AlfalfaGEDB | MS.gene34297

M. sativa cultivar XinJiangDaYe / MS.gene34297

KEGG: K08835
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34297.t1	XP_003604125.2	100	132	0	0	1	132	74	205	1.00E-73	285.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34297.t1	Q551H4	59.4	128	50	1	1	128	122	247	1.3e-40	167.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34297.t1	A0A072UGH4	100.0	132	0	0	1	132	74	205	7.3e-74	285.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34297.t1	MTR_4g005730	100.000	132	0	0	1	132	74	205	1.30e-96	292
MS.gene34297.t1	MTR_4g005730	100.000	132	0	0	1	132	74	205	1.63e-96	292
MS.gene34297.t1	MTR_4g005730	100.000	132	0	0	1	132	74	205	1.73e-96	292
MS.gene34297.t1	MTR_6g006770	77.273	132	30	0	1	132	66	197	1.98e-79	246
MS.gene34297.t1	MTR_1g077800	71.212	132	38	0	1	132	65	196	1.24e-70	224
MS.gene34297.t1	MTR_1g077800	71.212	132	38	0	1	132	65	196	2.62e-70	224
MS.gene34297.t1	MTR_2g100030	45.946	148	64	1	1	132	69	216	3.45e-43	148
MS.gene34297.t1	MTR_2g078740	45.600	125	63	2	7	131	71	190	4.24e-33	122
MS.gene34297.t1	MTR_2g078740	45.600	125	63	2	7	131	71	190	4.25e-33	122
MS.gene34297.t1	MTR_2g078740	45.600	125	63	2	7	131	71	190	4.25e-33	122

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34297.t1	AT1G79640	87.879	132	16	1	132	63	194	3.06e-89	272
MS.gene34297.t1	AT1G79640	87.879	132	16	1	132	63	194	3.39e-89	272
MS.gene34297.t1	AT1G79640	87.879	132	16	1	132	63	194	3.39e-89	272
MS.gene34297.t1	AT1G79640	87.879	132	16	1	132	63	194	3.39e-89	272
MS.gene34297.t1	AT1G79640	87.879	132	16	1	132	66	197	3.62e-89	272
MS.gene34297.t1	AT1G79640	87.879	132	16	1	132	63	194	3.70e-89	272
MS.gene34297.t1	AT5G14720	78.030	132	29	1	132	66	197	1.11e-79	247
MS.gene34297.t1	AT5G14720	78.030	132	29	1	132	66	197	1.11e-79	247
MS.gene34297.t1	AT1G70430	70.455	132	39	1	132	1	132	1.38e-73	228
MS.gene34297.t1	AT1G70430	70.455	132	39	1	132	66	197	5.63e-73	228

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Find 31 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTTCTCATTGATTCTCG+CGG	0.630750	4.3:-88879428	MS.gene34297:CDS
ACAACCTCTTCAAATCCATC+AGG	0.507515	4.3:+88879536	None:intergenic
ACATCCTGATGGATTTGAAG+AGG	0.660408	4.3:-88879540	MS.gene34297:CDS
ACTTCAGGTGCCATCCAACA+AGG	0.623154	4.3:+88879317	None:intergenic
AGCACAAACAATGGTACTAG+TGG	0.606035	4.3:-88879672	None:intergenic
ATTCACCGTGACGTTAAGGC+GGG	0.618593	4.3:-88879452	MS.gene34297:CDS
CATGAACCACCCGACATGAA+TGG	0.505530	4.3:+88879584	None:intergenic
CATTACCCGCCTTAACGTCA+CGG	0.662342	4.3:+88879447	None:intergenic
CATTCACCGTGACGTTAAGG+CGG	0.581836	4.3:-88879453	MS.gene34297:CDS
CGTGAGTGATCACAATCTAT+GGG	0.561302	4.3:-88879615	MS.gene34297:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGTTTGATTCTGGTGAT+CGG	-	chr4.3:88879579-88879598	MS.gene34297:CDS	35.0%
TCTGCTTGTTTGTTTGATTC+TGG	-	chr4.3:88879572-88879591	MS.gene34297:CDS	35.0%
ACAACCTCTTCAAATCCATC+AGG	+	chr4.3:88879416-88879435	None:intergenic	40.0%
CGTGAGTGATCACAATCTAT+GGG	-	chr4.3:88879334-88879353	MS.gene34297:CDS	40.0%
TCGTGAGTGATCACAATCTA+TGG	-	chr4.3:88879333-88879352	MS.gene34297:CDS	40.0%
TGTTATTGCAACTGTGCTCA+GGG	-	chr4.3:88879433-88879452	MS.gene34297:CDS	40.0%
GAAGTCATGGAGCAATTGCA+TGG	-	chr4.3:88879650-88879669	MS.gene34297:CDS	45.0%
GGTTGTGATGCCATTCATGT+CGG	-	chr4.3:88879355-88879374	MS.gene34297:CDS	45.0%
GTTGTGATGCCATTCATGTC+GGG	-	chr4.3:88879356-88879375	MS.gene34297:CDS	45.0%
TCACATTCACCGTGACGTTA+AGG	-	chr4.3:88879493-88879512	MS.gene34297:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	88879287	88879684	88879287	ID=MS.gene34297
chr4.3	mRNA	88879287	88879684	88879287	ID=MS.gene34297.t1;Parent=MS.gene34297
chr4.3	exon	88879287	88879684	88879287	ID=MS.gene34297.t1.exon1;Parent=MS.gene34297.t1
chr4.3	CDS	88879287	88879684	88879287	ID=cds.MS.gene34297.t1;Parent=MS.gene34297.t1

Gene Sequence

>MS.gene34297

ATGGTACTAGTGGACCACCCTAACGTGCTAAAATCACACTGCTCATTCGTGAGTGATCACAATCTATGGGTTGTGATGCCATTCATGTCGGGTGGTTCATGTCTTCACATATTGAAAGCTGCACATCCTGATGGATTTGAAGAGGTTGTTATTGCAACTGTGCTCAGGGAGGTATTGAAAGGTTTAGAGTATCTTCATCATCATGGTCACATTCACCGTGACGTTAAGGCGGGTAATGTTCTCATTGATTCTCGCGGTGCGGTTAAGCTCGGTGATTTCGGTGTTTCTGCTTGTTTGTTTGATTCTGGTGATCGGCAACGGTCGAGAAATACTTTTGTTGGTACACCTTGTTGGATGGCACCTGAAGTCATGGAGCAATTGCATGGTTATAACTTCAA

Protein sequence

>MS.gene34297.t1

MVLVDHPNVLKSHCSFVSDHNLWVVMPFMSGGSCLHILKAAHPDGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNVLIDSRGAVKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYNF