AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34439

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34439.t1 MTR_1g101810 88.427 337 25 3 1 323 1 337 0.0 554
MS.gene34439.t1 MTR_1g101810 88.427 337 25 3 1 323 31 367 0.0 553
MS.gene34439.t1 MTR_8g033070 51.661 271 101 11 61 315 76 332 5.03e-72 226
MS.gene34439.t1 MTR_2g006150 58.475 118 45 1 39 152 101 218 7.89e-38 140
MS.gene34439.t1 MTR_2g006150 58.475 118 45 1 39 152 101 218 8.43e-38 140
MS.gene34439.t1 MTR_7g028160 71.765 85 24 0 57 141 43 127 1.65e-36 133
MS.gene34439.t1 MTR_4g108370 54.264 129 48 3 14 131 36 164 3.32e-34 130
MS.gene34439.t1 MTR_5g039600 67.059 85 28 0 61 145 64 148 2.16e-33 127
MS.gene34439.t1 MTR_1g063870 82.090 67 12 0 60 126 45 111 8.64e-33 120
MS.gene34439.t1 MTR_1g038650 71.053 76 22 0 51 126 19 94 1.74e-31 118
MS.gene34439.t1 MTR_1g114380 68.750 80 25 0 57 136 26 105 3.73e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34439.t1 AT5G51910 49.533 321 108 12 1 309 1 279 2.97e-77 238
MS.gene34439.t1 AT5G51910 49.533 321 108 12 1 309 1 279 2.97e-77 238
MS.gene34439.t1 AT2G45680 50.890 281 110 8 61 314 72 351 2.35e-67 215
MS.gene34439.t1 AT1G58100 71.264 87 18 2 61 140 57 143 3.09e-34 129
MS.gene34439.t1 AT3G27010 59.322 118 33 4 10 125 35 139 1.48e-33 125
MS.gene34439.t1 AT3G27010 59.322 118 33 4 10 125 35 139 1.48e-33 125
MS.gene34439.t1 AT1G69690 77.465 71 16 0 61 131 49 119 1.80e-33 126
MS.gene34439.t1 AT1G72010 69.620 79 24 0 58 136 57 135 3.70e-33 126
MS.gene34439.t1 AT3G47620 63.918 97 20 2 36 126 92 179 1.25e-32 126
MS.gene34439.t1 AT1G35560 68.966 87 20 2 61 140 52 138 5.68e-32 122
MS.gene34439.t1 AT5G23280 65.909 88 27 1 39 126 17 101 2.01e-31 118
MS.gene34439.t1 AT5G08330 78.261 69 15 0 58 126 25 93 4.40e-31 117
MS.gene34439.t1 AT5G41030 60.256 78 31 0 52 129 56 133 7.23e-28 108
MS.gene34439.t1 AT2G37000 76.667 60 14 0 64 123 43 102 1.22e-25 101
MS.gene34439.t1 AT3G45150 60.317 63 25 0 60 122 13 75 1.79e-21 89.7
MS.gene34439.t1 AT1G58100 86.111 36 5 0 61 96 57 92 1.01e-14 74.7

Find 102 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCATTAAACTTGAATT+TGG 0.121922 1.2:-75975998 None:intergenic
TAAGAAAGAGTTGCAGTTTA+TGG 0.151782 1.2:+75976234 MS.gene34439:CDS
GGGTTGTTCTTCTGCAAATT+TGG 0.196594 1.2:+75976255 MS.gene34439:CDS
