Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34123.t1 | XP_003591828.2 | 62.1 | 467 | 109 | 4 | 4 | 403 | 6 | 471 | 8.80E-153 | 550.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34123.t1 | Q6NQK2 | 46.2 | 446 | 191 | 10 | 1 | 403 | 1 | 440 | 1.8e-98 | 360.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34123.t1 | G7I498 | 62.1 | 467 | 109 | 4 | 4 | 403 | 6 | 471 | 6.4e-153 | 550.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34123.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34123.t1 | MTR_1g093670 | 78.689 | 366 | 46 | 3 | 39 | 403 | 6 | 340 | 0.0 | 580 |
| MS.gene34123.t1 | MTR_1g093680 | 62.741 | 467 | 106 | 4 | 4 | 403 | 6 | 471 | 0.0 | 569 |
| MS.gene34123.t1 | MTR_5g053430 | 57.596 | 441 | 140 | 7 | 1 | 403 | 1 | 432 | 4.95e-167 | 475 |
| MS.gene34123.t1 | MTR_5g053430 | 58.277 | 441 | 140 | 7 | 1 | 403 | 1 | 435 | 6.19e-167 | 475 |
| MS.gene34123.t1 | MTR_7g033320 | 53.271 | 214 | 98 | 1 | 6 | 217 | 5 | 218 | 4.96e-78 | 249 |
| MS.gene34123.t1 | MTR_2g014680 | 55.288 | 208 | 90 | 2 | 32 | 236 | 27 | 234 | 9.04e-72 | 228 |
| MS.gene34123.t1 | MTR_8g102240 | 51.584 | 221 | 97 | 4 | 34 | 246 | 27 | 245 | 4.63e-70 | 228 |
| MS.gene34123.t1 | MTR_8g102240 | 51.584 | 221 | 97 | 4 | 34 | 246 | 27 | 245 | 4.74e-70 | 228 |
| MS.gene34123.t1 | MTR_4g088245 | 53.465 | 202 | 91 | 2 | 34 | 232 | 44 | 245 | 4.37e-69 | 221 |
| MS.gene34123.t1 | MTR_4g078875 | 53.807 | 197 | 86 | 2 | 30 | 221 | 19 | 215 | 8.70e-66 | 211 |
| MS.gene34123.t1 | MTR_8g069160 | 56.111 | 180 | 76 | 2 | 34 | 210 | 44 | 223 | 1.73e-65 | 209 |
| MS.gene34123.t1 | MTR_2g090735 | 54.082 | 196 | 86 | 2 | 30 | 221 | 20 | 215 | 5.73e-61 | 199 |
| MS.gene34123.t1 | MTR_6g084430 | 32.609 | 184 | 96 | 9 | 56 | 231 | 5 | 168 | 4.16e-15 | 76.3 |
| MS.gene34123.t1 | MTR_2g080010 | 36.000 | 150 | 70 | 9 | 54 | 196 | 13 | 143 | 2.02e-12 | 68.2 |
| MS.gene34123.t1 | MTR_6g012670 | 33.803 | 142 | 76 | 5 | 56 | 195 | 20 | 145 | 2.20e-11 | 65.1 |
| MS.gene34123.t1 | MTR_3g088110 | 35.417 | 144 | 72 | 8 | 56 | 196 | 7 | 132 | 2.89e-11 | 64.3 |
| MS.gene34123.t1 | MTR_8g059170 | 34.752 | 141 | 76 | 6 | 56 | 195 | 14 | 139 | 6.08e-11 | 63.5 |
| MS.gene34123.t1 | MTR_7g085260 | 29.075 | 227 | 111 | 12 | 56 | 262 | 17 | 213 | 6.94e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34123.t1 | AT1G25580 | 48.330 | 449 | 177 | 16 | 1 | 403 | 1 | 440 | 1.26e-124 | 368 |
| MS.gene34123.t1 | AT3G01600 | 52.727 | 220 | 99 | 3 | 5 | 222 | 4 | 220 | 1.57e-74 | 236 |
| MS.gene34123.t1 | AT5G14490 | 52.558 | 215 | 99 | 2 | 3 | 215 | 2 | 215 | 9.26e-73 | 229 |
