AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33756

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33756.t1 MTR_4g089095 94.295 298 12 2 1 293 1 298 0.0 580
MS.gene33756.t1 MTR_4g089095 90.530 264 20 2 35 293 1 264 4.69e-143 403
MS.gene33756.t1 MTR_2g013370 58.361 305 84 14 1 293 1 274 4.27e-97 287
MS.gene33756.t1 MTR_4g088580 55.172 116 45 2 17 125 16 131 8.25e-31 119
MS.gene33756.t1 MTR_2g096740 41.436 181 83 6 50 227 62 222 1.36e-30 116
MS.gene33756.t1 MTR_2g096740 41.436 181 83 7 50 227 77 237 1.50e-30 117
MS.gene33756.t1 MTR_3g091820 67.105 76 20 2 29 103 26 97 6.32e-29 112
MS.gene33756.t1 MTR_8g479350 59.259 81 32 1 48 127 66 146 7.89e-29 113
MS.gene33756.t1 MTR_8g079060 64.103 78 26 2 46 121 25 102 4.52e-28 108
MS.gene33756.t1 MTR_2g093220 68.571 70 20 2 36 103 25 94 2.65e-27 107
MS.gene33756.t1 MTR_8g027295 55.422 83 36 1 37 118 11 93 3.08e-27 107
MS.gene33756.t1 MTR_8g068210 63.768 69 24 1 43 110 25 93 8.08e-27 107
MS.gene33756.t1 MTR_3g090430 55.556 99 42 2 9 105 9 107 1.65e-26 106
MS.gene33756.t1 MTR_2g014170 85.714 49 7 0 50 98 45 93 1.88e-26 105
MS.gene33756.t1 MTR_7g059400 60.000 75 29 1 30 103 56 130 3.99e-26 105
MS.gene33756.t1 MTR_4g022370 48.182 110 48 3 30 131 62 170 5.20e-26 105
MS.gene33756.t1 MTR_8g015840 74.545 55 14 0 46 100 16 70 5.29e-26 102
MS.gene33756.t1 MTR_7g024670 80.357 56 9 1 52 105 79 134 5.85e-26 105
MS.gene33756.t1 MTR_4g063780 58.228 79 31 1 50 126 75 153 7.23e-26 104
MS.gene33756.t1 MTR_4g461080 78.947 57 11 1 46 101 25 81 8.19e-26 103
MS.gene33756.t1 MTR_1g056810 51.087 92 44 1 51 141 13 104 1.46e-25 103
MS.gene33756.t1 MTR_4g109980 62.667 75 28 0 48 122 38 112 3.15e-25 102
MS.gene33756.t1 MTR_1g077600 60.606 66 25 1 39 103 32 97 4.71e-25 102
MS.gene33756.t1 MTR_1g077600 65.574 61 20 1 44 103 37 97 5.06e-25 101
MS.gene33756.t1 MTR_2g059540 81.633 49 9 0 50 98 31 79 5.25e-25 99.8
MS.gene33756.t1 MTR_3g077750 48.624 109 45 4 1 98 1 109 5.21e-24 99.8
MS.gene33756.t1 MTR_5g031440 72.549 51 14 0 48 98 41 91 8.21e-24 99.4
MS.gene33756.t1 MTR_3g435480 58.462 65 27 0 39 103 125 189 2.47e-23 99.4
MS.gene33756.t1 MTR_2g014060 61.905 63 24 0 36 98 11 73 5.24e-23 97.1
MS.gene33756.t1 MTR_2g016030 67.308 52 17 0 52 103 49 100 1.07e-22 92.4
MS.gene33756.t1 MTR_7g010950 69.231 52 16 0 52 103 137 188 1.34e-22 97.4
MS.gene33756.t1 MTR_4g082060 56.716 67 28 1 39 104 111 177 1.43e-22 97.4
