Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33216.t1 | PNX71799.1 | 81.9 | 331 | 59 | 1 | 218 | 548 | 140 | 469 | 1.70E-147 | 533.9 |
MS.gene33216.t1 | PNX71799.1 | 72.6 | 73 | 20 | 0 | 947 | 1019 | 489 | 561 | 3.60E-17 | 100.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33216.t1 | Q9SZL8 | 22.8 | 602 | 273 | 6 | 19 | 429 | 40 | 640 | 2.2e-39 | 166.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33216.t1 | A0A2K3KZX1 | 81.9 | 331 | 59 | 1 | 218 | 548 | 140 | 469 | 1.2e-147 | 533.9 |
MS.gene33216.t1 | A0A2K3KZX1 | 72.6 | 73 | 20 | 0 | 947 | 1019 | 489 | 561 | 2.6e-17 | 100.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene33216.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33216.t1 | MTR_0402s0040 | 29.933 | 451 | 226 | 12 | 45 | 489 | 25 | 391 | 3.37e-50 | 186 |
MS.gene33216.t1 | MTR_7g074790 | 34.857 | 175 | 90 | 4 | 42 | 213 | 6 | 159 | 1.32e-24 | 103 |
MS.gene33216.t1 | MTR_4g067290 | 35.714 | 168 | 89 | 6 | 46 | 201 | 56 | 216 | 3.89e-20 | 91.3 |
MS.gene33216.t1 | MTR_4g067290 | 35.714 | 168 | 89 | 6 | 46 | 201 | 76 | 236 | 4.56e-20 | 91.7 |
MS.gene33216.t1 | MTR_4g067290 | 35.714 | 168 | 89 | 6 | 46 | 201 | 116 | 276 | 1.00e-19 | 91.3 |
MS.gene33216.t1 | MTR_5g039760 | 34.503 | 171 | 83 | 3 | 48 | 215 | 12 | 156 | 1.17e-19 | 88.6 |
MS.gene33216.t1 | MTR_4g067290 | 34.940 | 166 | 91 | 6 | 46 | 201 | 56 | 214 | 2.48e-19 | 88.6 |
MS.gene33216.t1 | MTR_2g070590 | 44.762 | 105 | 54 | 4 | 45 | 146 | 16 | 119 | 2.78e-19 | 85.1 |
MS.gene33216.t1 | MTR_4g067290 | 34.940 | 166 | 91 | 6 | 46 | 201 | 76 | 234 | 3.05e-19 | 89.0 |
MS.gene33216.t1 | MTR_4g067290 | 34.940 | 166 | 91 | 6 | 46 | 201 | 74 | 232 | 3.11e-19 | 89.0 |
MS.gene33216.t1 | MTR_5g015480 | 39.394 | 165 | 81 | 8 | 14 | 165 | 19 | 177 | 4.55e-19 | 88.6 |
MS.gene33216.t1 | MTR_6g017200 | 44.330 | 97 | 50 | 3 | 45 | 138 | 57 | 152 | 4.66e-18 | 82.8 |
MS.gene33216.t1 | MTR_2g098880 | 37.097 | 124 | 64 | 5 | 35 | 149 | 49 | 167 | 1.23e-16 | 81.3 |
MS.gene33216.t1 | MTR_1g057920 | 42.453 | 106 | 52 | 5 | 34 | 133 | 21 | 123 | 1.38e-16 | 77.4 |
MS.gene33216.t1 | MTR_2g098880 | 37.097 | 124 | 64 | 5 | 35 | 149 | 61 | 179 | 1.64e-16 | 81.3 |
MS.gene33216.t1 | MTR_2g098920 | 41.748 | 103 | 56 | 3 | 46 | 146 | 80 | 180 | 1.96e-16 | 80.9 |
MS.gene33216.t1 | MTR_4g102720 | 29.885 | 174 | 84 | 4 | 41 | 212 | 2 | 139 | 8.30e-16 | 78.2 |
MS.gene33216.t1 | MTR_7g061980 | 35.345 | 116 | 69 | 3 | 43 | 155 | 7 | 119 | 1.38e-15 | 74.3 |
MS.gene33216.t1 | MTR_6g051425 | 27.692 | 195 | 134 | 2 | 47 | 236 | 18 | 210 | 2.11e-15 | 79.3 |
MS.gene33216.t1 | MTR_1g013060 | 31.609 | 174 | 109 | 3 | 41 | 206 | 19 | 190 | 6.50e-15 | 75.9 |
MS.gene33216.t1 | MTR_1g070355 | 27.807 | 187 | 128 | 3 | 50 | 231 | 78 | 262 | 1.77e-14 | 78.2 |
MS.gene33216.t1 | MTR_5g076070 | 25.490 | 204 | 141 | 5 | 7 | 205 | 18 | 215 | 6.82e-14 | 73.9 |
MS.gene33216.t1 | MTR_7g113010 | 34.375 | 128 | 66 | 3 | 46 | 170 | 457 | 569 | 7.78e-14 | 76.3 |
MS.gene33216.t1 | MTR_3g006370 | 41.667 | 108 | 58 | 3 | 46 | 149 | 50 | 156 | 3.19e-13 | 70.9 |
MS.gene33216.t1 | MTR_0137s0040 | 41.304 | 92 | 48 | 2 | 38 | 129 | 28 | 113 | 3.71e-13 | 67.4 |
