Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33826.t1 | KEH31034.1 | 83.5 | 297 | 26 | 2 | 1 | 297 | 1 | 274 | 8.60E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33826.t1 | Q1PFR7 | 36.1 | 166 | 95 | 3 | 45 | 199 | 100 | 265 | 6.2e-19 | 96.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33826.t1 | A0A072UMM3 | 83.5 | 297 | 26 | 2 | 1 | 297 | 1 | 274 | 6.2e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene33826.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33826.t1 | MTR_4g088605 | 83.165 | 297 | 27 | 2 | 1 | 297 | 1 | 274 | 5.27e-170 | 472 |
| MS.gene33826.t1 | MTR_7g083700 | 34.483 | 174 | 99 | 6 | 98 | 268 | 119 | 280 | 3.25e-19 | 86.3 |
| MS.gene33826.t1 | MTR_7g059330 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 9.26e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33826.t1 | AT1G28300 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.73e-25 | 102 |
| MS.gene33826.t1 | AT3G24650 | 34.783 | 161 | 94 | 4 | 100 | 256 | 566 | 719 | 4.31e-19 | 87.8 |
| MS.gene33826.t1 | AT3G26790 | 35.294 | 119 | 75 | 2 | 98 | 214 | 84 | 202 | 5.21e-19 | 85.9 |
Find 60 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4.4:-24228250 | MS.gene33826:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4.4:-24228991 | MS.gene33826:intron |
| AGGTGACATTGCAGTATTAT+TGG | 0.262098 | 4.4:+24228191 | None:intergenic |
| TACTGCAATGTCACCTATAT+TGG | 0.265257 | 4.4:-24228184 | MS.gene33826:CDS |
| TTGCAGTATTATTGGTTTCT+TGG | 0.266997 | 4.4:+24228199 | None:intergenic |
| AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 4.4:+24229801 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.347184 | 4.4:+24228200 | None:intergenic |
| TTTACAGTCACCTTTCCATC+TGG | 0.356987 | 4.4:+24229770 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4.4:+24228211 | None:intergenic |
| TATATTGGACCATACCGTTT+TGG | 0.402644 | 4.4:-24228169 | MS.gene33826:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4.4:+24228256 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4.4:-24228968 | MS.gene33826:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4.4:+24229169 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4.4:+24229164 | None:intergenic |
| AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 4.4:+24229802 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4.4:-24229172 | MS.gene33826:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4.4:+24228829 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4.4:+24228216 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4.4:-24228819 | MS.gene33826:CDS |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4.4:+24229163 | None:intergenic |
| AAAACGGTATGGTCCAATAT+AGG | 0.437137 | 4.4:+24228171 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4.4:-24229632 | MS.gene33826:CDS |
| ACTTTATTCCTCTTCTCTGA+TGG | 0.466086 | 4.4:-24230023 | MS.gene33826:CDS |
| ATCATTACCATCTGCCAAAA+CGG | 0.475707 | 4.4:+24228155 | None:intergenic |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4.4:-24229129 | MS.gene33826:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4.4:-24228958 | MS.gene33826:intron |
| TCCTCAACTTGGAGTTGAAA+GGG | 0.488533 | 4.4:-24229966 | MS.gene33826:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4.4:+24228219 | None:intergenic |
| CTTTATTCCTCTTCTCTGAT+GGG | 0.493478 | 4.4:-24230022 | MS.gene33826:CDS |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4.4:-24228808 | MS.gene33826:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 4.4:-24228832 | MS.gene33826:CDS |
| TTACAGTCACCTTTCCATCT+GGG | 0.507868 | 4.4:+24229771 | None:intergenic |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4.4:+24229165 | None:intergenic |
| CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4.4:+24230060 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4.4:+24228303 | None:intergenic |
| CTCCTCAACTTGGAGTTGAA+AGG | 0.517571 | 4.4:-24229967 | MS.gene33826:CDS |
| ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4.4:+24230061 | None:intergenic |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4.4:+24229986 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.533290 | 4.4:-24229977 | MS.gene33826:CDS |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4.4:+24228273 | None:intergenic |
| TACCATCTGCCAAAACGGTA+TGG | 0.545052 | 4.4:+24228160 | None:intergenic |
| TCCCTTTCAACTCCAAGTTG+AGG | 0.546205 | 4.4:+24229965 | None:intergenic |
| CGATGAACAACAAAGCAGCT+TGG | 0.554733 | 4.4:-24228115 | MS.gene33826:CDS |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4.4:-24229203 | MS.gene33826:intron |
