AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34122

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34122.t1 MTR_1g093680 85.072 489 25 2 1 449 1 481 0.0 846
MS.gene34122.t1 MTR_5g053430 61.134 476 118 6 4 448 2 441 0.0 558
MS.gene34122.t1 MTR_5g053430 61.345 476 120 6 4 448 2 444 0.0 558
MS.gene34122.t1 MTR_1g093670 60.494 405 92 7 41 443 6 344 3.12e-156 446
MS.gene34122.t1 MTR_7g033320 56.075 214 92 1 8 219 5 218 1.62e-83 265
MS.gene34122.t1 MTR_8g102240 59.162 191 68 4 36 218 27 215 8.77e-74 239
MS.gene34122.t1 MTR_8g102240 59.162 191 68 4 36 218 27 215 8.99e-74 239
MS.gene34122.t1 MTR_2g014680 53.363 223 101 2 32 251 25 247 1.62e-73 233
MS.gene34122.t1 MTR_4g088245 58.115 191 77 2 36 223 44 234 4.11e-71 228
MS.gene34122.t1 MTR_8g069160 58.333 180 72 2 36 212 44 223 1.91e-67 216
MS.gene34122.t1 MTR_4g078875 55.729 192 80 2 37 223 24 215 2.02e-67 217
MS.gene34122.t1 MTR_2g090735 57.068 191 78 2 37 223 25 215 3.28e-63 206
MS.gene34122.t1 MTR_4g089135 33.537 164 85 8 56 213 13 158 8.46e-12 66.6
MS.gene34122.t1 MTR_2g080010 34.177 158 79 9 47 198 5 143 1.13e-11 66.2
MS.gene34122.t1 MTR_8g059170 34.043 141 77 6 58 197 14 139 2.54e-11 65.1
MS.gene34122.t1 MTR_3g088110 34.722 144 73 7 58 198 7 132 4.47e-11 63.9
MS.gene34122.t1 MTR_1g008740 29.825 171 98 7 58 221 13 168 9.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34122.t1 AT1G25580 50.513 487 158 12 4 447 2 448 5.45e-147 427
MS.gene34122.t1 AT3G01600 55.556 225 95 3 7 229 4 225 4.09e-81 255
MS.gene34122.t1 AT5G14490 49.603 252 118 3 1 250 1 245 6.32e-78 246
MS.gene34122.t1 AT5G14490 50.000 246 114 3 7 250 4 242 1.21e-77 243
MS.gene34122.t1 AT5G14490 50.000 246 114 3 7 250 4 242 1.35e-77 245
MS.gene34122.t1 AT5G14490 49.603 252 118 3 1 250 1 245 1.62e-77 246
MS.gene34122.t1 AT4G29230 58.333 192 69 3 36 218 28 217 4.46e-76 244
MS.gene34122.t1 AT4G29230 58.333 192 69 3 36 218 28 217 1.99e-75 244
MS.gene34122.t1 AT4G29230 57.812 192 69 3 36 218 28 216 1.35e-74 242
MS.gene34122.t1 AT1G28470 53.110 209 92 2 21 223 35 243 5.50e-71 227
MS.gene34122.t1 AT5G56620 54.592 196 74 4 36 218 22 215 4.11e-69 226
MS.gene34122.t1 AT5G56620 54.592 196 74 4 36 218 22 215 4.86e-69 225
MS.gene34122.t1 AT5G56620 54.592 196 74 4 36 218 22 215 7.28e-69 224
MS.gene34122.t1 AT4G28500 54.450 191 83 2 37 223 36 226 2.68e-67 217
MS.gene34122.t1 AT1G01720 36.111 144 71 7 58 198 7 132 9.46e-13 68.9
MS.gene34122.t1 AT1G33060 30.588 170 90 8 57 216 23 174 5.49e-11 65.1
MS.gene34122.t1 AT1G33060 30.588 170 90 8 57 216 23 174 6.24e-11 65.1
MS.gene34122.t1 AT1G02230 29.825 171 96 8 59 222 4 157 6.78e-11 63.9

Find 97 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATATGTGGTCAAGATTT+TGG 0.149918 1.2:+74883166 MS.gene34122:CDS
CAGTGTCAAGGTTGAGATTT+TGG 0.158446 1.2:-74884591 None:intergenic
ATTTATCACTACTCTTAAAA+TGG 0.223272 1.2:+74882940 MS.gene34122:CDS
CTTTCTGTATATGCTCATTT+AGG 0.224428 1.2:+74884439 MS.gene34122:CDS
CCAGCAGCAGCAAGCCAAAT+TGG 0.225006 1.2:+74883393 MS.gene34122:CDS
TCGATAACATGTTGACAATT+TGG 0.240409 1.2:-74880760 None:intergenic
CCGAGGTTTCAGGAACATTT+TGG 0.262495 1.2:-74883429 None:intergenic
ACAGTTGCTTCCGAGGTTTC+AGG 0.268678 1.2:-74883439 None:intergenic
CTTTCGGCTTCCAGTATTAT+AGG 0.275483 1.2:-74883137 None:intergenic
TATGATGAGATTCTTGTTCT+TGG 0.289036 1.2:-74883540 None:intergenic
CGATAACATGTTGACAATTT+GGG 0.296736 1.2:-74880759 None:intergenic
CAGTGTCAGCGTCAAGATTA+AGG 0.322174 1.2:-74884543 None:intergenic
CATCTGATCAAGAGATAATA+TGG 0.323541 1.2:+74882861 MS.gene34122:CDS
GCAATCAAAGCCTATAATAC+TGG 0.327546 1.2:+74883127 MS.gene34122:CDS
TTCTCATTGCGAGGAGGTTC+AGG 0.331317 1.2:-74883499 None:intergenic
CTCTCACTTATGGCTACGTC+TGG 0.342000 1.2:+74879657 None:intergenic
TATAGGCTTTGATTGCTCTA+TGG 0.349409 1.2:-74883120 None:intergenic
AGGTTCAGGCGTCACGGAAT+TGG 0.365916 1.2:-74883485 None:intergenic
GAGGATAGGTTTAGTCCTTC+CGG 0.373927 1.2:-74883209 None:intergenic
AGATTCTACCAGATCTTTCT+CGG 0.381982 1.2:+74884191 MS.gene34122:intron
GGTTCAGGCGTCACGGAATT+GGG 0.400382 1.2:-74883484 None:intergenic
GAAAAGCTGAGAAAACTAAC+TGG 0.402325 1.2:+74883296 MS.gene34122:CDS
CCAATTTGGCTTGCTGCTGC+TGG 0.410429 1.2:-74883393 None:intergenic
CAGATCTTTCTCGGTTAGAA+TGG 0.419534 1.2:+74884200 MS.gene34122:CDS
CGACATTCGATTAAGTCAAC+TGG 0.441693 1.2:+74884642 MS.gene34122:CDS
TGGAACAGAAGAGGATGAAA+AGG 0.444567 1.2:+74883339 MS.gene34122:CDS
ATAGAAACTCAAACTAATGA+AGG 0.445370 1.2:+74884277 MS.gene34122:CDS
CAGCAGCAGCAAGCCAAATT+GGG 0.449148 1.2:+74883394 MS.gene34122:CDS
AGAATGGCTACTTGAAAGTC+AGG 0.455673 1.2:+74884216 MS.gene34122:CDS
TGGGGAAAACGGAGAGCAAA+TGG 0.462093 1.2:+74884405 MS.gene34122:CDS
TTCAGAGCCAGTCTCCGAAA+AGG 0.466169 1.2:+74884380 MS.gene34122:CDS
CATCCTCTTCTGTTCCAAGA+TGG 0.472200 1.2:-74883333 None:intergenic
TTGACAATTTGGGCAAGCTC+TGG 0.472858 1.2:-74880749 None:intergenic
CGTCGTGGCTGGTGGACAAA+AGG 0.474826 1.2:+74880659 MS.gene34122:CDS
CTAAACCTATCCTCTTGAAC+GGG 0.489073 1.2:+74883218 MS.gene34122:CDS
GCCAGTCTCCGAAAAGGGAT+GGG 0.491139 1.2:+74884386 MS.gene34122:CDS
GGAAGCAACTGTTATAAAAG+TGG 0.494051 1.2:+74883450 MS.gene34122:CDS
CATTCTAACCGAGAAAGATC+TGG 0.494095 1.2:-74884199 None:intergenic
ACTCATCCTCAGCGTTTACC+AGG 0.499467 1.2:+74882980 MS.gene34122:CDS
TAAATTCATCGATGAATGGA+TGG 0.502555 1.2:-74882922 None:intergenic