MS.gene33216.t1 | MTR_7g446520 | 29.717 | 212 | 125 | 7 | 12 | 218 | 53 | 245 | 1.23e-12 | 70.9 |
MS.gene33216.t1 | MTR_1g051860 | 35.135 | 74 | 48 | 0 | 827 | 900 | 4 | 77 | 8.38e-12 | 62.8 |
MS.gene33216.t1 | MTR_1g008290 | 36.538 | 104 | 64 | 2 | 130 | 232 | 33 | 135 | 1.32e-11 | 63.9 |
MS.gene33216.t1 | MTR_2g014100 | 28.108 | 185 | 113 | 3 | 61 | 225 | 59 | 243 | 2.73e-11 | 65.5 |
MS.gene33216.t1 | MTR_3g450850 | 28.571 | 182 | 116 | 5 | 42 | 210 | 43 | 223 | 8.20e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33216.t1 | AT4G38180 | 30.137 | 219 | 152 | 1 | 212 | 429 | 422 | 640 | 1.49e-31 | 133 |
MS.gene33216.t1 | AT4G38180 | 35.294 | 187 | 115 | 2 | 43 | 224 | 70 | 255 | 6.46e-24 | 108 |
MS.gene33216.t1 | AT4G38170 | 24.367 | 316 | 217 | 6 | 118 | 423 | 96 | 399 | 3.38e-28 | 121 |
MS.gene33216.t1 | AT3G22170 | 29.268 | 246 | 164 | 2 | 219 | 462 | 414 | 651 | 8.84e-28 | 121 |
MS.gene33216.t1 | AT3G22170 | 29.268 | 246 | 164 | 2 | 219 | 462 | 414 | 651 | 8.84e-28 | 121 |
MS.gene33216.t1 | AT2G27110 | 27.857 | 280 | 193 | 5 | 212 | 489 | 369 | 641 | 1.30e-26 | 117 |
MS.gene33216.t1 | AT2G27110 | 27.857 | 280 | 193 | 5 | 212 | 489 | 369 | 641 | 1.30e-26 | 117 |
MS.gene33216.t1 | AT2G27110 | 27.857 | 280 | 193 | 5 | 212 | 489 | 224 | 496 | 1.52e-26 | 117 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 347 | 583 | 5.31e-25 | 112 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 347 | 583 | 5.31e-25 | 112 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 347 | 583 | 5.47e-25 | 112 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 347 | 583 | 5.47e-25 | 112 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 290 | 526 | 6.68e-25 | 112 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 361 | 597 | 7.57e-25 | 112 |
MS.gene33216.t1 | AT4G19990 | 30.290 | 241 | 162 | 2 | 213 | 451 | 347 | 583 | 7.58e-25 | 112 |
MS.gene33216.t1 | AT3G06250 | 29.536 | 237 | 151 | 4 | 214 | 443 | 497 | 724 | 1.49e-24 | 110 |
MS.gene33216.t1 | AT3G06250 | 33.540 | 161 | 88 | 5 | 22 | 178 | 7 | 152 | 3.94e-17 | 87.0 |
MS.gene33216.t1 | AT3G06250 | 27.751 | 209 | 109 | 6 | 30 | 237 | 174 | 341 | 1.47e-15 | 82.0 |
MS.gene33216.t1 | AT3G06250 | 29.536 | 237 | 151 | 4 | 214 | 443 | 497 | 724 | 1.49e-24 | 110 |
MS.gene33216.t1 | AT3G06250 | 33.540 | 161 | 88 | 5 | 22 | 178 | 7 | 152 | 3.94e-17 | 87.0 |
MS.gene33216.t1 | AT3G06250 | 27.751 | 209 | 109 | 6 | 30 | 237 | 174 | 341 | 1.47e-15 | 82.0 |
MS.gene33216.t1 | AT3G06250 | 29.536 | 237 | 151 | 4 | 214 | 443 | 497 | 724 | 1.49e-24 | 110 |
MS.gene33216.t1 | AT3G06250 | 33.540 | 161 | 88 | 5 | 22 | 178 | 7 | 152 | 3.94e-17 | 87.0 |
MS.gene33216.t1 | AT3G06250 | 27.751 | 209 | 109 | 6 | 30 | 237 | 174 | 341 | 1.47e-15 | 82.0 |
MS.gene33216.t1 | AT5G18960 | 28.390 | 236 | 155 | 4 | 214 | 443 | 521 | 748 | 8.28e-23 | 105 |
MS.gene33216.t1 | AT5G18960 | 43.689 | 103 | 46 | 2 | 46 | 148 | 43 | 133 | 1.54e-17 | 88.6 |
MS.gene33216.t1 | AT5G18960 | 39.604 | 101 | 49 | 2 | 46 | 146 | 211 | 299 | 2.31e-14 | 78.2 |
MS.gene33216.t1 | AT5G18960 | 28.390 | 236 | 155 | 4 | 214 | 443 | 521 | 748 | 8.28e-23 | 105 |