| ACTTGGAGTTGAAAGGGAAG+AGG | 0.563033 | 4.4:-24229960 | MS.gene33826:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.578069 | 4.4:+24230031 | None:intergenic |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 4.4:-24228831 | MS.gene33826:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4.4:+24228260 | None:intergenic |
| GGCTTGTGATCTATCGACAC+TGG | 0.594889 | 4.4:-24228334 | MS.gene33826:CDS |
| ACTTTGTCCCATCAGAGAAG+AGG | 0.602953 | 4.4:+24230015 | None:intergenic |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4.4:-24228965 | MS.gene33826:CDS |
| GCAGATGGTAATGATGGTGG+TGG | 0.618739 | 4.4:-24228147 | MS.gene33826:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4.4:-24229171 | MS.gene33826:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4.4:-24229910 | MS.gene33826:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4.4:-24228304 | MS.gene33826:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4.4:-24228309 | MS.gene33826:CDS |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4.4:-24229612 | MS.gene33826:intron |
| TTGGCAGATGGTAATGATGG+TGG | 0.656936 | 4.4:-24228150 | MS.gene33826:CDS |
| TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4.4:+24230045 | None:intergenic |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4.4:+24229600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTGTTCTTT+TGG | - | chr4.4:24228871-24228890 | MS.gene33826:intron | 10.0% |
| !!! | TTTTTTATAAATCATAACAA+CGG | + | chr4.4:24228640-24228659 | None:intergenic | 10.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | + | chr4.4:24228639-24228658 | None:intergenic | 15.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | - | chr4.4:24229161-24229180 | MS.gene33826:CDS | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | - | chr4.4:24228990-24229009 | MS.gene33826:intron | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | + | chr4.4:24229542-24229561 | None:intergenic | 20.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | + | chr4.4:24230056-24230075 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | - | chr4.4:24229879-24229898 | MS.gene33826:CDS | 25.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | - | chr4.4:24228195-24228214 | MS.gene33826:CDS | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | - | chr4.4:24229265-24229284 | MS.gene33826:intron | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | - | chr4.4:24228401-24228420 | MS.gene33826:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | - | chr4.4:24229266-24229285 | MS.gene33826:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | + | chr4.4:24229543-24229562 | None:intergenic | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | + | chr4.4:24229707-24229726 | None:intergenic | 25.0% |
| AAACCATTACAAACTATGCA+TGG | - | chr4.4:24229297-24229316 | MS.gene33826:intron | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | + | chr4.4:24229204-24229223 | None:intergenic | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | - | chr4.4:24229298-24229317 | MS.gene33826:intron | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | - | chr4.4:24229164-24229183 | MS.gene33826:CDS | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | - | chr4.4:24228830-24228849 | MS.gene33826:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | + | chr4.4:24229113-24229132 | None:intergenic | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | + | chr4.4:24229604-24229623 | None:intergenic | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | - | chr4.4:24229000-24229019 | MS.gene33826:intron | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | + | chr4.4:24228146-24228165 | None:intergenic | 30.0% | |
| GTATAAACTGGAAATTCCAT+AGG | - | chr4.4:24229124-24229143 | MS.gene33826:CDS | 30.0% | |
| TACCATTAATCCAATACCTA+TGG | + | chr4.4:24229143-24229162 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | + | chr4.4:24229876-24229895 | None:intergenic | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | - | chr4.4:24228920-24228939 | MS.gene33826:intron | 30.0% | |
| TGAGGACGAACTTAAAAATT+TGG | - | chr4.4:24229339-24229358 | MS.gene33826:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | - | chr4.4:24228919-24228938 | MS.gene33826:intron | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | - | chr4.4:24229112-24229131 | MS.gene33826:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | - | chr4.4:24229229-24229248 | MS.gene33826:intron | 30.0% |
| ! | TGTTTCAGTTCTCATGATTT+TGG | - | chr4.4:24229228-24229247 | MS.gene33826:intron | 30.0% |
