AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34387

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34387.t1 MTR_1g102860 93.939 330 16 1 1 326 1 330 0.0 635
MS.gene34387.t1 MTR_7g095680 53.571 336 125 6 17 323 26 359 2.30e-109 323
MS.gene34387.t1 MTR_3g104550 63.426 216 72 4 27 240 33 243 2.87e-91 277
MS.gene34387.t1 MTR_5g029680 58.744 223 80 4 27 239 19 239 4.57e-82 257
MS.gene34387.t1 MTR_1g071360 49.032 310 122 8 23 307 15 313 2.89e-76 238
MS.gene34387.t1 MTR_1g071360 48.875 311 121 9 23 307 12 310 5.68e-76 238
MS.gene34387.t1 MTR_4g077970 56.667 210 80 4 39 240 11 217 7.04e-72 231
MS.gene34387.t1 MTR_1g061170 52.315 216 99 3 27 242 36 247 1.10e-69 224
MS.gene34387.t1 MTR_8g087540 38.062 289 159 5 39 318 11 288 1.35e-56 188
MS.gene34387.t1 MTR_8g105780 50.500 200 85 6 40 227 22 219 1.39e-52 177
MS.gene34387.t1 MTR_6g086805 43.627 204 108 3 40 243 11 207 6.76e-52 175
MS.gene34387.t1 MTR_2g100670 44.737 190 96 2 34 220 27 210 2.04e-51 172
MS.gene34387.t1 MTR_2g100670 44.737 190 96 2 34 220 135 318 2.56e-50 172
MS.gene34387.t1 MTR_6g043060 42.478 226 115 5 40 262 22 235 8.33e-50 169
MS.gene34387.t1 MTR_2g100680 40.271 221 118 4 25 240 14 225 1.70e-49 171
MS.gene34387.t1 MTR_8g083100 45.545 202 98 5 41 239 23 215 2.34e-48 169
MS.gene34387.t1 MTR_2g017890 41.270 189 105 2 31 214 6 193 2.53e-42 150
MS.gene34387.t1 MTR_3g101870 65.049 103 36 0 34 136 18 120 3.71e-41 147
MS.gene34387.t1 MTR_5g089170 71.579 95 27 0 38 132 23 117 1.12e-40 143
MS.gene34387.t1 MTR_5g010680 64.894 94 33 0 38 131 22 115 1.09e-37 138
MS.gene34387.t1 MTR_1g100777 62.766 94 35 0 38 131 16 109 3.76e-37 135
MS.gene34387.t1 MTR_0020s0020 62.766 94 35 0 38 131 31 124 3.88e-37 136
MS.gene34387.t1 MTR_7g091370 52.941 119 49 2 31 142 9 127 1.13e-35 129
MS.gene34387.t1 MTR_5g017470 60.417 96 38 0 37 132 6 101 6.42e-35 129
MS.gene34387.t1 MTR_4g088900 42.331 163 85 3 38 193 31 191 1.47e-32 120
MS.gene34387.t1 MTR_1g061170 45.185 135 72 2 97 231 11 143 9.42e-31 119
MS.gene34387.t1 MTR_4g045757 61.194 67 26 0 31 97 5 71 7.14e-21 85.5
MS.gene34387.t1 MTR_2g043940 34.266 143 73 5 80 214 11 140 1.12e-14 74.3
MS.gene34387.t1 MTR_5g047190 41.304 92 47 2 48 132 1 92 1.22e-14 69.3
MS.gene34387.t1 MTR_6g044340 28.846 156 100 4 92 244 14 161 3.86e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34387.t1 AT3G22830 52.355 361 112 6 22 323 43 402 7.90e-120 351
MS.gene34387.t1 AT2G26150 43.252 326 146 9 27 324 31 345 9.68e-86 262
