AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33975

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33975.t1 MTR_1g096030 98.915 461 4 1 1 460 1 461 0.0 936
MS.gene33975.t1 MTR_7g027190 33.411 431 231 15 55 458 272 673 6.41e-64 219
MS.gene33975.t1 MTR_7g074650 32.718 379 222 10 84 458 443 792 3.40e-52 188
MS.gene33975.t1 MTR_4g102790 32.426 404 232 13 73 460 286 664 1.40e-51 185
MS.gene33975.t1 MTR_3g065980 31.463 410 222 15 73 458 166 540 1.15e-50 180
MS.gene33975.t1 MTR_5g097480 31.910 398 229 12 76 458 174 544 2.35e-48 174
MS.gene33975.t1 MTR_3g089055 29.219 397 237 12 78 458 197 565 6.49e-46 167
MS.gene33975.t1 MTR_3g089055 29.219 397 237 12 78 458 202 570 7.63e-46 167
MS.gene33975.t1 MTR_1g029420 29.975 397 234 12 78 458 224 592 9.29e-46 167
MS.gene33975.t1 MTR_5g094450 29.064 406 234 14 76 458 158 532 5.57e-45 164
MS.gene33975.t1 MTR_4g104020 29.782 413 234 15 71 459 141 521 6.43e-45 164
MS.gene33975.t1 MTR_3g056110 29.146 398 240 13 76 458 172 542 9.19e-44 161
MS.gene33975.t1 MTR_4g077760 32.161 398 225 13 75 458 189 555 3.04e-43 160
MS.gene33975.t1 MTR_1g069725 30.576 399 232 15 69 457 99 462 1.74e-42 156
MS.gene33975.t1 MTR_4g133660 30.318 409 238 15 67 457 163 542 7.14e-42 156
MS.gene33975.t1 MTR_2g082090 28.879 464 257 17 22 458 162 579 5.00e-41 154
MS.gene33975.t1 MTR_5g058860 30.602 415 241 12 69 460 109 499 5.29e-41 153
MS.gene33975.t1 MTR_4g064200 30.025 403 237 13 71 457 276 649 2.21e-40 153
MS.gene33975.t1 MTR_3g072710 31.221 426 220 16 69 457 110 499 4.05e-40 150
MS.gene33975.t1 MTR_4g076020 29.381 388 216 11 84 459 89 430 1.61e-39 148
MS.gene33975.t1 MTR_2g026250 30.423 378 209 14 102 458 252 596 5.61e-38 146
MS.gene33975.t1 MTR_8g442410 29.298 413 229 17 73 458 149 525 4.83e-37 142
MS.gene33975.t1 MTR_4g064150 29.750 400 238 14 76 457 358 732 5.62e-36 141
MS.gene33975.t1 MTR_4g064120 29.442 394 235 13 76 451 251 619 3.60e-35 138
MS.gene33975.t1 MTR_4g064180 29.917 361 221 12 76 418 251 597 2.64e-34 136
MS.gene33975.t1 MTR_2g097310 29.146 398 231 15 79 457 272 637 1.55e-33 134
MS.gene33975.t1 MTR_7g062120 27.204 397 244 14 79 458 372 740 1.78e-33 134
MS.gene33975.t1 MTR_2g097467 25.791 411 263 11 61 457 271 653 4.13e-33 132
MS.gene33975.t1 MTR_2g097410 26.895 409 244 14 72 457 364 740 3.57e-32 130
MS.gene33975.t1 MTR_2g097463 25.672 409 262 11 63 457 274 654 3.80e-31 127
MS.gene33975.t1 MTR_2g097473 25.366 410 264 11 62 457 272 653 4.16e-31 127
