AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33193

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33193.t1 MTR_1g012610 95.687 626 25 2 1 624 15 640 0.0 1236
MS.gene33193.t1 MTR_1g012610 95.687 626 25 2 1 624 6 631 0.0 1234
MS.gene33193.t1 MTR_1g012610 95.687 626 25 2 1 624 16 641 0.0 1233
MS.gene33193.t1 MTR_3g014090 31.229 301 175 6 38 311 141 436 4.18e-36 145
MS.gene33193.t1 MTR_0137s0080 30.183 328 194 7 14 311 114 436 4.33e-36 145
MS.gene33193.t1 MTR_3g014090 31.229 301 175 6 38 311 139 434 5.30e-36 145
MS.gene33193.t1 MTR_5g023150 26.689 296 193 10 21 311 178 454 3.42e-22 100
MS.gene33193.t1 MTR_5g023150 26.689 296 193 10 21 311 275 551 5.51e-22 100
MS.gene33193.t1 MTR_4g088755 29.293 198 132 3 119 315 116 306 7.31e-20 92.0
MS.gene33193.t1 MTR_4g088745 29.293 198 132 3 119 315 121 311 8.45e-20 91.7
MS.gene33193.t1 MTR_5g066490 25.497 302 203 8 19 313 623 909 2.37e-18 90.1
MS.gene33193.t1 MTR_4g088750 28.283 198 134 3 119 315 277 467 3.80e-18 88.2
MS.gene33193.t1 MTR_2g013900 29.293 198 132 3 119 315 238 428 1.22e-17 86.7
MS.gene33193.t1 MTR_1g113960 24.917 301 200 11 25 319 285 565 6.65e-17 84.7
MS.gene33193.t1 MTR_3g100090 25.733 307 203 9 19 315 630 921 1.20e-16 84.3
MS.gene33193.t1 MTR_1g113960 25.676 296 190 12 25 314 285 556 5.70e-16 81.6
MS.gene33193.t1 MTR_3g078110 22.785 316 205 8 15 305 34 335 9.16e-16 79.7
MS.gene33193.t1 MTR_3g101210 26.642 274 179 8 46 310 313 573 1.02e-15 80.9
MS.gene33193.t1 MTR_3g101210 26.642 274 179 8 46 310 313 573 1.15e-15 81.3
MS.gene33193.t1 MTR_2g020380 35.766 137 83 4 130 263 81 215 5.99e-14 75.9
MS.gene33193.t1 MTR_5g006560 26.087 184 129 3 119 301 181 358 6.57e-14 74.3
MS.gene33193.t1 MTR_4g049730 28.313 166 106 5 139 302 91 245 6.59e-14 74.3
MS.gene33193.t1 MTR_8g107000 25.180 278 183 9 33 305 725 982 6.94e-14 75.9
MS.gene33193.t1 MTR_1g103270 23.810 189 137 3 119 306 173 355 7.80e-14 73.9
MS.gene33193.t1 MTR_5g006560 26.087 184 129 3 119 301 215 392 1.32e-13 73.6
MS.gene33193.t1 MTR_6g079540 31.056 161 103 4 147 305 511 665 2.69e-13 73.6
MS.gene33193.t1 MTR_6g079540 31.056 161 103 4 147 305 759 913 2.96e-13 73.6
MS.gene33193.t1 MTR_4g132860 25.253 198 139 4 119 315 155 344 3.95e-13 71.6
MS.gene33193.t1 MTR_4g082325 24.837 306 203 11 21 314 121 411 4.24e-13 72.0
MS.gene33193.t1 MTR_5g010730 28.977 176 109 5 147 312 522 691 7.46e-13 72.0
MS.gene33193.t1 MTR_7g092360 23.308 266 190 6 38 302 14 266 8.30e-13 72.0
MS.gene33193.t1 MTR_5g010730 28.977 176 109 5 147 312 577 746 9.99e-13 71.6
MS.gene33193.t1 MTR_3g114900 22.909 275 177 5 40 304 270 519 1.14e-12 71.2
MS.gene33193.t1 MTR_1g061190 28.322 286 176 11 31 308 549 813 1.71e-12 71.2
MS.gene33193.t1 MTR_1g081790 24.841 314 197 10 10 305 650 942 2.98e-12 70.5
MS.gene33193.t1 MTR_2g023890 27.941 272 147 13 46 301 11 249 3.35e-11 65.5
MS.gene33193.t1 MTR_2g040510 26.000 200 129 7 115 302 138 330 3.48e-11 65.9
MS.gene33193.t1 MTR_5g059880 27.381 168 108 5 135 301 286 440 5.03e-11 65.9
MS.gene33193.t1 MTR_1g026160 22.222 297 194 7 27 312 132 402 7.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33193.t1 AT4G32250 63.130 575 200 6 10 580 14 580 0.0 739
MS.gene33193.t1 AT4G32250 63.130 575 200 6 10 580 14 580 0.0 739
MS.gene33193.t1 AT4G32250 63.130 575 200 6 10 580 14 580 0.0 739
MS.gene33193.t1 AT5G13530 31.894 301 172 9 40 311 137 433 2.82e-36 146
MS.gene33193.t1 AT5G13530 31.894 301 172 9 40 311 137 433 2.90e-36 146
MS.gene33193.t1 AT4G24480 26.866 335 204 10 8 316 624 943 3.43e-19 92.8
MS.gene33193.t1 AT4G24480 26.888 331 204 10 8 316 624 938 2.43e-18 90.1
MS.gene33193.t1 AT4G24480 26.888 331 204 10 8 316 624 938 2.62e-18 89.7
MS.gene33193.t1 AT4G35780 23.779 307 208 11 15 314 264 551 5.84e-18 88.2
MS.gene33193.t1 AT4G38470 24.839 310 209 10 8 312 257 547 9.60e-18 87.4
MS.gene33193.t1 AT4G38470 25.484 310 203 11 8 312 257 543 2.14e-17 86.3
MS.gene33193.t1 AT2G17700 24.242 297 201 11 20 311 265 542 2.27e-17 86.3
MS.gene33193.t1 AT1G05100 32.044 181 106 7 127 301 89 258 2.90e-16 80.9
MS.gene33193.t1 AT3G63260 25.521 192 135 3 116 305 178 363 1.06e-15 80.1
MS.gene33193.t1 AT3G01490 22.772 303 212 6 19 305 87 383 2.03e-15 79.3
MS.gene33193.t1 AT4G26890 28.108 185 119 4 120 302 77 249 1.34e-14 77.0
MS.gene33193.t1 AT5G01850 27.363 201 131 5 118 311 90 282 1.76e-14 75.5
MS.gene33193.t1 AT5G01850 27.363 201 131 5 118 311 114 306 2.02e-14 75.5
MS.gene33193.t1 AT3G46930 26.131 199 138 4 119 315 240 431 2.98e-14 75.9
MS.gene33193.t1 AT3G46930 26.131 199 138 4 119 315 275 466 3.26e-14 76.3
MS.gene33193.t1 AT4G38470 25.856 263 171 10 8 265 257 500 4.42e-14 75.5
MS.gene33193.t1 AT1G08720 26.761 284 182 9 33 311 665 927 1.08e-13 75.1
MS.gene33193.t1 AT1G62400 25.253 198 139 4 119 315 161 350 1.47e-13 73.2
MS.gene33193.t1 AT5G11850 24.818 274 184 7 38 306 607 863 2.95e-13 73.6
MS.gene33193.t1 AT1G73660 24.088 274 186 7 38 306 746 1002 5.03e-13 73.2
MS.gene33193.t1 AT1G32320 26.493 268 163 11 46 302 54 298 6.06e-13 70.5
