AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33689

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33689.t1 MTR_4g014070 70.526 190 29 4 70 240 563 744 1.30e-65 217
MS.gene33689.t1 MTR_5g083480 59.563 183 61 3 70 240 555 736 5.41e-57 194
MS.gene33689.t1 MTR_5g083480 59.563 183 61 3 70 240 558 739 6.67e-57 194
MS.gene33689.t1 MTR_4g014210 58.163 98 10 2 1 71 29 122 1.10e-27 104
MS.gene33689.t1 MTR_8g107470 40.642 187 70 9 70 230 435 606 4.79e-25 103
MS.gene33689.t1 MTR_4g113100 38.674 181 82 7 70 230 407 578 2.21e-24 101
MS.gene33689.t1 MTR_5g009660 36.000 200 92 8 67 242 357 544 1.04e-23 99.8
MS.gene33689.t1 MTR_8g099195 35.500 200 93 7 67 242 380 567 2.22e-23 99.0
MS.gene33689.t1 MTR_4g014240 58.163 98 14 1 1 71 900 997 2.43e-22 95.9
MS.gene33689.t1 MTR_6g470960 39.560 182 79 7 70 230 438 609 4.46e-22 95.1
MS.gene33689.t1 MTR_3g062500 35.484 186 82 7 70 230 425 597 2.55e-21 92.8
MS.gene33689.t1 MTR_3g062500 35.484 186 82 7 70 230 415 587 2.73e-21 92.8
MS.gene33689.t1 MTR_3g090665 36.813 182 94 6 66 230 111 288 4.15e-21 90.9
MS.gene33689.t1 MTR_5g068210 34.848 198 93 7 70 242 373 559 4.85e-21 92.0
MS.gene33689.t1 MTR_5g078080 35.556 180 89 7 70 230 400 571 7.39e-21 91.7
MS.gene33689.t1 MTR_5g055470 36.224 196 99 9 67 244 397 584 1.54e-20 90.5
MS.gene33689.t1 MTR_1g061590 36.318 201 78 9 67 230 420 607 3.37e-20 89.7
MS.gene33689.t1 MTR_5g075630 39.429 175 90 8 70 230 416 588 4.10e-20 89.4
MS.gene33689.t1 MTR_7g073710 32.609 184 96 5 67 230 392 567 4.19e-20 89.4
MS.gene33689.t1 MTR_1g028890 34.021 194 91 8 70 242 351 528 5.55e-20 89.0
MS.gene33689.t1 MTR_4g014320 48.276 116 27 4 2 91 891 999 5.41e-19 86.3
MS.gene33689.t1 MTR_1g110280 35.165 182 96 6 70 230 418 598 6.60e-19 85.9
MS.gene33689.t1 MTR_3g093710 34.031 191 101 6 70 242 403 586 7.47e-19 85.9
MS.gene33689.t1 MTR_7g103440 33.831 201 83 9 67 230 433 620 5.88e-18 83.2
MS.gene33689.t1 MTR_3g090660 36.264 182 87 7 70 230 381 554 6.45e-18 82.8
MS.gene33689.t1 MTR_7g059225 31.132 212 99 7 70 247 441 639 9.76e-18 82.4
MS.gene33689.t1 MTR_2g030380 35.468 203 104 10 54 231 826 1026 1.35e-17 82.0
MS.gene33689.t1 MTR_2g030380 35.468 203 104 10 54 231 808 1008 1.42e-17 82.0
MS.gene33689.t1 MTR_4g014130 97.222 36 1 0 205 240 1 36 1.58e-17 75.5
MS.gene33689.t1 MTR_2g023150 32.353 170 92 5 71 231 56 211 3.55e-16 75.9
MS.gene33689.t1 MTR_1g009270 33.505 194 109 7 71 247 404 594 6.15e-16 77.0
MS.gene33689.t1 MTR_2g070020 30.645 186 113 5 77 246 877 1062 1.92e-15 75.9
MS.gene33689.t1 MTR_1g100787 30.108 186 96 3 66 225 1048 1225 7.58e-15 74.3
MS.gene33689.t1 MTR_2g072520 33.523 176 99 6 70 228 84 258 3.62e-14 70.9
MS.gene33689.t1 MTR_1g047670 30.348 201 117 7 64 246 871 1066 4.94e-14 71.6
MS.gene33689.t1 MTR_5g087780 34.821 112 62 3 144 244 859 970 6.54e-14 71.2
MS.gene33689.t1 MTR_5g094380 31.414 191 106 7 73 247 330 511 2.26e-13 69.7