MS.gene33975.t1 MTR_4g064160 28.173 394 242 15 79 457 316 683 9.27e-30 123
MS.gene33975.t1 MTR_2g097390 27.157 394 244 13 79 457 275 640 3.55e-29 121
MS.gene33975.t1 MTR_2g034260 25.424 413 257 13 69 458 200 584 4.60e-29 120
MS.gene33975.t1 MTR_2g097350 27.411 394 243 15 79 457 274 639 3.45e-28 118
MS.gene33975.t1 MTR_4g097080 25.495 404 246 14 78 458 132 503 7.33e-28 116
MS.gene33975.t1 MTR_8g093070 30.479 397 224 18 76 457 136 495 3.29e-27 114
MS.gene33975.t1 MTR_3g022830 23.661 448 256 13 70 458 16 436 4.70e-27 113
MS.gene33975.t1 MTR_2g034250 25.366 410 262 12 69 458 200 585 5.79e-27 114
MS.gene33975.t1 MTR_5g015490 27.451 408 239 15 78 458 113 490 8.99e-27 112
MS.gene33975.t1 MTR_2g097380 30.488 328 177 16 86 395 231 525 1.78e-26 112
MS.gene33975.t1 MTR_2g034280 25.352 426 239 16 69 458 193 575 2.02e-26 112
MS.gene33975.t1 MTR_7g109580 25.791 411 253 14 69 460 179 556 5.46e-26 111
MS.gene33975.t1 MTR_4g026485 26.980 404 221 17 80 458 270 624 5.11e-22 99.4
MS.gene33975.t1 MTR_0092s0100 26.368 402 235 16 76 458 372 731 3.66e-20 94.0
MS.gene33975.t1 MTR_0092s0100 26.368 402 235 16 76 458 369 728 4.33e-20 94.0
MS.gene33975.t1 MTR_6g047750 27.139 409 226 15 80 458 296 662 7.09e-20 93.2
MS.gene33975.t1 MTR_7g057230 26.515 396 239 13 80 457 295 656 2.11e-19 91.7
MS.gene33975.t1 MTR_4g076140 28.947 228 152 4 67 292 36 255 2.56e-19 90.5
MS.gene33975.t1 MTR_4g076140 31.325 166 96 4 294 459 323 470 8.29e-18 85.9
MS.gene33975.t1 MTR_5g009080 27.536 276 162 9 67 335 44 288 4.31e-19 90.1
MS.gene33975.t1 MTR_5g009080 29.070 172 104 4 288 459 326 479 1.43e-18 88.6
MS.gene33975.t1 MTR_5g015950 23.333 450 252 14 75 457 22 445 5.46e-18 86.3
MS.gene33975.t1 MTR_3g053270 23.333 450 252 14 75 457 22 445 5.46e-18 86.3
MS.gene33975.t1 MTR_2g089100 21.480 419 261 12 79 457 52 442 6.99e-18 86.3
MS.gene33975.t1 MTR_2g099110 25.000 412 269 13 66 458 61 451 4.13e-17 84.0
MS.gene33975.t1 MTR_8g020840 23.227 409 256 14 78 458 170 548 5.94e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33975.t1 AT3G54220 34.884 387 204 12 84 457 298 649 5.92e-55 194
MS.gene33975.t1 AT1G14920 33.085 402 217 16 72 458 165 529 9.07e-54 188
MS.gene33975.t1 AT2G04890 32.905 389 224 12 79 458 53 413 1.86e-52 182
MS.gene33975.t1 AT3G03450 32.446 413 228 17 64 458 166 545 4.38e-51 181
MS.gene33975.t1 AT2G01570 30.918 414 228 17 64 458 207 581 3.72e-50 180
MS.gene33975.t1 AT1G21450 31.234 397 230 12 78 458 224 593 1.36e-49 178
MS.gene33975.t1 AT5G41920 31.931 404 227 12 69 459 33 401 1.40e-49 174