| !! | TGCAGTATTATTGGTTTCTT+GGG | + | chr4.4:24229932-24229951 | None:intergenic | 30.0% |
| !! | TTCCATAGGTATTGGATTAA+TGG | - | chr4.4:24229138-24229157 | MS.gene33826:CDS | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | + | chr4.4:24229933-24229952 | None:intergenic | 30.0% |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | + | chr4.4:24229336-24229355 | None:intergenic | 30.0% |
| AAAACGGTATGGTCCAATAT+AGG | + | chr4.4:24229961-24229980 | None:intergenic | 35.0% | |
| AAAATTCAAATAGAGGGAGG+TGG | - | chr4.4:24228926-24228945 | MS.gene33826:intron | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | + | chr4.4:24228331-24228350 | None:intergenic | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | + | chr4.4:24228330-24228349 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | - | chr4.4:24228497-24228516 | MS.gene33826:intron | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | - | chr4.4:24229130-24229149 | MS.gene33826:CDS | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | - | chr4.4:24228106-24228125 | MS.gene33826:CDS | 35.0% | |
| AGATTATCTAGGCCTTTATG+AGG | - | chr4.4:24229321-24229340 | MS.gene33826:intron | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | + | chr4.4:24229941-24229960 | None:intergenic | 35.0% | |
| ATCATTACCATCTGCCAAAA+CGG | + | chr4.4:24229977-24229996 | None:intergenic | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | - | chr4.4:24228152-24228171 | MS.gene33826:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | - | chr4.4:24228107-24228126 | MS.gene33826:CDS | 35.0% | |
| GAAGAGGAATAAAGTTCATG+AGG | + | chr4.4:24228101-24228120 | None:intergenic | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | + | chr4.4:24229598-24229617 | None:intergenic | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | - | chr4.4:24228219-24228238 | MS.gene33826:CDS | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | - | chr4.4:24229945-24229964 | MS.gene33826:CDS | 35.0% | |
| TATACCCATTAGAGTTTGGA+AGG | + | chr4.4:24229109-24229128 | None:intergenic | 35.0% | |
| TCTGGGTTGTAAAAAACATG+TGG | + | chr4.4:24228344-24228363 | None:intergenic | 35.0% | |
| ! | ACCTCCCTCTATTTGAATTT+TGG | + | chr4.4:24228927-24228946 | None:intergenic | 35.0% |
| ! | ATGTATATTCTGGAGGATAC+AGG | - | chr4.4:24229171-24229190 | MS.gene33826:CDS | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | + | chr4.4:24228926-24228945 | None:intergenic | 35.0% |
| ! | TATATTGGACCATACCGTTT+TGG | - | chr4.4:24229960-24229979 | MS.gene33826:CDS | 35.0% |
| ! | TTTTTACAACCCAGATGGAA+AGG | - | chr4.4:24228349-24228368 | MS.gene33826:CDS | 35.0% |
| !! | AGGGATTGAAGTCATTTTCA+AGG | - | chr4.4:24228977-24228996 | MS.gene33826:CDS | 35.0% |
| !! | TGTGTCACTGTATTTTCGAA+AGG | + | chr4.4:24228795-24228814 | None:intergenic | 35.0% |
| !!! | CATGTTTTTTACAACCCAGA+TGG | - | chr4.4:24228344-24228363 | MS.gene33826:CDS | 35.0% |
| ACTTCAATCCCTTCTTTGCT+AGG | + | chr4.4:24228969-24228988 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | - | chr4.4:24228923-24228942 | MS.gene33826:intron | 40.0% | |
| CTATGCATGGGAGATTATCT+AGG | - | chr4.4:24229310-24229329 | MS.gene33826:intron | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | + | chr4.4:24228968-24228987 | None:intergenic | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | - | chr4.4:24229774-24229793 | MS.gene33826:intron | 40.0% | |
| GGAAAAAGAACCATCAGACT+TGG | - | chr4.4:24229846-24229865 | MS.gene33826:CDS | 40.0% | |
| TCCTCAACTTGGAGTTGAAA+GGG | - | chr4.4:24228163-24228182 | MS.gene33826:CDS | 40.0% | |
| TTACAGTCACCTTTCCATCT+GGG | + | chr4.4:24228361-24228380 | None:intergenic | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | + | chr4.4:24228967-24228986 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | + | chr4.4:24228362-24228381 | None:intergenic | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | + | chr4.4:24229840-24229859 | None:intergenic | 40.0% |
| ! | CTCCCATGCATAGTTTGTAA+TGG | + | chr4.4:24229303-24229322 | None:intergenic | 40.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | + | chr4.4:24228087-24228106 | None:intergenic | 40.0% |
| !! | AGTCGACTGAATTTGTTGGT+TGG | + | chr4.4:24229872-24229891 | None:intergenic | 40.0% |
| !! | GTTTTGGCAGATGGTAATGA+TGG | - | chr4.4:24229976-24229995 | MS.gene33826:CDS | 40.0% |
| ACTTGGAGTTGAAAGGGAAG+AGG | - | chr4.4:24228169-24228188 | MS.gene33826:CDS | 45.0% | |