CCGTATGCGGTTTGAGCAAT+TGG 0.261841 1.2:-75975860 None:intergenic
TTTGAACCGGCATCGGAATA+AGG 0.270424 1.2:-75975466 None:intergenic
GATCAAGTTTCAATGTGTTC+TGG 0.294475 1.2:+75975830 MS.gene34439:CDS
GGCGGCGGTGGTGGTGAAAA+TGG 0.305547 1.2:+75975899 MS.gene34439:CDS
TAATGAATCAGCCACAGTTT+TGG 0.305680 1.2:+75976011 MS.gene34439:CDS
CCTCGTCAGTTGAAAGATTC+TGG 0.326356 1.2:-75975585 None:intergenic
AAGAAAGAGTTGCAGTTTAT+GGG 0.351004 1.2:+75976235 MS.gene34439:CDS
AGGGACGTGGTCGGAGAATC+AGG 0.360591 1.2:+75975543 MS.gene34439:CDS
GATTCATTAAACTTGAATTT+GGG 0.361250 1.2:-75975997 None:intergenic
CGTATGCGGTTTGAGCAATT+GGG 0.365708 1.2:-75975859 None:intergenic
GCAGAAACAAAATCAGAAAT+AGG 0.368459 1.2:-75976073 None:intergenic
CTTCAAATACTCAGATGATA+AGG 0.371896 1.2:+75976188 MS.gene34439:CDS
AACTTAAAGCTTCAATTTGA+AGG 0.378942 1.2:-75976298 None:intergenic
TTCAAATACTCAGATGATAA+GGG 0.380031 1.2:+75976189 MS.gene34439:CDS
TTCAAATGCTTCATCTACTT+TGG 0.380509 1.2:+75976117 MS.gene34439:CDS
ACCTCCGGTGGCGGCGGTGG+TGG 0.384186 1.2:+75975890 MS.gene34439:CDS
CAGAAAACATCGCCGCCGTT+AGG 0.396092 1.2:-75975341 None:intergenic
GTGGTGGTTTAGTTCCATTA+TGG 0.415083 1.2:+75975921 MS.gene34439:CDS
ACCACCTCCGGTGGCGGCGG+TGG 0.420445 1.2:+75975887 MS.gene34439:CDS
GACAACGGAGCCTGCGGCGG+CGG 0.427457 1.2:+75975406 MS.gene34439:CDS
TTACTTACAACAGGCCATAA+TGG 0.429653 1.2:-75975935 None:intergenic
TGGTCGGAGAATCAGGATTC+CGG 0.442503 1.2:+75975550 MS.gene34439:CDS
GCCATCGCTGTTTCCGTTGG+AGG 0.446395 1.2:+75975704 MS.gene34439:CDS
ACCACCGCCGCCACCGGAGG+TGG 0.448519 1.2:-75975888 None:intergenic
ATTCTGGCGGCGCATGTCGC+CGG 0.450483 1.2:-75975569 None:intergenic
AAAGTAGATGAAGCATTTGA+AGG 0.463468 1.2:-75976115 None:intergenic
GCCACTGTCATCGTTTGAAC+CGG 0.470202 1.2:-75975479 None:intergenic
ATCATCGAAGCTACCGGCAC+TGG 0.470702 1.2:+75975671 MS.gene34439:CDS
AACATCATCTCCGGCGATAC+CGG 0.473423 1.2:+75975742 MS.gene34439:CDS
CCGGCCATCGCTGTTTCCGT+TGG 0.480686 1.2:+75975701 MS.gene34439:CDS
AGAAAACATCGCCGCCGTTA+GGG 0.488008 1.2:-75975340 None:intergenic
ACCGCCGCCACCGGAGGTGG+TGG 0.490467 1.2:-75975885 None:intergenic
GGTGCCACCACCTCCGGTGG+CGG 0.492237 1.2:+75975881 MS.gene34439:CDS
CTGTTGTAAGTAACGGTGTT+GGG 0.497781 1.2:+75975945 MS.gene34439:CDS
GCATACGGTGCCACCACCTC+CGG 0.499218 1.2:+75975875 MS.gene34439:CDS
CATCTGAGTATTTGAAGAAG+TGG 0.499530 1.2:-75976182 None:intergenic