MS.gene33216.t1 | AT5G18960 | 43.689 | 103 | 46 | 2 | 46 | 148 | 43 | 133 | 1.54e-17 | 88.6 |
MS.gene33216.t1 | AT5G18960 | 39.604 | 101 | 49 | 2 | 46 | 146 | 211 | 299 | 2.31e-14 | 78.2 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 280 | 564 | 8.53e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 280 | 564 | 8.72e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 321 | 605 | 9.56e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 321 | 605 | 9.56e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 321 | 605 | 9.56e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 321 | 605 | 9.61e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 321 | 605 | 9.61e-23 | 105 |
MS.gene33216.t1 | AT2G32250 | 26.910 | 301 | 200 | 8 | 185 | 481 | 321 | 605 | 9.89e-23 | 105 |
MS.gene33216.t1 | AT4G15090 | 26.510 | 298 | 203 | 5 | 214 | 506 | 400 | 686 | 5.26e-22 | 103 |
MS.gene33216.t1 | AT4G15090 | 30.348 | 201 | 128 | 6 | 28 | 223 | 36 | 229 | 2.62e-14 | 78.2 |
MS.gene33216.t1 | AT4G15090 | 26.510 | 298 | 203 | 5 | 214 | 506 | 400 | 686 | 5.26e-22 | 103 |
MS.gene33216.t1 | AT4G15090 | 30.348 | 201 | 128 | 6 | 28 | 223 | 36 | 229 | 2.62e-14 | 78.2 |
MS.gene33216.t1 | AT4G15090 | 26.510 | 298 | 203 | 5 | 214 | 506 | 400 | 686 | 5.26e-22 | 103 |
MS.gene33216.t1 | AT4G15090 | 30.348 | 201 | 128 | 6 | 28 | 223 | 36 | 229 | 2.62e-14 | 78.2 |
MS.gene33216.t1 | AT4G15090 | 26.510 | 298 | 203 | 5 | 214 | 506 | 400 | 686 | 5.26e-22 | 103 |
MS.gene33216.t1 | AT4G15090 | 30.348 | 201 | 128 | 6 | 28 | 223 | 36 | 229 | 2.62e-14 | 78.2 |
MS.gene33216.t1 | AT4G15090 | 26.510 | 298 | 203 | 5 | 214 | 506 | 400 | 686 | 5.26e-22 | 103 |
MS.gene33216.t1 | AT4G15090 | 30.348 | 201 | 128 | 6 | 28 | 223 | 36 | 229 | 2.62e-14 | 78.2 |
MS.gene33216.t1 | AT1G76320 | 25.564 | 266 | 191 | 2 | 213 | 478 | 336 | 594 | 2.04e-21 | 100 |
MS.gene33216.t1 | AT1G76320 | 25.564 | 266 | 191 | 2 | 213 | 478 | 336 | 594 | 2.09e-21 | 100 |
MS.gene33216.t1 | AT1G76320 | 25.564 | 266 | 191 | 2 | 213 | 478 | 336 | 594 | 2.09e-21 | 100 |
MS.gene33216.t1 | AT1G76320 | 25.564 | 266 | 191 | 2 | 213 | 478 | 336 | 594 | 4.35e-21 | 99.8 |
MS.gene33216.t1 | AT3G59470 | 45.631 | 103 | 52 | 3 | 46 | 146 | 70 | 170 | 1.36e-19 | 90.1 |
MS.gene33216.t1 | AT3G59470 | 45.631 | 103 | 52 | 3 | 46 | 146 | 70 | 170 | 1.36e-19 | 90.1 |
MS.gene33216.t1 | AT3G59470 | 45.631 | 103 | 52 | 3 | 46 | 146 | 82 | 182 | 1.93e-19 | 89.7 |
MS.gene33216.t1 | AT3G07500 | 42.735 | 117 | 59 | 4 | 46 | 160 | 33 | 143 | 2.42e-18 | 85.5 |
MS.gene33216.t1 | AT1G52520 | 26.882 | 279 | 180 | 7 | 160 | 420 | 363 | 635 | 4.04e-18 | 90.1 |
MS.gene33216.t1 | AT1G52520 | 37.273 | 110 | 60 | 4 | 46 | 152 | 85 | 188 | 5.88e-11 | 67.0 |
MS.gene33216.t1 | AT1G10240 | 26.754 | 228 | 133 | 7 | 212 | 424 | 400 | 608 | 1.37e-16 | 85.1 |
MS.gene33216.t1 | AT1G10240 | 35.971 | 139 | 83 | 2 | 45 | 177 | 47 | 185 | 7.61e-16 | 82.8 |
MS.gene33216.t1 | AT1G10240 | 26.754 | 228 | 133 | 7 | 212 | 424 | 400 | 608 | 1.37e-16 | 85.1 |
MS.gene33216.t1 | AT1G10240 | 35.971 | 139 | 83 | 2 | 45 | 177 | 47 | 185 | 7.61e-16 | 82.8 |
MS.gene33216.t1 | AT4G12850 | 38.211 | 123 | 72 | 3 | 46 | 166 | 11 | 131 | 2.72e-16 | 77.4 |