MS.gene33689.t1 MTR_2g008740 31.250 176 100 5 71 228 174 346 4.04e-13 68.6
MS.gene33689.t1 MTR_4g088320 30.357 168 100 6 77 228 764 930 4.10e-13 68.9
MS.gene33689.t1 MTR_3g078250 30.000 170 110 4 71 234 430 596 5.42e-13 68.6
MS.gene33689.t1 MTR_7g084220 26.804 194 96 4 71 233 849 1027 5.49e-13 68.6
MS.gene33689.t1 MTR_5g021670 31.875 160 89 6 70 211 894 1051 5.98e-13 68.6
MS.gene33689.t1 MTR_2g105900 30.693 202 107 9 71 247 404 597 2.63e-12 66.6
MS.gene33689.t1 MTR_8g087420 29.630 189 112 7 77 247 406 591 2.72e-12 66.2
MS.gene33689.t1 MTR_6g093050 30.102 196 117 7 71 247 402 596 3.06e-12 66.2
MS.gene33689.t1 MTR_4g107620 27.368 190 118 6 73 246 377 562 5.54e-12 65.5
MS.gene33689.t1 MTR_7g063010 31.138 167 98 3 81 231 410 575 8.13e-12 65.1
MS.gene33689.t1 MTR_3g449390 30.814 172 82 7 77 223 777 936 1.33e-11 64.3
MS.gene33689.t1 MTR_7g007620 31.387 137 80 3 77 200 511 646 1.79e-11 63.9
MS.gene33689.t1 MTR_8g047160 33.333 138 76 4 77 200 422 557 2.78e-11 63.5
MS.gene33689.t1 MTR_3g094710 41.304 92 48 2 143 228 899 990 2.85e-11 63.5
MS.gene33689.t1 MTR_6g069030 24.242 198 97 7 73 232 390 572 4.29e-11 62.8
MS.gene33689.t1 MTR_0491s0030 34.532 139 73 5 77 200 595 730 4.67e-11 62.8
MS.gene33689.t1 MTR_1g010220 29.240 171 100 5 78 232 482 647 4.70e-11 62.8
MS.gene33689.t1 MTR_8g047230 34.532 139 73 5 77 200 766 901 4.85e-11 62.8
MS.gene33689.t1 MTR_6g015265 36.458 96 56 1 143 233 976 1071 5.18e-11 62.8
MS.gene33689.t1 MTR_7g051040 33.333 132 72 4 82 199 739 868 6.99e-11 62.4
MS.gene33689.t1 MTR_6g015190 37.500 96 55 1 143 233 977 1072 7.73e-11 62.4
MS.gene33689.t1 MTR_1g082580 30.556 144 79 4 73 198 213 353 9.91e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33689.t1 AT3G51740 56.316 190 56 4 70 240 597 778 1.47e-55 191
MS.gene33689.t1 AT2G26730 41.808 177 81 7 70 230 410 580 1.86e-25 105
MS.gene33689.t1 AT1G68400 38.547 179 94 6 67 230 420 597 1.68e-22 96.3
MS.gene33689.t1 AT4G23740 36.170 188 85 6 67 230 393 569 3.63e-22 95.5
MS.gene33689.t1 AT4G23740 36.170 188 85 6 67 230 393 569 3.63e-22 95.5
MS.gene33689.t1 AT3G08680 34.031 191 103 6 70 242 401 586 2.87e-21 92.8
MS.gene33689.t1 AT3G08680 34.031 191 103 6 70 242 401 586 2.87e-21 92.8
MS.gene33689.t1 AT5G05160 33.714 175 96 6 71 230 408 577 5.97e-21 92.0
MS.gene33689.t1 AT5G58300 37.912 182 83 7 70 230 418 590 3.39e-20 89.7
MS.gene33689.t1 AT5G58300 37.912 182 83 7 70 230 418 590 3.39e-20 89.7
MS.gene33689.t1 AT5G58300 37.912 182 83 7 70 230 418 590 3.39e-20 89.7
MS.gene33689.t1 AT3G17840 37.288 177 89 7 70 229 424 595 5.97e-20 89.0
MS.gene33689.t1 AT1G48480 36.158 177 91 7 70 229 430 601 6.35e-20 89.0
MS.gene33689.t1 AT3G24660 31.000 200 116 5 70 247 433 632 7.62e-19 85.9
MS.gene33689.t1 AT5G41680 33.146 178 97 5 68 229 116 287 2.43e-18 83.2
MS.gene33689.t1 AT1G64210 30.612 196 111 7 67 242 363 553 4.75e-18 83.2