TCTTTCATTACCGCCGCCGC+AGG 0.501320 1.2:-75975416 None:intergenic
CCAACACCGTTACTTACAAC+AGG 0.501497 1.2:-75975944 None:intergenic
GCCACCACCTCCGGTGGCGG+CGG 0.501891 1.2:+75975884 MS.gene34439:CDS
GGTGTTGGGTCTAATACAAC+AGG 0.506356 1.2:+75975959 MS.gene34439:CDS
GAAAGAAGAGCTAACGGAAA+CGG 0.511043 1.2:+75975433 MS.gene34439:CDS
TTCACCACCACCGCCGCCAC+CGG 0.512971 1.2:-75975894 None:intergenic
TTTCAACTGACGAGGGAGCT+AGG 0.517084 1.2:+75975593 MS.gene34439:CDS
GTCCCTCCACCTTCGTGTGA+CGG 0.518085 1.2:-75975526 None:intergenic
CCGGTAGCTTCGATGATAGA+AGG 0.522884 1.2:-75975665 None:intergenic
ACCGGAGCATCTTCACCGTC+CGG 0.525268 1.2:-75975761 None:intergenic
CCAATTGCTCAAACCGCATA+CGG 0.529239 1.2:+75975860 MS.gene34439:CDS
CAGCTTGTTCTAGTAACCAC+CGG 0.530941 1.2:-75975640 None:intergenic
CCTTCTATCATCGAAGCTAC+CGG 0.531231 1.2:+75975665 MS.gene34439:CDS
GTCATCGTTTGAACCGGCAT+CGG 0.531689 1.2:-75975473 None:intergenic
CAATTTGAAGGATTTGAAGA+GGG 0.533413 1.2:-75976286 None:intergenic
CAACAGCCTTATTCCGATGC+CGG 0.533446 1.2:+75975460 MS.gene34439:CDS
ACCGGACGGTGAAGATGCTC+CGG 0.535114 1.2:+75975760 MS.gene34439:CDS
GGCCGGCACAGTTCCAGTGC+CGG 0.539294 1.2:-75975684 None:intergenic
GAAGCATTTGAAGGTTCTTG+TGG 0.545348 1.2:-75976106 None:intergenic
CACACGAAGGTGGAGGGACG+TGG 0.552204 1.2:+75975530 MS.gene34439:CDS
GAAGATTCCAACATCATCTC+CGG 0.553576 1.2:+75975733 MS.gene34439:CDS
AGTATCTCCGTCGGAGACAA+CGG 0.553999 1.2:+75975391 MS.gene34439:CDS
AGACCGTCACACGAAGGTGG+AGG 0.559373 1.2:+75975523 MS.gene34439:CDS
TCTTCACCGTCCGGTATCGC+CGG 0.560740 1.2:-75975752 None:intergenic
ACCACCACCGCCGCCACCGG+AGG 0.563360 1.2:-75975891 None:intergenic
CCACCGGATTGTTTCTCCGT+CGG 0.564902 1.2:-75975624 None:intergenic
TCAATTTGAAGGATTTGAAG+AGG 0.565283 1.2:-75976287 None:intergenic
CCAACGGAAACAGCGATGGC+CGG 0.568312 1.2:-75975701 None:intergenic
CCAGAATCTTTCAACTGACG+AGG 0.568890 1.2:+75975585 MS.gene34439:CDS
CCTGTTGTAAGTAACGGTGT+TGG 0.571104 1.2:+75975944 MS.gene34439:CDS
TCAAACGATGACAGTGGCGG+CGG 0.571801 1.2:+75975484 MS.gene34439:CDS
GGTATCGCCGGAGATGATGT+TGG 0.572963 1.2:-75975740 None:intergenic
GCAGGCTCCGTTGTCTCCGA+CGG 0.573037 1.2:-75975398 None:intergenic
GAAGTTGCTGAACTCAAACT+AGG 0.587727 1.2:-75976142 None:intergenic
TACCGGCACTGGAACTGTGC+CGG 0.588215 1.2:+75975682 MS.gene34439:CDS
AATCCGACGGAGAAACAATC+CGG 0.589954 1.2:+75975621 MS.gene34439:CDS