MS.gene33216.t1 | AT5G28530 | 25.000 | 232 | 161 | 4 | 209 | 438 | 412 | 632 | 2.31e-14 | 78.2 |
MS.gene33216.t1 | AT5G28530 | 30.435 | 138 | 88 | 3 | 46 | 177 | 55 | 190 | 2.65e-13 | 74.7 |
MS.gene33216.t1 | AT5G28530 | 25.000 | 232 | 161 | 4 | 209 | 438 | 412 | 632 | 2.31e-14 | 78.2 |
MS.gene33216.t1 | AT5G28530 | 30.435 | 138 | 88 | 3 | 46 | 177 | 55 | 190 | 2.65e-13 | 74.7 |
MS.gene33216.t1 | AT5G28530 | 25.000 | 232 | 161 | 4 | 209 | 438 | 349 | 569 | 2.88e-14 | 77.8 |
MS.gene33216.t1 | AT5G28530 | 28.947 | 152 | 100 | 3 | 46 | 191 | 55 | 204 | 1.94e-13 | 75.1 |
MS.gene33216.t1 | AT4G12850 | 39.604 | 101 | 59 | 2 | 46 | 146 | 11 | 109 | 4.40e-14 | 70.9 |
MS.gene33216.t1 | AT4G12850 | 39.604 | 101 | 59 | 2 | 46 | 146 | 11 | 109 | 6.02e-14 | 71.6 |
MS.gene33216.t1 | AT5G28530 | 24.051 | 237 | 161 | 5 | 209 | 438 | 412 | 636 | 9.02e-14 | 76.3 |
MS.gene33216.t1 | AT5G28530 | 30.435 | 138 | 88 | 3 | 46 | 177 | 55 | 190 | 2.38e-13 | 74.7 |
MS.gene33216.t1 | AT5G28530 | 24.051 | 237 | 161 | 5 | 209 | 438 | 349 | 573 | 1.00e-13 | 75.9 |
MS.gene33216.t1 | AT5G28530 | 30.435 | 138 | 88 | 3 | 46 | 177 | 55 | 190 | 1.95e-13 | 75.1 |
MS.gene33216.t1 | AT1G80010 | 25.333 | 225 | 151 | 5 | 211 | 423 | 442 | 661 | 3.05e-11 | 68.2 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCACACAGTAAGGAATTT+TGG | 0.135543 | 6.3:+60700434 | None:intergenic |
TTAAAATCTGAAGTTGTTTC+TGG | 0.137871 | 6.3:+60700352 | None:intergenic |
TGGGGAATAACTATTATATT+TGG | 0.169513 | 6.3:+60702387 | None:intergenic |
GATCTTGCATCCATTTATTT+TGG | 0.182893 | 6.3:+60702910 | None:intergenic |
GGTAATTTATGCTTACTTAT+AGG | 0.189034 | 6.3:+60703698 | None:intergenic |
ACTTTGATCTTCAGAGTTAA+AGG | 0.202395 | 6.3:+60702482 | None:intergenic |
GTAATTTATGCTTACTTATA+GGG | 0.213606 | 6.3:+60703699 | None:intergenic |
AAATTTCGTCTCTTTACTTT+TGG | 0.213628 | 6.3:+60700555 | None:intergenic |
ACCTCTTCAATATGTACTTT+TGG | 0.218894 | 6.3:+60702367 | None:intergenic |
CGATTTGCCACAACTATCTT+TGG | 0.225821 | 6.3:+60702282 | None:intergenic |
CCATTAGAATTCATATTTAC+TGG | 0.226524 | 6.3:+60704510 | None:intergenic |
GATGAAGAGAAGGAGTTAAA+TGG | 0.228017 | 6.3:-60701871 | MS.gene33216:CDS |
TGGAGCTCTCGAATCTTTCT+TGG | 0.243900 | 6.3:+60700372 | None:intergenic |
CCCTCACTTGAAGCATATTC+TGG | 0.249727 | 6.3:-60701823 | MS.gene33216:CDS |
TCTTGATATGTATGTGAAAA+TGG | 0.253215 | 6.3:+60696872 | None:intergenic |
AATTTATATGCTGGCTTTGT+TGG | 0.254717 | 6.3:-60703956 | MS.gene33216:CDS |
TTGTGTTTATTAGCAGTTTC+GGG | 0.292039 | 6.3:+60700936 | None:intergenic |
GCTTGGCTTAGAGCTCAAAT+AGG | 0.299137 | 6.3:-60702039 | MS.gene33216:CDS |
TATTCAATGCAGGCATCTTC+TGG | 0.309663 | 6.3:+60702679 | None:intergenic |
ACGACCTTCACCAAAATAAA+TGG | 0.312043 | 6.3:-60702920 | MS.gene33216:CDS |
AATGACATGAATAACGAAAA+TGG | 0.314237 | 6.3:-60696705 | MS.gene33216:CDS |
GATAAATGACATGCGTTATA+AGG | 0.325984 | 6.3:-60702727 | MS.gene33216:CDS |
GATTCAGTTTGCTCTCGATA+TGG | 0.330744 | 6.3:-60697457 | MS.gene33216:CDS |
GAAGATGCCTGCATTGAATA+TGG | 0.336910 | 6.3:-60702676 | MS.gene33216:CDS |
GGAGAACACGGGGAAGAATT+TGG | 0.347555 | 6.3:-60696684 | MS.gene33216:CDS |