MS.gene33193.t1 AT5G58950 25.126 199 141 3 119 316 284 475 7.61e-13 71.6
MS.gene33193.t1 AT2G42640 28.571 182 118 6 124 305 567 736 1.58e-12 71.2
MS.gene33193.t1 AT3G45790 28.571 231 143 6 30 250 92 310 1.82e-12 69.7
MS.gene33193.t1 AT2G42640 28.571 182 118 6 124 305 605 774 2.31e-12 70.9
MS.gene33193.t1 AT1G18160 24.088 274 186 7 38 306 713 969 2.87e-12 70.5
MS.gene33193.t1 AT3G46140 27.897 233 146 6 28 250 90 310 6.92e-12 68.2
MS.gene33193.t1 AT5G03730 26.071 280 180 11 33 305 547 806 6.98e-12 69.3
MS.gene33193.t1 AT5G03730 26.071 280 180 11 33 305 547 806 6.98e-12 69.3
MS.gene33193.t1 AT4G23050 29.299 157 103 4 147 301 567 717 9.95e-12 68.6
MS.gene33193.t1 AT4G23050 29.299 157 103 4 147 301 566 716 1.00e-11 68.6
MS.gene33193.t1 AT4G29810 27.363 201 125 8 115 304 147 337 1.27e-11 67.0
MS.gene33193.t1 AT4G29810 27.136 199 124 8 115 302 138 326 3.85e-11 65.5
MS.gene33193.t1 AT4G29810 27.136 199 124 8 115 302 147 335 3.97e-11 65.5

Find 178 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGAGTTGGGAGGCTTTC+TGG 0.085084 1.2:+9018729 None:intergenic
TGACAACGATCAAGCGATTT+TGG 0.146585 1.2:-9019751 MS.gene33193:CDS
GATTCGAATGGCGTCGTAAA+AGG 0.159414 1.2:-9018348 MS.gene33193:CDS
GAAGAACATTACATGGTTTA+AGG 0.171246 1.2:+9019778 None:intergenic
AGAGCTTCTGTTGGATTTAT+TGG 0.180068 1.2:-9018472 MS.gene33193:CDS
ACCTCTGGTTTCCATTGTTC+TGG 0.192206 1.2:+9019639 None:intergenic
CATGGAATTTCAATGTTAAA+TGG 0.209362 1.2:-9020151 MS.gene33193:CDS
GTTAAGCACCATCTTTAAAA+AGG 0.241242 1.2:+9017933 None:intergenic
TGTTCTGGAGCCATGTAATT+AGG 0.250797 1.2:+9019654 None:intergenic
GAGCTTCTGTTGGATTTATT+GGG 0.274049 1.2:-9018471 MS.gene33193:CDS
TGCTGAAGTTTCAAAGGTTC+AGG 0.298858 1.2:+9020367 None:intergenic
TTAGAACGTACTGCAGATTA+TGG 0.302417 1.2:-9018664 MS.gene33193:CDS
GGGCTTAACACATTCTCTTT+TGG 0.303938 1.2:+9018373 None:intergenic
TTTCCAGGGATGGTGAGTTT+TGG 0.309534 1.2:-9018262 MS.gene33193:CDS
ATATTCTGCGCGTCTTTAAA+AGG 0.310548 1.2:-9019389 MS.gene33193:intron
GTCGATGTATGAATTCTTAT+AGG 0.311891 1.2:+9018607 None:intergenic
TGTTTGGTTGTCAAGTTTCC+AGG 0.313479 1.2:-9018277 MS.gene33193:CDS
TAGTCAGTGCTGCCTGATTT+TGG 0.315215 1.2:+9018805 None:intergenic
TTCACATGATCCTCTTTGAT+TGG 0.322968 1.2:+9020241 None:intergenic
TCTGCGTGGGCCAGTTTGTT+AGG 0.324940 1.2:-9018396 MS.gene33193:CDS
CTGCTACTGGTAGGATTTCA+TGG 0.337558 1.2:-9018315 MS.gene33193:CDS
GAGGACCCTTTGGTGATGTT+TGG 0.361104 1.2:-9020333 MS.gene33193:CDS
CCATGGGTTATAATCCTTGT+AGG 0.362031 1.2:+9017992 None:intergenic
TTCTAGAGCTTCACGCTAAA+GGG 0.362481 1.2:-9019815 MS.gene33193:CDS
AAGGAGTTTCTAGTGTTTGC+TGG 0.368878 1.2:-9020177 MS.gene33193:CDS
ACATCTTAGCAGCAACTTCA+TGG 0.384443 1.2:+9020269 None:intergenic
TTGAAACTTCAGCACCGAAT+TGG 0.395091 1.2:-9020358 MS.gene33193:CDS
GAAACGGATTCATGGGGATT+CGG 0.395952 1.2:-9019597 MS.gene33193:CDS
ATTCGAATGGCGTCGTAAAA+GGG 0.398237 1.2:-9018347 MS.gene33193:CDS
CCTCTCAAAGGATCAACTTC+AGG 0.398972 1.2:-9018770 MS.gene33193:CDS
TTGAAACTAGGCATATTAGT+TGG 0.401044 1.2:-9018091 MS.gene33193:CDS
TCGATGTATGAATTCTTATA+GGG 0.403661 1.2:+9018608 None:intergenic
CGAATTGGTCGAGGACCCTT+TGG 0.406343 1.2:-9020343 MS.gene33193:CDS
TCTACCGTCATTGCGATTGA+TGG 0.408374 1.2:+9018492 None:intergenic
ATATTTACAGCTTTGAAACT+AGG 0.412019 1.2:-9018103 MS.gene33193:CDS
TGAAGAGCCAAGCAAAAGAT+TGG 0.413672 1.2:+9019713 None:intergenic
ATGAAAGTAATTCCAAAATC+AGG 0.416519 1.2:-9018817 MS.gene33193:CDS
ATGGCCTGGCAGCTGGTGAT+TGG 0.421439 1.2:-9018567 MS.gene33193:CDS
TTATTGGGCTGCAAACTCTC+TGG 0.426673 1.2:-9018456 MS.gene33193:CDS
AGGGGAGGGGCCTCTGCTAC+TGG 0.429138 1.2:-9018328 MS.gene33193:CDS
TTGACAACCAAACACCCATT+TGG 0.430784 1.2:+9018286 None:intergenic
ATGCCTAGTACAACTAGAAC+AGG 0.431258 1.2:+9018124 None:intergenic
AATCCATGGACTTGCGCGAT+TGG 0.432685 1.2:+9020393 None:intergenic
TGTCATTTGAAACGGATTCA+TGG 0.434134 1.2:-9019605 MS.gene33193:CDS
GGAGGAGGATGGAGATATCA+AGG 0.438936 1.2:-9018844 MS.gene33193:CDS
TGTCCTGTTGGTGAAATATA+CGG 0.443667 1.2:-9019528 MS.gene33193:CDS
GATACTACCAAATGGGTGTT+TGG 0.448805 1.2:-9018293 MS.gene33193:CDS
TTCCCAAAACTCACCATCCC+TGG 0.449001 1.2:+9018259 None:intergenic
GTCATTTGAAACGGATTCAT+GGG 0.449610 1.2:-9019604 MS.gene33193:CDS
ATTCTAGAGCTTCACGCTAA+AGG 0.452406 1.2:-9019816 MS.gene33193:CDS
TTTGAGGAATCGACCTTCAA+TGG 0.455368 1.2:-9019415 MS.gene33193:CDS
GTCACGAATGGCCTGGCAGC+TGG 0.457715 1.2:-9018574 MS.gene33193:CDS
TCTAGTGTTTGCTGGTTACA+TGG 0.459137 1.2:-9020169 MS.gene33193:CDS
TCTCCCATTGAGAATATCCT+TGG 0.462519 1.2:-9019456 MS.gene33193:CDS
CAAAGGGTCCTCGACCAATT+CGG 0.467685 1.2:+9020344 None:intergenic
ATTTCATGGATACTACCAAA+TGG 0.474128 1.2:-9018301 MS.gene33193:CDS
GACATAGGGCCTCTGACCTC+TGG 0.481700 1.2:+9019624 None:intergenic
GGTTGTCAAGTTTCCAGGGA+TGG 0.483297 1.2:-9018272 MS.gene33193:CDS
AAAGGTTCAGGTTCAATCCA+TGG 0.486677 1.2:+9020379 None:intergenic
AGTTGGGAGGCTTTCTGGAT+CGG 0.491406 1.2:+9018734 None:intergenic