AATTCAATAAATTCTGCGAC+AGG 0.503431 1.2:-74884315 None:intergenic
AATGTAGGTGTTTCGCGAGA+TGG 0.508052 1.2:+74883079 MS.gene34122:intron
CTGAAAGAAATCTGCGAACA+AGG 0.508582 1.2:-74884362 None:intergenic
GACGTCCGCTGGCACAAGAC+CGG 0.509302 1.2:+74883190 MS.gene34122:CDS
GTTATGCATCAATACCATCT+TGG 0.511788 1.2:+74883319 MS.gene34122:CDS
TTAACACCTCTAGGTAATCC+AGG 0.513694 1.2:-74882830 None:intergenic
CCGAAAAGGGATGGGGAAAA+CGG 0.514006 1.2:+74884394 MS.gene34122:CDS
ACTACTCTTAAAATGGATGA+TGG 0.516095 1.2:+74882947 MS.gene34122:CDS
TCAGAGCCAGTCTCCGAAAA+GGG 0.517995 1.2:+74884381 MS.gene34122:CDS
CACAGGATAGCTACATTGCG+TGG 0.526226 1.2:+74884780 MS.gene34122:CDS
GTGATAAATTCATCGATGAA+TGG 0.527452 1.2:-74882926 None:intergenic
CCAAAATGTTCCTGAAACCT+CGG 0.528119 1.2:+74883429 MS.gene34122:CDS
ACAGAAGAGGATGAAAAGGA+TGG 0.529217 1.2:+74883343 MS.gene34122:CDS
TAGGTAACACAAGAGTGGCC+TGG 0.532893 1.2:+74882812 MS.gene34122:intron
AGCCAGTCTCCGAAAAGGGA+TGG 0.533326 1.2:+74884385 MS.gene34122:CDS
CATATTATCTCTTGATCAGA+TGG 0.535616 1.2:-74882860 None:intergenic
TTAATAGGAATTCAGCTCAC+AGG 0.535810 1.2:+74884763 MS.gene34122:intron
TGGCACTTGCTTGCAAAAGT+TGG 0.539348 1.2:+74882881 MS.gene34122:CDS
TAGAAACTCAAACTAATGAA+GGG 0.541977 1.2:+74884278 MS.gene34122:CDS
AGAATCTCATCATAGTCCTC+AGG 0.542768 1.2:+74883549 MS.gene34122:CDS
TCCTTCCGGTCTTGTGCCAG+CGG 0.547113 1.2:-74883195 None:intergenic
TATATGTAGACCGTCGTGGC+TGG 0.550711 1.2:+74880648 MS.gene34122:intron
CTTTCTGAAGCCCGTTCAAG+AGG 0.552172 1.2:-74883228 None:intergenic
GCTCTACATTTGCAGTGTCA+AGG 0.556566 1.2:-74884603 None:intergenic
CTCTTGAACGGGCTTCAGAA+AGG 0.560131 1.2:+74883229 MS.gene34122:CDS
ATGTAGACCGTCGTGGCTGG+TGG 0.564418 1.2:+74880651 MS.gene34122:intron
AAATTCATCGATGAATGGAT+GGG 0.565244 1.2:-74882921 None:intergenic
TGAAGCCCGTTCAAGAGGAT+AGG 0.565498 1.2:-74883223 None:intergenic
GTCACGGAATTGGGAGTGAC+TGG 0.565831 1.2:-74883475 None:intergenic
CAATTTGGGCAAGCTCTGGT+AGG 0.567523 1.2:-74880745 None:intergenic
ACAGGATAGCTACATTGCGT+GGG 0.570733 1.2:+74884781 MS.gene34122:CDS
GGATCAAATTTAACACCTCT+AGG 0.573417 1.2:-74882839 None:intergenic
TTGCTTGCAAAAGTTGGTGA+AGG 0.575602 1.2:+74882887 MS.gene34122:CDS
CCAGTCTCCGAAAAGGGATG+GGG 0.581156 1.2:+74884387 MS.gene34122:CDS
GAACATTGCTTCTCATTGCG+AGG 0.584286 1.2:-74883508 None:intergenic
ACTAAACCTATCCTCTTGAA+CGG 0.585397 1.2:+74883217 MS.gene34122:CDS
CTTTATATGACTCCAGAGAG+TGG 0.599269 1.2:+74883271 MS.gene34122:CDS
TCCGCTGGCACAAGACCGGA+AGG 0.600544 1.2:+74883194 MS.gene34122:CDS
GCGAGGAGGTTCAGGCGTCA+CGG 0.600720 1.2:-74883491 None:intergenic
AATTCACAGCAACTTGCGGA+AGG 0.600786 1.2:+74884334 MS.gene34122:CDS
CTTGTATATGTAGACCGTCG+TGG 0.601435 1.2:+74880644 MS.gene34122:intron
TGACTTAATCGAATGTCGGA+AGG 0.609614 1.2:-74884637 None:intergenic
CAGTTGACTTAATCGAATGT+CGG 0.615405 1.2:-74884641 None:intergenic
TCTCACTTATGGCTACGTCT+GGG 0.618630 1.2:+74879658 None:intergenic
AATTCATCGATGAATGGATG+GGG 0.621875 1.2:-74882920 None:intergenic
CATTGCTTCTCATTGCGAGG+AGG 0.622091 1.2:-74883505 None:intergenic
ATTGAATTCACAGCAACTTG+CGG 0.627276 1.2:+74884330 MS.gene34122:CDS
GTTGTTAGGTAACACAAGAG+TGG 0.628897 1.2:+74882807 MS.gene34122:intron
AAAAGCTGAGAAAACTAACT+GGG 0.630819 1.2:+74883297 MS.gene34122:CDS
ATACCATCTTGGAACAGAAG+AGG 0.631271 1.2:+74883330 MS.gene34122:CDS
AGAAACTCAAACTAATGAAG+GGG 0.644054 1.2:+74884279 MS.gene34122:CDS
TGAGCATATACAGAAAGACT+AGG 0.654781 1.2:-74884433 None:intergenic
CAGGATAGCTACATTGCGTG+GGG 0.676657 1.2:+74884782 MS.gene34122:CDS
GATAGCTACATTGCGTGGGG+TGG 0.677045 1.2:+74884785 MS.gene34122:CDS
GAGTGGCCTGGATTACCTAG+AGG 0.709350 1.2:+74882824 MS.gene34122:CDS
AGTCCACCTGGTAAACGCTG+AGG 0.726794 1.2:-74882986 None:intergenic
TATATGACTCCAGAGAGTGG+AGG 0.733666 1.2:+74883274 MS.gene34122:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATGAATTTAATGTAA+TGG - chr1.2:74884692-74884711 None:intergenic 10.0%
!!! AATTCAATTTGAAATTAAAA+TGG - chr1.2:74879936-74879955 None:intergenic 10.0%
!!! TTAATTTCAAATTGAATTTT+TGG + chr1.2:74879938-74879957 MS.gene34122:intron 10.0%
!! AATCATTAAGAATTATTTAG+AGG + chr1.2:74882142-74882161 MS.gene34122:intron 15.0%
!! ATCAAAAAAAAATTAAGTGT+TGG + chr1.2:74882288-74882307 MS.gene34122:intron 15.0%
!! TCTATCATTATGTAAATAAT+AGG - chr1.2:74881333-74881352 None:intergenic 15.0%
!!! AATAAAGCAAATAATTTTGA+AGG - chr1.2:74879890-74879909 None:intergenic 15.0%
!!! ATCTTTTTCTTAATTTCAAA+TGG + chr1.2:74879732-74879751 MS.gene34122:intron 15.0%
!!! GAAATATGTTATTTAATTTC+TGG + chr1.2:74882447-74882466 MS.gene34122:intron 15.0%
!!! TATATATCAGTGATATTTTA+TGG + chr1.2:74880987-74881006 MS.gene34122:intron 15.0%
!!! TCTTTTTCTTAATTTCAAAT+GGG + chr1.2:74879733-74879752 MS.gene34122:intron 15.0%
!!! TGCTTGTTTTTTTTTTTAAT+AGG + chr1.2:74884748-74884767 MS.gene34122:intron 15.0%
!! AAAGCTGGTATTAAAAAATA+AGG - chr1.2:74884047-74884066 None:intergenic 20.0%
!! AAGAACAAAATTATCAACAT+AGG - chr1.2:74884153-74884172 None:intergenic 20.0%
!! AATAAATTCAACTTATGATG+GGG - chr1.2:74881576-74881595 None:intergenic 20.0%
!! AATTGGTATAACTAATCAAA+GGG - chr1.2:74880476-74880495 None:intergenic 20.0%
!! ACTTTATTGTTCAATAGATA+CGG + chr1.2:74879973-74879992 MS.gene34122:intron 20.0%
!! ATAAGAAAATTAAGACAAGT+AGG - chr1.2:74880937-74880956 None:intergenic 20.0%
!! ATTAATGCACAAAGAATATA+TGG - chr1.2:74882346-74882365 None:intergenic 20.0%