MS.gene34387.t1 AT2G26150 43.252 326 146 9 27 324 31 345 9.68e-86 262
MS.gene34387.t1 AT3G51910 57.820 211 74 3 31 240 20 216 1.66e-81 248
MS.gene34387.t1 AT4G17750 53.414 249 90 6 16 240 22 268 7.30e-78 246
MS.gene34387.t1 AT5G16820 58.065 217 82 3 36 244 23 238 9.85e-77 243
MS.gene34387.t1 AT5G16820 58.065 217 82 3 36 244 23 238 9.85e-77 243
MS.gene34387.t1 AT1G32330 53.750 240 94 4 16 239 11 249 3.11e-76 242
MS.gene34387.t1 AT1G32330 53.750 240 94 4 16 239 11 249 3.22e-76 242
MS.gene34387.t1 AT5G43840 57.732 194 69 1 27 220 6 186 2.89e-75 233
MS.gene34387.t1 AT3G02990 56.604 212 85 2 39 244 22 232 2.28e-73 234
MS.gene34387.t1 AT3G63350 51.339 224 90 3 18 233 6 218 3.62e-73 228
MS.gene34387.t1 AT5G03720 41.091 275 161 1 14 288 29 302 2.37e-64 209
MS.gene34387.t1 AT5G03720 41.091 275 161 1 14 288 29 302 2.37e-64 209
MS.gene34387.t1 AT1G67970 48.837 215 101 5 40 248 19 230 3.87e-58 192
MS.gene34387.t1 AT3G24520 44.059 202 91 3 40 241 17 196 7.56e-51 172
MS.gene34387.t1 AT4G13980 43.350 203 102 3 41 239 24 217 3.08e-49 171
MS.gene34387.t1 AT5G54070 40.708 226 122 4 33 254 63 280 6.52e-48 164
MS.gene34387.t1 AT2G41690 39.216 204 107 4 13 209 23 216 2.35e-41 144
MS.gene34387.t1 AT4G18880 44.792 192 102 2 32 220 7 197 3.94e-41 148
MS.gene34387.t1 AT1G46264 64.423 104 37 0 31 134 25 128 8.55e-41 145
MS.gene34387.t1 AT5G45710 41.624 197 110 3 39 232 12 206 1.10e-40 145
MS.gene34387.t1 AT5G45710 41.624 197 110 3 39 232 12 206 1.10e-40 145
MS.gene34387.t1 AT2G26150 50.345 145 68 3 100 241 49 192 9.61e-39 139
MS.gene34387.t1 AT2G26150 50.345 145 68 3 100 241 49 192 9.61e-39 139
MS.gene34387.t1 AT4G11660 60.825 97 38 0 38 134 57 153 8.42e-38 139
MS.gene34387.t1 AT4G36990 54.464 112 47 1 38 149 12 119 4.23e-36 132
MS.gene34387.t1 AT5G62020 61.702 94 36 0 38 131 21 114 1.34e-35 131
MS.gene34387.t1 AT4G18870 37.097 124 75 1 29 149 135 258 6.83e-21 91.3
MS.gene34387.t1 AT4G18870 48.315 89 41 2 41 127 14 99 1.08e-19 87.8
MS.gene34387.t1 AT4G19630 39.623 106 52 4 36 131 7 110 1.62e-13 67.0
MS.gene34387.t1 AT1G77570 37.778 90 53 2 41 127 27 116 4.98e-12 63.5

Find 68 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCAAAGCCTCCTATTT+AGG 0.202422 1.2:+76550102 None:intergenic
ACTAACTGTTGCAAGAAATT+AGG 0.251206 1.2:+76550435 None:intergenic
GGAACAATAGCTTTGTTGTT+TGG 0.274853 1.2:-76551570 MS.gene34387:CDS
TAAATTGTAGGGGTTTAAAA+AGG 0.303820 1.2:-76550787 MS.gene34387:intron
TTCAAGTTGATTAATTTGAT+TGG 0.327468 1.2:+76550242 None:intergenic