MS.gene33975.t1 AT5G17490 32.282 412 223 18 63 458 145 516 2.09e-49 176
MS.gene33975.t1 AT1G66350 30.976 410 227 17 64 458 138 506 6.56e-48 172
MS.gene33975.t1 AT5G48150 30.633 395 231 13 80 458 123 490 3.92e-47 170
MS.gene33975.t1 AT5G48150 30.633 395 231 13 80 458 123 490 3.92e-47 170
MS.gene33975.t1 AT5G48150 30.633 395 231 13 80 458 123 490 3.92e-47 170
MS.gene33975.t1 AT5G48150 30.633 395 231 13 80 458 123 490 3.92e-47 170
MS.gene33975.t1 AT1G55580 31.075 428 221 16 79 458 44 445 2.39e-46 166
MS.gene33975.t1 AT1G63100 29.381 388 227 11 98 459 264 630 7.12e-46 169
MS.gene33975.t1 AT1G63100 29.381 388 227 11 98 459 289 655 1.59e-45 168
MS.gene33975.t1 AT5G66770 32.658 395 229 14 75 458 216 584 1.47e-44 164
MS.gene33975.t1 AT4G08250 31.127 408 238 14 69 459 97 478 2.14e-42 157
MS.gene33975.t1 AT1G50600 30.127 395 234 12 79 458 159 526 3.94e-42 157
MS.gene33975.t1 AT1G50600 30.127 395 234 12 79 458 230 597 1.44e-41 156
MS.gene33975.t1 AT1G50600 30.127 395 234 12 79 458 234 601 1.64e-41 156
MS.gene33975.t1 AT3G50650 33.155 374 214 12 97 458 193 542 1.79e-41 155
MS.gene33975.t1 AT4G17230 29.829 409 227 13 74 458 153 525 7.94e-37 142
MS.gene33975.t1 AT4G17230 29.829 409 227 13 74 458 153 525 7.94e-37 142
MS.gene33975.t1 AT1G50420 27.056 462 240 17 67 458 45 479 6.64e-32 127
MS.gene33975.t1 AT2G29060 27.456 397 250 13 79 460 284 657 1.84e-31 128
MS.gene33975.t1 AT2G29060 27.456 397 250 13 79 460 321 694 2.14e-31 127
MS.gene33975.t1 AT2G37650 25.505 396 252 13 79 459 335 702 5.03e-30 124
MS.gene33975.t1 AT2G37650 25.505 396 252 13 79 459 347 714 5.06e-30 124
MS.gene33975.t1 AT2G29065 25.980 408 241 16 79 457 252 627 2.66e-29 121
MS.gene33975.t1 AT1G07530 26.396 394 250 14 79 457 396 764 6.36e-28 117
MS.gene33975.t1 AT3G46600 26.196 397 251 13 78 459 3 372 6.44e-28 114
MS.gene33975.t1 AT1G07520 24.582 419 268 15 61 457 136 528 1.15e-27 115
MS.gene33975.t1 AT1G07520 24.582 419 268 15 61 457 136 528 1.15e-27 115
MS.gene33975.t1 AT3G46600 26.329 395 251 13 78 458 211 579 2.12e-27 115
MS.gene33975.t1 AT1G07520 24.582 419 268 15 61 457 301 693 2.14e-27 115
MS.gene33975.t1 AT1G07520 24.582 419 268 15 61 457 300 692 2.20e-27 115
MS.gene33975.t1 AT3G46600 26.329 395 251 13 78 458 179 547 3.32e-27 114
MS.gene33975.t1 AT5G59450 25.123 406 260 13 71 458 219 598 1.32e-26 113
MS.gene33975.t1 AT3G60630 29.909 331 172 15 151 458 329 622 6.68e-26 111
MS.gene33975.t1 AT5G52510 25.926 405 241 15 80 458 269 640 7.42e-22 99.0
