !! | TGGTCTCATCATTTTTCTTG+AGG | - | chr1.1:6364335-6364354 | MS.gene33037:intron | 35.0% |
| !! | TTTTTCAGAATGCCTAGACT+GGG | - | chr1.1:6368892-6368911 | MS.gene33037:intron | 35.0% |
| !!! | ATGTTTTTGGGTATGTTTGG+TGG | - | chr1.1:6363959-6363978 | MS.gene33037:CDS | 35.0% |
| !!! | GACATGTTTTTGGGTATGTT+TGG | - | chr1.1:6363956-6363975 | MS.gene33037:CDS | 35.0% |
| AAAGCACGTTCGAAGAAACA+AGG | - | chr1.1:6366322-6366341 | MS.gene33037:CDS | 40.0% | |
| AAGCACGTTCGAAGAAACAA+GGG | - | chr1.1:6366323-6366342 | MS.gene33037:CDS | 40.0% | |
| ACTAAGCCACCATACTTACA+AGG | - | chr1.1:6363866-6363885 | MS.gene33037:CDS | 40.0% | |
| AGATATCTAAGTTCTCCAGC+AGG | + | chr1.1:6368869-6368888 | None:intergenic | 40.0% | |
| AGTTATCACCAATCTGACCA+TGG | + | chr1.1:6367519-6367538 | None:intergenic | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | - | chr1.1:6365687-6365706 | MS.gene33037:intron | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | - | chr1.1:6368842-6368861 | MS.gene33037:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | + | chr1.1:6365417-6365436 | None:intergenic | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | - | chr1.1:6365412-6365431 | MS.gene33037:intron | 40.0% | |
| ATGGCAGACAGATGCATATA+AGG | + | chr1.1:6365172-6365191 | None:intergenic | 40.0% | |
| ATGGTGAAATCAAGGTCGTA+AGG | - | chr1.1:6363792-6363811 | MS.gene33037:intron | 40.0% | |
| CAATTCCAACACAGCAATCA+GGG | - | chr1.1:6365961-6365980 | MS.gene33037:intron | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | - | chr1.1:6368836-6368855 | MS.gene33037:intron | 40.0% | |
| CTCTTGAAATCGCTTCTAGA+TGG | + | chr1.1:6366014-6366033 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr1.1:6366398-6366417 | MS.gene33037:CDS | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | - | chr1.1:6363829-6363848 | MS.gene33037:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | + | chr1.1:6368501-6368520 | None:intergenic | 40.0% | |
| GACTGGGTATTTCTTGGTAT+TGG | - | chr1.1:6368908-6368927 | MS.gene33037:intron | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | + | chr1.1:6368868-6368887 | None:intergenic | 40.0% | |
| GATTACTCTGCTACAAGTGA+TGG | - | chr1.1:6368067-6368086 | MS.gene33037:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | - | chr1.1:6368076-6368095 | MS.gene33037:intron | 40.0% | |
| GCTTTACTCATGATGCTGAA+AGG | - | chr1.1:6369067-6369086 | MS.gene33037:intron | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | + | chr1.1:6366606-6366625 | None:intergenic | 40.0% | |
| GGCGTAAAAATAAGGAAGAC+AGG | + | chr1.1:6364915-6364934 | None:intergenic | 40.0% | |
| GTGAGTCTTCACATACACTA+AGG | + | chr1.1:6367481-6367500 | None:intergenic | 40.0% | |
| GTTATCACCAATCTGACCAT+GGG | + | chr1.1:6367518-6367537 | None:intergenic | 40.0% | |
| TACATGCCATGGTGAAATCA+AGG | - | chr1.1:6363784-6363803 | MS.gene33037:intron | 40.0% | |
| TACCAAGAAATACCCAGTCT+AGG | + | chr1.1:6368907-6368926 | None:intergenic | 40.0% | |
| TAGTGATCCTATGATAGAGG+TGG | - | chr1.1:6365407-6365426 | MS.gene33037:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | + | chr1.1:6365693-6365712 | None:intergenic | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | + | chr1.1:6365969-6365988 | None:intergenic | 40.0% | |
| TCAATTCCAACACAGCAATC+AGG | - | chr1.1:6365960-6365979 | MS.gene33037:intron | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | - | chr1.1:6366261-6366280 | MS.gene33037:intron | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | - | chr1.1:6368832-6368851 | MS.gene33037:intron | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | - | chr1.1:6365532-6365551 | MS.gene33037:intron | 40.0% | |
| TGGTGAAATCAAGGTCGTAA+GGG | - | chr1.1:6363793-6363812 | MS.gene33037:intron | 40.0% | |
| TTACGACCTTGATTTCACCA+TGG | + | chr1.1:6363793-6363812 | None:intergenic | 40.0% | |
| TTGCTACACTCACATACCTT+TGG | - | chr1.1:6365674-6365693 | MS.gene33037:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | - | chr1.1:6368162-6368181 | MS.gene33037:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | + | chr1.1:6366377-6366396 | None:intergenic | 40.0% | |
| TTTCAGATGGATCGTTCTAG+AGG | + | chr1.1:6364778-6364797 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | - | chr1.1:6366118-6366137 | MS.gene33037:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | - | chr1.1:6365583-6365602 | MS.gene33037:CDS | 40.0% |
| ! | CTAGATGGCATTCACCTTTT+AGG | - | chr1.1:6367721-6367740 | MS.gene33037:intron | 40.0% |
| ! | TAGAACGATCCATCTGAAAC+AGG | - | chr1.1:6364779-6364798 | MS.gene33037:intron | 40.0% |