AAGCCAACGACAGTTCCGTC+TGG 0.492923 1.2:+9018685 None:intergenic
AGGCCCTATGTCATTTGAAA+CGG 0.494592 1.2:-9019613 MS.gene33193:CDS
GAAGAGCCAAGCAAAAGATT+GGG 0.495194 1.2:+9019714 None:intergenic
AAACCCTTCAGAACTCGAAA+TGG 0.495513 1.2:-9018428 MS.gene33193:CDS
AAATTGTATGACGGTTCAAT+TGG 0.497991 1.2:-9020014 MS.gene33193:CDS
CTGAATGAACTGGCTAATGA+TGG 0.498348 1.2:-9018865 MS.gene33193:CDS
GGTACGCTTGAAAGATGAAA+AGG 0.498765 1.2:-9018545 MS.gene33193:CDS
AGACCTGTTCTAGTTGTACT+AGG 0.500576 1.2:-9018127 MS.gene33193:CDS
TAACCCATGGCAACACAACA+TGG 0.500752 1.2:-9017979 MS.gene33193:CDS
CGACCAATCGCGCAAGTCCA+TGG 0.502376 1.2:-9020396 MS.gene33193:CDS
GATCCGTATATTTCACCAAC+AGG 0.502608 1.2:+9019525 None:intergenic
GAGGGGCCTCTGCTACTGGT+AGG 0.503223 1.2:-9018324 MS.gene33193:CDS
TGGCCTGGCAGCTGGTGATT+GGG 0.503490 1.2:-9018566 MS.gene33193:CDS
ATGGGAGAAGGAAGGCCACT+TGG 0.504464 1.2:+9019471 None:intergenic
AACTTCAACCTCGGAAGGAT+CGG 0.506263 1.2:+9018219 None:intergenic
TGCACCAAGGATATTCTCAA+TGG 0.506987 1.2:+9019452 None:intergenic
CGCAGAATATCTACCATTGA+AGG 0.507993 1.2:+9019402 None:intergenic
GAATTTCAATGTTAAATGGA+AGG 0.512178 1.2:-9020147 MS.gene33193:CDS
CTCAAAGGATCAACTTCAGG+TGG 0.513886 1.2:-9018767 MS.gene33193:CDS
TTATGGATTTGTTCTAGTGA+GGG 0.514209 1.2:-9018647 MS.gene33193:CDS
TCAGATATTGCTCAGAGGCT+TGG 0.514336 1.2:-9019681 MS.gene33193:CDS
GTTTGGTTGTCAAGTTTCCA+GGG 0.514420 1.2:-9018276 MS.gene33193:CDS
ACACATCACCTCAAAACATC+AGG 0.516904 1.2:+9019951 None:intergenic
CATGGACTTGCGCGATTGGT+CGG 0.519277 1.2:+9020397 None:intergenic
ATGGTTTAAGGTTGAGAACA+AGG 0.524109 1.2:+9019790 None:intergenic
AATTTCAATGTTAAATGGAA+GGG 0.525630 1.2:-9020146 MS.gene33193:intron
TTGCAGGTCACTGAATGAAC+TGG 0.528545 1.2:-9018875 MS.gene33193:intron
TCTGCCATTTCGAGTTCTGA+AGG 0.531466 1.2:+9018424 None:intergenic
GTACCCAATCACCAGCTGCC+AGG 0.532200 1.2:+9018563 None:intergenic
TTTCATGGATACTACCAAAT+GGG 0.532985 1.2:-9018300 MS.gene33193:CDS
AGCAAACACTAGAAACTCCT+TGG 0.533146 1.2:+9020179 None:intergenic
TGAACGCGTCACGAATGGCC+TGG 0.537908 1.2:-9018581 MS.gene33193:CDS
CACCGAGTGGTTCCTCTCAA+AGG 0.541938 1.2:-9018782 MS.gene33193:CDS
CCTTGGTATGGATGTCCTGT+TGG 0.543914 1.2:-9019540 MS.gene33193:CDS
ATTATGGATTTGTTCTAGTG+AGG 0.545782 1.2:-9018648 MS.gene33193:CDS
TGGCAGGTATGGGATCGATC+TGG 0.548820 1.2:-9019847 MS.gene33193:intron
ATTCGGTGCTGAAGTTTCAA+AGG 0.549441 1.2:+9020361 None:intergenic
TACGACGCCATTCGAATCGA+GGG 0.550381 1.2:+9018353 None:intergenic
GAATCCGTTTCAAATGACAT+AGG 0.550959 1.2:+9019609 None:intergenic
TCATTGAGAAGAACATTACA+TGG 0.551201 1.2:+9019771 None:intergenic
GCACCAAGGATATTCTCAAT+GGG 0.552742 1.2:+9019453 None:intergenic
TTCGAATGGCGTCGTAAAAG+GGG 0.556323 1.2:-9018346 MS.gene33193:CDS
TAGTTGGAAACAAAGTGAAA+AGG 0.558036 1.2:-9018075 MS.gene33193:CDS
AACATGTTGAGGATCATCAC+TGG 0.559885 1.2:-9018156 MS.gene33193:CDS
AAAATCAACAACTTCAACCT+CGG 0.561609 1.2:+9018210 None:intergenic
ACTGGTAGTCAACCTTGGTA+TGG 0.562801 1.2:-9019552 MS.gene33193:CDS
AAAAGGATATTAGCAACTGA+AGG 0.563136 1.2:+9017950 None:intergenic
TGAGATTTGCATGAGTTGGG+AGG 0.563242 1.2:+9018721 None:intergenic
AACCCATGGCAACACAACAT+GGG 0.563805 1.2:-9017978 MS.gene33193:CDS
CTGCCATTTCGAGTTCTGAA+GGG 0.564065 1.2:+9018425 None:intergenic
AGCCAACGACAGTTCCGTCT+GGG 0.566135 1.2:+9018686 None:intergenic
GGGCTGCAAACTCTCTGGAA+TGG 0.566139 1.2:-9018451 MS.gene33193:CDS
ACTCTTGAACGCGTCACGAA+TGG 0.567776 1.2:-9018586 MS.gene33193:CDS
GTCAAAACAACAGTCCTACA+AGG 0.572453 1.2:-9018006 MS.gene33193:CDS
TGGCTAATGATGGAGGAGGA+TGG 0.574319 1.2:-9018855 MS.gene33193:CDS
ACCCATGGCAACACAACATG+GGG 0.575393 1.2:-9017977 MS.gene33193:CDS
ATTACATGGCTCCAGAACAA+TGG 0.575533 1.2:-9019650 MS.gene33193:CDS
TCAACTTCAGGTGGGTGACA+TGG 0.577067 1.2:-9018758 MS.gene33193:CDS
AGAAAAGTATCAACATGTTG+AGG 0.578832 1.2:-9018167 MS.gene33193:CDS
TGCAAGCCAAACATCACCAA+AGG 0.581260 1.2:+9020327 None:intergenic
AGGATATTCTCAATGGGAGA+AGG 0.581766 1.2:+9019459 None:intergenic
TTTGTTCTAGTGAGGGTCCA+CGG 0.582005 1.2:-9018640 MS.gene33193:CDS
TGGGAATGAATCAAACACCT+TGG 0.582420 1.2:-9018242 MS.gene33193:CDS
TCAACAACTTCAACCTCGGA+AGG 0.582617 1.2:+9018214 None:intergenic
CATTCCATCAATCGCAATGA+CGG 0.585990 1.2:-9018496 MS.gene33193:CDS
TGGGAGAAGGAAGGCCACTT+GGG 0.586231 1.2:+9019472 None:intergenic
CGGTTCAATTGGTGACAAGT+TGG 0.586939 1.2:-9020003 MS.gene33193:CDS
AATCCGTTTCAAATGACATA+GGG 0.587008 1.2:+9019610 None:intergenic
AAGGAAAAGCACTCACCGGT+GGG 0.588053 1.2:-9018526 MS.gene33193:CDS
ACAAAGTGAAAAGGTGCAAG+AGG 0.591652 1.2:-9018066 MS.gene33193:CDS
CACCTTGGCCGATCCTTCCG+AGG 0.592446 1.2:-9018227 MS.gene33193:CDS
AACCTCGGAAGGATCGGCCA+AGG 0.594129 1.2:+9018225 None:intergenic
TGGCTAGACTAAGAGATGGA+TGG 0.594983 1.2:-9019983 MS.gene33193:CDS
GATGTTACATCCAATCAAAG+AGG 0.595757 1.2:-9020251 MS.gene33193:CDS
TTACGACGCCATTCGAATCG+AGG 0.595769 1.2:+9018352 None:intergenic
GCAAGCCAAACATCACCAAA+GGG 0.597883 1.2:+9020328 None:intergenic
TATGGGATCGATCTGGCTCA+AGG 0.601763 1.2:-9019840 MS.gene33193:CDS