AATTCTAATTCTGATGTTGC+TGG | 0.349006 | 6.3:-60700330 | MS.gene33216:intron |
CTTCATTTCCTTCATCCTCT+TGG | 0.349382 | 6.3:+60703517 | None:intergenic |
ATTCTTACTCTATAAATAGA+TGG | 0.363380 | 6.3:-60700884 | MS.gene33216:CDS |
CTTGGCTTAGAGCTCAAATA+GGG | 0.370124 | 6.3:-60702038 | MS.gene33216:CDS |
CTTGTGTTTATTAGCAGTTT+CGG | 0.372018 | 6.3:+60700935 | None:intergenic |
TCAAACTCCATGCCAACATA+TGG | 0.373528 | 6.3:+60704007 | None:intergenic |
ATTCAGTTTGCTCTCGATAT+GGG | 0.394596 | 6.3:-60697456 | MS.gene33216:CDS |
CCAGTAAATATGAATTCTAA+TGG | 0.398242 | 6.3:-60704510 | MS.gene33216:intron |
GGGATGCAAGCTCATGATTA+TGG | 0.401814 | 6.3:+60703720 | None:intergenic |
GTGTGGAGGAATTTACTAGA+TGG | 0.402207 | 6.3:-60700419 | MS.gene33216:CDS |
TGATCTCTCTCTACCATTGC+CGG | 0.405576 | 6.3:+60701091 | None:intergenic |
ATCATCTGTTACTATCTCAT+TGG | 0.408367 | 6.3:+60702086 | None:intergenic |
CGAACTAGAGAAAAGATAAC+TGG | 0.408912 | 6.3:+60702615 | None:intergenic |
TCAATTTCAACCAAGTCCTT+TGG | 0.409112 | 6.3:-60696565 | MS.gene33216:CDS |
GGAGCTCTCGAATCTTTCTT+GGG | 0.412717 | 6.3:+60700373 | None:intergenic |
TCCTGATGTTGGCGAGGCAT+TGG | 0.416874 | 6.3:-60697493 | MS.gene33216:CDS |
ATGGATGCAAGATCTCTATA+AGG | 0.417795 | 6.3:-60702901 | MS.gene33216:CDS |
TATAAATAGATGGTTAATCA+TGG | 0.420242 | 6.3:-60700874 | MS.gene33216:CDS |
AACCTGTGATGTACTAATAC+TGG | 0.422941 | 6.3:+60696838 | None:intergenic |
ATGAAGAGAAGGAGTTAAAT+GGG | 0.427420 | 6.3:-60701870 | MS.gene33216:CDS |
AGCAATGTCAATGAACCATT+AGG | 0.429016 | 6.3:-60704549 | MS.gene33216:CDS |
AGCACATGTTGTCATTAGTC+GGG | 0.431183 | 6.3:-60703783 | MS.gene33216:CDS |
AGCAAGTTGTCCGACAGGTT+TGG | 0.433453 | 6.3:-60700482 | MS.gene33216:CDS |
TAGAGAGAGATCAGGAGGTT+TGG | 0.436835 | 6.3:-60701081 | MS.gene33216:CDS |
TCCACATCAACAACAAATCT+TGG | 0.437345 | 6.3:-60702126 | MS.gene33216:CDS |
TTGGCGAGGCATTGGGTGTA+AGG | 0.443748 | 6.3:-60697485 | MS.gene33216:CDS |
GGTTTATCGCCACTCCCTAA+TGG | 0.444741 | 6.3:+60704534 | None:intergenic |
TGGAGGTGCACTGGATTGTA+TGG | 0.452233 | 6.3:-60700963 | MS.gene33216:CDS |
ATGTTGCAGCAGCAGCTACT+TGG | 0.453566 | 6.3:-60697536 | MS.gene33216:intron |
TCTCGTAAGGATATCAGAAC+TGG | 0.455278 | 6.3:-60703812 | MS.gene33216:CDS |
AAAATAACCCATGTGAATGA+TGG | 0.455388 | 6.3:-60701613 | MS.gene33216:CDS |
TCAAGCAGCTGAGGTAGAAA+TGG | 0.462861 | 6.3:-60703651 | MS.gene33216:CDS |
TGAAAAGAATGATGAAGAGA+AGG | 0.463292 | 6.3:-60701881 | MS.gene33216:CDS |
TCAAGCAAGGCTGCTGAAGA+TGG | 0.463547 | 6.3:-60702225 | MS.gene33216:CDS |
GCCTCGCCAACATCAGGATC+TGG | 0.463918 | 6.3:+60697498 | None:intergenic |
CCTGATGTTGGCGAGGCATT+GGG | 0.464116 | 6.3:-60697492 | MS.gene33216:CDS |
CCCAATGCCTCGCCAACATC+AGG | 0.464760 | 6.3:+60697492 | None:intergenic |
TAGCACATGTTGTCATTAGT+CGG | 0.467396 | 6.3:-60703784 | MS.gene33216:CDS |
TGGATGTGTGCTAGACAGTA+AGG | 0.470932 | 6.3:-60702325 | MS.gene33216:CDS |
GCAATGTCAATGAACCATTA+GGG | 0.473025 | 6.3:-60704548 | MS.gene33216:CDS |
TTCAGCCTCGGTGACTAACT+TGG | 0.473758 | 6.3:-60700625 | MS.gene33216:intron |
CAATTAAGTGAGAGCTTCAA+TGG | 0.473964 | 6.3:-60702816 | MS.gene33216:CDS |
GCTTGAAGACGAAGAAGAAT+AGG | 0.479969 | 6.3:+60700579 | None:intergenic |