!! ATTTATCACTACTCTTAAAA+TGG + chr1.2:74882940-74882959 MS.gene34122:CDS 20.0%
!! CAATAAATTCAACTTATGAT+GGG - chr1.2:74881577-74881596 None:intergenic 20.0%
!! CTTTGAATCAAATACATTAA+AGG + chr1.2:74882177-74882196 MS.gene34122:intron 20.0%
!! GCTATATGATTATAAAATGT+AGG + chr1.2:74883064-74883083 MS.gene34122:intron 20.0%
!! TCAATAAATTCAACTTATGA+TGG - chr1.2:74881578-74881597 None:intergenic 20.0%
!! TCATTATATGAGTTTAATAG+TGG + chr1.2:74879853-74879872 MS.gene34122:intron 20.0%
!!! AAGTTGATATTTATTTGATG+TGG + chr1.2:74883896-74883915 MS.gene34122:intron 20.0%
!!! AATGAATTTAATGTAATGGA+AGG - chr1.2:74884688-74884707 None:intergenic 20.0%
!!! ATTAAGTGTTGGAAAAAAAA+AGG + chr1.2:74882299-74882318 MS.gene34122:intron 20.0%
!!! GTGTTTAAATTTGATAGTTT+TGG + chr1.2:74884093-74884112 MS.gene34122:intron 20.0%
!!! TATGTTATTTAATTTCTGGA+AGG + chr1.2:74882451-74882470 MS.gene34122:intron 20.0%
!!! TGCTTTATTTATTATAGAGA+AGG + chr1.2:74879823-74879842 MS.gene34122:intron 20.0%
!!! TTCCAAATATTTAATTTACC+CGG + chr1.2:74883818-74883837 MS.gene34122:intron 20.0%
!!! TTTCAAAGTTTTATGTTGTT+AGG + chr1.2:74882793-74882812 MS.gene34122:intron 20.0%
! AAAAATGCCAATAAACTTCT+AGG - chr1.2:74882690-74882709 None:intergenic 25.0%
! AACCGGGTAAATTAAATATT+TGG - chr1.2:74883823-74883842 None:intergenic 25.0%
! ACTATATACAAGACATCAAT+CGG + chr1.2:74882539-74882558 MS.gene34122:intron 25.0%
! AGTATCACTGTTATAAAAAC+AGG - chr1.2:74882637-74882656 None:intergenic 25.0%
! ATACAACACAAAAATGTTAG+TGG - chr1.2:74883586-74883605 None:intergenic 25.0%
! ATAGAAACTCAAACTAATGA+AGG + chr1.2:74884277-74884296 MS.gene34122:CDS 25.0%
! ATCAGCATAATTCATTAAAC+CGG - chr1.2:74883840-74883859 None:intergenic 25.0%
! ATGAGAAAGTAATTGATTGT+TGG + chr1.2:74882241-74882260 MS.gene34122:intron 25.0%
! ATGTAGAAGTAAAACATGTT+TGG - chr1.2:74880378-74880397 None:intergenic 25.0%
! ATTGGTATAACTAATCAAAG+GGG - chr1.2:74880475-74880494 None:intergenic 25.0%
! ATTTGTATCGTTCAATTTCT+TGG + chr1.2:74882389-74882408 MS.gene34122:intron 25.0%
! CAATTACTTTCTCATTCATA+GGG - chr1.2:74882236-74882255 None:intergenic 25.0%
! CAATTGGTATAACTAATCAA+AGG - chr1.2:74880477-74880496 None:intergenic 25.0%
! CATCACAAATAGAGAAAATT+TGG - chr1.2:74884725-74884744 None:intergenic 25.0%
! CATTATAGTAGATTCAACTA+AGG - chr1.2:74881097-74881116 None:intergenic 25.0%
! CTATAATGAAAGAAAAAGTG+AGG + chr1.2:74881109-74881128 MS.gene34122:intron 25.0%
! CTATTGATCTATCACTTATT+TGG - chr1.2:74882085-74882104 None:intergenic 25.0%
! GTATCACTGTTATAAAAACA+GGG - chr1.2:74882636-74882655 None:intergenic 25.0%
! TAAAGAAATTCAAAAAAGCG+AGG - chr1.2:74879782-74879801 None:intergenic 25.0%
! TAGAAACTCAAACTAATGAA+GGG + chr1.2:74884278-74884297 MS.gene34122:CDS 25.0%
! TATCGTGTATTACATCAAAT+GGG - chr1.2:74882005-74882024 None:intergenic 25.0%
! TCAATTACTTTCTCATTCAT+AGG - chr1.2:74882237-74882256 None:intergenic 25.0%
! TTAGAAATCTCATAATCAGA+AGG - chr1.2:74880347-74880366 None:intergenic 25.0%
! TTGATATTTATTTGATGTGG+TGG + chr1.2:74883899-74883918 MS.gene34122:intron 25.0%
! TTTGTATCGTTCAATTTCTT+GGG + chr1.2:74882390-74882409 MS.gene34122:intron 25.0%
!! AAAATATGTGGTCAAGATTT+TGG + chr1.2:74883166-74883185 MS.gene34122:CDS 25.0%
!! AACTAGAAAAAGTGTAGATT+AGG + chr1.2:74881071-74881090 MS.gene34122:intron 25.0%
!! AATCTCTTTTATCCAACATT+TGG - chr1.2:74881897-74881916 None:intergenic 25.0%
!! ATTTCGTCTAAAATCACATT+AGG + chr1.2:74882364-74882383 MS.gene34122:intron 25.0%
!! CTTTATTTAATGTCCAACAA+TGG + chr1.2:74879903-74879922 MS.gene34122:intron 25.0%
!! TGTTGATCAAGGTTTTTATA+TGG + chr1.2:74880007-74880026 MS.gene34122:intron 25.0%
!! TTATTTAATTTCTGGAAGGA+AGG + chr1.2:74882455-74882474 MS.gene34122:intron 25.0%
!! TTGATTAGTTATACCAATTG+TGG + chr1.2:74880477-74880496 MS.gene34122:intron 25.0%
!!! AACACTTTTTTCCTTCTAAA+TGG + chr1.2:74881963-74881982 MS.gene34122:intron 25.0%
!!! AACGTTTTAAGCATTTAATG+TGG + chr1.2:74883706-74883725 MS.gene34122:intron 25.0%
!!! AAGCTTTATTCAAATTTGGA+TGG + chr1.2:74883013-74883032 MS.gene34122:intron 25.0%
!!! ACACTTTTTTCCTTCTAAAT+GGG + chr1.2:74881964-74881983 MS.gene34122:intron 25.0%
!!! ATAATTGTTTTAGAACCATG+GGG - chr1.2:74881760-74881779 None:intergenic 25.0%
!!! ATTATGCTGATTTGATTAGA+AGG + chr1.2:74883849-74883868 MS.gene34122:intron 25.0%
!!! GATAATTGTTTTAGAACCAT+GGG - chr1.2:74881761-74881780 None:intergenic 25.0%
!!! GTCTAAGCTTTATTCAAATT+TGG + chr1.2:74883009-74883028 MS.gene34122:intron 25.0%
!!! TGTATGTTTTCCTTTGTTTT+TGG + chr1.2:74883601-74883620 MS.gene34122:intron 25.0%
!!! TTTTAATACCAGCTTTGAAT+GGG + chr1.2:74884051-74884070 MS.gene34122:intron 25.0%
!!! TTTTTAATACCAGCTTTGAA+TGG + chr1.2:74884050-74884069 MS.gene34122:intron 25.0%
AAAAGCTGAGAAAACTAACT+GGG + chr1.2:74883297-74883316 MS.gene34122:CDS 30.0%
AAATTCATCGATGAATGGAT+GGG - chr1.2:74882924-74882943 None:intergenic 30.0%
AAGAGATTGCACAAACAATT+AGG + chr1.2:74881909-74881928 MS.gene34122:intron 30.0%
AAGCAACCGAAAAAGTTATA+TGG + chr1.2:74880713-74880732 MS.gene34122:CDS 30.0%
AATTCAATAAATTCTGCGAC+AGG - chr1.2:74884318-74884337 None:intergenic 30.0%
ACTACTCTTAAAATGGATGA+TGG + chr1.2:74882947-74882966 MS.gene34122:CDS 30.0%
ACTGTTGATACTAAAGTAAG+AGG - chr1.2:74879703-74879722 None:intergenic 30.0%
AGAAACTCAAACTAATGAAG+GGG + chr1.2:74884279-74884298 MS.gene34122:CDS 30.0%