MS.gene33756.t1 MTR_6g027450 47.475 99 36 2 7 104 61 144 1.59e-22 95.5
MS.gene33756.t1 MTR_7g086780 41.379 116 64 2 10 121 56 171 2.14e-22 96.7
MS.gene33756.t1 MTR_6g012450 66.667 54 18 0 50 103 136 189 2.84e-22 96.7
MS.gene33756.t1 MTR_6g027460 69.643 56 16 1 50 104 96 151 4.62e-22 95.1
MS.gene33756.t1 MTR_5g041400 39.130 115 63 2 38 145 105 219 5.14e-22 94.7
MS.gene33756.t1 MTR_5g041420 53.030 66 31 0 39 104 127 192 1.02e-21 93.2
MS.gene33756.t1 MTR_8g044220 65.455 55 18 1 50 103 118 172 1.80e-21 94.0
MS.gene33756.t1 MTR_5g041380 41.667 108 60 2 38 143 113 219 3.44e-21 92.4
MS.gene33756.t1 MTR_5g041530 53.030 66 31 0 39 104 129 194 3.64e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33756.t1 AT1G28310 81.356 59 10 1 50 107 27 85 1.59e-29 114
MS.gene33756.t1 AT3G55370 41.081 185 90 6 50 227 76 248 1.85e-29 114
MS.gene33756.t1 AT3G55370 41.081 185 90 6 50 227 76 248 2.17e-29 114
MS.gene33756.t1 AT1G28310 81.356 59 10 1 50 107 51 109 2.38e-29 114
MS.gene33756.t1 AT3G55370 41.081 185 90 6 50 227 121 293 3.52e-29 114
MS.gene33756.t1 AT1G51700 61.842 76 28 1 37 112 21 95 2.10e-28 108
MS.gene33756.t1 AT5G66940 54.167 96 42 2 23 118 6 99 2.93e-28 108
MS.gene33756.t1 AT5G60850 69.863 73 21 1 50 121 51 123 4.03e-28 110
MS.gene33756.t1 AT5G65590 53.933 89 34 2 28 109 13 101 2.18e-27 108
MS.gene33756.t1 AT5G60200 80.000 55 10 1 50 103 55 109 4.09e-27 106
MS.gene33756.t1 AT1G07640 47.368 114 44 2 8 105 21 134 5.08e-27 108
MS.gene33756.t1 AT3G50410 72.581 62 16 1 46 106 26 87 5.24e-27 106
MS.gene33756.t1 AT1G07640 47.368 114 44 2 8 105 29 142 5.60e-27 108
MS.gene33756.t1 AT1G07640 60.811 74 27 1 34 105 5 78 8.68e-27 106
MS.gene33756.t1 AT3G21270 73.684 57 15 0 50 106 29 85 3.44e-26 102
MS.gene33756.t1 AT2G28510 75.862 58 13 1 47 103 45 102 4.01e-26 104
MS.gene33756.t1 AT3G61850 70.492 61 17 1 48 107 60 120 6.62e-26 103
MS.gene33756.t1 AT3G61850 70.492 61 17 1 48 107 60 120 6.62e-26 103
MS.gene33756.t1 AT3G61850 70.492 61 17 1 48 107 72 132 7.00e-26 104
MS.gene33756.t1 AT3G45610 61.333 75 21 2 48 121 38 105 7.94e-26 102
MS.gene33756.t1 AT2G37590 57.534 73 30 1 34 105 73 145 8.72e-26 104
MS.gene33756.t1 AT3G61850 70.492 61 17 1 48 107 60 120 9.61e-26 104
MS.gene33756.t1 AT3G61850 70.492 61 17 1 48 107 72 132 1.15e-25 104
MS.gene33756.t1 AT2G28810 65.079 63 22 0 36 98 63 125 2.14e-25 103
MS.gene33756.t1 AT2G28810 65.079 63 22 0 36 98 80 142 2.31e-25 103
MS.gene33756.t1 AT4G24060 62.121 66 24 1 39 103 42 107 3.83e-25 103