| ACTTTGTCCCATCAGAGAAG+AGG | + | chr4.4:24228117-24228136 | None:intergenic | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | + | chr4.4:24228535-24228554 | None:intergenic | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | - | chr4.4:24229749-24229768 | MS.gene33826:intron | 45.0% | |
| CGATGAACAACAAAGCAGCT+TGG | - | chr4.4:24230014-24230033 | MS.gene33826:CDS | 45.0% | |
| CTCCTCAACTTGGAGTTGAA+AGG | - | chr4.4:24228162-24228181 | MS.gene33826:CDS | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | - | chr4.4:24229102-24229121 | MS.gene33826:intron | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | - | chr4.4:24228539-24228558 | MS.gene33826:intron | 45.0% | |
| TACCATCTGCCAAAACGGTA+TGG | + | chr4.4:24229972-24229991 | None:intergenic | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | + | chr4.4:24228167-24228186 | None:intergenic | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | - | chr4.4:24229101-24229120 | MS.gene33826:intron | 45.0% | |
| ! | TTGGCAGATGGTAATGATGG+TGG | - | chr4.4:24229979-24229998 | MS.gene33826:CDS | 45.0% |
| !! | TTTAATTAATTATATTTATG+TGG | - | chr4.4:24228383-24228402 | MS.gene33826:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | + | chr4.4:24229377-24229396 | None:intergenic | 5.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | - | chr4.4:24228523-24228542 | MS.gene33826:intron | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | - | chr4.4:24229820-24229839 | MS.gene33826:CDS | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | + | chr4.4:24228536-24228555 | None:intergenic | 50.0% | |
| GGCTTGTGATCTATCGACAC+TGG | - | chr4.4:24229795-24229814 | MS.gene33826:CDS | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | - | chr4.4:24228538-24228557 | MS.gene33826:intron | 50.0% | |
| TGGTTTCTTGGGCGACTGAT+TGG | + | chr4.4:24229921-24229940 | None:intergenic | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | - | chr4.4:24228958-24228977 | MS.gene33826:intron | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | + | chr4.4:24229525-24229544 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | + | chr4.4:24229916-24229935 | None:intergenic | 50.0% |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | + | chr4.4:24229859-24229878 | None:intergenic | 50.0% |
| !! | GACCATACCGTTTTGGCAGA+TGG | - | chr4.4:24229967-24229986 | MS.gene33826:CDS | 50.0% |
| !! | GCAGATGGTAATGATGGTGG+TGG | - | chr4.4:24229982-24230001 | MS.gene33826:CDS | 50.0% |
| AAGAAGCCCTCACCTTTGGG+AGG | + | chr4.4:24228532-24228551 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | - | chr4.4:24229825-24229844 | MS.gene33826:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | + | chr4.4:24228963-24228982 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | - | chr4.4:24228957-24228976 | MS.gene33826:intron | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | - | chr4.4:24228522-24228541 | MS.gene33826:intron | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | + | chr4.4:24229829-24229848 | None:intergenic | 55.0% | |
| TGGTCGCATTGTCCTCCCAA+AGG | - | chr4.4:24228517-24228536 | MS.gene33826:intron | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | + | chr4.4:24229913-24229932 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24228071 | 24230080 | 24228071 | ID=MS.gene33826 |
| chr4.4 | mRNA | 24228071 | 24230080 | 24228071 | ID=MS.gene33826.t1;Parent=MS.gene33826 |
| chr4.4 | exon | 24229781 | 24230080 | 24229781 | ID=MS.gene33826.t1.exon1;Parent=MS.gene33826.t1 |
| chr4.4 | CDS | 24229781 | 24230080 | 24229781 | ID=cds.MS.gene33826.t1;Parent=MS.gene33826.t1 |
| chr4.4 | exon | 24229613 | 24229687 | 24229613 | ID=MS.gene33826.t1.exon2;Parent=MS.gene33826.t1 |
| chr4.4 | CDS | 24229613 | 24229687 | 24229613 | ID=cds.MS.gene33826.t1;Parent=MS.gene33826.t1 |
| chr4.4 | exon | 24229115 | 24229212 | 24229115 | ID=MS.gene33826.t1.exon3;Parent=MS.gene33826.t1 |
| chr4.4 | CDS | 24229115 | 24229212 | 24229115 | ID=cds.MS.gene33826.t1;Parent=MS.gene33826.t1 |
| chr4.4 | exon | 24228959 | 24229005 | 24228959 | ID=MS.gene33826.t1.exon4;Parent=MS.gene33826.t1 |
| chr4.4 | CDS | 24228959 | 24229005 | 24228959 | ID=cds.MS.gene33826.t1;Parent=MS.gene33826.t1 |
| chr4.4 | exon | 24228791 | 24228864 | 24228791 | ID=MS.gene33826.t1.exon5;Parent=MS.gene33826.t1 |
| chr4.4 | CDS | 24228791 | 24228864 | 24228791 | ID=cds.MS.gene33826.t1;Parent=MS.gene33826.t1 |
| chr4.4 | exon | 24228071 | 24228373 | 24228071 | ID=MS.gene33826.t1.exon6;Parent=MS.gene33826.t1 |
| chr4.4 | CDS | 24228071 | 24228373 | 24228071 | ID=cds.MS.gene33826.t1;Parent=MS.gene33826.t1 |
| Gene Sequence |
| Protein sequence |