GAATTATGCTTGAAGTGCCA+AGG 0.602260 1.2:-9020196 MS.gene33193:CDS
CTTCAGCACCGAATTGGTCG+AGG 0.602330 1.2:-9020352 MS.gene33193:CDS
GCTTGGAAGTCCTAATTACA+TGG 0.604254 1.2:-9019664 MS.gene33193:CDS
ATCATTATGAAATTGTATGA+CGG 0.604681 1.2:-9020023 MS.gene33193:CDS
TGTTGACTGGTAGTCAACCT+TGG 0.606529 1.2:-9019557 MS.gene33193:CDS
ACCGTTGTTGAAATGTTGAC+TGG 0.606786 1.2:-9019570 MS.gene33193:CDS
CCTGAAGTTGATCCTTTGAG+AGG 0.610469 1.2:+9018770 None:intergenic
AATGGCGTCGTAAAAGGGGA+GGG 0.612881 1.2:-9018342 MS.gene33193:CDS
GTCCCAGACGGAACTGTCGT+TGG 0.613432 1.2:-9018688 MS.gene33193:CDS
TGTTAAGCCCTCGATTCGAA+TGG 0.618387 1.2:-9018360 MS.gene33193:CDS
TCATTTGAAACGGATTCATG+GGG 0.622874 1.2:-9019603 MS.gene33193:CDS
TGAAAAGGAAAAGCACTCAC+CGG 0.625000 1.2:-9018530 MS.gene33193:CDS
ATGGCAGAATCATTCTGCGT+GGG 0.627438 1.2:-9018409 MS.gene33193:CDS
AAGTTGGCTAGACTAAGAGA+TGG 0.628842 1.2:-9019987 MS.gene33193:CDS
TGAAATCCTACCAGTAGCAG+AGG 0.629390 1.2:+9018318 None:intergenic
AAAGGAAAAGCACTCACCGG+TGG 0.630780 1.2:-9018527 MS.gene33193:CDS
ATCCTTTGAGAGGAACCACT+CGG 0.632608 1.2:+9018780 None:intergenic
ATGGCGTCGTAAAAGGGGAG+GGG 0.637421 1.2:-9018341 MS.gene33193:CDS
GAATGGCGTCGTAAAAGGGG+AGG 0.641779 1.2:-9018343 MS.gene33193:CDS
TATTCTCAATGGGAGAAGGA+AGG 0.642358 1.2:+9019463 None:intergenic
AATGACGGTAGAGCTTCTGT+TGG 0.643785 1.2:-9018481 MS.gene33193:CDS
CAATGGAAACCAGAGGTCAG+AGG 0.644185 1.2:-9019633 MS.gene33193:CDS
ACATGTTGAGGATCATCACT+GGG 0.644328 1.2:-9018155 MS.gene33193:CDS
TCAAAGGATCAACTTCAGGT+GGG 0.652726 1.2:-9018766 MS.gene33193:CDS
ATGGAATGTAGAATCCCCAC+CGG 0.657028 1.2:+9018511 None:intergenic
GAAAAGCTGCATATCCCAAG+TGG 0.662621 1.2:-9019486 MS.gene33193:CDS
ACCAGTCAACATTTCAACAA+CGG 0.664981 1.2:+9019569 None:intergenic
CCTACAAGGATTATAACCCA+TGG 0.667895 1.2:-9017992 MS.gene33193:CDS
AATGGCAGAATCATTCTGCG+TGG 0.675086 1.2:-9018410 MS.gene33193:CDS
AATGAACTGGCTAATGATGG+AGG 0.681313 1.2:-9018862 MS.gene33193:CDS
CAAAACATGAATGTCCCAGA+CGG 0.682309 1.2:-9018700 MS.gene33193:CDS
CCATGGCAACACAACATGGG+GGG 0.686405 1.2:-9017975 MS.gene33193:CDS
TTAGCTCAGATATTGCTCAG+AGG 0.694542 1.2:-9019686 MS.gene33193:CDS
AGGAAAAGCACTCACCGGTG+GGG 0.698636 1.2:-9018525 MS.gene33193:CDS
GAACTGGCTAATGATGGAGG+AGG 0.699870 1.2:-9018859 MS.gene33193:CDS
TCCAGAACAATGGAAACCAG+AGG 0.702393 1.2:-9019640 MS.gene33193:CDS
CATACTCAAAACATGCACCA+AGG 0.704149 1.2:+9019439 None:intergenic
CCCATGGCAACACAACATGG+GGG 0.707761 1.2:-9017976 MS.gene33193:CDS
TTATAGGGTCATGAATACCG+TGG 0.720576 1.2:+9018623 None:intergenic
CCAACAGGACATCCATACCA+AGG 0.725485 1.2:+9019540 None:intergenic
GCAGCACTGACTACACCGAG+TGG 0.764598 1.2:-9018795 MS.gene33193:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAATGTTAAATGGAA+GGG - chr1.2:9018263-9018282 MS.gene33193:CDS 20.0%
!! ATCATTATGAAATTGTATGA+CGG - chr1.2:9018386-9018405 MS.gene33193:CDS 20.0%
!! ATGCTAAATTAAACAAGAAT+CGG + chr1.2:9019092-9019111 None:intergenic 20.0%
!!! ATCTTTAACTTATATAGCAT+AGG - chr1.2:9018499-9018518 MS.gene33193:CDS 20.0%
!!! TCTTTAACTTATATAGCATA+GGG - chr1.2:9018500-9018519 MS.gene33193:CDS 20.0%
!!! TTCTTTTGATTATGAGATTT+TGG - chr1.2:9017954-9017973 MS.gene33193:CDS 20.0%
! AAAATTACTGGTCAATACTA+AGG - chr1.2:9018523-9018542 MS.gene33193:CDS 25.0%
! ATGAAAGTAATTCCAAAATC+AGG - chr1.2:9019592-9019611 MS.gene33193:CDS 25.0%
! CATGGAATTTCAATGTTAAA+TGG - chr1.2:9018258-9018277 MS.gene33193:CDS 25.0%
! GAATTTCAATGTTAAATGGA+AGG - chr1.2:9018262-9018281 MS.gene33193:CDS 25.0%
! GTGCATTTATTTCAATGTAT+AGG - chr1.2:9018299-9018318 MS.gene33193:CDS 25.0%
! TCGATGTATGAATTCTTATA+GGG + chr1.2:9019804-9019823 None:intergenic 25.0%
! TTTCAATTATCACTTCACAT+TGG - chr1.2:9019123-9019142 MS.gene33193:intron 25.0%
!!! ATATTTACAGCTTTGAAACT+AGG - chr1.2:9020306-9020325 MS.gene33193:CDS 25.0%
!!! CTTATTGATTTAGTTCTTTC+AGG + chr1.2:9019397-9019416 None:intergenic 25.0%
!!! GCTAATATCCTTTTTAAAGA+TGG - chr1.2:9020468-9020487 MS.gene33193:CDS 25.0%
AAAAGGATATTAGCAACTGA+AGG + chr1.2:9020462-9020481 None:intergenic 30.0%
AAAATCAACAACTTCAACCT+CGG + chr1.2:9020202-9020221 None:intergenic 30.0%
AAATTGTATGACGGTTCAAT+TGG - chr1.2:9018395-9018414 MS.gene33193:CDS 30.0%
AATCCGTTTCAAATGACATA+GGG + chr1.2:9018802-9018821 None:intergenic 30.0%
AGCAAAAACCAATATGTTGA+AGG - chr1.2:9020381-9020400 MS.gene33193:CDS 30.0%
ATTCCTGTGATGTATTATCT+TGG - chr1.2:9019325-9019344 MS.gene33193:intron 30.0%
ATTTCATGGATACTACCAAA+TGG - chr1.2:9020108-9020127 MS.gene33193:intron 30.0%
GAAGAACATTACATGGTTTA+AGG + chr1.2:9018634-9018653 None:intergenic 30.0%
GTCGATGTATGAATTCTTAT+AGG + chr1.2:9019805-9019824 None:intergenic 30.0%
TAGCTTGATAGAAGTCAAAA+GGG + chr1.2:9018338-9018357 None:intergenic 30.0%
TAGTTGGAAACAAAGTGAAA+AGG - chr1.2:9020334-9020353 MS.gene33193:CDS 30.0%
TATAGCATAGGGAAAATTAC+TGG - chr1.2:9018511-9018530 MS.gene33193:CDS 30.0%
TCATTGAGAAGAACATTACA+TGG + chr1.2:9018641-9018660 None:intergenic 30.0%
TCGGCATCAGAAAAAAAAAA+TGG + chr1.2:9019073-9019092 None:intergenic 30.0%