MS.gene33689.t1 AT2G36570 36.139 202 81 9 67 230 415 606 4.96e-18 83.6
MS.gene33689.t1 AT5G16590 33.908 174 98 6 71 230 403 573 2.22e-17 81.3
MS.gene33689.t1 AT3G02880 31.122 196 98 8 71 242 405 587 2.30e-17 81.3
MS.gene33689.t1 AT5G41680 54.054 74 31 1 159 229 240 313 3.86e-17 80.1
MS.gene33689.t1 AT5G24100 29.902 204 111 6 61 242 390 583 3.96e-16 77.8
MS.gene33689.t1 AT5G53320 30.814 172 95 4 73 230 369 530 5.78e-16 77.4
MS.gene33689.t1 AT4G20940 32.984 191 91 7 70 231 814 996 2.12e-15 75.9
MS.gene33689.t1 AT1G17230 30.653 199 119 5 64 246 857 1052 7.72e-15 74.3
MS.gene33689.t1 AT1G17230 30.653 199 119 5 64 246 857 1052 9.36e-15 73.9
MS.gene33689.t1 AT4G31250 30.769 195 116 8 71 247 427 620 5.01e-14 71.6
MS.gene33689.t1 AT3G20190 33.163 196 110 8 71 247 244 437 6.15e-14 71.2
MS.gene33689.t1 AT3G20190 33.163 196 110 8 71 247 433 626 1.01e-13 70.9
MS.gene33689.t1 AT2G33170 30.357 168 101 4 73 225 890 1056 2.72e-13 69.7
MS.gene33689.t1 AT2G33170 30.357 168 101 4 73 225 890 1056 2.72e-13 69.7
MS.gene33689.t1 AT2G07040 32.323 198 109 8 71 247 399 592 3.67e-13 68.9
MS.gene33689.t1 AT4G36180 30.539 167 94 7 61 211 896 1056 4.69e-13 68.9
MS.gene33689.t1 AT2G27060 31.892 185 95 7 67 225 788 967 4.96e-13 68.9
MS.gene33689.t1 AT1G75640 33.333 168 89 8 61 211 894 1055 5.56e-13 68.6
MS.gene33689.t1 AT2G27060 31.892 185 95 7 67 225 695 874 6.44e-13 68.6
MS.gene33689.t1 AT1G69270 28.421 190 111 7 73 242 323 507 7.38e-13 68.2
MS.gene33689.t1 AT5G63930 29.032 186 97 6 81 242 879 1053 1.31e-12 67.4
MS.gene33689.t1 AT5G63930 29.032 186 97 6 81 242 815 989 1.44e-12 67.4
MS.gene33689.t1 AT3G49670 31.073 177 86 6 78 228 759 925 2.78e-12 66.6
MS.gene33689.t1 AT1G70130 32.394 142 82 4 73 201 397 537 4.73e-12 65.9
MS.gene33689.t1 AT3G02130 36.190 105 60 2 143 242 1016 1118 5.28e-12 65.9
MS.gene33689.t1 AT3G02130 36.190 105 60 2 143 242 999 1101 5.89e-12 65.5
MS.gene33689.t1 AT5G59270 28.177 181 96 4 73 228 414 585 6.30e-12 65.5
MS.gene33689.t1 AT5G59270 28.177 181 96 4 73 228 430 601 6.52e-12 65.5
MS.gene33689.t1 AT5G59270 28.177 181 96 4 73 228 411 582 6.84e-12 65.5
MS.gene33689.t1 AT1G08590 32.184 174 98 6 74 240 813 973 7.45e-12 65.5
MS.gene33689.t1 AT4G39400 27.835 194 106 6 73 241 945 1129 1.69e-11 64.3
MS.gene33689.t1 AT5G07620 25.123 203 116 4 71 247 140 332 1.98e-11 63.5
MS.gene33689.t1 AT2G35620 25.140 179 98 3 73 226 366 533 3.32e-11 63.2
MS.gene33689.t1 AT2G35620 25.140 179 98 3 73 226 366 533 3.32e-11 63.2
MS.gene33689.t1 AT2G35620 25.140 179 98 3 73 226 366 533 3.32e-11 63.2
MS.gene33689.t1 AT2G35620 25.140 179 98 3 73 226 366 533 3.32e-11 63.2
MS.gene33689.t1 AT2G02220 42.424 99 46 4 133 225 872 965 4.82e-11 62.8
MS.gene33689.t1 AT2G13800 26.866 201 111 5 55 228 321 512 5.84e-11 62.4
MS.gene33689.t1 AT2G13800 26.866 201 111 5 55 228 321 512 5.84e-11 62.4