GGAGGTGGTGGCACCGTATG+CGG 0.590501 1.2:-75975873 None:intergenic
GGAGACAACGGAGCCTGCGG+CGG 0.591612 1.2:+75975403 MS.gene34439:CDS
GTCGGAGACAACGGAGCCTG+CGG 0.596750 1.2:+75975400 MS.gene34439:CDS
TTATGGCCTGTTGTAAGTAA+CGG 0.597870 1.2:+75975938 MS.gene34439:CDS
ACCTCCAACGGAAACAGCGA+TGG 0.599462 1.2:-75975705 None:intergenic
AATCTTCAACGTACCTCCAA+CGG 0.604661 1.2:-75975717 None:intergenic
TGACAGTGGCGGCGGCGAAG+AGG 0.607175 1.2:+75975492 MS.gene34439:CDS
GGTGGTGGTGAAAATGGTGG+TGG 0.608962 1.2:+75975905 MS.gene34439:CDS
GACCGTCACACGAAGGTGGA+GGG 0.613473 1.2:+75975524 MS.gene34439:CDS
TACGGTGCCACCACCTCCGG+TGG 0.613749 1.2:+75975878 MS.gene34439:CDS
CGAAGGTGGAGGGACGTGGT+CGG 0.617193 1.2:+75975534 MS.gene34439:CDS
GTATGCGGTTTGAGCAATTG+GGG 0.623066 1.2:-75975858 None:intergenic
GGCGGTGGTGGTGAAAATGG+TGG 0.629936 1.2:+75975902 MS.gene34439:CDS
GAAAGACCGTCACACGAAGG+TGG 0.637908 1.2:+75975520 MS.gene34439:CDS
CAATACTGAAGTATCTCCGT+CGG 0.638733 1.2:+75975382 MS.gene34439:CDS
AGGATGGAAGTGAACCCTAA+CGG 0.640403 1.2:+75975326 None:intergenic
CAGAATCTTTCAACTGACGA+GGG 0.645062 1.2:+75975586 MS.gene34439:CDS
TCATCTCCGGCGATACCGGA+CGG 0.649443 1.2:+75975746 MS.gene34439:CDS
GGTAATGAAAGAAGAGCTAA+CGG 0.657643 1.2:+75975427 MS.gene34439:CDS
GAGCTAGGTCACAAATCCGA+CGG 0.657749 1.2:+75975608 MS.gene34439:CDS
GGTTCAAACGATGACAGTGG+CGG 0.668294 1.2:+75975481 MS.gene34439:CDS
CGTCAGTTGAAAGATTCTGG+CGG 0.698563 1.2:-75975582 None:intergenic
GTCGAAAGACCGTCACACGA+AGG 0.707956 1.2:+75975517 MS.gene34439:CDS
GCCGGTTCAAACGATGACAG+TGG 0.712883 1.2:+75975478 MS.gene34439:CDS
GCAGGAATAGCCCAAAACTG+TGG 0.725268 1.2:-75976022 None:intergenic
CCGACGGAGAAACAATCCGG+TGG 0.744089 1.2:+75975624 MS.gene34439:CDS
ATGGAAGTGAACCCTAACGG+CGG 0.769753 1.2:+75975329 MS.gene34439:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTCATTAAACTTGAATTT+GGG - chr1.2:75976000-75976019 None:intergenic 20.0%
!! TGATTCATTAAACTTGAATT+TGG - chr1.2:75976001-75976020 None:intergenic 20.0%
! CTTGTTTGCACATTAAAAAA+TGG - chr1.2:75976052-75976071 None:intergenic 25.0%
! TTCAAATACTCAGATGATAA+GGG + chr1.2:75976189-75976208 MS.gene34439:CDS 25.0%
AAGAAAGAGTTGCAGTTTAT+GGG + chr1.2:75976235-75976254 MS.gene34439:CDS 30.0%
CAATTTGAAGGATTTGAAGA+GGG - chr1.2:75976289-75976308 None:intergenic 30.0%