GTTGATGCAGATGTTGAATT+AGG 0.327469 1.2:-76550330 MS.gene34387:CDS
GAACAATAGCTTTGTTGTTT+GGG 0.327590 1.2:-76551569 MS.gene34387:CDS
TAAGAGATACTGAAGTGTTT+TGG 0.339566 1.2:-76550218 MS.gene34387:CDS
CCACAAATCATATAGTTTCA+TGG 0.352549 1.2:-76551600 MS.gene34387:CDS
TGCCTCTAGTCCTCCTAAAT+AGG 0.370362 1.2:-76550115 None:intergenic
ATTAAGTTGCCGGACAAAAC+TGG 0.370804 1.2:+76551489 None:intergenic
CTTGTCTGTCGCGCCTCAAC+CGG 0.383841 1.2:+76550598 None:intergenic
TTGTTGTGCTTGAAGAATCT+AGG 0.383883 1.2:+76551517 None:intergenic
TGTGTTGAGCTGGGAAGGTT+TGG 0.384498 1.2:-76550642 MS.gene34387:CDS
CATATAGTTTCATGGAGTAC+TGG 0.392040 1.2:-76551592 MS.gene34387:CDS
AAAACAGATGATGAATTTCA+TGG 0.398561 1.2:-76550475 MS.gene34387:CDS
GGAATGGAGAAAAGAGTTAG+AGG 0.408095 1.2:-76550403 MS.gene34387:CDS
TTCTTCTAATGTTCTTCAAA+AGG 0.412252 1.2:+76550709 None:intergenic
CCATGAAACTATATGATTTG+TGG 0.413159 1.2:+76551600 None:intergenic
AGGGAAGGACTTCATGAAAA+TGG 0.418874 1.2:-76551670 MS.gene34387:CDS
TCACATAGGTATTAAGTTGC+CGG 0.435323 1.2:+76551479 None:intergenic
TGAAGTCCTTCCCTTGGTTG+AGG 0.441996 1.2:+76551679 None:intergenic
ACATCTGCATCAACATTACT+AGG 0.447700 1.2:+76550339 None:intergenic
TATTGAAGATGTTGATGTAT+TGG 0.457804 1.2:-76550157 MS.gene34387:CDS
GCTAATGAGATGTTTCTAAG+AGG 0.461550 1.2:-76550741 MS.gene34387:CDS
GGGATGAAGGAGGAGTTTGT+TGG 0.463474 1.2:-76551733 MS.gene34387:CDS
ATCTTGAAGCAATGGAAAGA+AGG 0.466935 1.2:-76550521 MS.gene34387:CDS
GAATCGAAGTGGACCGGTTG+AGG 0.470687 1.2:-76550611 MS.gene34387:CDS
ATGAATATGAATCTTCATCA+TGG 0.483530 1.2:-76551757 MS.gene34387:CDS
CGTCATGTGTTGAGCTGGGA+AGG 0.490133 1.2:-76550647 MS.gene34387:CDS
GCGCGACAGACAAGTTCTAA+TGG 0.493467 1.2:-76550589 MS.gene34387:CDS
AAAGGTTGATGCAGATAGGT+GGG 0.494489 1.2:-76550769 MS.gene34387:CDS
AGACCCGTCATGTGTTGAGC+TGG 0.495058 1.2:-76550652 MS.gene34387:CDS
ATGAAGGAGGAGTTTGTTGG+AGG 0.495698 1.2:-76551730 MS.gene34387:CDS
AGTTAGTTCAGCAGAAGGAA+TGG 0.496467 1.2:-76550419 MS.gene34387:CDS
AGGTTCACCAACCACAGAAA+AGG 0.504219 1.2:+76551699 None:intergenic
AGGGAGAAGAATAATAGAAA+AGG 0.505225 1.2:+76551537 None:intergenic
TGTTGTGCTTGAAGAATCTA+GGG 0.511168 1.2:+76551518 None:intergenic
TCTTCATCATGGTGGGATGA+AGG 0.511768 1.2:-76551746 MS.gene34387:CDS
ATCAAAGCCTCCTATTTAGG+AGG 0.518160 1.2:+76550105 None:intergenic
ACAAGTTCTAATGGTTGAGT+TGG 0.523658 1.2:-76550580 MS.gene34387:CDS
TGGCAAGATTTGTTTAAGGA+GGG 0.525419 1.2:-76550198 MS.gene34387:CDS
CTGGGAAGGTTTGGATTAGA+CGG 0.525469 1.2:-76550633 MS.gene34387:CDS