| ! | TCAGTTACTTTCATCTTGGC+AGG | - | chr1.1:6365582-6365601 | MS.gene33037:CDS | 40.0% |
| !! | AATGAACTTGCTACATGCCA+TGG | - | chr1.1:6363773-6363792 | MS.gene33037:intron | 40.0% |
| !! | CACCTTTTAGGTAGTCAACA+TGG | - | chr1.1:6367733-6367752 | MS.gene33037:intron | 40.0% |
| !! | GGCCATAGAAGAGGTATTAA+TGG | - | chr1.1:6363838-6363857 | MS.gene33037:intron | 40.0% |
| !! | TATGTGCTGCTTATGAGCTT+TGG | + | chr1.1:6364936-6364955 | None:intergenic | 40.0% |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | + | chr1.1:6365930-6365949 | None:intergenic | 40.0% |
| !!! | CTTTTTCAGAATGCCTAGAC+TGG | - | chr1.1:6368891-6368910 | MS.gene33037:intron | 40.0% |
| AAACAGCATCTCGTCTTTCG+CGG | - | chr1.1:6368242-6368261 | MS.gene33037:intron | 45.0% | |
| AAATTGGAAATGCAGGGGAC+AGG | - | chr1.1:6369218-6369237 | MS.gene33037:intron | 45.0% | |
| AAGGCAAGCAACTGGTTACA+TGG | + | chr1.1:6365922-6365941 | None:intergenic | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | - | chr1.1:6366264-6366283 | MS.gene33037:intron | 45.0% | |
| AGAATGACCTCACGACCAAT+TGG | + | chr1.1:6365524-6365543 | None:intergenic | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr1.1:6366350-6366369 | MS.gene33037:CDS | 45.0% | |
| AGCACCCTGAAACAATATGC+AGG | + | chr1.1:6369022-6369041 | None:intergenic | 45.0% | |
| AGGTGATGCATCACAGAGAA+TGG | - | chr1.1:6366468-6366487 | MS.gene33037:CDS | 45.0% | |
| ATCTTGCATGGTCCTGTCTA+AGG | - | chr1.1:6367102-6367121 | MS.gene33037:intron | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | - | chr1.1:6368260-6368279 | MS.gene33037:intron | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | + | chr1.1:6366378-6366397 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr1.1:6366333-6366352 | MS.gene33037:CDS | 45.0% | |
| GAAGACAGGGAGGAATATCA+AGG | + | chr1.1:6364901-6364920 | None:intergenic | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | - | chr1.1:6368259-6368278 | MS.gene33037:intron | 45.0% | |
| TGCCTAGACTGGGTATTTCT+TGG | - | chr1.1:6368902-6368921 | MS.gene33037:intron | 45.0% | |
| TTCCTTACCCATGGTCAGAT+TGG | - | chr1.1:6367508-6367527 | MS.gene33037:intron | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | - | chr1.1:6366253-6366272 | MS.gene33037:intron | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | - | chr1.1:6369099-6369118 | MS.gene33037:intron | 45.0% |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | - | chr1.1:6365600-6365619 | MS.gene33037:CDS | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr1.1:6366360-6366379 | MS.gene33037:CDS | 45.0% |
| !! | ACACAGGTTGGTGAACTTGA+TGG | - | chr1.1:6366295-6366314 | MS.gene33037:CDS | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | - | chr1.1:6366448-6366467 | MS.gene33037:CDS | 45.0% |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | - | chr1.1:6367188-6367207 | MS.gene33037:intron | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr1.1:6366299-6366318 | MS.gene33037:CDS | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | - | chr1.1:6367191-6367210 | MS.gene33037:intron | 45.0% |
| !! | ATAAAAAAAATATTGAAATA+TGG | + | chr1.1:6366861-6366880 | None:intergenic | 5.0% |
| !!! | TTCAATATTTTTTTTATTTA+TGG | - | chr1.1:6366864-6366883 | MS.gene33037:intron | 5.0% |
| ACCATCTGGAGAAGAAGAGG+AGG | + | chr1.1:6368322-6368341 | None:intergenic | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | - | chr1.1:6368318-6368337 | MS.gene33037:intron | 50.0% | |
| ATAGGCAACGCGGAGTTTGA+AGG | + | chr1.1:6368491-6368510 | None:intergenic | 50.0% | |
| CACCAATCTGACCATGGGTA+AGG | + | chr1.1:6367513-6367532 | None:intergenic | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | - | chr1.1:6366326-6366345 | MS.gene33037:CDS | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | - | chr1.1:6366174-6366193 | MS.gene33037:intron | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | + | chr1.1:6368325-6368344 | None:intergenic | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr1.1:6366332-6366351 | MS.gene33037:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr1.1:6366466-6366485 | None:intergenic | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | - | chr1.1:6369103-6369122 | MS.gene33037:intron | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | + | chr1.1:6367933-6367952 | None:intergenic | 50.0% | |
| GGTCGTGAGGTCATTCTCAA+AGG | - | chr1.1:6365527-6365546 | MS.gene33037:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | - | chr1.1:6366249-6366268 | MS.gene33037:intron | 50.0% | |