MS.gene33689.t1 AT2G13800 26.866 201 111 5 55 228 204 395 6.03e-11 62.4
MS.gene33689.t1 AT2G13800 26.866 201 111 5 55 228 204 395 6.03e-11 62.4
MS.gene33689.t1 AT3G59700 28.994 169 101 6 73 225 401 566 7.60e-11 62.0
MS.gene33689.t1 AT5G65700 31.646 158 74 5 78 211 763 910 7.95e-11 62.4
MS.gene33689.t1 AT5G65700 31.646 158 74 5 78 211 763 910 7.95e-11 62.4

Find 52 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTTGGTGTTATCCTTT+TGG 0.201128 4.3:-84070279 MS.gene33689:CDS
TTCCATGCACTATATTCTTT+TGG 0.283746 4.3:+84070449 None:intergenic
ACAAGAAGCTTCTCTTCTTT+AGG 0.291032 4.3:+84071039 None:intergenic
GACAAATGAAGTGTTTGATT+TGG 0.323614 4.3:-84070171 MS.gene33689:CDS
ATGCCATTTGTTGGTTCTCC+TGG 0.362960 4.3:+84070236 None:intergenic
GAAGCTTCTGTAAATGAAAT+CGG 0.369501 4.3:-84070539 MS.gene33689:intron
CATTCATTGTTAAAGAAGAA+TGG 0.390717 4.3:-84070193 MS.gene33689:CDS
TTTAAGAAGTTCATCTCCTA+TGG 0.410729 4.3:+84070127 None:intergenic
GAACCTCGTTCCCCTTTGCT+TGG 0.413180 4.3:-84071512 MS.gene33689:CDS
GGCAAGTCCATGCCATTTGT+TGG 0.425256 4.3:+84070227 None:intergenic
GATTTGTACTCGGTGGGAAC+TGG 0.426192 4.3:-84071478 MS.gene33689:CDS
ACAAGGATGAAAATAGCAAT+TGG 0.434911 4.3:-84070502 MS.gene33689:CDS
ACAATGAATGCAACATATTG+AGG 0.440308 4.3:+84070206 None:intergenic
TTCTTTGTCTTTGAAAGCTC+CGG 0.445593 4.3:+84070326 None:intergenic
CACCTCAAGCAACATACAAT+TGG 0.458004 4.3:-84070422 MS.gene33689:CDS
CGAAAATGAAGCCAAGCAAA+GGG 0.468116 4.3:+84071501 None:intergenic
ATTGCTACAGCAGGAAGTCT+TGG 0.477792 4.3:-84070359 MS.gene33689:CDS
GCTGTAAACGTCGGTCTTTG+TGG 0.482246 4.3:+84070298 None:intergenic
AAGACCGACGTTTACAGCCT+TGG 0.482978 4.3:-84070293 MS.gene33689:CDS
TAAACGTCGGTCTTTGTGGT+AGG 0.487257 4.3:+84070302 None:intergenic
ATCACTATCTGTGATGTTGA+GGG 0.495900 4.3:-84071428 MS.gene33689:CDS
ATCTGTGATGTTGAGGGGCA+AGG 0.519133 4.3:-84071422 MS.gene33689:intron
CATCACTATCTGTGATGTTG+AGG 0.520950 4.3:-84071429 MS.gene33689:CDS
TACCAGTTAAAAGCTCCAAA+AGG 0.522393 4.3:+84070264 None:intergenic
CCGAAAATGAAGCCAAGCAA+AGG 0.523710 4.3:+84071500 None:intergenic
AGAAGTTCATCTCCTATGGT+TGG 0.529629 4.3:+84070131 None:intergenic
TCCTGCTGTAGCAATGATGT+TGG 0.533607 4.3:+84070367 None:intergenic
GATTTGGAACTCATGAGGGA+TGG 0.537502 4.3:-84070155 MS.gene33689:CDS
CCACCAGGAGAACCAACAAA+TGG 0.539629 4.3:-84070239 MS.gene33689:CDS
ACCAACATCATTGCTACAGC+AGG 0.542435 4.3:-84070368 MS.gene33689:CDS
CCATTTGTTGGTTCTCCTGG+TGG 0.548920 4.3:+84070239 None:intergenic
TGTAGCAATGATGTTGGTGT+TGG 0.550967 4.3:+84070373 None:intergenic
AACCAAAAGAATATAGTGCA+TGG 0.563084 4.3:-84070451 MS.gene33689:CDS
GTCTTTGATTACATGAGTAG+AGG 0.565999 4.3:-84071018 MS.gene33689:CDS
CTACTTAGTGCTTACTGCGA+AGG 0.571056 4.3:+84070980 None:intergenic
TGTTTGATTTGGAACTCATG+AGG 0.576156 4.3:-84070160 MS.gene33689:CDS
TACTGCGAAGGAATGATGCT+AGG 0.605148 4.3:+84070992 None:intergenic
AGGAGAACCAACAAATGGCA+TGG 0.605960 4.3:-84070234 MS.gene33689:CDS