TTGGCAAGATTTGTTTAAGG+AGG 0.525683 1.2:-76550199 MS.gene34387:CDS
TAGAACTCATCTTGAAGCAA+TGG 0.536822 1.2:-76550529 MS.gene34387:CDS
AAAAGGTTGATGCAGATAGG+TGG 0.546223 1.2:-76550770 MS.gene34387:CDS
TTCCCAGCTCAACACATGAC+GGG 0.552361 1.2:+76550649 None:intergenic
GATGATGAATTTCATGGCAA+GGG 0.556515 1.2:-76550469 MS.gene34387:CDS
ATATAGTTTCATGGAGTACT+GGG 0.559738 1.2:-76551591 MS.gene34387:CDS
GACCCGTCATGTGTTGAGCT+GGG 0.564277 1.2:-76550651 MS.gene34387:CDS
AGATGATGAATTTCATGGCA+AGG 0.575521 1.2:-76550470 MS.gene34387:CDS
CTTCCCAGCTCAACACATGA+CGG 0.580827 1.2:+76550648 None:intergenic
CTCCTATTTAGGAGGACTAG+AGG 0.581849 1.2:+76550113 None:intergenic
GCAACAGTTAGTTCAGCAGA+AGG 0.585939 1.2:-76550424 MS.gene34387:CDS
TGAACAACATCAAGATGTTG+AGG 0.592174 1.2:-76550271 MS.gene34387:CDS
AGAATAATAGAAAAGGCTTG+AGG 0.598445 1.2:+76551544 None:intergenic
TGGATTAGACGGAATCGAAG+TGG 0.602364 1.2:-76550622 MS.gene34387:CDS
GATGTATTGGCTGAGCAACT+TGG 0.605475 1.2:-76550144 MS.gene34387:CDS
AATATGAATCTTCATCATGG+TGG 0.612258 1.2:-76551754 MS.gene34387:CDS
TAGACGGAATCGAAGTGGAC+CGG 0.614296 1.2:-76550617 MS.gene34387:CDS
GAAACTATATGATTTGTGGA+AGG 0.623337 1.2:+76551604 None:intergenic
AGAAGGAGAACTATTGACGA+AGG 0.628728 1.2:-76550363 MS.gene34387:CDS
GAAGGAGAACTATTGACGAA+GGG 0.637249 1.2:-76550362 MS.gene34387:CDS
ATATGAATCTTCATCATGGT+GGG 0.643772 1.2:-76551753 MS.gene34387:CDS
TCATCATGGTGGGATGAAGG+AGG 0.650270 1.2:-76551743 MS.gene34387:CDS
GGTGAACCTCAACCAAGGGA+AGG 0.659511 1.2:-76551685 MS.gene34387:CDS
TGGTTGGTGAACCTCAACCA+AGG 0.664718 1.2:-76551690 MS.gene34387:CDS
GGTTGGTGAACCTCAACCAA+GGG 0.679182 1.2:-76551689 MS.gene34387:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGAAATTAAATTGTA+GGG - chr1.2:76551075-76551094 MS.gene34387:intron 10.0%
!!! AACATTTTTGTTTCATTATA+TGG - chr1.2:76550548-76550567 MS.gene34387:CDS 15.0%
!!! AATTTGAAATTAAATTGTAG+GGG - chr1.2:76551076-76551095 MS.gene34387:intron 15.0%
!!! GAAATTTGAAATTAAATTGT+AGG - chr1.2:76551074-76551093 MS.gene34387:intron 15.0%
!! AAACAAACACTAATTAACAT+TGG + chr1.2:76551008-76551027 None:intergenic 20.0%
!! ATGGAATAATGTAGTAATAA+AGG - chr1.2:76550567-76550586 MS.gene34387:CDS 20.0%
!!! AAATTTTTTCTAAGAAGAGA+AGG - chr1.2:76551493-76551512 MS.gene34387:CDS 20.0%
!!! TAGTAATAAAGGCTATTTTT+GGG - chr1.2:76550578-76550597 MS.gene34387:CDS 20.0%
!!! TTCAAGTTGATTAATTTGAT+TGG + chr1.2:76551634-76551653 None:intergenic 20.0%
!!! TTTGACTTTTCTCTATATTA+GGG + chr1.2:76550695-76550714 None:intergenic 20.0%