CTTCAAATACTCAGATGATA+AGG + chr1.2:75976188-75976207 MS.gene34439:CDS 30.0%
GAATTTGGGAACATGAAAAA+TGG - chr1.2:75975986-75976005 None:intergenic 30.0%
GCAGAAACAAAATCAGAAAT+AGG - chr1.2:75976076-75976095 None:intergenic 30.0%
TAAGAAAGAGTTGCAGTTTA+TGG + chr1.2:75976234-75976253 MS.gene34439:CDS 30.0%
TCAATTTGAAGGATTTGAAG+AGG - chr1.2:75976290-75976309 None:intergenic 30.0%
TTCAAATGCTTCATCTACTT+TGG + chr1.2:75976117-75976136 MS.gene34439:CDS 30.0%
! AAAGTAGATGAAGCATTTGA+AGG - chr1.2:75976118-75976137 None:intergenic 30.0%
! GATGATAAGGGATTTTTCTT+TGG + chr1.2:75976201-75976220 MS.gene34439:CDS 30.0%
CATCTGAGTATTTGAAGAAG+TGG - chr1.2:75976185-75976204 None:intergenic 35.0%
GATCAAGTTTCAATGTGTTC+TGG + chr1.2:75975830-75975849 MS.gene34439:CDS 35.0%
GGTAATGAAAGAAGAGCTAA+CGG + chr1.2:75975427-75975446 MS.gene34439:CDS 35.0%
TTACTTACAACAGGCCATAA+TGG - chr1.2:75975938-75975957 None:intergenic 35.0%
TTATGGCCTGTTGTAAGTAA+CGG + chr1.2:75975938-75975957 MS.gene34439:CDS 35.0%
! AATGAATCAGCCACAGTTTT+GGG + chr1.2:75976012-75976031 MS.gene34439:CDS 35.0%
! TAATGAATCAGCCACAGTTT+TGG + chr1.2:75976011-75976030 MS.gene34439:CDS 35.0%
!! ACATTAAAAAATGGTGCTGC+AGG - chr1.2:75976043-75976062 None:intergenic 35.0%
AATCTTCAACGTACCTCCAA+CGG - chr1.2:75975720-75975739 None:intergenic 40.0%
CAGAATCTTTCAACTGACGA+GGG + chr1.2:75975586-75975605 MS.gene34439:CDS 40.0%
CTGTTGTAAGTAACGGTGTT+GGG + chr1.2:75975945-75975964 MS.gene34439:CDS 40.0%
GAAAGAAGAGCTAACGGAAA+CGG + chr1.2:75975433-75975452 MS.gene34439:CDS 40.0%
GAAGATTCCAACATCATCTC+CGG + chr1.2:75975733-75975752 MS.gene34439:CDS 40.0%
GAAGTTGCTGAACTCAAACT+AGG - chr1.2:75976145-75976164 None:intergenic 40.0%
GGGTTGTTCTTCTGCAAATT+TGG + chr1.2:75976255-75976274 MS.gene34439:CDS 40.0%
! CAATACTGAAGTATCTCCGT+CGG + chr1.2:75975382-75975401 MS.gene34439:CDS 40.0%
! GAAGCATTTGAAGGTTCTTG+TGG - chr1.2:75976109-75976128 None:intergenic 40.0%
! GCTCTTCTTCTTCTTTTCAC+CGG - chr1.2:75975782-75975801 None:intergenic 40.0%
! GTGGTGGTTTAGTTCCATTA+TGG + chr1.2:75975921-75975940 MS.gene34439:CDS 40.0%
AATCCGACGGAGAAACAATC+CGG + chr1.2:75975621-75975640 MS.gene34439:CDS 45.0%
CCAACACCGTTACTTACAAC+AGG - chr1.2:75975947-75975966 None:intergenic 45.0%
CCAATTGCTCAAACCGCATA+CGG + chr1.2:75975860-75975879 MS.gene34439:CDS 45.0%
CCAGAATCTTTCAACTGACG+AGG + chr1.2:75975585-75975604 MS.gene34439:CDS 45.0%