AGATCAATAGTTAGAGATAG+AGG + chr1.2:74882095-74882114 MS.gene34122:intron 30.0%
AGATGTTAAACTCATAATGC+TGG + chr1.2:74883756-74883775 MS.gene34122:intron 30.0%
AGCAACCGAAAAAGTTATAT+GGG + chr1.2:74880714-74880733 MS.gene34122:CDS 30.0%
AGTTACAATAAGAAACTGCA+TGG - chr1.2:74882505-74882524 None:intergenic 30.0%
ATAAGAAACTGCATGGAAAT+AGG - chr1.2:74882498-74882517 None:intergenic 30.0%
ATAAGAGTTCCACTATTACA+AGG - chr1.2:74880563-74880582 None:intergenic 30.0%
ATCAGAAGGAATTATCATAG+TGG - chr1.2:74880333-74880352 None:intergenic 30.0%
CACTTAATCCTCTTTAAGTA+GGG + chr1.2:74881295-74881314 MS.gene34122:intron 30.0%
CATATTATCTCTTGATCAGA+TGG - chr1.2:74882863-74882882 None:intergenic 30.0%
CATCTGATCAAGAGATAATA+TGG + chr1.2:74882861-74882880 MS.gene34122:CDS 30.0%
CGATAACATGTTGACAATTT+GGG - chr1.2:74880762-74880781 None:intergenic 30.0%
CTATCGTGTATTACATCAAA+TGG - chr1.2:74882006-74882025 None:intergenic 30.0%
CTCAAATAAAAAGCCACAAT+TGG - chr1.2:74880493-74880512 None:intergenic 30.0%
CTTATCTTAGTGTCTACAAT+TGG - chr1.2:74880442-74880461 None:intergenic 30.0%
CTTTCTGTATATGCTCATTT+AGG + chr1.2:74884439-74884458 MS.gene34122:CDS 30.0%
GAAAGGCTGTAAAAAGATTA+TGG + chr1.2:74883246-74883265 MS.gene34122:CDS 30.0%
GATCAATAGTTAGAGATAGA+GGG + chr1.2:74882096-74882115 MS.gene34122:intron 30.0%
GATTGATGTCTTGTATATAG+TGG - chr1.2:74882540-74882559 None:intergenic 30.0%
GTGATAAATTCATCGATGAA+TGG - chr1.2:74882929-74882948 None:intergenic 30.0%
GTGTTGGAAAAAAAAAGGAA+CGG + chr1.2:74882304-74882323 MS.gene34122:intron 30.0%
TAAATTCATCGATGAATGGA+TGG - chr1.2:74882925-74882944 None:intergenic 30.0%
TATCTGTGACTTCAGATATA+AGG - chr1.2:74882662-74882681 None:intergenic 30.0%
TATGATGAGATTCTTGTTCT+TGG - chr1.2:74883543-74883562 None:intergenic 30.0%
TCAGAAGGAATTATCATAGT+GGG - chr1.2:74880332-74880351 None:intergenic 30.0%
TCAGCATAATTCATTAAACC+GGG - chr1.2:74883839-74883858 None:intergenic 30.0%
TCGATAACATGTTGACAATT+TGG - chr1.2:74880763-74880782 None:intergenic 30.0%
TCTGACACAATATTCATTTG+TGG + chr1.2:74883789-74883808 MS.gene34122:intron 30.0%
TGCTTTCAATTGTATTTCAG+TGG + chr1.2:74880821-74880840 MS.gene34122:intron 30.0%
TTGGTATAACTAATCAAAGG+GGG - chr1.2:74880474-74880493 None:intergenic 30.0%
TTGGTTGACATATTACACAA+TGG + chr1.2:74882260-74882279 MS.gene34122:intron 30.0%
TTGTATCGTTCAATTTCTTG+GGG + chr1.2:74882391-74882410 MS.gene34122:intron 30.0%
! AATAGATTCAGGAATTTTCC+TGG - chr1.2:74881616-74881635 None:intergenic 30.0%
! GCTTTCCCATATAACTTTTT+CGG - chr1.2:74880722-74880741 None:intergenic 30.0%
! TGATCAAGGTTTTTATATGG+CGG + chr1.2:74880010-74880029 MS.gene34122:intron 30.0%
! TGTACTGTATAGTTTAGCTT+AGG + chr1.2:74883999-74884018 MS.gene34122:intron 30.0%
!! GAATAAACTTTGAGATGAAG+TGG - chr1.2:74881722-74881741 None:intergenic 30.0%
!! TAGAAGGAAAAAAGTGTTTC+TGG - chr1.2:74881961-74881980 None:intergenic 30.0%
!! TAGATTTTAATGTCGCATCA+TGG - chr1.2:74880122-74880141 None:intergenic 30.0%
!!! GCGGTTGCAATTTTTTTTAT+TGG + chr1.2:74880186-74880205 MS.gene34122:intron 30.0%
!!! GGATAATTGTTTTAGAACCA+TGG - chr1.2:74881762-74881781 None:intergenic 30.0%
!!! TTTCCTTTGTTTTTGGAAGA+GGG + chr1.2:74883608-74883627 MS.gene34122:intron 30.0%
!!! TTTTCCTTTGTTTTTGGAAG+AGG + chr1.2:74883607-74883626 MS.gene34122:intron 30.0%
AAAACCTTGATCAACATCAG+AGG - chr1.2:74880003-74880022 None:intergenic 35.0%
AAAGAAAAAGTGAGGTCTCT+TGG + chr1.2:74881117-74881136 MS.gene34122:intron 35.0%
AAATCTAGATGTCTTGACCT+AGG + chr1.2:74880135-74880154 MS.gene34122:intron 35.0%
AAATGGATGATCACCATTGT+TGG - chr1.2:74879919-74879938 None:intergenic 35.0%
AAGTAGGAAACTAGACATGA+AGG - chr1.2:74880921-74880940 None:intergenic 35.0%
AATTCATCGATGAATGGATG+GGG - chr1.2:74882923-74882942 None:intergenic 35.0%
ACAAGAGTTCCACTATTACA+AGG - chr1.2:74880530-74880549 None:intergenic 35.0%
ACTAAACCTATCCTCTTGAA+CGG + chr1.2:74883217-74883236 MS.gene34122:CDS 35.0%
AGAATTTCGTCCTATGTGAT+GGG + chr1.2:74882026-74882045 MS.gene34122:intron 35.0%
AGATTCTACCAGATCTTTCT+CGG + chr1.2:74884191-74884210 MS.gene34122:intron 35.0%
AGTGTCTACAATTGGAACAA+AGG - chr1.2:74880434-74880453 None:intergenic 35.0%
ATAAACTGGAGCACGAAAAA+AGG - chr1.2:74881549-74881568 None:intergenic 35.0%
ATATACAAGACATCAATCGG+TGG + chr1.2:74882542-74882561 MS.gene34122:intron 35.0%
ATTATATGTGTGCCGTGTTA+TGG - chr1.2:74881683-74881702 None:intergenic 35.0%
ATTGAATTCACAGCAACTTG+CGG + chr1.2:74884330-74884349 MS.gene34122:CDS 35.0%
CCAATATCCATGTACATGTA+AGG - chr1.2:74882578-74882597 None:intergenic 35.0%
CCACTTAATCCTCTTTAAGT+AGG + chr1.2:74881294-74881313 MS.gene34122:intron 35.0%
CCTACTTAAAGAGGATTAAG+TGG - chr1.2:74881297-74881316 None:intergenic 35.0%
CCTCTTTAAGTAGGGATTTA+AGG + chr1.2:74881303-74881322 MS.gene34122:intron 35.0%
CCTTAAATCCCTACTTAAAG+AGG - chr1.2:74881306-74881325 None:intergenic 35.0%
CCTTACATGTACATGGATAT+TGG + chr1.2:74882575-74882594 MS.gene34122:intron 35.0%
CGCAAAATCGCATATAATCA+AGG - chr1.2:74883657-74883676 None:intergenic 35.0%
CTAGAGAGTAGTATAGACAA+CGG - chr1.2:74881247-74881266 None:intergenic 35.0%
GAAAAGCTGAGAAAACTAAC+TGG + chr1.2:74883296-74883315 MS.gene34122:CDS 35.0%
GAAACAAGGTAGATTACAAG+GGG - chr1.2:74881357-74881376 None:intergenic 35.0%
GCAATCAAAGCCTATAATAC+TGG + chr1.2:74883127-74883146 MS.gene34122:CDS 35.0%
GCAGAAATCTCAATAGATTC+AGG - chr1.2:74881627-74881646 None:intergenic 35.0%
GGAAACAAGGTAGATTACAA+GGG - chr1.2:74881358-74881377 None:intergenic 35.0%
GGAACTGATGTGTAAGTTTA+TGG - chr1.2:74881813-74881832 None:intergenic 35.0%
GGAAGCAACTGTTATAAAAG+TGG + chr1.2:74883450-74883469 MS.gene34122:CDS 35.0%
GGATCAAATTTAACACCTCT+AGG - chr1.2:74882842-74882861 None:intergenic 35.0%
GTTAAACTCATAATGCTGGT+TGG + chr1.2:74883760-74883779 MS.gene34122:intron 35.0%
GTTAGAGGAACTTTCATCTT+CGG + chr1.2:74881471-74881490 MS.gene34122:intron 35.0%
GTTATGCATCAATACCATCT+TGG + chr1.2:74883319-74883338 MS.gene34122:CDS 35.0%
GTTTGAGCAAATTGGAAACA+AGG - chr1.2:74881371-74881390 None:intergenic 35.0%
TACAGATAACCAAGAGTGAT+TGG - chr1.2:74883983-74884002 None:intergenic 35.0%
TACCTGTCCTAGAAGTTTAT+TGG + chr1.2:74882680-74882699 MS.gene34122:intron 35.0%
TACTTTCTCATTCATAGGGT+TGG - chr1.2:74882232-74882251 None:intergenic 35.0%
TATACAAGACATCAATCGGT+GGG + chr1.2:74882543-74882562 MS.gene34122:intron 35.0%
TCTTCGATTCAGTTATGACT+GGG - chr1.2:74881783-74881802 None:intergenic 35.0%
TGAGCATATACAGAAAGACT+AGG - chr1.2:74884436-74884455 None:intergenic 35.0%
TGGAAACAAGGTAGATTACA+AGG - chr1.2:74881359-74881378 None:intergenic 35.0%
TGGAAGGTCATTGAAAAAGT+AGG - chr1.2:74884672-74884691 None:intergenic 35.0%
TGTATCGTTCAATTTCTTGG+GGG + chr1.2:74882392-74882411 MS.gene34122:intron 35.0%
TTAATAGGAATTCAGCTCAC+AGG + chr1.2:74884763-74884782 MS.gene34122:intron 35.0%
TTATATGTGTGCCGTGTTAT+GGG - chr1.2:74881682-74881701 None:intergenic 35.0%
TTCTTCGATTCAGTTATGAC+TGG - chr1.2:74881784-74881803 None:intergenic 35.0%
TTGTGCTATCCTTGTAATAG+TGG + chr1.2:74880518-74880537 MS.gene34122:intron 35.0%
! AAAAAGCGAGGATTTTTCCA+TGG - chr1.2:74879770-74879789 None:intergenic 35.0%
! AGTGGAAATGATTTTACCTG+AGG - chr1.2:74883568-74883587 None:intergenic 35.0%
! ATAGTCGACGAGTCAATTTT+TGG - chr1.2:74884259-74884278 None:intergenic 35.0%
! CAGTTGACTTAATCGAATGT+CGG - chr1.2:74884644-74884663 None:intergenic 35.0%
! TATAGGCTTTGATTGCTCTA+TGG - chr1.2:74883123-74883142 None:intergenic 35.0%
! TATGATGGGGATGAATAAAC+TGG - chr1.2:74881563-74881582 None:intergenic 35.0%
! TGATTATATGCGATTTTGCG+CGG + chr1.2:74883657-74883676 MS.gene34122:intron 35.0%
! TGTTGATAAGCCCATTTAGA+AGG - chr1.2:74881977-74881996 None:intergenic 35.0%
! TTTTATAACAGTTGCTTCCG+AGG - chr1.2:74883449-74883468 None:intergenic 35.0%
!! AAGGAAAAAAGTGTTTCTGG+AGG - chr1.2:74881958-74881977 None:intergenic 35.0%
!! CACATATTTTTCGACGCTTT+CGG - chr1.2:74883156-74883175 None:intergenic 35.0%
!! GTCATCTTTTTCACCCAATT+TGG - chr1.2:74883410-74883429 None:intergenic 35.0%
!!! TTGATAGTTTTGGTTCGTGA+TGG + chr1.2:74884103-74884122 MS.gene34122:intron 35.0%
AAAAAATTGCAACCGCGATC+TGG - chr1.2:74880182-74880201 None:intergenic 40.0%
AAAAGGAACGGAAATGCAGT+AGG + chr1.2:74882316-74882335 MS.gene34122:intron 40.0%
AACATGTGTAGATGTGGTTG+TGG - chr1.2:74881454-74881473 None:intergenic 40.0%
ACACCCTCTTCCAAAAACAA+AGG - chr1.2:74883614-74883633 None:intergenic 40.0%
ACAGAAGAGGATGAAAAGGA+TGG + chr1.2:74883343-74883362 MS.gene34122:CDS 40.0%
ACATGTGTAGATGTGGTTGT+GGG - chr1.2:74881453-74881472 None:intergenic 40.0%
ACCACATCTACACATGTTAG+AGG + chr1.2:74881456-74881475 MS.gene34122:intron 40.0%
ACGAAAAAAGGCAGTACAGA+GGG - chr1.2:74881537-74881556 None:intergenic 40.0%
AGAATCTCATCATAGTCCTC+AGG + chr1.2:74883549-74883568 MS.gene34122:CDS 40.0%
AGAATGGCTACTTGAAAGTC+AGG + chr1.2:74884216-74884235 MS.gene34122:CDS 40.0%
AGAGGATTAAGTGGAGTACA+TGG - chr1.2:74881288-74881307 None:intergenic 40.0%
ATACCATCTTGGAACAGAAG+AGG + chr1.2:74883330-74883349 MS.gene34122:CDS 40.0%
ATATGGCGGCAATAGCATTA+GGG + chr1.2:74880024-74880043 MS.gene34122:intron 40.0%
ATATTGCATTTGTGCGTGTC+AGG + chr1.2:74880863-74880882 MS.gene34122:intron 40.0%
CAACAGTTTGGACCAAATGT+TGG + chr1.2:74881882-74881901 MS.gene34122:intron 40.0%
CAAGAAGGGACTCAATTAGA+TGG - chr1.2:74881851-74881870 None:intergenic 40.0%
CAATTGGAACAAAGGAACCA+AGG - chr1.2:74880426-74880445 None:intergenic 40.0%
CAGATCTTTCTCGGTTAGAA+TGG + chr1.2:74884200-74884219 MS.gene34122:CDS 40.0%
CATTCTAACCGAGAAAGATC+TGG - chr1.2:74884202-74884221 None:intergenic 40.0%
CCAAAATGTTCCTGAAACCT+CGG + chr1.2:74883429-74883448 MS.gene34122:CDS 40.0%
CGACATTCGATTAAGTCAAC+TGG + chr1.2:74884642-74884661 MS.gene34122:CDS 40.0%
CGATATAGTTATCCAGATCG+CGG + chr1.2:74880167-74880186 MS.gene34122:intron 40.0%
CTAAACCTATCCTCTTGAAC+GGG + chr1.2:74883218-74883237 MS.gene34122:CDS 40.0%
CTGAAAGAAATCTGCGAACA+AGG - chr1.2:74884365-74884384 None:intergenic 40.0%
CTTAACCTTCCAATCACTCT+TGG + chr1.2:74883971-74883990 MS.gene34122:intron 40.0%
CTTCATCCATTCCCATAACA+CGG + chr1.2:74881668-74881687 MS.gene34122:intron 40.0%
CTTTATATGACTCCAGAGAG+TGG + chr1.2:74883271-74883290 MS.gene34122:CDS 40.0%
CTTTCCTCTGATGTTGATCA+AGG + chr1.2:74879996-74880015 MS.gene34122:intron 40.0%
CTTTCGGCTTCCAGTATTAT+AGG - chr1.2:74883140-74883159 None:intergenic 40.0%
GAAATATCGGTAAGGAGAGT+AGG + chr1.2:74882059-74882078 MS.gene34122:intron 40.0%
GAAGTGGACGATTTATAGCT+TGG - chr1.2:74881706-74881725 None:intergenic 40.0%
GACCTGTAGAAATATCGGTA+AGG + chr1.2:74882051-74882070 MS.gene34122:intron 40.0%
GAGAATTTCGTCCTATGTGA+TGG + chr1.2:74882025-74882044 MS.gene34122:intron 40.0%
GAGGATTAAGTGGAGTACAT+GGG - chr1.2:74881287-74881306 None:intergenic 40.0%
GATAACCAAGAGTGATTGGA+AGG - chr1.2:74883979-74883998 None:intergenic 40.0%