!!! TTTTGACTTTTCTCTATATT+AGG + chr1.2:76550696-76550715 None:intergenic 20.0%
! AAAACAGATGATGAATTTCA+TGG - chr1.2:76551398-76551417 MS.gene34387:intron 25.0%
! AAAAGTCAAAATGTATTGGA+CGG - chr1.2:76550705-76550724 MS.gene34387:CDS 25.0%
! AGAGAAAAGTCAAAATGTAT+TGG - chr1.2:76550701-76550720 MS.gene34387:CDS 25.0%
! ATGAATATGAATCTTCATCA+TGG - chr1.2:76550116-76550135 MS.gene34387:CDS 25.0%
! TAAATTGTAGGGGTTTAAAA+AGG - chr1.2:76551086-76551105 MS.gene34387:intron 25.0%
! TATCTCATCAGATTAAACAA+AGG + chr1.2:76550479-76550498 None:intergenic 25.0%
! TATTGAAGATGTTGATGTAT+TGG - chr1.2:76551716-76551735 MS.gene34387:CDS 25.0%
! TTAAATACTACTACTCACAT+AGG + chr1.2:76550411-76550430 None:intergenic 25.0%
! TTCTTCTAATGTTCTTCAAA+AGG + chr1.2:76551167-76551186 None:intergenic 25.0%
! TTGTTTAATCTGATGAGATA+AGG - chr1.2:76550479-76550498 MS.gene34387:CDS 25.0%
!! GTTTTCATTGAATGGAATTA+TGG - chr1.2:76551024-76551043 MS.gene34387:intron 25.0%
!!! ATTGTGTGAGTTATTTTTCT+TGG - chr1.2:76550656-76550675 MS.gene34387:CDS 25.0%
!!! CTATATCATATGTTTTTGTG+AGG + chr1.2:76550241-76550260 None:intergenic 25.0%
!!! GCATTTTGATTTGAAAATGA+AGG - chr1.2:76551050-76551069 MS.gene34387:intron 25.0%
!!! GTAGTAATAAAGGCTATTTT+TGG - chr1.2:76550577-76550596 MS.gene34387:CDS 25.0%
!!! TAGTGTTTGTTTTCATTGAA+TGG - chr1.2:76551016-76551035 MS.gene34387:intron 25.0%
AAACACGACATTGATACATT+TGG - chr1.2:76550901-76550920 MS.gene34387:intron 30.0%
AAAGTCAAAATGTATTGGAC+GGG - chr1.2:76550706-76550725 MS.gene34387:CDS 30.0%
AATATGAATCTTCATCATGG+TGG - chr1.2:76550119-76550138 MS.gene34387:CDS 30.0%
ACTAACTGTTGCAAGAAATT+AGG + chr1.2:76551441-76551460 None:intergenic 30.0%
AGAATAATAGAAAAGGCTTG+AGG + chr1.2:76550332-76550351 None:intergenic 30.0%
AGGGAGAAGAATAATAGAAA+AGG + chr1.2:76550339-76550358 None:intergenic 30.0%
ATATGAATCTTCATCATGGT+GGG - chr1.2:76550120-76550139 MS.gene34387:CDS 30.0%
ATTGTCTCTTATGATGAGAA+GGG + chr1.2:76550511-76550530 None:intergenic 30.0%
CCACAAATCATATAGTTTCA+TGG - chr1.2:76550273-76550292 MS.gene34387:CDS 30.0%
CCATGAAACTATATGATTTG+TGG + chr1.2:76550276-76550295 None:intergenic 30.0%
GTAGATAATATGACATCACA+AGG - chr1.2:76550822-76550841 MS.gene34387:intron 30.0%
TATTGTCTCTTATGATGAGA+AGG + chr1.2:76550512-76550531 None:intergenic 30.0%
! ATATAGTTTCATGGAGTACT+GGG - chr1.2:76550282-76550301 MS.gene34387:CDS 30.0%
! CTTTGGAAAGAAATGAATGA+AGG - chr1.2:76550617-76550636 MS.gene34387:CDS 30.0%