MS.gene33975.t1 AT2G45160 28.997 369 194 18 114 458 315 639 1.57e-21 98.2
MS.gene33975.t1 AT4G37650 23.716 409 258 13 79 458 146 529 1.91e-21 97.4
MS.gene33975.t1 AT4G00150 27.446 368 208 17 104 458 233 554 7.60e-21 95.9
MS.gene33975.t1 AT3G49950 23.058 412 252 13 78 457 29 407 2.17e-18 87.4

Find 59 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGGTGGTGGTGGTTTC+AGG 0.088549 1.4:+74762568 MS.gene33975:CDS
TCTCTTTAGGATGGCAAAAT+AGG 0.236883 1.4:+74762619 MS.gene33975:CDS
AGAATCTCTTTCAGATTAAC+TGG 0.292650 1.4:+74761943 MS.gene33975:CDS
TCTTTCAGATTAACTGGTTT+CGG 0.307035 1.4:+74761949 MS.gene33975:CDS
GTTAGTTTCTCAAAAGGTTT+TGG 0.310158 1.4:+74762012 MS.gene33975:CDS
CACTGCAAATCAAGCTATCT+TGG 0.311050 1.4:+74761795 MS.gene33975:CDS
GTGAGAAGTAAGTGAATTAA+TGG 0.332976 1.4:-74761517 None:intergenic
GATGGAAGGGCTATCTCTTT+AGG 0.338311 1.4:+74762606 MS.gene33975:CDS
TTGCAGTGAAATGAGCAAAT+TGG 0.351790 1.4:-74761780 None:intergenic
TCCATCAACATTTCATAGAA+TGG 0.366218 1.4:-74761694 None:intergenic
AGAAACTCTTCGTCGATTGT+TGG 0.372995 1.4:-74761721 None:intergenic
ATGGAGAATCATGGATTTGT+TGG 0.401767 1.4:+74762462 MS.gene33975:CDS
ACCATTCTATGAAATGTTGA+TGG 0.404027 1.4:+74761693 MS.gene33975:CDS
AGAAGGTGGTGGTGGTTTCA+GGG 0.404726 1.4:+74762569 MS.gene33975:CDS
AGTTTCCCTCACCGGTGATT+CGG 0.424793 1.4:+74761609 MS.gene33975:CDS
GAGTTTCAAGGTTTGTTAAG+AGG 0.425739 1.4:+74762048 MS.gene33975:CDS
TTCTGTTGATGAAAACAACT+TGG 0.427192 1.4:+74761549 MS.gene33975:CDS
CTGTTTGGTAAAGATCTGTT+AGG 0.427840 1.4:-74761588 None:intergenic
CCACTTCAATTTGAGGAAGA+AGG 0.429497 1.4:+74762552 MS.gene33975:CDS
TTGAAAATAACTGACACATT+GGG 0.429946 1.4:+74762156 MS.gene33975:CDS
CACCGGTGAGGGAAACTGTT+TGG 0.439723 1.4:-74761603 None:intergenic
GATCAAGAGTAATTAATTTG+AGG 0.441411 1.4:+74762070 MS.gene33975:CDS
AAGGTTAAGAATTGAGAAGA+AGG 0.444053 1.4:+74762338 MS.gene33975:CDS
CTTGATAAGAAGGTTCTACT+AGG 0.446731 1.4:-74762240 None:intergenic
AGGTTAGTTAGTTTCTCAAA+AGG 0.468291 1.4:+74762006 MS.gene33975:CDS
TTTGAGGAAGAAGGTGGTGG+TGG 0.477498 1.4:+74762561 MS.gene33975:CDS
AGGGTTTCAGAAAGAGATGA+TGG 0.479941 1.4:+74762588 MS.gene33975:CDS
AAATGAGCAAATTGGAAATA+CGG 0.480919 1.4:-74761772 None:intergenic
TTCTTTCTCTATTAACTGAA+AGG 0.482856 1.4:-74761336 None:intergenic
AACTCATATGAAGGCTATGA+AGG 0.484565 1.4:+74761418 MS.gene33975:CDS
ATTGAAAATAACTGACACAT+TGG 0.484927 1.4:+74762155 MS.gene33975:CDS
TTATTGTCCACTTCAATTTG+AGG 0.488195 1.4:+74762545 MS.gene33975:CDS
GGAAACATGGAAAAGTAGAA+TGG 0.488634 1.4:+74762443 MS.gene33975:CDS