GCATTCACCTTACATGTACA+TGG + chr1.2:74882568-74882587 MS.gene34122:intron 40.0%
GGGAAGACCTGTAGAAATAT+CGG + chr1.2:74882046-74882065 MS.gene34122:intron 40.0%
GTGTGCTATCCTTGTAATAG+TGG + chr1.2:74880551-74880570 MS.gene34122:intron 40.0%
GTTGTTAGGTAACACAAGAG+TGG + chr1.2:74882807-74882826 MS.gene34122:intron 40.0%
TAATCACTCCCATTCAAAGC+TGG - chr1.2:74884062-74884081 None:intergenic 40.0%
TAGGAAACTAGACATGAAGG+AGG - chr1.2:74880918-74880937 None:intergenic 40.0%
TATATGGCGGCAATAGCATT+AGG + chr1.2:74880023-74880042 MS.gene34122:intron 40.0%
TATCTTATTCGTGACGTCCT+TGG + chr1.2:74880406-74880425 MS.gene34122:intron 40.0%
TATTGGCGATCTCAAATGCT+TGG + chr1.2:74882592-74882611 MS.gene34122:intron 40.0%
TCCTCTAACATGTGTAGATG+TGG - chr1.2:74881460-74881479 None:intergenic 40.0%
TGACTTAATCGAATGTCGGA+AGG - chr1.2:74884640-74884659 None:intergenic 40.0%
TGCGTGTCAGGTTTATTTCA+TGG + chr1.2:74880875-74880894 MS.gene34122:intron 40.0%
TGGAACAGAAGAGGATGAAA+AGG + chr1.2:74883339-74883358 MS.gene34122:CDS 40.0%
TTAACACCTCTAGGTAATCC+AGG - chr1.2:74882833-74882852 None:intergenic 40.0%
TTAAGTGGAGTACATGGGAA+TGG - chr1.2:74881282-74881301 None:intergenic 40.0%
! CAGTGTCAAGGTTGAGATTT+TGG - chr1.2:74884594-74884613 None:intergenic 40.0%
! CTAATCGACTGCAATTTGCT+CGG - chr1.2:74880075-74880094 None:intergenic 40.0%
! CTCCTTACCGATATTTCTAC+AGG - chr1.2:74882056-74882075 None:intergenic 40.0%
! CTGCAATTTGCTCGGTATTA+AGG - chr1.2:74880067-74880086 None:intergenic 40.0%
! TGCATGCTGTTTGAGCAAAT+TGG - chr1.2:74881379-74881398 None:intergenic 40.0%
!! CGAAAGCGTCGAAAAATATG+TGG + chr1.2:74883154-74883173 MS.gene34122:CDS 40.0%
!! CGGATTCTTGATAGCTGTTT+TGG + chr1.2:74881219-74881238 MS.gene34122:intron 40.0%
!! TGCCAATAAACTTCTAGGAC+AGG - chr1.2:74882685-74882704 None:intergenic 40.0%
!! TTGCTTGCAAAAGTTGGTGA+AGG + chr1.2:74882887-74882906 MS.gene34122:CDS 40.0%
AATGTAGGTGTTTCGCGAGA+TGG + chr1.2:74883079-74883098 MS.gene34122:intron 45.0%
AATTCACAGCAACTTGCGGA+AGG + chr1.2:74884334-74884353 MS.gene34122:CDS 45.0%
ACAGGATAGCTACATTGCGT+GGG + chr1.2:74884781-74884800 MS.gene34122:CDS 45.0%
ACCAAGTTGTGAAGCGATTG+TGG - chr1.2:74880249-74880268 None:intergenic 45.0%
ACTAGACATGAAGGAGGTTG+AGG - chr1.2:74880912-74880931 None:intergenic 45.0%
AGATTTCTTAGTCTGCCCCA+TGG + chr1.2:74881742-74881761 MS.gene34122:intron 45.0%
AGCTATCAAGAATCCGAGCA+GGG - chr1.2:74881215-74881234 None:intergenic 45.0%
ATGGGAATGGATGAAGCAGA+AGG - chr1.2:74881664-74881683 None:intergenic 45.0%
ATTGAGTCCCTTCTTGTCGA+CGG + chr1.2:74881855-74881874 MS.gene34122:intron 45.0%
CACGAAAAAAGGCAGTACAG+AGG - chr1.2:74881538-74881557 None:intergenic 45.0%
CAGTGTCAGCGTCAAGATTA+AGG - chr1.2:74884546-74884565 None:intergenic 45.0%
CATCCTCTTCTGTTCCAAGA+TGG - chr1.2:74883336-74883355 None:intergenic 45.0%
CGAGCAAATTGCAGTCGATT+AGG + chr1.2:74880073-74880092 MS.gene34122:intron 45.0%
CTATATCGCAATCACGACCT+AGG - chr1.2:74880155-74880174 None:intergenic 45.0%
CTTGTATATGTAGACCGTCG+TGG + chr1.2:74880644-74880663 MS.gene34122:intron 45.0%
GAACATTGCTTCTCATTGCG+AGG - chr1.2:74883511-74883530 None:intergenic 45.0%
GAGGATAGGTTTAGTCCTTC+CGG - chr1.2:74883212-74883231 None:intergenic 45.0%
GCAGTCGATTAGGTATGATG+TGG + chr1.2:74880083-74880102 MS.gene34122:intron 45.0%
GCTCTACATTTGCAGTGTCA+AGG - chr1.2:74884606-74884625 None:intergenic 45.0%
TAAAGCTTAGACAGTCCACC+TGG - chr1.2:74883001-74883020 None:intergenic 45.0%
TACAGGTCTTCCCATCACAT+AGG - chr1.2:74882039-74882058 None:intergenic 45.0%
TATATGACTCCAGAGAGTGG+AGG + chr1.2:74883274-74883293 MS.gene34122:CDS 45.0%
TGGCACTTGCTTGCAAAAGT+TGG + chr1.2:74882881-74882900 MS.gene34122:CDS 45.0%
TGGTTCGTGATGGTAGTTTG+TGG + chr1.2:74884113-74884132 MS.gene34122:intron 45.0%
TTGAATGCCGTCGACAAGAA+GGG - chr1.2:74881865-74881884 None:intergenic 45.0%
TTGACAATTTGGGCAAGCTC+TGG - chr1.2:74880752-74880771 None:intergenic 45.0%
! AATGTCCTGATCAGAAGCAC+AGG - chr1.2:74881170-74881189 None:intergenic 45.0%
! CCGAGGTTTCAGGAACATTT+TGG - chr1.2:74883432-74883451 None:intergenic 45.0%
! CGAGGATTTTTCCATGGAAG+AGG - chr1.2:74879764-74879783 None:intergenic 45.0%
! TGAGATTTTCACAACGTGCC+AGG + chr1.2:74881595-74881614 MS.gene34122:intron 45.0%
!! AATGGGTTTTGCCTCTTCCA+TGG + chr1.2:74879750-74879769 MS.gene34122:intron 45.0%
!! CATTCATAGGGTTGGCTACA+TGG - chr1.2:74882224-74882243 None:intergenic 45.0%
AACAGATGCATGTTTGCCGC+TGG + chr1.2:74883931-74883950 MS.gene34122:intron 50.0%
ACAGTTGCTTCCGAGGTTTC+AGG - chr1.2:74883442-74883461 None:intergenic 50.0%
ACTCATCCTCAGCGTTTACC+AGG + chr1.2:74882980-74882999 MS.gene34122:CDS 50.0%
AGCGGCAAACATGCATCTGT+TGG - chr1.2:74883932-74883951 None:intergenic 50.0%
ATGTGGTTGTGGGTCTGTCT+TGG - chr1.2:74881443-74881462 None:intergenic 50.0%
CACAGGATAGCTACATTGCG+TGG + chr1.2:74884780-74884799 MS.gene34122:CDS 50.0%
CAGCAGCAGCAAGCCAAATT+GGG + chr1.2:74883394-74883413 MS.gene34122:CDS 50.0%
CAGCTATCAAGAATCCGAGC+AGG - chr1.2:74881216-74881235 None:intergenic 50.0%
CAGGATAGCTACATTGCGTG+GGG + chr1.2:74884782-74884801 MS.gene34122:CDS 50.0%
CATTGCTTCTCATTGCGAGG+AGG - chr1.2:74883508-74883527 None:intergenic 50.0%
CCGAAAAGGGATGGGGAAAA+CGG + chr1.2:74884394-74884413 MS.gene34122:CDS 50.0%
CTTGTCCTGTGCTTCTGATC+AGG + chr1.2:74881162-74881181 MS.gene34122:intron 50.0%
GCCACAATCGCTTCACAACT+TGG + chr1.2:74880245-74880264 MS.gene34122:intron 50.0%