MS.gene33756.t1 AT5G02460 76.364 55 12 1 50 103 95 149 5.21e-25 103
MS.gene33756.t1 AT4G38000 71.698 53 15 0 50 102 41 93 1.79e-24 99.4
MS.gene33756.t1 AT5G62430 47.872 94 46 1 19 109 20 113 3.10e-24 99.8
MS.gene33756.t1 AT4G21050 59.701 67 26 1 52 117 26 92 5.83e-24 97.1
MS.gene33756.t1 AT1G47655 73.077 52 14 0 47 98 26 77 6.52e-24 97.1
MS.gene33756.t1 AT3G52440 72.727 55 14 1 52 105 27 81 6.58e-24 97.8
MS.gene33756.t1 AT2G46590 76.000 50 12 0 48 97 66 115 6.86e-24 100
MS.gene33756.t1 AT2G46590 76.000 50 12 0 48 97 78 127 8.01e-24 99.8
MS.gene33756.t1 AT3G52440 72.727 55 14 1 52 105 46 100 8.86e-24 97.8
MS.gene33756.t1 AT4G00940 67.213 61 19 1 48 107 66 126 1.05e-23 98.2
MS.gene33756.t1 AT4G00940 67.213 61 19 1 48 107 66 126 1.05e-23 98.2
MS.gene33756.t1 AT4G00940 67.213 61 19 1 48 107 66 126 1.05e-23 98.2
MS.gene33756.t1 AT1G21340 69.643 56 16 1 52 106 40 95 1.13e-23 97.4
MS.gene33756.t1 AT3G47500 70.370 54 16 0 50 103 110 163 2.77e-23 99.4
MS.gene33756.t1 AT1G69570 41.270 126 63 3 52 167 134 258 3.25e-23 98.6
MS.gene33756.t1 AT5G39660 58.462 65 27 0 39 103 127 191 4.96e-23 98.6
MS.gene33756.t1 AT5G39660 58.462 65 27 0 39 103 127 191 4.96e-23 98.6
MS.gene33756.t1 AT5G39660 58.462 65 27 0 39 103 127 191 4.96e-23 98.6
MS.gene33756.t1 AT1G64620 60.000 60 24 0 39 98 38 97 6.59e-23 97.1
MS.gene33756.t1 AT1G29160 67.308 52 17 0 52 103 64 115 1.49e-22 92.4
MS.gene33756.t1 AT2G34140 64.815 54 19 0 50 103 58 111 1.50e-22 92.0
MS.gene33756.t1 AT5G62940 78.723 47 10 0 52 98 75 121 1.63e-22 96.3
MS.gene33756.t1 AT1G26790 66.667 54 18 0 50 103 111 164 2.35e-22 95.9
MS.gene33756.t1 AT4G21040 61.667 60 21 1 52 109 27 86 1.53e-21 91.3
MS.gene33756.t1 AT4G21080 54.412 68 29 1 52 117 27 94 9.29e-21 89.4
MS.gene33756.t1 AT4G21030 60.870 46 18 0 52 97 23 68 5.22e-13 67.0

Find 58 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTAGTGCTTGGAATTAT+TGG 0.214119 4.4:-23546718 None:intergenic
TCTTCCAATGTTTATTACTA+TGG 0.226715 4.4:+23546670 MS.gene33756:CDS
CTGATCTAAAGAATCCTTAT+TGG 0.245243 4.4:+23546842 MS.gene33756:CDS
CTTATTAGAATCTCAAGATT+TGG 0.267364 4.4:+23546063 MS.gene33756:CDS
AAAGTTCAAAGTATTGGAAT+TGG 0.333779 4.4:+23546794 MS.gene33756:CDS
CAAATCTTGAGATTCTAATA+AGG 0.337572 4.4:-23546062 None:intergenic
TTGGGAAGACATTGATTCAT+TGG 0.357990 4.4:+23546813 MS.gene33756:CDS
ACATCAGAATCATCCCAATA+AGG 0.361802 4.4:-23546856 None:intergenic