CCTCGTCAGTTGAAAGATTC+TGG - chr1.2:75975588-75975607 None:intergenic 45.0%
CCTGTTGTAAGTAACGGTGT+TGG + chr1.2:75975944-75975963 MS.gene34439:CDS 45.0%
CCTTCTATCATCGAAGCTAC+CGG + chr1.2:75975665-75975684 MS.gene34439:CDS 45.0%
CGTATGCGGTTTGAGCAATT+GGG - chr1.2:75975862-75975881 None:intergenic 45.0%
CGTCAGTTGAAAGATTCTGG+CGG - chr1.2:75975585-75975604 None:intergenic 45.0%
GTATGCGGTTTGAGCAATTG+GGG - chr1.2:75975861-75975880 None:intergenic 45.0%
! CAGCTTGTTCTAGTAACCAC+CGG - chr1.2:75975643-75975662 None:intergenic 45.0%
! GGTGTTGGGTCTAATACAAC+AGG + chr1.2:75975959-75975978 MS.gene34439:CDS 45.0%
! TTTGAACCGGCATCGGAATA+AGG - chr1.2:75975469-75975488 None:intergenic 45.0%
AACATCATCTCCGGCGATAC+CGG + chr1.2:75975742-75975761 MS.gene34439:CDS 50.0%
AGAAAACATCGCCGCCGTTA+GGG - chr1.2:75975343-75975362 None:intergenic 50.0%
AGTATCTCCGTCGGAGACAA+CGG + chr1.2:75975391-75975410 MS.gene34439:CDS 50.0%
ATGGAAGTGAACCCTAACGG+CGG + chr1.2:75975329-75975348 MS.gene34439:CDS 50.0%
CCGGTAGCTTCGATGATAGA+AGG - chr1.2:75975668-75975687 None:intergenic 50.0%
CCGTATGCGGTTTGAGCAAT+TGG - chr1.2:75975863-75975882 None:intergenic 50.0%
GAGCTAGGTCACAAATCCGA+CGG + chr1.2:75975608-75975627 MS.gene34439:CDS 50.0%
GCAGGAATAGCCCAAAACTG+TGG - chr1.2:75976025-75976044 None:intergenic 50.0%
GCCACTGTCATCGTTTGAAC+CGG - chr1.2:75975482-75975501 None:intergenic 50.0%
GGTTCAAACGATGACAGTGG+CGG + chr1.2:75975481-75975500 MS.gene34439:CDS 50.0%
GTCATCGTTTGAACCGGCAT+CGG - chr1.2:75975476-75975495 None:intergenic 50.0%
TGGTCGGAGAATCAGGATTC+CGG + chr1.2:75975550-75975569 MS.gene34439:CDS 50.0%
TTTCAACTGACGAGGGAGCT+AGG + chr1.2:75975593-75975612 MS.gene34439:CDS 50.0%
!! CAACAGCCTTATTCCGATGC+CGG + chr1.2:75975460-75975479 MS.gene34439:CDS 50.0%
ACCTCCAACGGAAACAGCGA+TGG - chr1.2:75975708-75975727 None:intergenic 55.0%
ATCATCGAAGCTACCGGCAC+TGG + chr1.2:75975671-75975690 MS.gene34439:CDS 55.0%
CAGAAAACATCGCCGCCGTT+AGG - chr1.2:75975344-75975363 None:intergenic 55.0%
GAAAGACCGTCACACGAAGG+TGG + chr1.2:75975520-75975539 MS.gene34439:CDS 55.0%
GGTATCGCCGGAGATGATGT+TGG - chr1.2:75975743-75975762 None:intergenic 55.0%
GTCGAAAGACCGTCACACGA+AGG + chr1.2:75975517-75975536 MS.gene34439:CDS 55.0%
TCAAACGATGACAGTGGCGG+CGG + chr1.2:75975484-75975503 MS.gene34439:CDS 55.0%
! CCACCGGATTGTTTCTCCGT+CGG - chr1.2:75975627-75975646 None:intergenic 55.0%