TAAATGAAATCGGTTTCGAA+TGG 0.608924 4.3:-84070529 MS.gene33689:CDS
ATGAGGGATGGACCAACCAT+AGG 0.609052 4.3:-84070143 MS.gene33689:CDS
ATAGCAATTGGAATCGCCAA+TGG 0.612433 4.3:-84070490 MS.gene33689:CDS
GTGGAGGCAAGAGAGACCAT+TGG 0.612548 4.3:+84070474 None:intergenic
CGGTTTCGAATGGCCCAACA+AGG 0.612620 4.3:-84070519 MS.gene33689:CDS
GTTTGATTTGGAACTCATGA+GGG 0.628775 4.3:-84070159 MS.gene33689:CDS
GACCAATTGTATGTTGCTTG+AGG 0.629446 4.3:+84070420 None:intergenic
AAGTCTTGGATACAATGCAC+CGG 0.639160 4.3:-84070345 MS.gene33689:CDS
TCACTATCTGTGATGTTGAG+GGG 0.653665 4.3:-84071427 MS.gene33689:CDS
AAGCCAAGCAAAGGGGAACG+AGG 0.661699 4.3:+84071509 None:intergenic
AAGATAGATAAGAGTCAATG+TGG 0.664029 4.3:+84071540 None:intergenic
AACACCAAGGCTGTAAACGT+CGG 0.703747 4.3:+84070289 None:intergenic
GCTCCAAAAGGATAACACCA+AGG 0.710267 4.3:+84070276 None:intergenic
GAAAATGAAGCCAAGCAAAG+GGG 0.713672 4.3:+84071502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAACAAGTTTTAAAATCA+AGG - chr4.3:84070418-84070437 MS.gene33689:CDS 15.0%
!!! TCAACTTTGTATTATAATTT+TGG - chr4.3:84070876-84070895 MS.gene33689:intron 15.0%
!!! TTTAAAACTTGTTATAACTT+TGG + chr4.3:84070414-84070433 None:intergenic 15.0%
!! TTATGGACATTTATTAATGT+TGG - chr4.3:84070990-84071009 MS.gene33689:intron 20.0%
!!! AATGTTTTCTAAGTAAGTTT+TGG + chr4.3:84071094-84071113 None:intergenic 20.0%
! AAATATTTCAAGAGGAATTG+AGG - chr4.3:84070580-84070599 MS.gene33689:intron 25.0%
! AGTATAACAATCATATGATC+TGG + chr4.3:84070926-84070945 None:intergenic 25.0%
! CATATGTATGAATAACTTCT+AGG + chr4.3:84070470-84070489 None:intergenic 25.0%
! CATTCATTGTTAAAGAAGAA+TGG - chr4.3:84071524-84071543 MS.gene33689:CDS 25.0%
! CATTTATTAATGTTGGAACA+TGG - chr4.3:84070997-84071016 MS.gene33689:CDS 25.0%
! TAGATATGAAGAGTTCAAAA+TGG + chr4.3:84070333-84070352 None:intergenic 25.0%
! TCTACTTGAAATATTTCAAG+AGG - chr4.3:84070572-84070591 MS.gene33689:intron 25.0%
!! GAAATATTTCAAGTAGAATC+AGG + chr4.3:84070569-84070588 None:intergenic 25.0%
!! TTATAACTTTGGCGTTTTAT+TGG + chr4.3:84070403-84070422 None:intergenic 25.0%
AACCAAAAGAATATAGTGCA+TGG - chr4.3:84071266-84071285 MS.gene33689:intron 30.0%
AAGATAGATAAGAGTCAATG+TGG + chr4.3:84070180-84070199 None:intergenic 30.0%
ACAAGGATGAAAATAGCAAT+TGG - chr4.3:84071215-84071234 MS.gene33689:intron 30.0%
ACAATGAATGCAACATATTG+AGG + chr4.3:84071514-84071533 None:intergenic 30.0%
ACTATCCAATCTTGATTCAA+AGG - chr4.3:84071020-84071039 MS.gene33689:CDS 30.0%
CCATAATGATAATCCAAAGA+TGG + chr4.3:84070976-84070995 None:intergenic 30.0%
CCATCTTTGGATTATCATTA+TGG - chr4.3:84070973-84070992 MS.gene33689:intron 30.0%
GAAGCTTCTGTAAATGAAAT+CGG - chr4.3:84071178-84071197 MS.gene33689:intron 30.0%
TTTAAGAAGTTCATCTCCTA+TGG + chr4.3:84071593-84071612 None:intergenic 30.0%
! GACAAATGAAGTGTTTGATT+TGG - chr4.3:84071546-84071565 MS.gene33689:CDS 30.0%