| MS.gene34123.t1 | AT5G14490 | 52.558 | 215 | 99 | 2 | 3 | 215 | 2 | 215 | 1.37e-72 | 231 |
| MS.gene34123.t1 | AT5G14490 | 52.582 | 213 | 98 | 2 | 5 | 215 | 7 | 218 | 3.41e-72 | 230 |
| MS.gene34123.t1 | AT5G14490 | 52.582 | 213 | 98 | 2 | 5 | 215 | 7 | 218 | 5.93e-72 | 230 |
| MS.gene34123.t1 | AT4G29230 | 56.771 | 192 | 72 | 3 | 34 | 216 | 28 | 217 | 3.96e-71 | 230 |
| MS.gene34123.t1 | AT4G29230 | 56.771 | 192 | 72 | 3 | 34 | 216 | 28 | 217 | 1.77e-70 | 230 |
| MS.gene34123.t1 | AT4G29230 | 56.250 | 192 | 72 | 3 | 34 | 216 | 28 | 216 | 1.46e-69 | 228 |
| MS.gene34123.t1 | AT1G28470 | 51.584 | 221 | 96 | 3 | 7 | 221 | 28 | 243 | 2.59e-69 | 221 |
| MS.gene34123.t1 | AT4G28500 | 50.000 | 228 | 100 | 5 | 5 | 221 | 2 | 226 | 9.45e-66 | 212 |
| MS.gene34123.t1 | AT5G56620 | 52.821 | 195 | 79 | 3 | 34 | 216 | 22 | 215 | 9.91e-66 | 215 |
| MS.gene34123.t1 | AT5G56620 | 52.821 | 195 | 79 | 3 | 34 | 216 | 22 | 215 | 1.03e-65 | 215 |
| MS.gene34123.t1 | AT5G56620 | 52.821 | 195 | 79 | 3 | 34 | 216 | 22 | 215 | 1.84e-65 | 214 |
| MS.gene34123.t1 | AT3G18400 | 34.320 | 169 | 90 | 8 | 56 | 219 | 5 | 157 | 1.92e-14 | 73.9 |
| MS.gene34123.t1 | AT3G04060 | 30.303 | 231 | 125 | 9 | 43 | 261 | 7 | 213 | 3.72e-13 | 70.5 |
| MS.gene34123.t1 | AT1G01720 | 36.806 | 144 | 70 | 8 | 56 | 196 | 7 | 132 | 5.79e-13 | 69.3 |
| MS.gene34123.t1 | AT1G02220 | 24.812 | 266 | 162 | 10 | 57 | 309 | 4 | 244 | 5.72e-12 | 67.4 |
| MS.gene34123.t1 | AT5G53950 | 30.093 | 216 | 123 | 10 | 56 | 261 | 17 | 214 | 5.89e-12 | 67.0 |
| MS.gene34123.t1 | AT1G02230 | 30.994 | 171 | 94 | 8 | 57 | 220 | 4 | 157 | 1.50e-11 | 65.9 |
| MS.gene34123.t1 | AT3G04420 | 31.677 | 161 | 93 | 7 | 57 | 214 | 4 | 150 | 1.66e-11 | 65.1 |
| MS.gene34123.t1 | AT3G04420 | 31.677 | 161 | 93 | 7 | 57 | 214 | 4 | 150 | 5.82e-11 | 63.9 |
| MS.gene34123.t1 | AT1G33060 | 29.940 | 167 | 95 | 7 | 55 | 214 | 23 | 174 | 6.02e-11 | 64.7 |
| MS.gene34123.t1 | AT1G33060 | 29.940 | 167 | 95 | 7 | 55 | 214 | 23 | 174 | 6.74e-11 | 64.7 |
Find 90 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTATCACTACACTTAAA+AGG | 0.136378 | 1.2:+74895865 | MS.gene34123:CDS |
| CCAGCAGCAGCAAGCTAAAT+TGG | 0.143250 | 1.2:+74896775 | MS.gene34123:CDS |
| TTGTTCTTGGTCTACAAAAT+TGG | 0.165113 | 1.2:-74896903 | None:intergenic |
| ATAGCTGCTTCCGCGGTTTC+AGG | 0.201646 | 1.2:-74896821 | None:intergenic |
| TGCCAGTGTGGTCAAGATTT+TGG | 0.220058 | 1.2:-74897652 | None:intergenic |
| TACGGTGAGTTTCTTGTTCT+TGG | 0.225830 | 1.2:-74896916 | None:intergenic |