! GCCGGTTCAAACGATGACAG+TGG + chr1.2:75975478-75975497 MS.gene34439:CDS 55.0%
! GGTGGTGGTGAAAATGGTGG+TGG + chr1.2:75975905-75975924 MS.gene34439:CDS 55.0%
ACCGGACGGTGAAGATGCTC+CGG + chr1.2:75975760-75975779 MS.gene34439:CDS 60.0%
AGACCGTCACACGAAGGTGG+AGG + chr1.2:75975523-75975542 MS.gene34439:CDS 60.0%
AGGGACGTGGTCGGAGAATC+AGG + chr1.2:75975543-75975562 MS.gene34439:CDS 60.0%
CCAACGGAAACAGCGATGGC+CGG - chr1.2:75975704-75975723 None:intergenic 60.0%
CCGACGGAGAAACAATCCGG+TGG + chr1.2:75975624-75975643 MS.gene34439:CDS 60.0%
GACCGTCACACGAAGGTGGA+GGG + chr1.2:75975524-75975543 MS.gene34439:CDS 60.0%
GTCCCTCCACCTTCGTGTGA+CGG - chr1.2:75975529-75975548 None:intergenic 60.0%
TCATCTCCGGCGATACCGGA+CGG + chr1.2:75975746-75975765 MS.gene34439:CDS 60.0%
TCTTCACCGTCCGGTATCGC+CGG - chr1.2:75975755-75975774 None:intergenic 60.0%
TCTTTCATTACCGCCGCCGC+AGG - chr1.2:75975419-75975438 None:intergenic 60.0%
! ACCGGAGCATCTTCACCGTC+CGG - chr1.2:75975764-75975783 None:intergenic 60.0%
! GCCATCGCTGTTTCCGTTGG+AGG + chr1.2:75975704-75975723 MS.gene34439:CDS 60.0%
! GGCGGTGGTGGTGAAAATGG+TGG + chr1.2:75975902-75975921 MS.gene34439:CDS 60.0%
! TACCGGCACTGGAACTGTGC+CGG + chr1.2:75975682-75975701 MS.gene34439:CDS 60.0%
ATTCTGGCGGCGCATGTCGC+CGG - chr1.2:75975572-75975591 None:intergenic 65.0%
CACACGAAGGTGGAGGGACG+TGG + chr1.2:75975530-75975549 MS.gene34439:CDS 65.0%
CGAAGGTGGAGGGACGTGGT+CGG + chr1.2:75975534-75975553 MS.gene34439:CDS 65.0%
GCAGGCTCCGTTGTCTCCGA+CGG - chr1.2:75975401-75975420 None:intergenic 65.0%
GTCGGAGACAACGGAGCCTG+CGG + chr1.2:75975400-75975419 MS.gene34439:CDS 65.0%
! CCGGCCATCGCTGTTTCCGT+TGG + chr1.2:75975701-75975720 MS.gene34439:CDS 65.0%
! GGAGGTGGTGGCACCGTATG+CGG - chr1.2:75975876-75975895 None:intergenic 65.0%
! GGCGGCGGTGGTGGTGAAAA+TGG + chr1.2:75975899-75975918 MS.gene34439:CDS 65.0%
!! GCATACGGTGCCACCACCTC+CGG + chr1.2:75975875-75975894 MS.gene34439:CDS 65.0%
GGAGACAACGGAGCCTGCGG+CGG + chr1.2:75975403-75975422 MS.gene34439:CDS 70.0%
GGCCGGCACAGTTCCAGTGC+CGG - chr1.2:75975687-75975706 None:intergenic 70.0%
TGACAGTGGCGGCGGCGAAG+AGG + chr1.2:75975492-75975511 MS.gene34439:CDS 70.0%
TTCACCACCACCGCCGCCAC+CGG - chr1.2:75975897-75975916 None:intergenic 70.0%
!! TACGGTGCCACCACCTCCGG+TGG + chr1.2:75975878-75975897 MS.gene34439:CDS 70.0%