GCGGCAAACATGCATCTGTT+GGG - chr1.2:74883931-74883950 None:intergenic 50.0%
GTCGACGGCATTCAACAGTT+TGG + chr1.2:74881870-74881889 MS.gene34122:intron 50.0%
GTTGAATGCCGTCGACAAGA+AGG - chr1.2:74881866-74881885 None:intergenic 50.0%
TAGGTAACACAAGAGTGGCC+TGG + chr1.2:74882812-74882831 MS.gene34122:intron 50.0%
TATATGTAGACCGTCGTGGC+TGG + chr1.2:74880648-74880667 MS.gene34122:intron 50.0%
TCAGAGCCAGTCTCCGAAAA+GGG + chr1.2:74884381-74884400 MS.gene34122:CDS 50.0%
TGAAGCCCGTTCAAGAGGAT+AGG - chr1.2:74883226-74883245 None:intergenic 50.0%
TGGGGAAAACGGAGAGCAAA+TGG + chr1.2:74884405-74884424 MS.gene34122:CDS 50.0%
TGTGTGCCGTGTTATGGGAA+TGG - chr1.2:74881677-74881696 None:intergenic 50.0%
TTCAGAGCCAGTCTCCGAAA+AGG + chr1.2:74884380-74884399 MS.gene34122:CDS 50.0%
TTCTCATTGCGAGGAGGTTC+AGG - chr1.2:74883502-74883521 None:intergenic 50.0%
TTGGTTGGAGACGTTGTGAG+AGG - chr1.2:74881424-74881443 None:intergenic 50.0%
! CAATTTGGGCAAGCTCTGGT+AGG - chr1.2:74880748-74880767 None:intergenic 50.0%
! CCGTTTTCCCCATCCCTTTT+CGG - chr1.2:74884397-74884416 None:intergenic 50.0%
! CTCTTGAACGGGCTTCAGAA+AGG + chr1.2:74883229-74883248 MS.gene34122:CDS 50.0%
! CTGATCAGAAGCACAGGACA+AGG - chr1.2:74881164-74881183 None:intergenic 50.0%
! TCAGCTTTTCCTCCACTCTC+TGG - chr1.2:74883286-74883305 None:intergenic 50.0%
!! AAGGAAGGCATCAGTCACAC+AGG + chr1.2:74882470-74882489 MS.gene34122:intron 50.0%
!! CTTTCTGAAGCCCGTTCAAG+AGG - chr1.2:74883231-74883250 None:intergenic 50.0%
AAGCAGAAGGCTGCAGAGAC+AGG - chr1.2:74881651-74881670 None:intergenic 55.0%
AATCCGAGCAGGGCTGCATT+TGG - chr1.2:74881205-74881224 None:intergenic 55.0%
AGATGGCTTCGAGAAGCGAG+TGG - chr1.2:74881834-74881853 None:intergenic 55.0%
AGCCAGTCTCCGAAAAGGGA+TGG + chr1.2:74884385-74884404 MS.gene34122:CDS 55.0%
AGGTTCAGGCGTCACGGAAT+TGG - chr1.2:74883488-74883507 None:intergenic 55.0%
AGTCCACCTGGTAAACGCTG+AGG - chr1.2:74882989-74883008 None:intergenic 55.0%
ATCCGAGCAGGGCTGCATTT+GGG - chr1.2:74881204-74881223 None:intergenic 55.0%
CATCCTCAGCGTTTACCAGG+TGG + chr1.2:74882983-74883002 MS.gene34122:intron 55.0%
CCAGCAGCAGCAAGCCAAAT+TGG + chr1.2:74883393-74883412 MS.gene34122:CDS 55.0%
CCAGTCTCCGAAAAGGGATG+GGG + chr1.2:74884387-74884406 MS.gene34122:CDS 55.0%
CGATTGTGGCAGCGACATTC+AGG - chr1.2:74880235-74880254 None:intergenic 55.0%
GAGTGGCCTGGATTACCTAG+AGG + chr1.2:74882824-74882843 MS.gene34122:CDS 55.0%
GATAGCTACATTGCGTGGGG+TGG + chr1.2:74884785-74884804 MS.gene34122:CDS 55.0%
GCCAGTCTCCGAAAAGGGAT+GGG + chr1.2:74884386-74884405 MS.gene34122:CDS 55.0%
GGTTCAGGCGTCACGGAATT+GGG - chr1.2:74883487-74883506 None:intergenic 55.0%
GGTTGTGGGTCTGTCTTGGT+TGG - chr1.2:74881439-74881458 None:intergenic 55.0%
GTCACGGAATTGGGAGTGAC+TGG - chr1.2:74883478-74883497 None:intergenic 55.0%
! CTTTTGTCCACCAGCCACGA+CGG - chr1.2:74880661-74880680 None:intergenic 55.0%
!! AAGATTTTGGCGACGTCCGC+TGG + chr1.2:74883179-74883198 MS.gene34122:CDS 55.0%
!! CCAATTTGGCTTGCTGCTGC+TGG - chr1.2:74883396-74883415 None:intergenic 55.0%
ATGTAGACCGTCGTGGCTGG+TGG + chr1.2:74880651-74880670 MS.gene34122:intron 60.0%
CTCCCAAATGCAGCCCTGCT+CGG + chr1.2:74881199-74881218 MS.gene34122:intron 60.0%
! CCCCATCCCTTTTCGGAGAC+TGG - chr1.2:74884390-74884409 None:intergenic 60.0%
! CGTCGTGGCTGGTGGACAAA+AGG + chr1.2:74880659-74880678 MS.gene34122:CDS 60.0%
! TCCTTCCGGTCTTGTGCCAG+CGG - chr1.2:74883198-74883217 None:intergenic 60.0%
GACGTCCGCTGGCACAAGAC+CGG + chr1.2:74883190-74883209 MS.gene34122:CDS 65.0%
GCGAGGAGGTTCAGGCGTCA+CGG - chr1.2:74883494-74883513 None:intergenic 65.0%
TCCGCTGGCACAAGACCGGA+AGG + chr1.2:74883194-74883213 MS.gene34122:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 74879666 74884826 74879666 ID=MS.gene34122
chr1.2 mRNA 74879666 74884826 74879666 ID=MS.gene34122.t1;Parent=MS.gene34122
chr1.2 exon 74879666 74879679 74879666 ID=MS.gene34122.t1.exon1;Parent=MS.gene34122.t1
chr1.2 CDS 74879666 74879679 74879666 ID=cds.MS.gene34122.t1;Parent=MS.gene34122.t1
chr1.2 exon 74880657 74880792 74880657 ID=MS.gene34122.t1.exon2;Parent=MS.gene34122.t1
chr1.2 CDS 74880657 74880792 74880657 ID=cds.MS.gene34122.t1;Parent=MS.gene34122.t1
chr1.2 exon 74882815 74883001 74882815 ID=MS.gene34122.t1.exon3;Parent=MS.gene34122.t1
chr1.2 CDS 74882815 74883001 74882815 ID=cds.MS.gene34122.t1;Parent=MS.gene34122.t1
chr1.2 exon 74883086 74883570 74883086 ID=MS.gene34122.t1.exon4;Parent=MS.gene34122.t1
chr1.2 CDS 74883086 74883570 74883086 ID=cds.MS.gene34122.t1;Parent=MS.gene34122.t1
chr1.2 exon 74884193 74884663 74884193 ID=MS.gene34122.t1.exon5;Parent=MS.gene34122.t1
chr1.2 CDS 74884193 74884663 74884193 ID=cds.MS.gene34122.t1;Parent=MS.gene34122.t1
chr1.2 exon 74884770 74884826 74884770 ID=MS.gene34122.t1.exon6;Parent=MS.gene34122.t1
chr1.2 CDS 74884770 74884826 74884770 ID=cds.MS.gene34122.t1;Parent=MS.gene34122.t1
Gene Sequence

>MS.gene34122