CAGGAGGTTTGGCTTGTATG+TGG | 0.483136 | 6.3:-60701070 | MS.gene33216:CDS |
GGAAAACGTGGACCTTGTAG+TGG | 0.484503 | 6.3:-60701533 | MS.gene33216:CDS |
CCTCGGTGACTAACTTGGTT+CGG | 0.485078 | 6.3:-60700620 | MS.gene33216:CDS |
CATTCTACCGATGCTTATCA+TGG | 0.489055 | 6.3:-60696660 | MS.gene33216:CDS |
GTAGAAATGGCAAATCGATC+TGG | 0.489212 | 6.3:-60703638 | MS.gene33216:CDS |
TGTGAATGATGGAGACTTGT+TGG | 0.491546 | 6.3:-60701602 | MS.gene33216:CDS |
AAATTCTAACACATTATAAG+TGG | 0.492971 | 6.3:+60702770 | None:intergenic |
GCTGTCAGTTGCGCCGGCAA+TGG | 0.498587 | 6.3:-60701104 | MS.gene33216:intron |
GATCTATGTCGCACTGCAGT+AGG | 0.499374 | 6.3:-60702252 | MS.gene33216:CDS |
AAATCTATATGCATGGTCTT+CGG | 0.500652 | 6.3:+60703982 | None:intergenic |
GCTTAAAATACCAAAGGACT+TGG | 0.501002 | 6.3:+60696555 | None:intergenic |
CTCAACAAATGTAGAGCCTC+AGG | 0.502446 | 6.3:-60696604 | MS.gene33216:CDS |
CAGCAAGATTTAATTCATGA+AGG | 0.504919 | 6.3:-60701655 | MS.gene33216:CDS |
AGCCAGTATTAGTACATCAC+AGG | 0.509539 | 6.3:-60696840 | MS.gene33216:intron |
GTAAATTCCTCCACACAGTA+AGG | 0.512769 | 6.3:+60700426 | None:intergenic |
TAGAGTAAGAATTAGCAAGA+TGG | 0.517050 | 6.3:+60700895 | None:intergenic |
AGATGGGGTGATGATCGCTT+TGG | 0.517698 | 6.3:-60700402 | MS.gene33216:CDS |
TTCTGCTGCTCAAGCAGCTG+AGG | 0.524786 | 6.3:-60703660 | MS.gene33216:CDS |
CAAACTCCATGCCAACATAT+GGG | 0.526793 | 6.3:+60704008 | None:intergenic |
TAATTTATGCTTACTTATAG+GGG | 0.532358 | 6.3:+60703700 | None:intergenic |
AAATAGTGCTGTCAAAGGAA+AGG | 0.537907 | 6.3:-60701971 | MS.gene33216:CDS |
CTACTTGGCTATCTATACCA+TGG | 0.540404 | 6.3:+60701707 | None:intergenic |
TTTAACTGCCAAGAGGATGA+AGG | 0.543689 | 6.3:-60703525 | MS.gene33216:CDS |
CAAGAGGATGAAGGAAATGA+AGG | 0.543859 | 6.3:-60703516 | MS.gene33216:CDS |
ATGATATCCATATTCAATGC+AGG | 0.546116 | 6.3:+60702669 | None:intergenic |
ATAAATTACCATCACAAAGG+AGG | 0.551834 | 6.3:-60703685 | MS.gene33216:CDS |
GCCATTCCAGATCCTGATGT+TGG | 0.553229 | 6.3:-60697504 | MS.gene33216:CDS |
GGCAATGGTAGAGAGAGATC+AGG | 0.553296 | 6.3:-60701089 | MS.gene33216:CDS |
CCACATGAGTACCCACTACA+AGG | 0.554924 | 6.3:+60701521 | None:intergenic |
AGGATGAAGGAAATGAAGGA+AGG | 0.556547 | 6.3:-60703512 | MS.gene33216:intron |
CTAGGCGGTTTGAGCAATGT+TGG | 0.558898 | 6.3:-60700524 | MS.gene33216:CDS |
TTCAGTTTGCTCTCGATATG+GGG | 0.560942 | 6.3:-60697455 | MS.gene33216:CDS |
AATAGTGCTGTCAAAGGAAA+GGG | 0.561210 | 6.3:-60701970 | MS.gene33216:CDS |
AGTCGCTTTCAAACATCACC+TGG | 0.562745 | 6.3:+60697427 | None:intergenic |
GAGTCAACACGTTGGAGGGA+GGG | 0.564822 | 6.3:-60703585 | MS.gene33216:CDS |
AACTGTGAGAGTATGTCAGC+TGG | 0.564908 | 6.3:+60701928 | None:intergenic |
GAAGATATAATCCCATATGT+TGG | 0.564964 | 6.3:-60704019 | MS.gene33216:CDS |
AAAGTAAATAGTGCTGTCAA+AGG | 0.565168 | 6.3:-60701976 | MS.gene33216:CDS |
TAAATTACCATCACAAAGGA+GGG | 0.565763 | 6.3:-60703684 | MS.gene33216:CDS |
ATAAATAGATGGTTAATCAT+GGG | 0.566216 | 6.3:-60700873 | MS.gene33216:intron |
CCAGAATATGCTTCAAGTGA+GGG | 0.566253 | 6.3:+60701823 | None:intergenic |
AAAAGTACATATTGAAGAGG+TGG | 0.567774 | 6.3:-60702365 | MS.gene33216:CDS |
GTCAATGAACCATTAGGGAG+TGG | 0.572938 | 6.3:-60704543 | MS.gene33216:CDS |