! TAAATGAAATCGGTTTCGAA+TGG - chr4.3:84071188-84071207 MS.gene33689:intron 30.0%
! TTCATTTTCGGATTTGTACT+CGG - chr4.3:84070229-84070248 MS.gene33689:CDS 30.0%
! TTCCATGCACTATATTCTTT+TGG + chr4.3:84071271-84071290 None:intergenic 30.0%
! TTGTTGATTATATGTTCCAG+AGG - chr4.3:84070830-84070849 MS.gene33689:intron 30.0%
!!! AGTAAGTTTTGGTTTACTTG+CGG + chr4.3:84071083-84071102 None:intergenic 30.0%
!!! ATTGCTATTTTCATCCTTGT+TGG + chr4.3:84071215-84071234 None:intergenic 30.0%
!!! TTGCTATTTTCATCCTTGTT+GGG + chr4.3:84071214-84071233 None:intergenic 30.0%
ACAAGAAGCTTCTCTTCTTT+AGG + chr4.3:84070681-84070700 None:intergenic 35.0%
ACATATGCATGCTGCTAAAA+GGG - chr4.3:84070483-84070502 MS.gene33689:CDS 35.0%
AGGTTCAAGATAGTAAGCTT+GGG + chr4.3:84070661-84070680 None:intergenic 35.0%
ATCACTATCTGTGATGTTGA+GGG - chr4.3:84070289-84070308 MS.gene33689:CDS 35.0%
CTAGACCTTTGAATCAAGAT+TGG + chr4.3:84071028-84071047 None:intergenic 35.0%
GAAGACAGATATTCCATCTT+TGG - chr4.3:84070960-84070979 MS.gene33689:intron 35.0%
GACATGACTGGATTCAATAT+TGG + chr4.3:84070365-84070384 None:intergenic 35.0%
GTCTTTGATTACATGAGTAG+AGG - chr4.3:84070699-84070718 MS.gene33689:intron 35.0%
TACATATGCATGCTGCTAAA+AGG - chr4.3:84070482-84070501 MS.gene33689:CDS 35.0%
TACCAGTTAAAAGCTCCAAA+AGG + chr4.3:84071456-84071475 None:intergenic 35.0%
TAGATCAGAAAAGACATGAC+TGG + chr4.3:84070377-84070396 None:intergenic 35.0%
TAGGTTCAAGATAGTAAGCT+TGG + chr4.3:84070662-84070681 None:intergenic 35.0%
! AATTTTGGACAATCCGATCT+TGG - chr4.3:84070891-84070910 MS.gene33689:intron 35.0%
! TTCTTTGTCTTTGAAAGCTC+CGG + chr4.3:84071394-84071413 None:intergenic 35.0%
!! CTATATTCTTTTGGTTGTGG+AGG + chr4.3:84071262-84071281 None:intergenic 35.0%
!! GCACTATATTCTTTTGGTTG+TGG + chr4.3:84071265-84071284 None:intergenic 35.0%
!! GTTTGATTTGGAACTCATGA+GGG - chr4.3:84071558-84071577 MS.gene33689:CDS 35.0%
!! TGAATAACTTCTAGGATGCA+TGG + chr4.3:84070462-84070481 None:intergenic 35.0%
!! TGTTTGATTTGGAACTCATG+AGG - chr4.3:84071557-84071576 MS.gene33689:CDS 35.0%
!!! ATCCTTTTGGAGCTTTTAAC+TGG - chr4.3:84071451-84071470 MS.gene33689:CDS 35.0%
AAGTCTTGGATACAATGCAC+CGG - chr4.3:84071372-84071391 MS.gene33689:intron 40.0%
AATCACGCAATCATGTGATC+TGG + chr4.3:84071054-84071073 None:intergenic 40.0%
ACAATCCGATCTTGGTTCAA+TGG - chr4.3:84070899-84070918 MS.gene33689:intron 40.0%
ACTGAAACTGTGATATGCTG+AGG + chr4.3:84070531-84070550 None:intergenic 40.0%
AGAAGTTCATCTCCTATGGT+TGG + chr4.3:84071589-84071608 None:intergenic 40.0%
ATAGCAATTGGAATCGCCAA+TGG - chr4.3:84071227-84071246 MS.gene33689:intron 40.0%
CACCTCAAGCAACATACAAT+TGG - chr4.3:84071295-84071314 MS.gene33689:intron 40.0%
CATCACTATCTGTGATGTTG+AGG - chr4.3:84070288-84070307 MS.gene33689:CDS 40.0%
CGAAAATGAAGCCAAGCAAA+GGG + chr4.3:84070219-84070238 None:intergenic 40.0%
CTGGATTCAATATTGGCAGA+TGG + chr4.3:84070358-84070377 None:intergenic 40.0%