| GTGGAGAGTAGAACACAGGT+TGG | - | chr1.1:6366283-6366302 | MS.gene33037:CDS | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | + | chr1.1:6367203-6367222 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | - | chr1.1:6368250-6368269 | MS.gene33037:intron | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | - | chr1.1:6367205-6367224 | MS.gene33037:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | - | chr1.1:6366279-6366298 | MS.gene33037:intron | 50.0% |
| !! | CAGGTTGGTGAACTTGATGG+AGG | - | chr1.1:6366298-6366317 | MS.gene33037:CDS | 50.0% |
| !! | CTTTGGAGTCACGAACCATC+TGG | + | chr1.1:6368336-6368355 | None:intergenic | 50.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | - | chr1.1:6367873-6367892 | MS.gene33037:intron | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr1.1:6366342-6366361 | MS.gene33037:CDS | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | - | chr1.1:6367868-6367887 | MS.gene33037:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | + | chr1.1:6367878-6367897 | None:intergenic | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | - | chr1.1:6366504-6366523 | MS.gene33037:CDS | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | - | chr1.1:6367199-6367218 | MS.gene33037:intron | 55.0% | |
| GGTAAGGCCAATTGGTCGTG+AGG | - | chr1.1:6365514-6365533 | MS.gene33037:intron | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | + | chr1.1:6367928-6367947 | None:intergenic | 55.0% | |
| ! | GCAGGTTGACCGAGGTATGA+TGG | - | chr1.1:6369121-6369140 | MS.gene33037:intron | 55.0% |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | + | chr1.1:6367874-6367893 | None:intergenic | 55.0% |
| ACGCCGCACCTTGGTTGTAG+AGG | - | chr1.1:6367922-6367941 | MS.gene33037:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | - | chr1.1:6367923-6367942 | MS.gene33037:intron | 60.0% | |
| GCGATTGAAGCGCGCATGGT+TGG | - | chr1.1:6366508-6366527 | MS.gene33037:CDS | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | - | chr1.1:6369113-6369132 | MS.gene33037:intron | 60.0% |
| ACGTCTGCAACGCCGCACCT+TGG | - | chr1.1:6367913-6367932 | MS.gene33037:intron | 65.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | - | chr1.1:6368851-6368870 | MS.gene33037:intron | 65.0% | |
| GCAGGGGACAGGCTTCCAGT+AGG | - | chr1.1:6369229-6369248 | MS.gene33037:intron | 65.0% | |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | - | chr1.1:6366514-6366533 | MS.gene33037:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 6363555 | 6369250 | 6363555 | ID=MS.gene33037 |
| chr1.1 | mRNA | 6363555 | 6369250 | 6363555 | ID=MS.gene33037.t1;Parent=MS.gene33037 |
| chr1.1 | exon | 6369236 | 6369250 | 6369236 | ID=MS.gene33037.t1.exon1;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6369236 | 6369250 | 6369236 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6368946 | 6369035 | 6368946 | ID=MS.gene33037.t1.exon2;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6368946 | 6369035 | 6368946 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6366610 | 6366628 | 6366610 | ID=MS.gene33037.t1.exon3;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6366610 | 6366628 | 6366610 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6366280 | 6366563 | 6366280 | ID=MS.gene33037.t1.exon4;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6366280 | 6366563 | 6366280 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6365753 | 6365809 | 6365753 | ID=MS.gene33037.t1.exon5;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6365753 | 6365809 | 6365753 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6365579 | 6365641 | 6365579 | ID=MS.gene33037.t1.exon6;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6365579 | 6365641 | 6365579 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6364466 | 6364597 | 6364466 | ID=MS.gene33037.t1.exon7;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6364466 | 6364597 | 6364466 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6363865 | 6364029 | 6363865 | ID=MS.gene33037.t1.exon8;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6363865 | 6364029 | 6363865 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6363671 | 6363769 | 6363671 | ID=MS.gene33037.t1.exon9;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6363671 | 6363769 | 6363671 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| chr1.1 | exon | 6363555 | 6363572 | 6363555 | ID=MS.gene33037.t1.exon10;Parent=MS.gene33037.t1 |
| chr1.1 | CDS | 6363555 | 6363572 | 6363555 | ID=cds.MS.gene33037.t1;Parent=MS.gene33037.t1 |
| Gene Sequence |
| Protein sequence |