TTTATGAGTCAACACGTTGG+AGG | 0.573340 | 6.3:-60703590 | MS.gene33216:CDS |
TTATGAGTCAACACGTTGGA+GGG | 0.576333 | 6.3:-60703589 | MS.gene33216:CDS |
CTGTATCAAAAGCCATGGCT+TGG | 0.580447 | 6.3:-60702056 | MS.gene33216:CDS |
GATGTGGAATGGAGGTGCAC+TGG | 0.582463 | 6.3:-60700972 | MS.gene33216:CDS |
CAAAATTCCTTACTGTGTGG+AGG | 0.582924 | 6.3:-60700433 | MS.gene33216:CDS |
AATTATAAAATCTATATGCA+TGG | 0.584715 | 6.3:+60703975 | None:intergenic |
ACCAAGATTTGTTGTTGATG+TGG | 0.585966 | 6.3:+60702125 | None:intergenic |
TGTGGAGGAATTTACTAGAT+GGG | 0.586159 | 6.3:-60700418 | MS.gene33216:CDS |
CCCAAAAGTACATATTGAAG+AGG | 0.586430 | 6.3:-60702368 | MS.gene33216:CDS |
CAACATTGCTCAAACCGCCT+AGG | 0.586820 | 6.3:+60700525 | None:intergenic |
TTCCAAAATTCCTTACTGTG+TGG | 0.587142 | 6.3:-60700436 | MS.gene33216:CDS |
TCACAAATGACGATGTGGAA+TGG | 0.589093 | 6.3:-60700983 | MS.gene33216:CDS |
TATAATCCCATATGTTGGCA+TGG | 0.590560 | 6.3:-60704014 | MS.gene33216:CDS |
GCCAACATCAGGATCTGGAA+TGG | 0.595190 | 6.3:+60697503 | None:intergenic |
ACAAGTCTCCATCATTCACA+TGG | 0.596736 | 6.3:+60701605 | None:intergenic |
TACCACTGTATCAAAAGCCA+TGG | 0.599649 | 6.3:-60702061 | MS.gene33216:CDS |
TGAGTCAACACGTTGGAGGG+AGG | 0.601863 | 6.3:-60703586 | MS.gene33216:CDS |
GCCAGAATATGCTTCAAGTG+AGG | 0.602267 | 6.3:+60701822 | None:intergenic |
AGCTGACATACTCTCACAGT+TGG | 0.603751 | 6.3:-60701926 | MS.gene33216:CDS |
GTTACCCAACAAAATAGTCA+TGG | 0.604449 | 6.3:-60701769 | MS.gene33216:CDS |
AACTCAGCAGATGGTGCCTG+AGG | 0.610239 | 6.3:+60696588 | None:intergenic |
GGCTTGTATGTGGAAGTCAG+AGG | 0.610797 | 6.3:-60701060 | MS.gene33216:CDS |
GCAGAAACCCTCCTTTGTGA+TGG | 0.614369 | 6.3:+60703677 | None:intergenic |
TCCAGATCCTGATGTTGGCG+AGG | 0.614821 | 6.3:-60697499 | MS.gene33216:CDS |
TTGAGCTCTAAGCCAAGCCA+TGG | 0.619354 | 6.3:+60702044 | None:intergenic |
TTGAGTGCTTAAAATACCAA+AGG | 0.619363 | 6.3:+60696549 | None:intergenic |
GAAGCAATCCATGTGAATGA+TGG | 0.619844 | 6.3:-60701571 | MS.gene33216:CDS |
TTAGAATTCATATTTACTGG+AGG | 0.621664 | 6.3:+60704513 | None:intergenic |
AGAAGATCCAAAGATAGTTG+TGG | 0.622671 | 6.3:-60702289 | MS.gene33216:CDS |
TGCAGTAGGAATATCAAGCA+AGG | 0.624129 | 6.3:-60702238 | MS.gene33216:CDS |
ATAAAGACATTTATGAACCA+TGG | 0.626130 | 6.3:-60701724 | MS.gene33216:CDS |
AATAACGAAAATGGAGAACA+CGG | 0.627085 | 6.3:-60696696 | MS.gene33216:CDS |
AGAGGTGGACTAAACAAGCT+CGG | 0.635859 | 6.3:-60702350 | MS.gene33216:CDS |
CCTTGTAGTGGGTACTCATG+TGG | 0.638134 | 6.3:-60701521 | MS.gene33216:CDS |
TGATGGTGATGAGTCAGCTA+AGG | 0.641939 | 6.3:-60701554 | MS.gene33216:CDS |
GTCATTAGTCGGGAATCAAG+TGG | 0.642505 | 6.3:-60703773 | MS.gene33216:CDS |
AGCATAAATTACCATCACAA+AGG | 0.644723 | 6.3:-60703688 | MS.gene33216:CDS |
GTTGGAGGGAGGGAGAATGT+TGG | 0.645198 | 6.3:-60703575 | MS.gene33216:CDS |
ATCAACAACAAATCTTGGTG+AGG | 0.650143 | 6.3:-60702121 | MS.gene33216:CDS |
GCAATCATTTAACTGCCAAG+AGG | 0.652505 | 6.3:-60703532 | MS.gene33216:CDS |
ACTCATCACCATCATTCACA+TGG | 0.652925 | 6.3:+60701563 | None:intergenic |
TTGGCTTAGAGCTCAAATAG+GGG | 0.652981 | 6.3:-60702037 | MS.gene33216:CDS |
CTCGAAGAGCATGACAACAA+AGG | 0.653528 | 6.3:+60702421 | None:intergenic |