! GAAACTATATGATTTGTGGA+AGG + chr1.2:76550272-76550291 None:intergenic 30.0%
!! GAACAATAGCTTTGTTGTTT+GGG - chr1.2:76550304-76550323 MS.gene34387:CDS 30.0%
!! GTTTTGGCAAGATTTGTTTA+AGG - chr1.2:76551671-76551690 MS.gene34387:CDS 30.0%
!! TAAGAGATACTGAAGTGTTT+TGG - chr1.2:76551655-76551674 MS.gene34387:CDS 30.0%
!! TCATATGTTTTTGTGAGGAA+TGG + chr1.2:76550236-76550255 None:intergenic 30.0%
!! TTAAAAAGGTTGATGCAGAT+AGG - chr1.2:76551100-76551119 MS.gene34387:intron 30.0%
AAGTCAAAATGTATTGGACG+GGG - chr1.2:76550707-76550726 MS.gene34387:CDS 35.0%
ACATCTGCATCAACATTACT+AGG + chr1.2:76551537-76551556 None:intergenic 35.0%
AGATGATGAATTTCATGGCA+AGG - chr1.2:76551403-76551422 MS.gene34387:intron 35.0%
ATCTTGAAGCAATGGAAAGA+AGG - chr1.2:76551352-76551371 MS.gene34387:intron 35.0%
CATATAGTTTCATGGAGTAC+TGG - chr1.2:76550281-76550300 MS.gene34387:CDS 35.0%
CTAATGATTGAGAACATGTC+TGG - chr1.2:76550863-76550882 MS.gene34387:intron 35.0%
GAGTTAGGAATGAATGACTT+TGG - chr1.2:76550600-76550619 MS.gene34387:CDS 35.0%
GATGATGAATTTCATGGCAA+GGG - chr1.2:76551404-76551423 MS.gene34387:intron 35.0%
GTTGATGCAGATGTTGAATT+AGG - chr1.2:76551543-76551562 MS.gene34387:CDS 35.0%
TAACATTGGCATAGACATAG+AGG + chr1.2:76550994-76551013 None:intergenic 35.0%
TAGAACTCATCTTGAAGCAA+TGG - chr1.2:76551344-76551363 MS.gene34387:intron 35.0%
TGAACAACATCAAGATGTTG+AGG - chr1.2:76551602-76551621 MS.gene34387:CDS 35.0%
TGTTGTGCTTGAAGAATCTA+GGG + chr1.2:76550358-76550377 None:intergenic 35.0%
TTGTTGTGCTTGAAGAATCT+AGG + chr1.2:76550359-76550378 None:intergenic 35.0%
! ACAAGTTCTAATGGTTGAGT+TGG - chr1.2:76551293-76551312 MS.gene34387:intron 35.0%
! GCTAATGAGATGTTTCTAAG+AGG - chr1.2:76551132-76551151 MS.gene34387:intron 35.0%
! TCACATAGGTATTAAGTTGC+CGG + chr1.2:76550397-76550416 None:intergenic 35.0%
! TGGCAAGATTTGTTTAAGGA+GGG - chr1.2:76551675-76551694 MS.gene34387:CDS 35.0%
! TTGGCAAGATTTGTTTAAGG+AGG - chr1.2:76551674-76551693 MS.gene34387:CDS 35.0%
!! ACAATTTCTCCAGTTTTGTC+CGG - chr1.2:76550375-76550394 MS.gene34387:CDS 35.0%
!! GGAACAATAGCTTTGTTGTT+TGG - chr1.2:76550303-76550322 MS.gene34387:CDS 35.0%
!! TATGTTTTTGTGAGGAATGG+TGG + chr1.2:76550233-76550252 None:intergenic 35.0%
!!! AAAGGCTATTTTTGGGAGTT+AGG - chr1.2:76550585-76550604 MS.gene34387:CDS 35.0%
AGAAGGAGAACTATTGACGA+AGG - chr1.2:76551510-76551529 MS.gene34387:CDS 40.0%
AGGGAAGGACTTCATGAAAA+TGG - chr1.2:76550203-76550222 MS.gene34387:CDS 40.0%
AGTTAGTTCAGCAGAAGGAA+TGG - chr1.2:76551454-76551473 MS.gene34387:intron 40.0%