TTAAATGGAAGGGTTAGATT+TGG - chr1.2:9018273-9018292 MS.gene33193:CDS 30.0%
TTATGATCATGACCGATTAT+TGG - chr1.2:9019207-9019226 MS.gene33193:intron 30.0%
TTCCTGTGATGTATTATCTT+GGG - chr1.2:9019326-9019345 MS.gene33193:intron 30.0%
TTGAAACTAGGCATATTAGT+TGG - chr1.2:9020318-9020337 MS.gene33193:CDS 30.0%
TTTCATGGATACTACCAAAT+GGG - chr1.2:9020109-9020128 MS.gene33193:intron 30.0%
! ATTATGGATTTGTTCTAGTG+AGG - chr1.2:9019761-9019780 MS.gene33193:CDS 30.0%
! TTAGCTTGATAGAAGTCAAA+AGG + chr1.2:9018339-9018358 None:intergenic 30.0%
! TTATGGATTTGTTCTAGTGA+GGG - chr1.2:9019762-9019781 MS.gene33193:CDS 30.0%
!! AGAAAAGTATCAACATGTTG+AGG - chr1.2:9020242-9020261 MS.gene33193:CDS 30.0%
!! CATGTTTTGAGTATGATTTG+AGG - chr1.2:9018978-9018997 MS.gene33193:intron 30.0%
!! TTGATTTTAACACTTGTCCT+GGG - chr1.2:9020214-9020233 MS.gene33193:CDS 30.0%
!!! TGTTTTGACCTTCAACATAT+TGG + chr1.2:9020392-9020411 None:intergenic 30.0%
!!! TTTTGAGATTTGCATGAGTT+GGG + chr1.2:9019694-9019713 None:intergenic 30.0%
ACCAGTCAACATTTCAACAA+CGG + chr1.2:9018843-9018862 None:intergenic 35.0%
AGAGCTTCTGTTGGATTTAT+TGG - chr1.2:9019937-9019956 MS.gene33193:intron 35.0%
AGGAATACAGCTAATCTAGA+AGG + chr1.2:9019311-9019330 None:intergenic 35.0%
ATATTCTGCGCGTCTTTAAA+AGG - chr1.2:9019020-9019039 MS.gene33193:intron 35.0%
CCTGTGAATATTCCAAGATT+GGG - chr1.2:9019245-9019264 MS.gene33193:intron 35.0%
GAATCCGTTTCAAATGACAT+AGG + chr1.2:9018803-9018822 None:intergenic 35.0%
GAGCTTCTGTTGGATTTATT+GGG - chr1.2:9019938-9019957 MS.gene33193:intron 35.0%
GATGTTACATCCAATCAAAG+AGG - chr1.2:9018158-9018177 MS.gene33193:CDS 35.0%
TCCTGTGAATATTCCAAGAT+TGG - chr1.2:9019244-9019263 MS.gene33193:intron 35.0%
TGAATATTCCAAGATTGGGT+AGG - chr1.2:9019249-9019268 MS.gene33193:intron 35.0%
TTAGAACGTACTGCAGATTA+TGG - chr1.2:9019745-9019764 MS.gene33193:CDS 35.0%
TTCACATGATCCTCTTTGAT+TGG + chr1.2:9018171-9018190 None:intergenic 35.0%
TTCCCAAGATAATACATCAC+AGG + chr1.2:9019331-9019350 None:intergenic 35.0%
! ATGGTTTAAGGTTGAGAACA+AGG + chr1.2:9018622-9018641 None:intergenic 35.0%
! GTCATTTGAAACGGATTCAT+GGG - chr1.2:9018805-9018824 MS.gene33193:CDS 35.0%
! TCATTTGAAACGGATTCATG+GGG - chr1.2:9018806-9018825 MS.gene33193:CDS 35.0%
! TCTCATTACCTGATGTTTTG+AGG - chr1.2:9018450-9018469 MS.gene33193:CDS 35.0%
! TGTCATTTGAAACGGATTCA+TGG - chr1.2:9018804-9018823 MS.gene33193:CDS 35.0%
! TGTCCTGTTGGTGAAATATA+CGG - chr1.2:9018881-9018900 MS.gene33193:intron 35.0%
!! GTTGATTTTAACACTTGTCC+TGG - chr1.2:9020213-9020232 MS.gene33193:CDS 35.0%
!!! CTTGGGAAGTGTTTACATTT+TGG - chr1.2:9019343-9019362 MS.gene33193:intron 35.0%
!!! GTTTTGAGATTTGCATGAGT+TGG + chr1.2:9019695-9019714 None:intergenic 35.0%
AAACCCTTCAGAACTCGAAA+TGG - chr1.2:9019981-9020000 MS.gene33193:CDS 40.0%
AACATGTTGAGGATCATCAC+TGG - chr1.2:9020253-9020272 MS.gene33193:CDS 40.0%
AAGTTGGCTAGACTAAGAGA+TGG - chr1.2:9018422-9018441 MS.gene33193:CDS 40.0%
AATATTCACAGGACAGGTAC+AGG + chr1.2:9019237-9019256 None:intergenic 40.0%
AATGAACTGGCTAATGATGG+AGG - chr1.2:9019547-9019566 MS.gene33193:CDS 40.0%
ACACATCACCTCAAAACATC+AGG + chr1.2:9018461-9018480 None:intergenic 40.0%
ACATCTTAGCAGCAACTTCA+TGG + chr1.2:9018143-9018162 None:intergenic 40.0%
ACATGTTGAGGATCATCACT+GGG - chr1.2:9020254-9020273 MS.gene33193:CDS 40.0%
ACCGTTGTTGAAATGTTGAC+TGG - chr1.2:9018839-9018858 MS.gene33193:CDS 40.0%
AGCAAACACTAGAAACTCCT+TGG + chr1.2:9018233-9018252 None:intergenic 40.0%
AGGATATTCTCAATGGGAGA+AGG + chr1.2:9018953-9018972 None:intergenic 40.0%
ATGCCTAGTACAACTAGAAC+AGG + chr1.2:9020288-9020307 None:intergenic 40.0%
ATTACATGGCTCCAGAACAA+TGG - chr1.2:9018759-9018778 MS.gene33193:CDS 40.0%
ATTCATTCTGCCTATGTTGC+AGG - chr1.2:9019518-9019537 MS.gene33193:CDS 40.0%
ATTCGAATGGCGTCGTAAAA+GGG - chr1.2:9020062-9020081 MS.gene33193:intron 40.0%
CAAAACATGAATGTCCCAGA+CGG - chr1.2:9019709-9019728 MS.gene33193:CDS 40.0%
CATACTCAAAACATGCACCA+AGG + chr1.2:9018973-9018992 None:intergenic 40.0%
CATTCCATCAATCGCAATGA+CGG - chr1.2:9019913-9019932 MS.gene33193:intron 40.0%
CCCAATCTTGGAATATTCAC+AGG + chr1.2:9019248-9019267 None:intergenic 40.0%
CCTACAAGGATTATAACCCA+TGG - chr1.2:9020417-9020436 MS.gene33193:CDS 40.0%
CGCAGAATATCTACCATTGA+AGG + chr1.2:9019010-9019029 None:intergenic 40.0%
CTGAATGAACTGGCTAATGA+TGG - chr1.2:9019544-9019563 MS.gene33193:CDS 40.0%
GAAGAGCCAAGCAAAAGATT+GGG + chr1.2:9018698-9018717 None:intergenic 40.0%
GATACTACCAAATGGGTGTT+TGG - chr1.2:9020116-9020135 MS.gene33193:intron 40.0%
GATCCGTATATTTCACCAAC+AGG + chr1.2:9018887-9018906 None:intergenic 40.0%
GCACCAAGGATATTCTCAAT+GGG + chr1.2:9018959-9018978 None:intergenic 40.0%
GCTTGGAAGTCCTAATTACA+TGG - chr1.2:9018745-9018764 MS.gene33193:CDS 40.0%
GGTACAGGTTCACCAATAAT+CGG + chr1.2:9019222-9019241 None:intergenic 40.0%
GGTACGCTTGAAAGATGAAA+AGG - chr1.2:9019864-9019883 MS.gene33193:intron 40.0%
GGTCAATACTAAGGATGTGT+TGG - chr1.2:9018532-9018551 MS.gene33193:CDS 40.0%
GTCAAAACAACAGTCCTACA+AGG - chr1.2:9020403-9020422 MS.gene33193:CDS 40.0%