GTTGGTAATGGTAATGTTAA+TGG 0.368454 4.4:+23546544 MS.gene33756:CDS
CTCATTAGATGATGAGGCTT+TGG 0.369809 4.4:-23546091 None:intergenic
TTATCAGAAAACAAAGGTTT+TGG 0.373479 4.4:+23546520 MS.gene33756:CDS
TGATCTAAAGAATCCTTATT+GGG 0.381365 4.4:+23546843 MS.gene33756:CDS
TTTCTAGCAGTGGACTTGAT+TGG 0.385715 4.4:+23546032 MS.gene33756:CDS
AATGGCATGTTTACTAGTAC+TGG 0.395485 4.4:+23546562 MS.gene33756:CDS
TTCTTTCTGCCACCACCAAC+AGG 0.404107 4.4:-23546286 None:intergenic
AAGTTCAAAGTATTGGAATT+GGG 0.421160 4.4:+23546795 MS.gene33756:CDS
AAAAGAGCTTGAGGTTGAAA+AGG 0.429717 4.4:-23546629 None:intergenic
CATGGGTTTGAGTTCTAAGC+AGG 0.458863 4.4:+23546006 None:intergenic
GCTATTCATATTTGTAATTG+AGG 0.463164 4.4:-23546380 None:intergenic
TCTTACAAGCTCTACAGAAA+TGG 0.464712 4.4:-23546228 None:intergenic
GCATGGAAAGTTCAAAGTAT+TGG 0.482582 4.4:+23546788 MS.gene33756:CDS
AGAGCTTGATATAGAGATGA+AGG 0.482587 4.4:-23546451 None:intergenic
CCACCACTTGTTGATGCTGC+TGG 0.497067 4.4:-23546766 None:intergenic
GTGTTTGTTGAATCACATCT+TGG 0.501929 4.4:-23546163 None:intergenic
AGTAGTAGCTATGGTGGTGG+TGG 0.502733 4.4:-23546347 None:intergenic
GTGTTAGTGCAGCTAGTGCT+TGG 0.509552 4.4:-23546727 None:intergenic
CTACGCAATGTTCCTGTTGG+TGG 0.512399 4.4:+23546274 MS.gene33756:CDS
AAAGAGCTTGAGGTTGAAAA+GGG 0.516394 4.4:-23546628 None:intergenic
TTCTGTTGTAGAAGCAAAGA+TGG 0.517894 4.4:-23546484 None:intergenic
CGCAATGTTCCTGTTGGTGG+TGG 0.518071 4.4:+23546277 MS.gene33756:CDS
TGTAAGAGACACTGGACTAA+AGG 0.521063 4.4:+23546244 MS.gene33756:CDS
AAGCAGGTTATTTCTAGCAG+TGG 0.536340 4.4:+23546022 MS.gene33756:CDS
GATGCTGCTGGTATCTCCCA+TGG 0.542943 4.4:-23546754 None:intergenic
GTGGTGGTGGAAGAAGAAAC+TGG 0.552267 4.4:-23546334 None:intergenic
GTAGAGCTTGTAAGAGACAC+TGG 0.557178 4.4:+23546236 MS.gene33756:CDS
GGTTGAAAAGGGAAAGAGCA+TGG 0.558342 4.4:-23546617 None:intergenic
AGCATCAACAAGTGGTGGCA+TGG 0.561290 4.4:+23546771 MS.gene33756:CDS
CTCTCCATAGTAATAAACAT+TGG 0.562058 4.4:-23546674 None:intergenic
GAAGAAGAAACTGGTGTGGT+TGG 0.563149 4.4:-23546325 None:intergenic
ATTCAAACACCTCTTCAAGT+TGG 0.568059 4.4:+23546412 MS.gene33756:CDS
GGTGCAAGTAGTAGTAGCTA+TGG 0.572305 4.4:-23546356 None:intergenic
AGTTGTGTCAAAAGAGCTTG+AGG 0.572542 4.4:-23546638 None:intergenic
GCTGCACTAACACAAAGCCA+TGG 0.590846 4.4:+23546737 MS.gene33756:CDS
CAATGTTTATTACTATGGAG+AGG 0.597791 4.4:+23546675 MS.gene33756:CDS
ACTCTACGCAATGTTCCTGT+TGG 0.603022 4.4:+23546271 MS.gene33756:CDS
AAGAGACACTGGACTAAAGG+TGG 0.607478 4.4:+23546247 MS.gene33756:CDS