GAAGGAGAACTATTGACGAA+GGG - chr1.2:76551511-76551530 MS.gene34387:CDS 40.0%
GGAATGGAGAAAAGAGTTAG+AGG - chr1.2:76551470-76551489 MS.gene34387:intron 40.0%
! AGGAAGTTCTTCCTTTTCTG+TGG - chr1.2:76550163-76550182 MS.gene34387:CDS 40.0%
! AGTTCTTCCTTTTCTGTGGT+TGG - chr1.2:76550167-76550186 MS.gene34387:CDS 40.0%
! ATTAAGTTGCCGGACAAAAC+TGG + chr1.2:76550387-76550406 None:intergenic 40.0%
! TTTTCATGAAGTCCTTCCCT+TGG + chr1.2:76550203-76550222 None:intergenic 40.0%
!! AAAAGGTTGATGCAGATAGG+TGG - chr1.2:76551103-76551122 MS.gene34387:intron 40.0%
!! AAAGGTTGATGCAGATAGGT+GGG - chr1.2:76551104-76551123 MS.gene34387:intron 40.0%
AGGTTCACCAACCACAGAAA+AGG + chr1.2:76550177-76550196 None:intergenic 45.0%
GCAACAGTTAGTTCAGCAGA+AGG - chr1.2:76551449-76551468 MS.gene34387:intron 45.0%
! CTGGGAAGGTTTGGATTAGA+CGG - chr1.2:76551240-76551259 MS.gene34387:intron 45.0%
! GTTTTTGTGAGGAATGGTGG+AGG + chr1.2:76550230-76550249 None:intergenic 45.0%
! TCTTCATCATGGTGGGATGA+AGG - chr1.2:76550127-76550146 MS.gene34387:CDS 45.0%
! TGGATTAGACGGAATCGAAG+TGG - chr1.2:76551251-76551270 MS.gene34387:intron 45.0%
!! ATGAAGGAGGAGTTTGTTGG+AGG - chr1.2:76550143-76550162 MS.gene34387:CDS 45.0%
!! GATGTATTGGCTGAGCAACT+TGG - chr1.2:76551729-76551748 MS.gene34387:CDS 45.0%
CTTCCCAGCTCAACACATGA+CGG + chr1.2:76551228-76551247 None:intergenic 50.0%
GGGATGAAGGAGGAGTTTGT+TGG - chr1.2:76550140-76550159 MS.gene34387:CDS 50.0%
TAGACGGAATCGAAGTGGAC+CGG - chr1.2:76551256-76551275 MS.gene34387:intron 50.0%
TGAAGTCCTTCCCTTGGTTG+AGG + chr1.2:76550197-76550216 None:intergenic 50.0%
TGTGTTGAGCTGGGAAGGTT+TGG - chr1.2:76551231-76551250 MS.gene34387:intron 50.0%
TTCCCAGCTCAACACATGAC+GGG + chr1.2:76551227-76551246 None:intergenic 50.0%
! GCGCGACAGACAAGTTCTAA+TGG - chr1.2:76551284-76551303 MS.gene34387:intron 50.0%
! TCATCATGGTGGGATGAAGG+AGG - chr1.2:76550130-76550149 MS.gene34387:CDS 50.0%
!! GGTTGGTGAACCTCAACCAA+GGG - chr1.2:76550184-76550203 MS.gene34387:CDS 50.0%
!! TGGTTGGTGAACCTCAACCA+AGG - chr1.2:76550183-76550202 MS.gene34387:CDS 50.0%
AGACCCGTCATGTGTTGAGC+TGG - chr1.2:76551221-76551240 MS.gene34387:intron 55.0%
CGTCATGTGTTGAGCTGGGA+AGG - chr1.2:76551226-76551245 MS.gene34387:intron 55.0%
GAATCGAAGTGGACCGGTTG+AGG - chr1.2:76551262-76551281 MS.gene34387:intron 55.0%
GACCCGTCATGTGTTGAGCT+GGG - chr1.2:76551222-76551241 MS.gene34387:intron 55.0%
GGTGAACCTCAACCAAGGGA+AGG - chr1.2:76550188-76550207 MS.gene34387:CDS 55.0%