GTTTGGTTGTCAAGTTTCCA+GGG - chr1.2:9020133-9020152 MS.gene33193:intron 40.0%
TATTCTCAATGGGAGAAGGA+AGG + chr1.2:9018949-9018968 None:intergenic 40.0%
TCAAAGGATCAACTTCAGGT+GGG - chr1.2:9019643-9019662 MS.gene33193:CDS 40.0%
TCTCCCATTGAGAATATCCT+TGG - chr1.2:9018953-9018972 MS.gene33193:intron 40.0%
TCTTGGAATATTCACAGGAC+AGG + chr1.2:9019243-9019262 None:intergenic 40.0%
TGAAGAGCCAAGCAAAAGAT+TGG + chr1.2:9018699-9018718 None:intergenic 40.0%
TGCACCAAGGATATTCTCAA+TGG + chr1.2:9018960-9018979 None:intergenic 40.0%
TGCTGAAGTTTCAAAGGTTC+AGG + chr1.2:9018045-9018064 None:intergenic 40.0%
TGGGAATGAATCAAACACCT+TGG - chr1.2:9020167-9020186 MS.gene33193:CDS 40.0%
TGTTTGGTTGTCAAGTTTCC+AGG - chr1.2:9020132-9020151 MS.gene33193:intron 40.0%
TTAGCTCAGATATTGCTCAG+AGG - chr1.2:9018723-9018742 MS.gene33193:CDS 40.0%
TTATAGGGTCATGAATACCG+TGG + chr1.2:9019789-9019808 None:intergenic 40.0%
TTCAGGTACAGACATTATCC+TGG + chr1.2:9019380-9019399 None:intergenic 40.0%
TTGACAACCAAACACCCATT+TGG + chr1.2:9020126-9020145 None:intergenic 40.0%
TTTGAGGAATCGACCTTCAA+TGG - chr1.2:9018994-9019013 MS.gene33193:intron 40.0%
! AAAGGTTCAGGTTCAATCCA+TGG + chr1.2:9018033-9018052 None:intergenic 40.0%
! AAGGATGTGTTGGTCGTTAA+TGG - chr1.2:9018542-9018561 MS.gene33193:CDS 40.0%
! ACAAAGTGAAAAGGTGCAAG+AGG - chr1.2:9020343-9020362 MS.gene33193:CDS 40.0%
! AGACCTGTTCTAGTTGTACT+AGG - chr1.2:9020282-9020301 MS.gene33193:CDS 40.0%
! AGGCCCTATGTCATTTGAAA+CGG - chr1.2:9018796-9018815 MS.gene33193:CDS 40.0%
! CCATGGGTTATAATCCTTGT+AGG + chr1.2:9020420-9020439 None:intergenic 40.0%
! GAATTATGCTTGAAGTGCCA+AGG - chr1.2:9018213-9018232 MS.gene33193:CDS 40.0%
! GACAACGATCAAGCGATTTT+GGG - chr1.2:9018659-9018678 MS.gene33193:CDS 40.0%
! GGGCTTAACACATTCTCTTT+TGG + chr1.2:9020039-9020058 None:intergenic 40.0%
! GGTATTCCCAATCTTTTGCT+TGG - chr1.2:9018689-9018708 MS.gene33193:CDS 40.0%
! TCTAGTGTTTGCTGGTTACA+TGG - chr1.2:9018240-9018259 MS.gene33193:CDS 40.0%
! TCTCTTTTGGCCTAACAAAC+TGG + chr1.2:9020026-9020045 None:intergenic 40.0%
! TGACAACGATCAAGCGATTT+TGG - chr1.2:9018658-9018677 MS.gene33193:CDS 40.0%
! TGATACTTTTCTACCATCCC+AGG + chr1.2:9020234-9020253 None:intergenic 40.0%
! TTGAAACTTCAGCACCGAAT+TGG - chr1.2:9018051-9018070 MS.gene33193:CDS 40.0%
! TTTTAACACTTGTCCTGGGA+TGG - chr1.2:9020218-9020237 MS.gene33193:CDS 40.0%
!! AAGGAGTTTCTAGTGTTTGC+TGG - chr1.2:9018232-9018251 MS.gene33193:CDS 40.0%
!! ATTCGGTGCTGAAGTTTCAA+AGG + chr1.2:9018051-9018070 None:intergenic 40.0%
!! ATTCTAGAGCTTCACGCTAA+AGG - chr1.2:9018593-9018612 MS.gene33193:CDS 40.0%
!! TGAAAAGGAAAAGCACTCAC+CGG - chr1.2:9019879-9019898 MS.gene33193:intron 40.0%
!! TGTTCTGGAGCCATGTAATT+AGG + chr1.2:9018758-9018777 None:intergenic 40.0%
!! TTCTAGAGCTTCACGCTAAA+GGG - chr1.2:9018594-9018613 MS.gene33193:CDS 40.0%
AACCCATGGCAACACAACAT+GGG - chr1.2:9020431-9020450 MS.gene33193:CDS 45.0%
AACTTCAACCTCGGAAGGAT+CGG + chr1.2:9020193-9020212 None:intergenic 45.0%
AATGACGGTAGAGCTTCTGT+TGG - chr1.2:9019928-9019947 MS.gene33193:intron 45.0%
AATGGCAGAATCATTCTGCG+TGG - chr1.2:9019999-9020018 MS.gene33193:CDS 45.0%
ACAACAGACCTACCCAATCT+TGG + chr1.2:9019260-9019279 None:intergenic 45.0%
ACTGGTAGTCAACCTTGGTA+TGG - chr1.2:9018857-9018876 MS.gene33193:CDS 45.0%
AGATTGGGTAGGTCTGTTGT+AGG - chr1.2:9019260-9019279 MS.gene33193:intron 45.0%
ATGGAATGTAGAATCCCCAC+CGG + chr1.2:9019901-9019920 None:intergenic 45.0%
ATGGCAGAATCATTCTGCGT+GGG - chr1.2:9020000-9020019 MS.gene33193:CDS 45.0%
CAGACATTATCCTGGATCAG+AGG + chr1.2:9019372-9019391 None:intergenic 45.0%
CATTCAGTGACCTGCAACAT+AGG + chr1.2:9019531-9019550 None:intergenic 45.0%
CCTCTCAAAGGATCAACTTC+AGG - chr1.2:9019639-9019658 MS.gene33193:CDS 45.0%
CTCAAAGGATCAACTTCAGG+TGG - chr1.2:9019642-9019661 MS.gene33193:CDS 45.0%
CTGCTACTGGTAGGATTTCA+TGG - chr1.2:9020094-9020113 MS.gene33193:intron 45.0%
GAAAAGCTGCATATCCCAAG+TGG - chr1.2:9018923-9018942 MS.gene33193:intron 45.0%
GATTCGAATGGCGTCGTAAA+AGG - chr1.2:9020061-9020080 MS.gene33193:intron 45.0%
GCAAGCCAAACATCACCAAA+GGG + chr1.2:9018084-9018103 None:intergenic 45.0%
TAACCCATGGCAACACAACA+TGG - chr1.2:9020430-9020449 MS.gene33193:CDS 45.0%
TCAACAACTTCAACCTCGGA+AGG + chr1.2:9020198-9020217 None:intergenic 45.0%
TCAGATATTGCTCAGAGGCT+TGG - chr1.2:9018728-9018747 MS.gene33193:CDS 45.0%
TCCAGAACAATGGAAACCAG+AGG - chr1.2:9018769-9018788 MS.gene33193:CDS 45.0%
TCTACCGTCATTGCGATTGA+TGG + chr1.2:9019920-9019939 None:intergenic 45.0%
TGAAATCCTACCAGTAGCAG+AGG + chr1.2:9020094-9020113 None:intergenic 45.0%
TGCAAGCCAAACATCACCAA+AGG + chr1.2:9018085-9018104 None:intergenic 45.0%
TGGCTAGACTAAGAGATGGA+TGG - chr1.2:9018426-9018445 MS.gene33193:CDS 45.0%
TGGTCGTTAATGGCAGGTAT+GGG - chr1.2:9018552-9018571 MS.gene33193:CDS 45.0%
TGTTGTAGGACTAGAGCTCA+AGG - chr1.2:9019274-9019293 MS.gene33193:intron 45.0%
TTATTGGGCTGCAAACTCTC+TGG - chr1.2:9019953-9019972 MS.gene33193:intron 45.0%
TTCGAATGGCGTCGTAAAAG+GGG - chr1.2:9020063-9020082 MS.gene33193:intron 45.0%