ACTCTCATTGAAGATTCAAA+TGG 0.488946 1.4:+74761490 MS.gene33975:CDS
TACCAAACAGTTTCCCTCAC+CGG 0.497883 1.4:+74761601 MS.gene33975:CDS
AGCTTCAAGAAACTGAATCT+AGG 0.507835 1.4:+74761986 MS.gene33975:CDS
AAAAGTAGAATGGAGAATCA+TGG 0.508498 1.4:+74762453 MS.gene33975:CDS
CCTTCTTCCTCAAATTGAAG+TGG 0.513172 1.4:-74762552 None:intergenic
TTGTGCAAAATATGAAAAGA+TGG 0.518482 1.4:+74762422 MS.gene33975:CDS
ACTAATAGAAACTCATATGA+AGG 0.526323 1.4:+74761409 MS.gene33975:CDS
GACACGTTGAACCGAATCAC+CGG 0.538056 1.4:-74761620 None:intergenic
AACCTTTCAATACTCTCAAG+TGG 0.550308 1.4:-74762321 None:intergenic
GTCTGTGAATCTTGATAAGA+AGG 0.567154 1.4:-74762250 None:intergenic
CAATTTGAGGAAGAAGGTGG+TGG 0.571559 1.4:+74762558 MS.gene33975:CDS
GTTGTTGTTGTTGAACAAGA+AGG 0.574596 1.4:+74762207 MS.gene33975:CDS
TTGAACCGAATCACCGGTGA+GGG 0.580280 1.4:-74761614 None:intergenic
GTCGTCGCATATTTCACCGA+TGG 0.586765 1.4:+74761640 MS.gene33975:CDS
TTTCAGAAAGAGATGATGGA+AGG 0.599854 1.4:+74762592 MS.gene33975:CDS
GCTTAATAACTATGATGATG+TGG 0.611848 1.4:+74762386 MS.gene33975:CDS
AATCAATAACATGAATAGAA+CGG 0.614448 1.4:-74761849 None:intergenic
TACCACTTGAGAGTATTGAA+AGG 0.618047 1.4:+74762319 MS.gene33975:CDS
GAAAGTGATTGAATCAGTGA+AGG 0.619627 1.4:-74761898 None:intergenic
TTCAGAAAGAGATGATGGAA+GGG 0.626052 1.4:+74762593 MS.gene33975:CDS
CTTCAATTTGAGGAAGAAGG+TGG 0.626263 1.4:+74762555 MS.gene33975:CDS
GAAGGGCTATCTCTTTAGGA+TGG 0.630794 1.4:+74762610 MS.gene33975:CDS
AATATGAAAAGATGGAAACA+TGG 0.637098 1.4:+74762430 MS.gene33975:CDS
AATAACTATGATGATGTGGA+TGG 0.639203 1.4:+74762390 MS.gene33975:CDS
AACTATGATGATGTGGATGG+TGG 0.649454 1.4:+74762393 MS.gene33975:CDS
GTTGAACCGAATCACCGGTG+AGG 0.722471 1.4:-74761615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGAGAAAGAAAAAAGAA+GGG + chr1.4:74761346-74761365 MS.gene33975:CDS 20.0%
!! AATCAATAACATGAATAGAA+CGG - chr1.4:74761852-74761871 None:intergenic 20.0%
!! TAATAGAGAAAGAAAAAAGA+AGG + chr1.4:74761345-74761364 MS.gene33975:CDS 20.0%
!!! ACAACTCATTTTGTTTAAAT+AGG - chr1.4:74762133-74762152 None:intergenic 20.0%
!!! ATTGATTTTGATGTTTCATA+TGG + chr1.4:74761865-74761884 MS.gene33975:CDS 20.0%
! AAATGAGCAAATTGGAAATA+CGG - chr1.4:74761775-74761794 None:intergenic 25.0%
! AATATGAAAAGATGGAAACA+TGG + chr1.4:74762430-74762449 MS.gene33975:CDS 25.0%
! ACTAATAGAAACTCATATGA+AGG + chr1.4:74761409-74761428 MS.gene33975:CDS 25.0%
! ATTGAAAATAACTGACACAT+TGG + chr1.4:74762155-74762174 MS.gene33975:CDS 25.0%