ATAACGAAAATGGAGAACAC+GGG | 0.654047 | 6.3:-60696695 | MS.gene33216:CDS |
GGATGTGTGCTAGACAGTAA+GGG | 0.658517 | 6.3:-60702324 | MS.gene33216:CDS |
AATGGTAGAGAGAGATCAGG+AGG | 0.658971 | 6.3:-60701086 | MS.gene33216:CDS |
AAAGCTCACAAATGACGATG+TGG | 0.660784 | 6.3:-60700988 | MS.gene33216:CDS |
AAGATGGTTGATCAAATCAG+AGG | 0.665287 | 6.3:+60700911 | None:intergenic |
TGGACTAAACAAGCTCGGAG+TGG | 0.667189 | 6.3:-60702345 | MS.gene33216:CDS |
AATTAGAAGACCAAACCTGT+CGG | 0.671067 | 6.3:+60700472 | None:intergenic |
AGTGCTGTCAAAGGAAAGGG+TGG | 0.675036 | 6.3:-60701967 | MS.gene33216:CDS |
CAAGTCTCCATCATTCACAT+GGG | 0.677842 | 6.3:+60701606 | None:intergenic |
TGAAATTGAAACTCAGCAGA+TGG | 0.678366 | 6.3:+60696579 | None:intergenic |
GAAAACGTGGACCTTGTAGT+GGG | 0.678415 | 6.3:-60701532 | MS.gene33216:CDS |
TGGCTTAGAGCTCAAATAGG+GGG | 0.682322 | 6.3:-60702036 | MS.gene33216:CDS |
TGAAAGCGACTCTCTTAACG+TGG | 0.689219 | 6.3:-60697415 | MS.gene33216:intron |
CAAATGACGATGTGGAATGG+AGG | 0.694641 | 6.3:-60700980 | MS.gene33216:CDS |
TGAGTCAGCTAAGGAAAACG+TGG | 0.707595 | 6.3:-60701545 | MS.gene33216:CDS |
TAACGAAAATGGAGAACACG+GGG | 0.724055 | 6.3:-60696694 | MS.gene33216:CDS |
GAGTTTATGAGTCAACACGT+TGG | 0.729008 | 6.3:-60703593 | MS.gene33216:CDS |
GTGGAGGAATTTACTAGATG+GGG | 0.734175 | 6.3:-60700417 | MS.gene33216:CDS |
CCGAACCAAGTTAGTCACCG+AGG | 0.751183 | 6.3:+60700620 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 60696557 | 60704595 | 60696557 | ID=MS.gene33216 |
chr6.3 | mRNA | 60696557 | 60704595 | 60696557 | ID=MS.gene33216.t1;Parent=MS.gene33216 |
chr6.3 | exon | 60704511 | 60704595 | 60704511 | ID=MS.gene33216.t1.exon1;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60704511 | 60704595 | 60704511 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60703513 | 60704079 | 60703513 | ID=MS.gene33216.t1.exon2;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60703513 | 60704079 | 60703513 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60701469 | 60702966 | 60701469 | ID=MS.gene33216.t1.exon3;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60701469 | 60702966 | 60701469 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60700874 | 60701118 | 60700874 | ID=MS.gene33216.t1.exon4;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60700874 | 60701118 | 60700874 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60700331 | 60700642 | 60700331 | ID=MS.gene33216.t1.exon5;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60700331 | 60700642 | 60700331 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60697416 | 60697546 | 60697416 | ID=MS.gene33216.t1.exon6;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60697416 | 60697546 | 60697416 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60696841 | 60696900 | 60696841 | ID=MS.gene33216.t1.exon7;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60696841 | 60696900 | 60696841 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
chr6.3 | exon | 60696557 | 60696730 | 60696557 | ID=MS.gene33216.t1.exon8;Parent=MS.gene33216.t1 |
chr6.3 | CDS | 60696557 | 60696730 | 60696557 | ID=cds.MS.gene33216.t1;Parent=MS.gene33216.t1 |
Gene Sequence |
Protein sequence |