ATTCATATTTGTAATTGAGG+TGG 0.614882 4.4:-23546377 None:intergenic
CTGCACTAACACAAAGCCAT+GGG 0.626297 4.4:+23546738 MS.gene33756:CDS
GTGGTGGCAGAAAGAATAAG+AGG 0.637344 4.4:+23546293 MS.gene33756:CDS
CCAGCAGCATCAACAAGTGG+TGG 0.642482 4.4:+23546766 MS.gene33756:CDS
AATAACTTATCAGAAAACAA+AGG 0.648214 4.4:+23546514 MS.gene33756:CDS
GCAAGTAGTAGTAGCTATGG+TGG 0.655958 4.4:-23546353 None:intergenic
TACAAATATGAATAGCAACA+TGG 0.667766 4.4:+23546387 MS.gene33756:CDS
AGTAGTAGTAGCTATGGTGG+TGG 0.670325 4.4:-23546350 None:intergenic
ATACCAGCAGCATCAACAAG+TGG 0.686074 4.4:+23546763 MS.gene33756:CDS
TGTTGTAGAAGCAAAGATGG+TGG 0.693926 4.4:-23546481 None:intergenic
CAAGCTCTACAGAAATGGCG+AGG 0.695596 4.4:-23546223 None:intergenic
GGTGGAAGAAGAAACTGGTG+TGG 0.714166 4.4:-23546329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTTATCAGAAAACAA+AGG + chr4.4:23546514-23546533 MS.gene33756:CDS 20.0%
! ATTCATATTTGTAATTGAGG+TGG - chr4.4:23546380-23546399 None:intergenic 25.0%
! CAAATCTTGAGATTCTAATA+AGG - chr4.4:23546065-23546084 None:intergenic 25.0%
! CTTATTAGAATCTCAAGATT+TGG + chr4.4:23546063-23546082 MS.gene33756:CDS 25.0%
! GCTATTCATATTTGTAATTG+AGG - chr4.4:23546383-23546402 None:intergenic 25.0%
! TACAAATATGAATAGCAACA+TGG + chr4.4:23546387-23546406 MS.gene33756:CDS 25.0%
! TCTTCCAATGTTTATTACTA+TGG + chr4.4:23546670-23546689 MS.gene33756:CDS 25.0%
! TGATCTAAAGAATCCTTATT+GGG + chr4.4:23546843-23546862 MS.gene33756:CDS 25.0%
!! TTATCAGAAAACAAAGGTTT+TGG + chr4.4:23546520-23546539 MS.gene33756:CDS 25.0%
!!! AAAGTTCAAAGTATTGGAAT+TGG + chr4.4:23546794-23546813 MS.gene33756:CDS 25.0%
!!! AAGTTCAAAGTATTGGAATT+GGG + chr4.4:23546795-23546814 MS.gene33756:CDS 25.0%
CAATGTTTATTACTATGGAG+AGG + chr4.4:23546675-23546694 MS.gene33756:CDS 30.0%
CTCTCCATAGTAATAAACAT+TGG - chr4.4:23546677-23546696 None:intergenic 30.0%
CTGATCTAAAGAATCCTTAT+TGG + chr4.4:23546842-23546861 MS.gene33756:CDS 30.0%
! TGTTTTCTCATTAGATGATG+AGG - chr4.4:23546100-23546119 None:intergenic 30.0%
!! GTTGGTAATGGTAATGTTAA+TGG + chr4.4:23546544-23546563 MS.gene33756:CDS 30.0%
AAAAGAGCTTGAGGTTGAAA+AGG - chr4.4:23546632-23546651 None:intergenic 35.0%
AAAGAGCTTGAGGTTGAAAA+GGG - chr4.4:23546631-23546650 None:intergenic 35.0%
AATGGCATGTTTACTAGTAC+TGG + chr4.4:23546562-23546581 MS.gene33756:CDS 35.0%
ACATCAGAATCATCCCAATA+AGG - chr4.4:23546859-23546878 None:intergenic 35.0%
AGAGCTTGATATAGAGATGA+AGG - chr4.4:23546454-23546473 None:intergenic 35.0%