! TTCTTTCTCTATTAACTGAA+AGG - chr1.4:74761339-74761358 None:intergenic 25.0%
! TTGAAAATAACTGACACATT+GGG + chr1.4:74762156-74762175 MS.gene33975:CDS 25.0%
! TTGTGCAAAATATGAAAAGA+TGG + chr1.4:74762422-74762441 MS.gene33975:CDS 25.0%
!! ATGTTTCATATGGTTTTCAA+TGG + chr1.4:74761875-74761894 MS.gene33975:CDS 25.0%
!! GATCAAGAGTAATTAATTTG+AGG + chr1.4:74762070-74762089 MS.gene33975:CDS 25.0%
!!! AACATTGTTTTTGAGTTTCA+AGG + chr1.4:74762036-74762055 MS.gene33975:CDS 25.0%
!!! TTTCTCTTCTTCTTTTTCAA+AGG - chr1.4:74761824-74761843 None:intergenic 25.0%
AAAAGTAGAATGGAGAATCA+TGG + chr1.4:74762453-74762472 MS.gene33975:CDS 30.0%
AAGGTTAAGAATTGAGAAGA+AGG + chr1.4:74762338-74762357 MS.gene33975:CDS 30.0%
ACCATTCTATGAAATGTTGA+TGG + chr1.4:74761693-74761712 MS.gene33975:CDS 30.0%
ACTCTCATTGAAGATTCAAA+TGG + chr1.4:74761490-74761509 MS.gene33975:CDS 30.0%
AGAATCTCTTTCAGATTAAC+TGG + chr1.4:74761943-74761962 MS.gene33975:CDS 30.0%
GAAGAAGAAAAATGAAACTG+TGG + chr1.4:74762092-74762111 MS.gene33975:CDS 30.0%
GTGAGAAGTAAGTGAATTAA+TGG - chr1.4:74761520-74761539 None:intergenic 30.0%
TCCATCAACATTTCATAGAA+TGG - chr1.4:74761697-74761716 None:intergenic 30.0%
TTATTGTCCACTTCAATTTG+AGG + chr1.4:74762545-74762564 MS.gene33975:CDS 30.0%
TTGTTCAACAACAACAACAA+TGG - chr1.4:74762205-74762224 None:intergenic 30.0%
! AATAACTATGATGATGTGGA+TGG + chr1.4:74762390-74762409 MS.gene33975:CDS 30.0%
! AGAATTGAGAAGAAGGTTTT+TGG + chr1.4:74762345-74762364 MS.gene33975:CDS 30.0%
! AGGTTAGTTAGTTTCTCAAA+AGG + chr1.4:74762006-74762025 MS.gene33975:CDS 30.0%
! GCTTAATAACTATGATGATG+TGG + chr1.4:74762386-74762405 MS.gene33975:CDS 30.0%
! TCTTTCAGATTAACTGGTTT+CGG + chr1.4:74761949-74761968 MS.gene33975:CDS 30.0%
! TTCTGTTGATGAAAACAACT+TGG + chr1.4:74761549-74761568 MS.gene33975:CDS 30.0%
!! GTTAGTTTCTCAAAAGGTTT+TGG + chr1.4:74762012-74762031 MS.gene33975:CDS 30.0%
!!! AGAATGGTGATTTTTTTGTG+AGG - chr1.4:74761681-74761700 None:intergenic 30.0%
AACCTTTCAATACTCTCAAG+TGG - chr1.4:74762324-74762343 None:intergenic 35.0%
AACTCATATGAAGGCTATGA+AGG + chr1.4:74761418-74761437 MS.gene33975:CDS 35.0%
AGCTTCAAGAAACTGAATCT+AGG + chr1.4:74761986-74762005 MS.gene33975:CDS 35.0%
ATGGAGAATCATGGATTTGT+TGG + chr1.4:74762462-74762481 MS.gene33975:CDS 35.0%
CAACAACAACAACAATGGAA+GGG - chr1.4:74762200-74762219 None:intergenic 35.0%
CTGTTTGGTAAAGATCTGTT+AGG - chr1.4:74761591-74761610 None:intergenic 35.0%
CTTGATAAGAAGGTTCTACT+AGG - chr1.4:74762243-74762262 None:intergenic 35.0%
CTTTCAGAAAAAGCAACAAG+TGG + chr1.4:74761916-74761935 MS.gene33975:CDS 35.0%