CTTGTCTGTCGCGCCTCAAC+CGG + chr1.2:76551278-76551297 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 76550116 76551779 76550116 ID=MS.gene34387
chr1.2 mRNA 76550116 76551779 76550116 ID=MS.gene34387.t1;Parent=MS.gene34387
chr1.2 exon 76551483 76551779 76551483 ID=MS.gene34387.t1.exon1;Parent=MS.gene34387.t1
chr1.2 CDS 76551483 76551779 76551483 ID=cds.MS.gene34387.t1;Parent=MS.gene34387.t1
chr1.2 exon 76550116 76550799 76550116 ID=MS.gene34387.t1.exon2;Parent=MS.gene34387.t1
chr1.2 CDS 76550116 76550799 76550116 ID=cds.MS.gene34387.t1;Parent=MS.gene34387.t1
Gene Sequence

>MS.gene34387

ATGAATATGAATCTTCATCATGGTGGGATGAAGGAGGAGTTTGTTGGAGGAAGTTCTTCCTTTTCTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACTGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCTATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTTAATACCTATGTGAGTAGTAGTATTTAATTTCAACTCTCTACTCAAGTACTGATGATATATATGTTTTTTTTTCCTTTGTTTAATCTGATGAGATAAGGCAACGTCCCTTCTCATCATAAGAGACAATATATGACATCACTAGAGAACATTTTTGTTTCATTATATGGAATAATGTAGTAATAAAGGCTATTTTTGGGAGTTAGGAATGAATGACTTTGGAAAGAAATGAATGAAGGACAATCATCTAGCTTGATTGTGTGAGTTATTTTTCTTGGTAGTACAAAATTTCCCTAATATAGAGAAAAGTCAAAATGTATTGGACGGGGATTTTAGAGAATTTCAATAAATTCTTCGAATCATTTTAATGTTTAAATTATACTCTCAAAATTAACATAGACAGACATCTATATAACAAGTTGTAGATAATATGACATCACAAGGAAACATTTTTGTTCGTCTCTAATGATTGAGAACATGTCTGGTATGTGACACGTTTCAAACACGACATTGATACATTTGGTTCTATTCAATTAATTCTATTTTATTTAAAATTATTAATGATGTTTATGTGTGAGTGTCATGTCATACCTCTATGTCTATGCCAATGTTAATTAGTGTTTGTTTTCATTGAATGGAATTATGGATTGCATTTTGATTTGAAAATGAAGGAGAAATTTGAAATTAAATTGTAGGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAACAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCATGTGTTGAGCTGGGAAGGTTTGGATTAGACGGAATCGAAGTGGACCGGTTGAGGCGCGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGACAACAACAGCAGAATACTAGAACTCATCTTGAAGCAATGGAAAGAAGGCTTAAAAGAAGTGAACAGAAACAAAAACAGATGATGAATTTCATGGCAAGGGCAATACAAAAGCCTAATTTCTTGCAACAGTTAGTTCAGCAGAAGGAATGGAGAAAAGAGTTAGAGGAAATTTTTTCTAAGAAGAGAAGGAGAACTATTGACGAAGGGCCTAGTAATGTTGATGCAGATGTTGAATTAGGATATGTTGATAAAGATTGCTTAAATTTTGTCAAACTTGAACAACATCAAGATGTTGAGGAAAACTCCAATCAAATTAATCAACTTGAAGTAAGAGATACTGAAGTGTTTTGGCAAGATTTGTTTAAGGAGGGTATTGAAGATGAAATAGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG
Protein sequence

>MS.gene34387.t1

MNMNLHHGGMKEEFVGGSSSFSVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLRGQKILLKNIRRRKTNQSQVMQALDPSCVELGRFGLDGIEVDRLRRDRQVLMVELVKLRQQQQNTRTHLEAMERRLKRSEQKQKQMMNFMARAIQKPNFLQQLVQQKEWRKELEEIFSKKRRRTIDEGPSNVDADVELGYVDKDCLNFVKLEQHQDVEENSNQINQLEVRDTEVFWQDLFKEGIEDEIDIEDVDVLAEQLGYLASSPPK