GAAAATGAAGCCAAGCAAAG+GGG + chr4.3:84070218-84070237 None:intergenic 40.0%
TCACTATCTGTGATGTTGAG+GGG - chr4.3:84070290-84070309 MS.gene33689:CDS 40.0%
TCCAGAGGATCATGATTAGA+AGG - chr4.3:84070845-84070864 MS.gene33689:intron 40.0%
TGTAGCAATGATGTTGGTGT+TGG + chr4.3:84071347-84071366 None:intergenic 40.0%
! AGGGTACGGTGTTAACATAA+TGG - chr4.3:84070502-84070521 MS.gene33689:CDS 40.0%
! ATTTTCGGATTTGTACTCGG+TGG - chr4.3:84070232-84070251 MS.gene33689:CDS 40.0%
! CCTTTGCTTGGCTTCATTTT+CGG - chr4.3:84070217-84070236 MS.gene33689:CDS 40.0%
! GACCAATTGTATGTTGCTTG+AGG + chr4.3:84071300-84071319 None:intergenic 40.0%
! TTTTCGGATTTGTACTCGGT+GGG - chr4.3:84070233-84070252 MS.gene33689:CDS 40.0%
!! CTTTTAACTGGTAAACCACC+AGG - chr4.3:84071463-84071482 MS.gene33689:CDS 40.0%
!!! GTTTTGGTTTACTTGCGGTT+AGG + chr4.3:84071078-84071097 None:intergenic 40.0%
AACACCAAGGCTGTAAACGT+CGG + chr4.3:84071431-84071450 None:intergenic 45.0%
ACCAACATCATTGCTACAGC+AGG - chr4.3:84071349-84071368 MS.gene33689:intron 45.0%
AGGAGAACCAACAAATGGCA+TGG - chr4.3:84071483-84071502 MS.gene33689:CDS 45.0%
ATTGCTACAGCAGGAAGTCT+TGG - chr4.3:84071358-84071377 MS.gene33689:intron 45.0%
CCGAAAATGAAGCCAAGCAA+AGG + chr4.3:84070220-84070239 None:intergenic 45.0%
CTACTTAGTGCTTACTGCGA+AGG + chr4.3:84070740-84070759 None:intergenic 45.0%
CTGGACCATTGAACCAAGAT+CGG + chr4.3:84070907-84070926 None:intergenic 45.0%
GCCTTCTAATCATGATCCTC+TGG + chr4.3:84070849-84070868 None:intergenic 45.0%
GCTCCAAAAGGATAACACCA+AGG + chr4.3:84071444-84071463 None:intergenic 45.0%
TAAACGTCGGTCTTTGTGGT+AGG + chr4.3:84071418-84071437 None:intergenic 45.0%
TACTGCGAAGGAATGATGCT+AGG + chr4.3:84070728-84070747 None:intergenic 45.0%
TCCTGCTGTAGCAATGATGT+TGG + chr4.3:84071353-84071372 None:intergenic 45.0%
TGCATGCTGCTAAAAGGGTA+CGG - chr4.3:84070488-84070507 MS.gene33689:CDS 45.0%
! GATTTGGAACTCATGAGGGA+TGG - chr4.3:84071562-84071581 MS.gene33689:CDS 45.0%
!! ATGCCATTTGTTGGTTCTCC+TGG + chr4.3:84071484-84071503 None:intergenic 45.0%
!!! CAGCCTTGGTGTTATCCTTT+TGG - chr4.3:84071438-84071457 MS.gene33689:CDS 45.0%
AAGACCGACGTTTACAGCCT+TGG - chr4.3:84071424-84071443 MS.gene33689:CDS 50.0%
ATCTGTGATGTTGAGGGGCA+AGG - chr4.3:84070295-84070314 MS.gene33689:CDS 50.0%
ATGAGGGATGGACCAACCAT+AGG - chr4.3:84071574-84071593 MS.gene33689:CDS 50.0%
CCACCAGGAGAACCAACAAA+TGG - chr4.3:84071478-84071497 MS.gene33689:CDS 50.0%
GCTGTAAACGTCGGTCTTTG+TGG + chr4.3:84071422-84071441 None:intergenic 50.0%
TGTTGAGGGGCAAGGTAAAG+AGG - chr4.3:84070303-84070322 MS.gene33689:CDS 50.0%
! GATTTGTACTCGGTGGGAAC+TGG - chr4.3:84070239-84070258 MS.gene33689:CDS 50.0%
! GGCAAGTCCATGCCATTTGT+TGG + chr4.3:84071493-84071512 None:intergenic 50.0%
!! CCATTTGTTGGTTCTCCTGG+TGG + chr4.3:84071481-84071500 None:intergenic 50.0%
AAGCCAAGCAAAGGGGAACG+AGG + chr4.3:84070211-84070230 None:intergenic 55.0%