| TCCACAACATGTTGACAATT+AGG | 0.244707 | 1.2:-74892508 | None:intergenic |
| CTTTCGACATATGATCATTT+AGG | 0.255976 | 1.2:+74897596 | MS.gene34123:CDS |
| TCGAACCAAGAAAATGTTTC+CGG | 0.285879 | 1.2:-74897506 | None:intergenic |
| TGACCTGCCGCTGAATCTAT+TGG | 0.287696 | 1.2:+74897469 | MS.gene34123:CDS |
| AGGTTGAGTGGTCACAAAAT+TGG | 0.309696 | 1.2:-74896867 | None:intergenic |
| CATCTGATCAAGAGATAATA+TGG | 0.323541 | 1.2:+74895787 | MS.gene34123:CDS |
| GGATCAAATTTAACACCTTT+AGG | 0.328542 | 1.2:-74895765 | None:intergenic |
| CCACAACATGTTGACAATTA+GGG | 0.332418 | 1.2:-74892507 | None:intergenic |
| TGTTCTTGGTCTACAAAATT+GGG | 0.352684 | 1.2:-74896902 | None:intergenic |
| GTACACTTGCAACCGCTATA+AGG | 0.373427 | 1.2:+74892428 | MS.gene34123:CDS |
| TATAAGCTTTCACTGCTCTA+TGG | 0.392319 | 1.2:-74896502 | None:intergenic |
| CTTTATATGTTTCCAGAGAA+TGG | 0.394253 | 1.2:+74896653 | MS.gene34123:CDS |
| ATGTCTTTCTTCAACTGCTC+TGG | 0.395427 | 1.2:-74897620 | None:intergenic |
| CCAATTTAGCTTGCTGCTGC+TGG | 0.397376 | 1.2:-74896775 | None:intergenic |
| GGTTGAGTGGTCACAAAATT+GGG | 0.423142 | 1.2:-74896866 | None:intergenic |
| TATGTCCGCTGGCACAAGAC+TGG | 0.431620 | 1.2:+74896572 | MS.gene34123:CDS |
| GCAGTGAAAGCTTATAGTAC+TGG | 0.438200 | 1.2:+74896509 | MS.gene34123:CDS |
| CGAACCAAGAAAATGTTTCC+GGG | 0.439939 | 1.2:-74897505 | None:intergenic |
| CGACATTCGATTAAGTCAAC+TGG | 0.441693 | 1.2:+74897700 | MS.gene34123:CDS |
| ATTTATCACTACACTTAAAA+GGG | 0.459703 | 1.2:+74895866 | MS.gene34123:CDS |
| TTTGAGTTTCTCCCGTCGAC+GGG | 0.463569 | 1.2:-74897424 | None:intergenic |
| ATTTGAGTTTCTCCCGTCGA+CGG | 0.464749 | 1.2:-74897425 | None:intergenic |
| CAGCAGCAGCAAGCTAAATT+GGG | 0.472524 | 1.2:+74896776 | MS.gene34123:CDS |
| TTAACACCTTTAGGAAGTCC+AGG | 0.482399 | 1.2:-74895756 | None:intergenic |
| GCCAGTCTCCGAAAAGGCAC+AGG | 0.483606 | 1.2:+74897543 | MS.gene34123:CDS |
| TTTCCAGAGAATGGAGGAAA+AGG | 0.487620 | 1.2:+74896662 | MS.gene34123:CDS |
| GTTATGCATCAGTATCATCT+TGG | 0.493181 | 1.2:+74896701 | MS.gene34123:CDS |
| TTGGAACAGAAGAGGATGAA+AGG | 0.504127 | 1.2:+74896720 | MS.gene34123:CDS |
| TGGAACAGAAGAGGATGAAA+GGG | 0.511909 | 1.2:+74896721 | MS.gene34123:CDS |
| ACAAAATTGGGAGTGATAAG+AGG | 0.513673 | 1.2:-74896890 | None:intergenic |
| TTCCAAGCCAGTCTCCGAAA+AGG | 0.514736 | 1.2:+74897537 | MS.gene34123:CDS |
| AAGAGTTTGCTTATGTCCGC+TGG | 0.517104 | 1.2:+74896561 | MS.gene34123:CDS |
| AATGTAGGTGTTTCACAAGA+TGG | 0.518328 | 1.2:+74896461 | MS.gene34123:intron |
| TGATAAATGCATCGATGAAA+GGG | 0.518562 | 1.2:-74895851 | None:intergenic |
| CGAAAGCGGCGAAGAATATG+TGG | 0.522848 | 1.2:+74896536 | MS.gene34123:CDS |