TTGCAGGTCACTGAATGAAC+TGG - chr1.2:9019534-9019553 MS.gene33193:CDS 45.0%
TTGGTCGTTAATGGCAGGTA+TGG - chr1.2:9018551-9018570 MS.gene33193:CDS 45.0%
TTTGTTCTAGTGAGGGTCCA+CGG - chr1.2:9019769-9019788 MS.gene33193:CDS 45.0%
! ACCTCTGGTTTCCATTGTTC+TGG + chr1.2:9018773-9018792 None:intergenic 45.0%
! ATCCTTTGAGAGGAACCACT+CGG + chr1.2:9019632-9019651 None:intergenic 45.0%
! ATGTGTTGGTCGTTAATGGC+AGG - chr1.2:9018546-9018565 MS.gene33193:CDS 45.0%
! CCTGAAGTTGATCCTTTGAG+AGG + chr1.2:9019642-9019661 None:intergenic 45.0%
! CGGTTCAATTGGTGACAAGT+TGG - chr1.2:9018406-9018425 MS.gene33193:CDS 45.0%
! GAAACGGATTCATGGGGATT+CGG - chr1.2:9018812-9018831 MS.gene33193:CDS 45.0%
! TAGTCAGTGCTGCCTGATTT+TGG + chr1.2:9019607-9019626 None:intergenic 45.0%
! TCGGAACAGCAGCAGTTTTA+GGG + chr1.2:9017996-9018015 None:intergenic 45.0%
! TGAGATTTGCATGAGTTGGG+AGG + chr1.2:9019691-9019710 None:intergenic 45.0%
! TGTTAAGCCCTCGATTCGAA+TGG - chr1.2:9020049-9020068 MS.gene33193:intron 45.0%
! TGTTGACTGGTAGTCAACCT+TGG - chr1.2:9018852-9018871 MS.gene33193:CDS 45.0%
! TTCCAGGGATGGTGAGTTTT+GGG - chr1.2:9020148-9020167 MS.gene33193:CDS 45.0%
! TTTCCAGGGATGGTGAGTTT+TGG - chr1.2:9020147-9020166 MS.gene33193:CDS 45.0%
!! CTGCCATTTCGAGTTCTGAA+GGG + chr1.2:9019987-9020006 None:intergenic 45.0%
!! TCTGCCATTTCGAGTTCTGA+AGG + chr1.2:9019988-9020007 None:intergenic 45.0%
!!! ATTTTGGCTTCCTCTGATCC+AGG - chr1.2:9019359-9019378 MS.gene33193:intron 45.0%
AAGCTGTTTGTGCACGAGCA+TGG - chr1.2:9019421-9019440 MS.gene33193:CDS 50.0%
AATCCATGGACTTGCGCGAT+TGG + chr1.2:9018019-9018038 None:intergenic 50.0%
AATGGCGTCGTAAAAGGGGA+GGG - chr1.2:9020067-9020086 MS.gene33193:intron 50.0%
ACCCATGGCAACACAACATG+GGG - chr1.2:9020432-9020451 MS.gene33193:CDS 50.0%
ACTCTTGAACGCGTCACGAA+TGG - chr1.2:9019823-9019842 MS.gene33193:CDS 50.0%
AGTTGGGAGGCTTTCTGGAT+CGG + chr1.2:9019678-9019697 None:intergenic 50.0%
CAAAGGGTCCTCGACCAATT+CGG + chr1.2:9018068-9018087 None:intergenic 50.0%
CAATGGAAACCAGAGGTCAG+AGG - chr1.2:9018776-9018795 MS.gene33193:CDS 50.0%
CCAACAGGACATCCATACCA+AGG + chr1.2:9018872-9018891 None:intergenic 50.0%
CCTTGGTATGGATGTCCTGT+TGG - chr1.2:9018869-9018888 MS.gene33193:CDS 50.0%
GGAGGAGGATGGAGATATCA+AGG - chr1.2:9019565-9019584 MS.gene33193:CDS 50.0%
GGTTGTCAAGTTTCCAGGGA+TGG - chr1.2:9020137-9020156 MS.gene33193:intron 50.0%
TACGACGCCATTCGAATCGA+GGG + chr1.2:9020059-9020078 None:intergenic 50.0%
TCAACTTCAGGTGGGTGACA+TGG - chr1.2:9019651-9019670 MS.gene33193:CDS 50.0%
TTACGACGCCATTCGAATCG+AGG + chr1.2:9020060-9020079 None:intergenic 50.0%
TTCCCAAAACTCACCATCCC+TGG + chr1.2:9020153-9020172 None:intergenic 50.0%
! GAACTGGCTAATGATGGAGG+AGG - chr1.2:9019550-9019569 MS.gene33193:CDS 50.0%
! GTCGGAACAGCAGCAGTTTT+AGG + chr1.2:9017997-9018016 None:intergenic 50.0%
! TATGGGATCGATCTGGCTCA+AGG - chr1.2:9018569-9018588 MS.gene33193:CDS 50.0%
! TGGCTAATGATGGAGGAGGA+TGG - chr1.2:9019554-9019573 MS.gene33193:CDS 50.0%
!! AAAGGAAAAGCACTCACCGG+TGG - chr1.2:9019882-9019901 MS.gene33193:intron 50.0%
!! AAGGAAAAGCACTCACCGGT+GGG - chr1.2:9019883-9019902 MS.gene33193:intron 50.0%
!! CAAGCGATTTTGGGAGACGT+TGG - chr1.2:9018668-9018687 MS.gene33193:CDS 50.0%
!! GAGGACCCTTTGGTGATGTT+TGG - chr1.2:9018076-9018095 MS.gene33193:CDS 50.0%
!!! AGCAGCAGTTTTAGGGACGT+CGG + chr1.2:9017989-9018008 None:intergenic 50.0%
AAGCCAACGACAGTTCCGTC+TGG + chr1.2:9019727-9019746 None:intergenic 55.0%
AGCCAACGACAGTTCCGTCT+GGG + chr1.2:9019726-9019745 None:intergenic 55.0%
ATGGCGTCGTAAAAGGGGAG+GGG - chr1.2:9020068-9020087 MS.gene33193:intron 55.0%
ATGGGAGAAGGAAGGCCACT+TGG + chr1.2:9018941-9018960 None:intergenic 55.0%
CACCGAGTGGTTCCTCTCAA+AGG - chr1.2:9019627-9019646 MS.gene33193:CDS 55.0%
CATGGACTTGCGCGATTGGT+CGG + chr1.2:9018015-9018034 None:intergenic 55.0%
CCATGGCAACACAACATGGG+GGG - chr1.2:9020434-9020453 MS.gene33193:CDS 55.0%
CCCATGGCAACACAACATGG+GGG - chr1.2:9020433-9020452 MS.gene33193:CDS 55.0%
CCCCCATGTTGTGTTGCCAT+GGG + chr1.2:9020436-9020455 None:intergenic 55.0%
CGAATTGGTCGAGGACCCTT+TGG - chr1.2:9018066-9018085 MS.gene33193:CDS 55.0%
GAATGGCGTCGTAAAAGGGG+AGG - chr1.2:9020066-9020085 MS.gene33193:intron 55.0%
TGGCAGGTATGGGATCGATC+TGG - chr1.2:9018562-9018581 MS.gene33193:CDS 55.0%
TGGGAGAAGGAAGGCCACTT+GGG + chr1.2:9018940-9018959 None:intergenic 55.0%
! CTTCAGCACCGAATTGGTCG+AGG - chr1.2:9018057-9018076 MS.gene33193:CDS 55.0%
! GCATGAGTTGGGAGGCTTTC+TGG + chr1.2:9019683-9019702 None:intergenic 55.0%
! GGGCTGCAAACTCTCTGGAA+TGG - chr1.2:9019958-9019977 MS.gene33193:intron 55.0%
! TCTGCGTGGGCCAGTTTGTT+AGG - chr1.2:9020013-9020032 MS.gene33193:CDS 55.0%
!! AGGAAAAGCACTCACCGGTG+GGG - chr1.2:9019884-9019903 MS.gene33193:intron 55.0%
AACCTCGGAAGGATCGGCCA+AGG + chr1.2:9020187-9020206 None:intergenic 60.0%
ATGGCCTGGCAGCTGGTGAT+TGG - chr1.2:9019842-9019861 MS.gene33193:CDS 60.0%
CCCCCCATGTTGTGTTGCCA+TGG + chr1.2:9020437-9020456 None:intergenic 60.0%
CGACCAATCGCGCAAGTCCA+TGG - chr1.2:9018013-9018032 MS.gene33193:CDS 60.0%