GACAACGGAGCCTGCGGCGG+CGG + chr1.2:75975406-75975425 MS.gene34439:CDS 75.0%
! GGTGCCACCACCTCCGGTGG+CGG + chr1.2:75975881-75975900 MS.gene34439:CDS 75.0%
! ACCACCACCGCCGCCACCGG+AGG - chr1.2:75975894-75975913 None:intergenic 80.0%
! ACCACCGCCGCCACCGGAGG+TGG - chr1.2:75975891-75975910 None:intergenic 80.0%
! ACCGCCGCCACCGGAGGTGG+TGG - chr1.2:75975888-75975907 None:intergenic 80.0%
!! ACCACCTCCGGTGGCGGCGG+TGG + chr1.2:75975887-75975906 MS.gene34439:CDS 80.0%
!! ACCTCCGGTGGCGGCGGTGG+TGG + chr1.2:75975890-75975909 MS.gene34439:CDS 80.0%
!! GCCACCACCTCCGGTGGCGG+CGG + chr1.2:75975884-75975903 MS.gene34439:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75975329 75976309 75975329 ID=MS.gene34439
chr1.2 mRNA 75975329 75976309 75975329 ID=MS.gene34439.t1;Parent=MS.gene34439
chr1.2 exon 75975329 75976309 75975329 ID=MS.gene34439.t1.exon1;Parent=MS.gene34439.t1
chr1.2 CDS 75975329 75976309 75975329 ID=cds.MS.gene34439.t1;Parent=MS.gene34439.t1
Gene Sequence

>MS.gene34439

ATGGAAGTGAACCCTAACGGCGGCGATGTTTTCTGTGAAGAAAACAACACTGACAATACTGAAGTATCTCCGTCGGAGACAACGGAGCCTGCGGCGGCGGTAATGAAAGAAGAGCTAACGGAAACGGAAAACAACAGCCTTATTCCGATGCCGGTTCAAACGATGACAGTGGCGGCGGCGAAGAGGTCGTCGAAAGACCGTCACACGAAGGTGGAGGGACGTGGTCGGAGAATCAGGATTCCGGCGACATGCGCCGCCAGAATCTTTCAACTGACGAGGGAGCTAGGTCACAAATCCGACGGAGAAACAATCCGGTGGTTACTAGAACAAGCTGAACCTTCTATCATCGAAGCTACCGGCACTGGAACTGTGCCGGCCATCGCTGTTTCCGTTGGAGGTACGTTGAAGATTCCAACATCATCTCCGGCGATACCGGACGGTGAAGATGCTCCGGTGAAAAGAAGAAGAAGAGCTTCAAACAGTGAGTTTGTTGACTTGAATGATCAAGTTTCAATGTGTTCTGGATTAGCCCCAATTGCTCAAACCGCATACGGTGCCACCACCTCCGGTGGCGGCGGTGGTGGTGAAAATGGTGGTGGTTTAGTTCCATTATGGCCTGTTGTAAGTAACGGTGTTGGGTCTAATACAACAGGACCATTTTTCATGTTCCCAAATTCAAGTTTAATGAATCAGCCACAGTTTTGGGCTATTCCTGCAGCACCATTTTTTAATGTGCAAACAAGACCTATTTCTGATTTTGTTTCTGCTATGCAAATGCCACAAGAACCTTCAAATGCTTCATCTACTTTGGCTCCTAGTTTGAGTTCAGCAACTTCAACTAGTTGTTCTGCTACCACTTCTTCAAATACTCAGATGATAAGGGATTTTTCTTTGGATATCTTTGATAAGAAAGAGTTGCAGTTTATGGGTTGTTCTTCTGCAAATTTGGAATCATCTCCCTCTTCAAATCCTTCAAATTGA
Protein sequence

>MS.gene34439.t1

MEVNPNGGDVFCEENNTDNTEVSPSETTEPAAAVMKEELTETENNSLIPMPVQTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVSVGGTLKIPTSSPAIPDGEDAPVKRRRRASNSEFVDLNDQVSMCSGLAPIAQTAYGATTSGGGGGGENGGGLVPLWPVVSNGVGSNTTGPFFMFPNSSLMNQPQFWAIPAAPFFNVQTRPISDFVSAMQMPQEPSNASSTLAPSLSSATSTSCSATTSSNTQMIRDFSLDIFDKKELQFMGCSSANLESSPSSNPSN