ATTCAAACACCTCTTCAAGT+TGG + chr4.4:23546412-23546431 MS.gene33756:CDS 35.0%
GCATGGAAAGTTCAAAGTAT+TGG + chr4.4:23546788-23546807 MS.gene33756:CDS 35.0%
TCTTACAAGCTCTACAGAAA+TGG - chr4.4:23546231-23546250 None:intergenic 35.0%
TTCTGTTGTAGAAGCAAAGA+TGG - chr4.4:23546487-23546506 None:intergenic 35.0%
! GTGTTTGTTGAATCACATCT+TGG - chr4.4:23546166-23546185 None:intergenic 35.0%
! TTTTGATCACCAACTTGAAG+AGG - chr4.4:23546424-23546443 None:intergenic 35.0%
!! AGCATGGTTTGATTTTGATG+AGG - chr4.4:23546604-23546623 None:intergenic 35.0%
!! GAAAACAAAGGTTTTGGTGT+TGG + chr4.4:23546526-23546545 MS.gene33756:CDS 35.0%
!! TGGTTTGATTTTGATGAGGA+AGG - chr4.4:23546600-23546619 None:intergenic 35.0%
!! TTGGGAAGACATTGATTCAT+TGG + chr4.4:23546813-23546832 MS.gene33756:CDS 35.0%
!!! AAAGGTTTTGGTGTTGGTAA+TGG + chr4.4:23546532-23546551 MS.gene33756:CDS 35.0%
AGTTGTGTCAAAAGAGCTTG+AGG - chr4.4:23546641-23546660 None:intergenic 40.0%
CAGCTAGTGCTTGGAATTAT+TGG - chr4.4:23546721-23546740 None:intergenic 40.0%
CTCATTAGATGATGAGGCTT+TGG - chr4.4:23546094-23546113 None:intergenic 40.0%
TGTAAGAGACACTGGACTAA+AGG + chr4.4:23546244-23546263 MS.gene33756:CDS 40.0%
TGTTGTAGAAGCAAAGATGG+TGG - chr4.4:23546484-23546503 None:intergenic 40.0%
! TTTCTAGCAGTGGACTTGAT+TGG + chr4.4:23546032-23546051 MS.gene33756:CDS 40.0%
!! AAGCAGGTTATTTCTAGCAG+TGG + chr4.4:23546022-23546041 MS.gene33756:CDS 40.0%
AAGAGACACTGGACTAAAGG+TGG + chr4.4:23546247-23546266 MS.gene33756:CDS 45.0%
ACTCTACGCAATGTTCCTGT+TGG + chr4.4:23546271-23546290 MS.gene33756:CDS 45.0%
AGTAGTAGTAGCTATGGTGG+TGG - chr4.4:23546353-23546372 None:intergenic 45.0%
ATACCAGCAGCATCAACAAG+TGG + chr4.4:23546763-23546782 MS.gene33756:CDS 45.0%
CTGCACTAACACAAAGCCAT+GGG + chr4.4:23546738-23546757 MS.gene33756:CDS 45.0%
GAAGAAGAAACTGGTGTGGT+TGG - chr4.4:23546328-23546347 None:intergenic 45.0%
GCAAGTAGTAGTAGCTATGG+TGG - chr4.4:23546356-23546375 None:intergenic 45.0%
GGTGCAAGTAGTAGTAGCTA+TGG - chr4.4:23546359-23546378 None:intergenic 45.0%
GGTTGAAAAGGGAAAGAGCA+TGG - chr4.4:23546620-23546639 None:intergenic 45.0%
GTAGAGCTTGTAAGAGACAC+TGG + chr4.4:23546236-23546255 MS.gene33756:CDS 45.0%
GTGGTGGCAGAAAGAATAAG+AGG + chr4.4:23546293-23546312 MS.gene33756:CDS 45.0%
AGCATCAACAAGTGGTGGCA+TGG + chr4.4:23546771-23546790 MS.gene33756:CDS 50.0%
CAAGCTCTACAGAAATGGCG+AGG - chr4.4:23546226-23546245 None:intergenic 50.0%