GAAAGTGATTGAATCAGTGA+AGG - chr1.4:74761901-74761920 None:intergenic 35.0%
GAAGAAAAATGAAACTGTGG+CGG + chr1.4:74762095-74762114 MS.gene33975:CDS 35.0%
GGAAACATGGAAAAGTAGAA+TGG + chr1.4:74762443-74762462 MS.gene33975:CDS 35.0%
GTCTGTGAATCTTGATAAGA+AGG - chr1.4:74762253-74762272 None:intergenic 35.0%
TCAACAACAACAACAATGGA+AGG - chr1.4:74762201-74762220 None:intergenic 35.0%
TTGCAGTGAAATGAGCAAAT+TGG - chr1.4:74761783-74761802 None:intergenic 35.0%
! GAGTTTTGCAGTTAAACCAT+CGG - chr1.4:74761659-74761678 None:intergenic 35.0%
! GTTGTTGTTGTTGAACAAGA+AGG + chr1.4:74762207-74762226 MS.gene33975:CDS 35.0%
!! GAGTTTCAAGGTTTGTTAAG+AGG + chr1.4:74762048-74762067 MS.gene33975:CDS 35.0%
!! TACCACTTGAGAGTATTGAA+AGG + chr1.4:74762319-74762338 MS.gene33975:CDS 35.0%
!! TCTCTTTAGGATGGCAAAAT+AGG + chr1.4:74762619-74762638 MS.gene33975:CDS 35.0%
!! TTCAGAAAGAGATGATGGAA+GGG + chr1.4:74762593-74762612 MS.gene33975:CDS 35.0%
!! TTTCAGAAAGAGATGATGGA+AGG + chr1.4:74762592-74762611 MS.gene33975:CDS 35.0%
AGGGTTTCAGAAAGAGATGA+TGG + chr1.4:74762588-74762607 MS.gene33975:CDS 40.0%
CACTGCAAATCAAGCTATCT+TGG + chr1.4:74761795-74761814 MS.gene33975:CDS 40.0%
CCACTTCAATTTGAGGAAGA+AGG + chr1.4:74762552-74762571 MS.gene33975:CDS 40.0%
CCTTCTTCCTCAAATTGAAG+TGG - chr1.4:74762555-74762574 None:intergenic 40.0%
CTTCAATTTGAGGAAGAAGG+TGG + chr1.4:74762555-74762574 MS.gene33975:CDS 40.0%
! AACTATGATGATGTGGATGG+TGG + chr1.4:74762393-74762412 MS.gene33975:CDS 40.0%
! AGAAACTCTTCGTCGATTGT+TGG - chr1.4:74761724-74761743 None:intergenic 40.0%
! TTTTGCTTACTGTGTCAGCA+TGG + chr1.4:74762643-74762662 MS.gene33975:CDS 40.0%
CAATTTGAGGAAGAAGGTGG+TGG + chr1.4:74762558-74762577 MS.gene33975:CDS 45.0%
GATGGAAGGGCTATCTCTTT+AGG + chr1.4:74762606-74762625 MS.gene33975:CDS 45.0%
TACCAAACAGTTTCCCTCAC+CGG + chr1.4:74761601-74761620 MS.gene33975:CDS 45.0%
! GAAGGGCTATCTCTTTAGGA+TGG + chr1.4:74762610-74762629 MS.gene33975:CDS 45.0%
AGTTTCCCTCACCGGTGATT+CGG + chr1.4:74761609-74761628 MS.gene33975:CDS 50.0%
GACACGTTGAACCGAATCAC+CGG - chr1.4:74761623-74761642 None:intergenic 50.0%
GTCGTCGCATATTTCACCGA+TGG + chr1.4:74761640-74761659 MS.gene33975:CDS 50.0%
TTGAACCGAATCACCGGTGA+GGG - chr1.4:74761617-74761636 None:intergenic 50.0%
! TTTGAGGAAGAAGGTGGTGG+TGG + chr1.4:74762561-74762580 MS.gene33975:CDS 50.0%
!! AAGAAGGTGGTGGTGGTTTC+AGG + chr1.4:74762568-74762587 MS.gene33975:CDS 50.0%
!! AGAAGGTGGTGGTGGTTTCA+GGG + chr1.4:74762569-74762588 MS.gene33975:CDS 50.0%