ATGGCTACGTCTGGGTATGTCTCTCTCTCTTTTTCCTCTTACTTTAGTATCAACAGTGTTTTGTGAATCTTTTTCTTAATTTCAAATGGGTTTTGCCTCTTCCATGGAAAAATCCTCGCTTTTTTGAATTTCTTTATGATCATTCTTGCTATGTTCATGCTTTATTTATTATAGAGAAGGATATTCTTCATTATATGAGTTTAATAGTGGAATATAACGCACCTTCAAAATTATTTGCTTTATTTAATGTCCAACAATGGTGATCATCCATTTTAATTTCAAATTGAATTTTTGGTTGTTTTTGCTTACTTTATTGTTCAATAGATACGGCTTTCCTCTGATGTTGATCAAGGTTTTTATATGGCGGCAATAGCATTAGGGTTGCACTGCGTAGCGATCCTTAATACCGAGCAAATTGCAGTCGATTAGGTATGATGTGGCTGCAATTGCGAGCCATGATGCGACATTAAAATCTAGATGTCTTGACCTAGGTCGTGATTGCGATATAGTTATCCAGATCGCGGTTGCAATTTTTTTTATTGGAACTCTAGCAGAAACATCGAAAACCTGAATGTCGCTGCCACAATCGCTTCACAACTTGGTGTTGATAATCTCATGTCTAGTTTTTGTGCTTTAAACATAAAAACAATTTTTGAGAAAAAACCCACTATGATAATTCCTTCTGATTATGAGATTTCTAAAAGTCAATCCAAACATGTTTTACTTCTACATGTCAATCGTATCTTATTCGTGACGTCCTTGGTTCCTTTGTTCCAATTGTAGACACTAAGATAAGATTGTTTTTCCCCCTTTGATTAGTTATACCAATTGTGGCTTTTTATTTGAGTTGAATTGTGCTATCCTTGTAATAGTGGAACTCTTGTTGTGTGCTATCCTTGTAATAGTGGAACTCTTATTGTCATCTTGAACATAGTTAATTTGATTGTCAACGTTTATATCTATAGTTATGCATCTTTTCTTGTATATGTAGACCGTCGTGGCTGGTGGACAAAAGGAGAATTGCAACAAAAATAAAGTGTGCATCTGAAGCAACCGAAAAAGTTATATGGGAAAGCAATCCTACCAGAGCTTGCCCAAATTGTCAACATGTTATCGACAACAGTGATGTATGTATATCTTTTTAATTTAACTTTTTGCTTTCAATTGTATTTCAGTGGAACAGAACATTTGTTCTAGATATTGCATTTGTGCGTGTCAGGTTTATTTCATGGAAAATGTTCAACCTCAACCTCCTTCATGTCTAGTTTCCTACTTGTCTTAATTTTCTTATTATAGTTTTCATTATTACTTTTCATCATAATATATATCAGTGATATTTTATGGTTTTTCACTTCTTTGCTAAGTTCTATCAGTGATATTGCATGAGTGTGATTGTATATGAAAAAACTAGAAAAAGTGTAGATTAGGCCTTAGTTGAATCTACTATAATGAAAGAAAAAGTGAGGTCTCTTGGAATCTGAAAAGCATCTCATCTCCTTGTCCTGTGCTTCTGATCAGGACATTCTGTTAAGTCTCCCAAATGCAGCCCTGCTCGGATTCTTGATAGCTGTTTTGGTTCCGTTGTCTATACTACTCTCTAGTCTCTACTAAGACCATTCCCATGTACTCCACTTAATCCTCTTTAAGTAGGGATTTAAGGCATACCTATTATTTACATAATGATAGATCCCCTTGTAATCTACCTTGTTTCCAATTTGCTCAAACAGCATGCAAGATTTTTGCAATTGACTTTAACCTCTCACAACGTCTCCAACCAAGACAGACCCACAACCACATCTACACATGTTAGAGGAACTTTCATCTTCGGTATGTTATTTTGAATTTTAAAATACTTTTATGCAACTGAACCCTCTGTACTGCCTTTTTTCGTGCTCCAGTTTATTCATCCCCATCATAAGTTGAATTTATTGAGATTTTCACAACGTGCCAGGAAAATTCCTGAATCTATTGAGATTTCTGCACCTGTCTCTGCAGCCTTCTGCTTCATCCATTCCCATAACACGGCACACATATAATCCAAGCTATAAATCGTCCACTTCATCTCAAAGTTTATTCAGATTTCTTAGTCTGCCCCATGGTTCTAAAACAATTATCCCAGTCATAACTGAATCGAAGAAACTCTTCCATAAACTTACACATCAGTTCCACTCGCTTCTCGAAGCCATCTAATTGAGTCCCTTCTTGTCGACGGCATTCAACAGTTTGGACCAAATGTTGGATAAAAGAGATTGCACAAACAATTAGGACAATGTCATTGATAGTAAATTGCCTCCAGAAACACTTTTTTCCTTCTAAATGGGCTTATCAACATTTTTCCCATTTGATGTAATACACGATAGAGAATTTCGTCCTATGTGATGGGAAGACCTGTAGAAATATCGGTAAGGAGAGTAGGCCAAATAAGTGATAGATCAATAGTTAGAGATAGAGGGTGACATAGAAAAAGTATAGAGCAAATCATTAAGAATTATTTAGAGGTAATAGTTTCATCTTTGAATCAAATACATTAAAGGATGTTTATAGCTTTAATTAATCCATGTAGCCAACCCTATGAATGAGAAAGTAATTGATTGTTGGTTGACATATTACACAATGGAAATCATCAAAAAAAAATTAAGTGTTGGAAAAAAAAAGGAACGGAAATGCAGTAGGCTATCCATATATTCTTTGTGCATTAATTTCGTCTAAAATCACATTAGGTCATTTGTATCGTTCAATTTCTTGGGGGAGCTAGAGAACGCTTAGCATGTTTTATATACAGAAATATGTTATTTAATTTCTGGAAGGAAGGCATCAGTCACACAGGAACCTATTTCCATGCAGTTTCTTATTGTAACTTCTGATCTTTCTCCACTATATACAAGACATCAATCGGTGGGTTGCATTCACCTTACATGTACATGGATATTGGCGATCTCAAATGCTTGGTACTTGAGTATTTTTTTGCCCTGTTTTTATAACAGTGATACTTACCTTATATCTGAAGTCACAGATACCTGTCCTAGAAGTTTATTGGCATTTTTAAGTTAACAGCTTAAATGAACAATGAAGCTATGTTTTGTCATTTTGTAAGTTCTCAAGTATCTCACTTATAGATGTTCTGATATTTCAAAGTTTTATGTTGTTAGGTAACACAAGAGTGGCCTGGATTACCTAGAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGAAGGAAATTTAGAACCCCATCCATTCATCGATGAATTTATCACTACTCTTAAAATGGATGATGGTATTTGTTATACTCATCCTCAGCGTTTACCAGGTGGACTGTCTAAGCTTTATTCAAATTTGGATGGTTGATTATTATTCTGATTAACATAATAAGCTATATGATTATAAAATGTAGGTGTTTCGCGAGATGGAATTGCTTCACACTTTTTCCATAGAGCAATCAAAGCCTATAATACTGGAAGCCGAAAGCGTCGAAAAATATGTGGTCAAGATTTTGGCGACGTCCGCTGGCACAAGACCGGAAGGACTAAACCTATCCTCTTGAACGGGCTTCAGAAAGGCTGTAAAAAGATTATGGTACTTTATATGACTCCAGAGAGTGGAGGAAAAGCTGAGAAAACTAACTGGGTTATGCATCAATACCATCTTGGAACAGAAGAGGATGAAAAGGATGGAGAATATGTTATTTCTAAAGTATTTTACCAGCAGCAGCAAGCCAAATTGGGTGAAAAAGATGACCAAAATGTTCCTGAAACCTCGGAAGCAACTGTTATAAAAGTGGATCCAGTCACTCCCAATTCCGTGACGCCTGAACCTCCTCGCAATGAGAAGCAATGTTCAGATGTAGACCAAGAACAAGAATCTCATCATAGTCCTCAGGTAAAATCATTTCCACTAACATTTTTGTGTTGTATGTTTTCCTTTGTTTTTGGAAGAGGGTGTATCACATAATGAACATGTAACCTTGATTATATGCGATTTTGCGCGGCGTTATCTTTATTTTCTCACTCTAAAAACGTTTTAAGCATTTAATGTGGATTGAATCTTTGAAATGTCTTTTGTTAAGATGTTAAACTCATAATGCTGGTTGGTATTAATCTGACACAATATTCATTTGTGGTTTTCTTTCCAAATATTTAATTTACCCGGTTTAATGAATTATGCTGATTTGATTAGAAGGCGTGCTGTTGTGTCACACATTTCAAAGTTGATATTTATTTGATGTGGTGGTTTTCTCCCAACAGATGCATGTTTGCCGCTGGCTTCATTGAAATAAATTCTTAACCTTCCAATCACTCTTGGTTATCTGTACTGTATAGTTTAGCTTAGGACTAATGTTGTAATTCTTAATGCCTTATTTTTTAATACCAGCTTTGAATGGGAGTGATTAAAAACTCGTATGTGTTTAAATTTGATAGTTTTGGTTCGTGATGGTAGTTTGTGGAAATATGAACATAACCTATGTTGATAATTTTGTTCTTTTGTCTGTATTCTACAACAGATTCTACCAGATCTTTCTCGGTTAGAATGGCTACTTGAAAGTCAGGATGACTGTGAAGAGCTTCCAAAAATTGACTCGTCGACTATAGAAACTCAAACTAATGAAGGGGTCGATAACATTGACCTGTCGCAGAATTTATTGAATTCACAGCAACTTGCGGAAGGACTTTCCTTGTTCGCAGATTTCTTTCAGAGCCAGTCTCCGAAAAGGGATGGGGAAAACGGAGAGCAAATGGAACGACCTAGTCTTTCTGTATATGCTCATTTAGGAGCAGAGCAATTGAAGAAAGATATTGAAGAGTGTCAAAATCTTGAACTTAACACTACAAAGAAGAATGATATTGAAGAATGCCTTAATCTTGACGCTGACACTGACAAAAAGAGCGATATCGAAGAGTGCCAAAATCTCAACCTTGACACTGCAAATGTAGAGCTTGACTCACAACCTTCCGACATTCGATTAAGTCAACTGGTATTCCTACTTTTTCAATGACCTTCCATTACATTAAATTCATTTTAATTGTCACACACCAAATTTTCTCTATTTGTGATGCATTGCTTGTTTTTTTTTTTAATAGGAATTCAGCTCACAGGATAGCTACATTGCGTGGGGTGGTTACAAGACAATCAACTAA
Protein sequence

>MS.gene34122.t1

MATSGPSWLVDKRRIATKIKCASEATEKVIWESNPTRACPNCQHVIDNSDVTQEWPGLPRGVKFDPSDQEIIWHLLAKVGEGNLEPHPFIDEFITTLKMDDGICYTHPQRLPGVSRDGIASHFFHRAIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPILLNGLQKGCKKIMVLYMTPESGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQAKLGEKDDQNVPETSEATVIKVDPVTPNSVTPEPPRNEKQCSDVDQEQESHHSPQILPDLSRLEWLLESQDDCEELPKIDSSTIETQTNEGVDNIDLSQNLLNSQQLAEGLSLFADFFQSQSPKRDGENGEQMERPSLSVYAHLGAEQLKKDIEECQNLELNTTKKNDIEECLNLDADTDKKSDIEECQNLNLDTANVELDSQPSDIRLSQLEFSSQDSYIAWGGYKTIN