CGGTTTCGAATGGCCCAACA+AGG - chr4.3:84071198-84071217 MS.gene33689:intron 55.0%
GAACCTCGTTCCCCTTTGCT+TGG - chr4.3:84070205-84070224 MS.gene33689:CDS 55.0%
GTGGAGGCAAGAGAGACCAT+TGG + chr4.3:84071246-84071265 None:intergenic 55.0%
TGAGGGGCAAGGTAAAGAGG+AGG - chr4.3:84070306-84070325 MS.gene33689:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 84070106 84071633 84070106 ID=MS.gene33689
chr4.3 mRNA 84070106 84071633 84070106 ID=MS.gene33689.t1;Parent=MS.gene33689
chr4.3 exon 84071423 84071633 84071423 ID=MS.gene33689.t1.exon1;Parent=MS.gene33689.t1
chr4.3 CDS 84071423 84071633 84071423 ID=cds.MS.gene33689.t1;Parent=MS.gene33689.t1
chr4.3 exon 84070995 84071075 84070995 ID=MS.gene33689.t1.exon2;Parent=MS.gene33689.t1
chr4.3 CDS 84070995 84071075 84070995 ID=cds.MS.gene33689.t1;Parent=MS.gene33689.t1
chr4.3 exon 84070106 84070557 84070106 ID=MS.gene33689.t1.exon3;Parent=MS.gene33689.t1
chr4.3 CDS 84070106 84070557 84070106 ID=cds.MS.gene33689.t1;Parent=MS.gene33689.t1
Gene Sequence

>MS.gene33689

ATGAAATTTGCATATCAACATGTATCAGCTTCAGAACACGATTTTCACAATAAGTTCAATGATTATAACGACCACATTGACTCTTATCTATCTTCTTCTGAACCTCGTTCCCCTTTGCTTGGCTTCATTTTCGGATTTGTACTCGGTGGGAACTGGTTAATTGTTGACATGTTAAAATTTAACATCACTATCTGTGATGTTGAGGGGCAAGGTAAAGAGGAGGACCATTTTGAACTCTTCATATCTACGCCATCTGCCAATATTGAATCCAGTCATGTCTTTTCTGATCTATAACCAATAAAACGCCAAAGTTATAACAAGTTTTAAAATCAAGGTAACAACACGTTTATCATCCATGCATCCTAGAAGTTATTCATACATATGCATGCTGCTAAAAGGGTACGGTGTTAACATAATGGATACCTCAGCATATCACAGTTTCAGTCAGATGATGTGATTGCCTGATTCTACTTGAAATATTTCAAGAGGAATTGAGGTGTGAATATTATTGTGTAAAATATATTTTACACTGTTATCATTGTGTGTCTTTTTCCCAAGCTTACTATCTTGAACCTAAAGAAGAGAAGCTTCTTGTCTTTGATTACATGAGTAGAGGAAGCCTAGCATCATTCCTTCGCAGTAAGCACTAAGTAGTTCTTAGACTTCATTTGAGTTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTAAAGCAATCACACATTGTTGATTATATGTTCCAGAGGATCATGATTAGAAGGCACATGTTTCAACTTTGTATTATAATTTTGGACAATCCGATCTTGGTTCAATGGTCCAGATCATATGATTGTTATACTAGTGAACAAGATTAGAAGACAGATATTCCATCTTTGGATTATCATTATGGACATTTATTAATGTTGGAACATGGACTATCCAATCTTGATTCAAAGGTCTAGACTCCAGATCACATGATTGCGTGATTTCCTAACCGCAAGTAAACCAAAACTTACTTAGAAAACATTGCTTTTATCTCTTAAATTTATATGATAATACTGATGTGATATTCAAATTTTTAAACATATATTTGAAGCTTCTGTAAATGAAATCGGTTTCGAATGGCCCAACAAGGATGAAAATAGCAATTGGAATCGCCAATGGTCTCTCTTGCCTCCACAACCAAAAGAATATAGTGCATGGAATTCTCACCTCAAGCAACATACAATTGGTCTTTCAAGACTAATGACAACTTCAGCCAACACCAACATCATTGCTACAGCAGGAAGTCTTGGATACAATGCACCGGAGCTTTCAAAGACAAAGAAACCTACCACAAAGACCGACGTTTACAGCCTTGGTGTTATCCTTTTGGAGCTTTTAACTGGTAAACCACCAGGAGAACCAACAAATGGCATGGACTTGCCTCAATATGTTGCATTCATTGTTAAAGAAGAATGGACAAATGAAGTGTTTGATTTGGAACTCATGAGGGATGGACCAACCATAGGAGATGAACTTCTTAAAATTAGCTTTGCATTGTGTTGA
Protein sequence

>MS.gene33689.t1

MKFAYQHVSASEHDFHNKFNDYNDHIDSYLSSSEPRSPLLGFIFGFVLGGNWLIVDMLKFNITICDVEGQAYYLEPKEEKLLVFDYMSRGSLASFLRTSVNEIGFEWPNKDENSNWNRQWSLLPPQPKEYSAWNSHLKQHTIGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLGVILLELLTGKPPGEPTNGMDLPQYVAFIVKEEWTNEVFDLELMRDGPTIGDELLKISFALC