GACATAGGGCCTCTGACCTC+TGG + chr1.2:9018788-9018807 None:intergenic 60.0%
GTACCCAATCACCAGCTGCC+AGG + chr1.2:9019849-9019868 None:intergenic 60.0%
GTCCCAGACGGAACTGTCGT+TGG - chr1.2:9019721-9019740 MS.gene33193:CDS 60.0%
TGAACGCGTCACGAATGGCC+TGG - chr1.2:9019828-9019847 MS.gene33193:CDS 60.0%
TGGCCTGGCAGCTGGTGATT+GGG - chr1.2:9019843-9019862 MS.gene33193:CDS 60.0%
!! GCAGCACTGACTACACCGAG+TGG - chr1.2:9019614-9019633 MS.gene33193:CDS 60.0%
CACCTTGGCCGATCCTTCCG+AGG - chr1.2:9020182-9020201 MS.gene33193:CDS 65.0%
GAGGGGCCTCTGCTACTGGT+AGG - chr1.2:9020085-9020104 MS.gene33193:intron 65.0%
GTCACGAATGGCCTGGCAGC+TGG - chr1.2:9019835-9019854 MS.gene33193:CDS 65.0%
AGGGGAGGGGCCTCTGCTAC+TGG - chr1.2:9020081-9020100 MS.gene33193:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 9017934 9020497 9017934 ID=MS.gene33193
chr1.2 mRNA 9017934 9020497 9017934 ID=MS.gene33193.t1;Parent=MS.gene33193
chr1.2 exon 9020147 9020497 9020147 ID=MS.gene33193.t1.exon1;Parent=MS.gene33193.t1
chr1.2 CDS 9020147 9020497 9020147 ID=cds.MS.gene33193.t1;Parent=MS.gene33193.t1
chr1.2 exon 9019960 9020051 9019960 ID=MS.gene33193.t1.exon2;Parent=MS.gene33193.t1
chr1.2 CDS 9019960 9020051 9019960 ID=cds.MS.gene33193.t1;Parent=MS.gene33193.t1
chr1.2 exon 9019390 9019863 9019390 ID=MS.gene33193.t1.exon3;Parent=MS.gene33193.t1
chr1.2 CDS 9019390 9019863 9019390 ID=cds.MS.gene33193.t1;Parent=MS.gene33193.t1
chr1.2 exon 9017934 9018891 9017934 ID=MS.gene33193.t1.exon4;Parent=MS.gene33193.t1
chr1.2 CDS 9017934 9018891 9017934 ID=cds.MS.gene33193.t1;Parent=MS.gene33193.t1
Gene Sequence

>MS.gene33193

ATGGCTTCTTCATCAGCTGCTTCTTTTGATTATGAGATTTTGGATAAAGATACCGACGTCCCTAAAACTGCTGCTGTTCCGACCAATCGCGCAAGTCCATGGATTGAACCTGAACCTTTGAAACTTCAGCACCGAATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGAAGATTATGATGAGCACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATCATGTGAAGATTGTATTGAAGAAATTCAATGAATTATGCTTGAAGTGCCAAGGAGTTTCTAGTGTTTGCTGGTTACATGGAATTTCAATGTTAAATGGAAGGGTTAGATTTGGACTGTGCATTTATTTCAATGTATAGGATATTGTTTGCTACCCTTTTGACTTCTATCAAGCTAACACATTTGTTTGTATTCACAGATCTGCATCATTATGAAATTGTATGACGGTTCAATTGGTGACAAGTTGGCTAGACTAAGAGATGGATGGATCTCATTACCTGATGTTTTGAGGTGATGTGTTTTCAGAAAAACATGCTTATCTTTAACTTATATAGCATAGGGAAAATTACTGGTCAATACTAAGGATGTGTTGGTCGTTAATGGCAGGTATGGGATCGATCTGGCTCAAGGCATTCTAGAGCTTCACGCTAAAGGGATCCTTGTTCTCAACCTTAAACCATGTAATGTTCTTCTCAATGACAACGATCAAGCGATTTTGGGAGACGTTGGTATTCCCAATCTTTTGCTTGGCTCTTCATTCGTTAGCTCAGATATTGCTCAGAGGCTTGGAAGTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAGGTCAGAGGCCCTATGTCATTTGAAACGGATTCATGGGGATTCGGATGCACCGTTGTTGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTGGTGAAATATACGGATCAGTTGTCGAAAAGCATGAAAAGCTGCATATCCCAAGTGGCCTTCCTTCTCCCATTGAGAATATCCTTGGTGCATGTTTTGAGTATGATTTGAGGAATCGACCTTCAATGGTAGATATTCTGCGCGTCTTTAAAAGGTTTGTATGCAGATGTATCAATCTGAAGCCATTTTTTTTTTCTGATGCCGATTCTTGTTTAATTTAGCATGTAGTTTCAATTTTCAATTATCACTTCACATTGGAGAAAAATACTTCACATGAAAGCTTCTTAGATTCTTTAAAAGAAATTTCTGTAGTAATGAGTTATGATCATGACCGATTATTGGTGAACCTGTACCTGTCCTGTGAATATTCCAAGATTGGGTAGGTCTGTTGTAGGACTAGAGCTCAAGGTTAAATGAAAGCCTTCTAGATTAGCTGTATTCCTGTGATGTATTATCTTGGGAAGTGTTTACATTTTGGCTTCCTCTGATCCAGGATAATGTCTGTACCTGAAAGAACTAAATCAATAAGCATGAAGCTGTTTGTGCACGAGCATGGTTATCTTTTTAGTTAATATCTATTTATCTTCATGCAGATAAGAAATAATTTATGTTGAATATTACTTTATTCTTATTCATTCTGCCTATGTTGCAGGTCACTGAATGAACTGGCTAATGATGGAGGAGGATGGAGATATCAAGGAAACATGAAAGTAATTCCAAAATCAGGCAGCACTGACTACACCGAGTGGTTCCTCTCAAAGGATCAACTTCAGGTGGGTGACATGGTCCGATCCAGAAAGCCTCCCAACTCATGCAAATCTCAAAACATGAATGTCCCAGACGGAACTGTCGTTGGCTTAGAACGTACTGCAGATTATGGATTTGTTCTAGTGAGGGTCCACGGTATTCATGACCCTATAAGAATTCATACATCGACTCTTGAACGCGTCACGAATGGCCTGGCAGCTGGTGATTGGGTACGCTTGAAAGATGAAAAGGAAAAGCACTCACCGGTGGGGATTCTACATTCCATCAATCGCAATGACGGTAGAGCTTCTGTTGGATTTATTGGGCTGCAAACTCTCTGGAATGGAAACCCTTCAGAACTCGAAATGGCAGAATCATTCTGCGTGGGCCAGTTTGTTAGGCCAAAAGAGAATGTGTTAAGCCCTCGATTCGAATGGCGTCGTAAAAGGGGAGGGGCCTCTGCTACTGGTAGGATTTCATGGATACTACCAAATGGGTGTTTGGTTGTCAAGTTTCCAGGGATGGTGAGTTTTGGGAATGAATCAAACACCTTGGCCGATCCTTCCGAGGTTGAAGTTGTTGATTTTAACACTTGTCCTGGGATGGTAGAAAAGTATCAACATGTTGAGGATCATCACTGGGCTGTAAGACCTGTTCTAGTTGTACTAGGCATATTTACAGCTTTGAAACTAGGCATATTAGTTGGAAACAAAGTGAAAAGGTGCAAGAGGTTCAATGCAAAAGAAAGCAAAAACCAATATGTTGAAGGTCAAAACAACAGTCCTACAAGGATTATAACCCATGGCAACACAACATGGGGGGTTCCTTCAGTTGCTAATATCCTTTTTAAAGATGGTGCTTAA
Protein sequence

>MS.gene33193.t1

MASSSAASFDYEILDKDTDVPKTAAVPTNRASPWIEPEPLKLQHRIGRGPFGDVWLATLHQSTEDYDEHHEVAAKMLHPIKEDHVKIVLKKFNELCLKCQGVSSVCWLHGISMLNGRICIIMKLYDGSIGDKLARLRDGWISLPDVLRYGIDLAQGILELHAKGILVLNLKPCNVLLNDNDQAILGDVGIPNLLLGSSFVSSDIAQRLGSPNYMAPEQWKPEVRGPMSFETDSWGFGCTVVEMLTGSQPWYGCPVGEIYGSVVEKHEKLHIPSGLPSPIENILGACFEYDLRNRPSMVDILRVFKRSLNELANDGGGWRYQGNMKVIPKSGSTDYTEWFLSKDQLQVGDMVRSRKPPNSCKSQNMNVPDGTVVGLERTADYGFVLVRVHGIHDPIRIHTSTLERVTNGLAAGDWVRLKDEKEKHSPVGILHSINRNDGRASVGFIGLQTLWNGNPSELEMAESFCVGQFVRPKENVLSPRFEWRRKRGGASATGRISWILPNGCLVVKFPGMVSFGNESNTLADPSEVEVVDFNTCPGMVEKYQHVEDHHWAVRPVLVVLGIFTALKLGILVGNKVKRCKRFNAKESKNQYVEGQNNSPTRIITHGNTTWGVPSVANILFKDGA