| ATCTTCCTCAGTTAGAAGAA+TGG | 0.522871 | 1.2:+74897357 | MS.gene34123:CDS |
| TAGCGGTTGCAAGTGTACTT+TGG | 0.525421 | 1.2:-74892423 | None:intergenic |
| CAATTAGGGCACGCTCTGGT+AGG | 0.534555 | 1.2:-74892493 | None:intergenic |
| CATATTATCTCTTGATCAGA+TGG | 0.535616 | 1.2:-74895786 | None:intergenic |
| ACTACACTTAAAAGGGATGA+TGG | 0.538363 | 1.2:+74895873 | MS.gene34123:CDS |
| ACAGAAGAGGATGAAAGGGA+AGG | 0.539188 | 1.2:+74896725 | MS.gene34123:CDS |
| TGGCACTTGCTTGCAAAAGT+TGG | 0.539348 | 1.2:+74895807 | MS.gene34123:CDS |
| AGAAACTCACCGTATTCCTC+TGG | 0.540640 | 1.2:+74896925 | MS.gene34123:CDS |
| ACTCATCCTCAGCATTTACC+AGG | 0.541773 | 1.2:+74895906 | MS.gene34123:CDS |
| TGAACTCCGTTCAAGAGGAT+AGG | 0.542351 | 1.2:-74896605 | None:intergenic |
| TCTTTCCAGTCTTGTGCCAG+CGG | 0.546974 | 1.2:-74896577 | None:intergenic |
| AACTCAAATTAATGAAGTGA+TGG | 0.547508 | 1.2:+74897439 | MS.gene34123:CDS |
| TTGACAATTAGGGCACGCTC+TGG | 0.548349 | 1.2:-74892497 | None:intergenic |
| ATTGGATTCACAGCAACTCC+CGG | 0.551946 | 1.2:+74897487 | MS.gene34123:CDS |
| AATCCAATAGATTCAGCGGC+AGG | 0.553356 | 1.2:-74897472 | None:intergenic |
| GAGTGGCCTGGACTTCCTAA+AGG | 0.554416 | 1.2:+74895750 | MS.gene34123:CDS |
| CTTACAGGAATTCAGCTCAC+AGG | 0.554736 | 1.2:+74897813 | MS.gene34123:intron |
| CAGAAGAGGATGAAAGGGAA+GGG | 0.555884 | 1.2:+74896726 | MS.gene34123:CDS |
| ATGCAGACCATCGTGGTTGG+TGG | 0.556083 | 1.2:+74892399 | MS.gene34123:intron |
| CTTTCTGAACTCCGTTCAAG+AGG | 0.557124 | 1.2:-74896610 | None:intergenic |
| CTCTTGAACGGAGTTCAGAA+AGG | 0.558625 | 1.2:+74896611 | MS.gene34123:CDS |
| CCCTAATTGTCAACATGTTG+TGG | 0.563512 | 1.2:+74892507 | MS.gene34123:CDS |
| GTGATAAATGCATCGATGAA+AGG | 0.567753 | 1.2:-74895852 | None:intergenic |
| GTTCGCAATAGCTGCTTCCG+CGG | 0.573666 | 1.2:-74896828 | None:intergenic |
| AGTGATAAGAGGAGGTTGAG+TGG | 0.574203 | 1.2:-74896879 | None:intergenic |
| TTGCTTGCAAAAGTTGGTGA+AGG | 0.575602 | 1.2:+74895813 | MS.gene34123:CDS |
| TAGGTAACACAAGAGTGGCC+TGG | 0.577846 | 1.2:+74895738 | MS.gene34123:intron |
| TGATCATATGTCGAAAGACT+AGG | 0.579621 | 1.2:-74897590 | None:intergenic |
| ACTAAACCTATCCTCTTGAA+CGG | 0.595352 | 1.2:+74896599 | MS.gene34123:CDS |
| TTCAGATGCACGCCTTATAG+CGG | 0.597354 | 1.2:-74892440 | None:intergenic |
| TCAAGATGTTCCTGAAACCG+CGG | 0.615209 | 1.2:+74896811 | MS.gene34123:CDS |
| CAGTTGACTTAATCGAATGT+CGG | 0.615405 | 1.2:-74897699 | None:intergenic |
| GTATCATCTTGGAACAGAAG+AGG | 0.624650 | 1.2:+74896712 | MS.gene34123:CDS |
| AGTAGCCATTCTTCTAACTG+AGG | 0.625387 | 1.2:-74897362 | None:intergenic |