CACCGGTGAGGGAAACTGTT+TGG - chr1.4:74761606-74761625 None:intergenic 55.0%
GTTGAACCGAATCACCGGTG+AGG - chr1.4:74761618-74761637 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 74761295 74762677 74761295 ID=MS.gene33975
chr1.4 mRNA 74761295 74762677 74761295 ID=MS.gene33975.t1;Parent=MS.gene33975
chr1.4 exon 74761295 74762677 74761295 ID=MS.gene33975.t1.exon1;Parent=MS.gene33975.t1
chr1.4 CDS 74761295 74762677 74761295 ID=cds.MS.gene33975.t1;Parent=MS.gene33975.t1
Gene Sequence

>MS.gene33975

ATGGAAGCTGATTCAGAAGAAGATGAGCTTCTGAATCTTAGCCTTTCAGTTAATAGAGAAAGAAAAAAGAAGGGAAAAATCATCATAAGTAGAGAAAATAACAACATGATGAGTACTAATAGAAACTCATATGAAGGCTATGAAGGAAAAATCTTTCATCTTCTTCAAATGAGAGAACAAATGCTAAGAAAAAGCACTCTCATTGAAGATTCAAATGGTCTTCCATTAATTCACTTACTTCTCACAACAGCAACTTCTGTTGATGAAAACAACTTGGATTCATCTCTTGAAAACCTAACAGATCTTTACCAAACAGTTTCCCTCACCGGTGATTCGGTTCAACGTGTCGTCGCATATTTCACCGATGGTTTAACTGCAAAACTCCTCACAAAAAAATCACCATTCTATGAAATGTTGATGGAAGAACCAACAATCGACGAAGAGTTTCTCGCATTCACAGATCTCTACAGAGTTTCACCGTATTTCCAATTTGCTCATTTCACTGCAAATCAAGCTATCTTGGAAGCCTTTGAAAAAGAAGAAGAGAAAAATAACCGTTCTATTCATGTTATTGATTTTGATGTTTCATATGGTTTTCAATGGCCTTCACTGATTCAATCACTTTCAGAAAAAGCAACAAGTGGCAACAGAATCTCTTTCAGATTAACTGGTTTCGGTAAGAATTTAAAAGAGCTTCAAGAAACTGAATCTAGGTTAGTTAGTTTCTCAAAAGGTTTTGGTAACATTGTTTTTGAGTTTCAAGGTTTGTTAAGAGGATCAAGAGTAATTAATTTGAGGAAGAAGAAAAATGAAACTGTGGCGGTTAATTTAGTTTCCTATTTAAACAAAATGAGTTGTTTATTGAAAATAACTGACACATTGGGATTTGTTCATTCTCTTAACCCTTCCATTGTTGTTGTTGTTGAACAAGAAGGTAGTAAAAATCCTAGTAGAACCTTCTTATCAAGATTCACAGACACATTGCATTATTTTGCAGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAGAGTATTGAAAGGTTAAGAATTGAGAAGAAGGTTTTTGGTAAAGAGATTAAAAGCATGCTTAATAACTATGATGATGTGGATGGTGGTGTTGATTGTGCAAAATATGAAAAGATGGAAACATGGAAAAGTAGAATGGAGAATCATGGATTTGTTGGTATGAAAATGAGTTCAAAATGTTTAATACAAGCAAAATTGTTGCTTAAGATGAGAACACATTATTGTCCACTTCAATTTGAGGAAGAAGGTGGTGGTGGTTTCAGGGTTTCAGAAAGAGATGATGGAAGGGCTATCTCTTTAGGATGGCAAAATAGGTTTTTGCTTACTGTGTCAGCATGGCAATCACTTTGA
Protein sequence

>MS.gene33975.t1

MEADSEEDELLNLSLSVNRERKKKGKIIISRENNNMMSTNRNSYEGYEGKIFHLLQMREQMLRKSTLIEDSNGLPLIHLLLTTATSVDENNLDSSLENLTDLYQTVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEEEKNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSGNRISFRLTGFGKNLKELQETESRLVSFSKGFGNIVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNKMSCLLKITDTLGFVHSLNPSIVVVVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKVFGKEIKSMLNNYDDVDGGVDCAKYEKMETWKSRMENHGFVGMKMSSKCLIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDDGRAISLGWQNRFLLTVSAWQSL