CTACGCAATGTTCCTGTTGG+TGG + chr4.4:23546274-23546293 MS.gene33756:CDS 50.0%
GCTGCACTAACACAAAGCCA+TGG + chr4.4:23546737-23546756 MS.gene33756:CDS 50.0%
GGTGGAAGAAGAAACTGGTG+TGG - chr4.4:23546332-23546351 None:intergenic 50.0%
GTGTTAGTGCAGCTAGTGCT+TGG - chr4.4:23546730-23546749 None:intergenic 50.0%
TTCTTTCTGCCACCACCAAC+AGG - chr4.4:23546289-23546308 None:intergenic 50.0%
!! AGTAGTAGCTATGGTGGTGG+TGG - chr4.4:23546350-23546369 None:intergenic 50.0%
!! GTGGTGGTGGAAGAAGAAAC+TGG - chr4.4:23546337-23546356 None:intergenic 50.0%
CCAGCAGCATCAACAAGTGG+TGG + chr4.4:23546766-23546785 MS.gene33756:CDS 55.0%
GATGCTGCTGGTATCTCCCA+TGG - chr4.4:23546757-23546776 None:intergenic 55.0%
! CCACCACTTGTTGATGCTGC+TGG - chr4.4:23546769-23546788 None:intergenic 55.0%
! CGCAATGTTCCTGTTGGTGG+TGG + chr4.4:23546277-23546296 MS.gene33756:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 23546007 23546888 23546007 ID=MS.gene33756
chr4.4 mRNA 23546007 23546888 23546007 ID=MS.gene33756.t1;Parent=MS.gene33756
chr4.4 exon 23546007 23546888 23546007 ID=MS.gene33756.t1.exon1;Parent=MS.gene33756.t1
chr4.4 CDS 23546007 23546888 23546007 ID=cds.MS.gene33756.t1;Parent=MS.gene33756.t1
Gene Sequence

>MS.gene33756

ATGGGTTTGAGTTCTAAGCAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTAGAATCTCAAGATTTGGAACTTCCAAAGCCTCATCATCTAATGAGAAAACAACAACAGCAACAAACTCAGCAACAAGCAGAACATTTGAACTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAGTCTCAACCTCGCCATTTCTGTAGAGCTTGTAAGAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGAAAGAATAAGAGGATCAAGAAACCAACCACACCAGTTTCTTCTTCCACCACCACCATAGCTACTACTACTTGCACCACCTCAATTACAAATATGAATAGCAACATGGCAATTCAAACACCTCTTCAAGTTGGTGATCAAAAAAGCATTCCTTCATCTCTATATCAAGCTCTCATTCATCCACCATCTTTGCTTCTACAACAGAATATGATGAATAACTTATCAGAAAACAAAGGTTTTGGTGTTGGTAATGGTAATGTTAATGGCATGTTTACTAGTACTGGTTCAACTTTGCACCTTCCTCATCAAAATCAAACCATGCTCTTTCCCTTTTCAACCTCAAGCTCTTTTGACACAACTACTTGTTCATCTTCCAATGTTTATTACTATGGAGAGGAGTTCAAAACAATAGAAGAACCAATAATTCCAAGCACTAGCTGCACTAACACAAAGCCATGGGAGATACCAGCAGCATCAACAAGTGGTGGCATGGAAAGTTCAAAGTATTGGAATTGGGAAGACATTGATTCATTGGTTTCAACTGATCTAAAGAATCCTTATTGGGATGATTCTGATGTCAAACCTTGA
Protein sequence

>MS.gene33756.t1

MGLSSKQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQTQQQAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRIKKPTTPVSSSTTTIATTTCTTSITNMNSNMAIQTPLQVGDQKSIPSSLYQALIHPPSLLLQQNMMNNLSENKGFGVGNGNVNGMFTSTGSTLHLPHQNQTMLFPFSTSSSFDTTTCSSSNVYYYGEEFKTIEEPIIPSTSCTNTKPWEIPAASTSGGMESSKYWNWEDIDSLVSTDLKNPYWDDSDVKP