| CAAGCTCTACATTGCCAGTG+TGG | 0.625427 | 1.2:-74897664 | None:intergenic |
| CCAGTCTCCGAAAAGGCACA+GGG | 0.626166 | 1.2:+74897544 | MS.gene34123:CDS |
| TATCCACCTGGTAAATGCTG+AGG | 0.629144 | 1.2:-74895912 | None:intergenic |
| TATATGCAGACCATCGTGGT+TGG | 0.636765 | 1.2:+74892396 | MS.gene34123:intron |
| CATATGTCGAAAGACTAGGC+TGG | 0.640562 | 1.2:-74897586 | None:intergenic |
| GTTGTTAGGTAACACAAGAG+TGG | 0.643631 | 1.2:+74895733 | MS.gene34123:intron |
| ATAGTACTGGAAGTCGAAAG+CGG | 0.647551 | 1.2:+74896522 | MS.gene34123:CDS |
| AATGCATCGATGAAAGGGTG+CGG | 0.648814 | 1.2:-74895846 | None:intergenic |
| TATATGTTTCCAGAGAATGG+AGG | 0.668040 | 1.2:+74896656 | MS.gene34123:CDS |
| AGAGCAGTTGAAGAAAGACA+TGG | 0.671161 | 1.2:+74897622 | MS.gene34123:CDS |
| AAATTGGGAGTGATAAGAGG+AGG | 0.672950 | 1.2:-74896887 | None:intergenic |
| TGCCAAAATCTTGACCACAC+TGG | 0.673910 | 1.2:+74897650 | MS.gene34123:CDS |
| TGTGAATCCAATAGATTCAG+CGG | 0.674006 | 1.2:-74897476 | None:intergenic |
| CTTATATATGCAGACCATCG+TGG | 0.676574 | 1.2:+74892392 | MS.gene34123:intron |
| CTTTGGTCCACCAACCACGA+TGG | 0.684049 | 1.2:-74892406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 74890795 | 74897846 | 74890795 | ID=MS.gene34123 |
| chr1.2 | mRNA | 74890795 | 74897846 | 74890795 | ID=MS.gene34123.t1;Parent=MS.gene34123 |
| chr1.2 | exon | 74890795 | 74890802 | 74890795 | ID=MS.gene34123.t1.exon1;Parent=MS.gene34123.t1 |
| chr1.2 | CDS | 74890795 | 74890802 | 74890795 | ID=cds.MS.gene34123.t1;Parent=MS.gene34123.t1 |
| chr1.2 | exon | 74892405 | 74892540 | 74892405 | ID=MS.gene34123.t1.exon2;Parent=MS.gene34123.t1 |
| chr1.2 | CDS | 74892405 | 74892540 | 74892405 | ID=cds.MS.gene34123.t1;Parent=MS.gene34123.t1 |
| chr1.2 | exon | 74895741 | 74895927 | 74895741 | ID=MS.gene34123.t1.exon3;Parent=MS.gene34123.t1 |
| chr1.2 | CDS | 74895741 | 74895927 | 74895741 | ID=cds.MS.gene34123.t1;Parent=MS.gene34123.t1 |
| chr1.2 | exon | 74896468 | 74896946 | 74896468 | ID=MS.gene34123.t1.exon4;Parent=MS.gene34123.t1 |
| chr1.2 | CDS | 74896468 | 74896946 | 74896468 | ID=cds.MS.gene34123.t1;Parent=MS.gene34123.t1 |
| chr1.2 | exon | 74897347 | 74897721 | 74897347 | ID=MS.gene34123.t1.exon5;Parent=MS.gene34123.t1 |
| chr1.2 | CDS | 74897347 | 74897721 | 74897347 | ID=cds.MS.gene34123.t1;Parent=MS.gene34123.t1 |
| chr1.2 | exon | 74897820 | 74897846 | 74897820 | ID=MS.gene34123.t1.exon6;Parent=MS.gene34123.t1 |
| chr1.2 | CDS | 74897820 | 74897846 | 74897820 | ID=cds.MS.gene34123.t1;Parent=MS.gene34123.t1 |
| Gene Sequence |
| Protein sequence |