AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34469

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34469.t1 MTR_1g100777 92.434 304 22 1 1 304 1 303 0.0 545
MS.gene34469.t1 MTR_0020s0020 54.493 345 108 10 1 302 1 339 3.13e-104 308
MS.gene34469.t1 MTR_5g010680 47.492 299 105 7 5 252 6 303 1.80e-75 235
MS.gene34469.t1 MTR_5g089170 41.700 247 119 5 10 249 17 245 2.59e-56 182
MS.gene34469.t1 MTR_3g101870 44.444 216 90 4 10 196 16 230 1.01e-55 185
MS.gene34469.t1 MTR_5g017470 48.352 182 70 3 12 178 3 175 5.17e-51 170
MS.gene34469.t1 MTR_7g091370 39.313 262 110 5 10 270 13 226 1.44e-49 164
MS.gene34469.t1 MTR_5g029680 65.957 94 32 0 16 109 30 123 3.31e-41 149
MS.gene34469.t1 MTR_7g095680 60.638 94 37 0 16 109 47 140 5.55e-40 143
MS.gene34469.t1 MTR_4g088900 39.791 191 89 5 16 199 31 202 8.48e-39 136
MS.gene34469.t1 MTR_1g071360 61.702 94 36 0 16 109 30 123 1.68e-38 139
MS.gene34469.t1 MTR_1g071360 61.702 94 36 0 16 109 27 120 2.90e-38 139
MS.gene34469.t1 MTR_6g043060 57.143 105 42 1 17 118 21 125 6.35e-38 137
MS.gene34469.t1 MTR_1g102860 61.702 94 36 0 16 109 38 131 4.29e-37 135
MS.gene34469.t1 MTR_1g061170 41.954 174 71 3 10 182 40 184 7.07e-37 137
MS.gene34469.t1 MTR_4g077970 40.223 179 86 2 18 196 12 169 1.16e-36 137
MS.gene34469.t1 MTR_8g087540 55.000 100 45 0 14 113 8 107 2.48e-36 134
MS.gene34469.t1 MTR_2g100680 58.163 98 41 0 16 113 29 126 2.07e-35 133
MS.gene34469.t1 MTR_6g086805 56.311 103 45 0 9 111 2 104 1.06e-34 129
MS.gene34469.t1 MTR_3g104550 51.402 107 52 0 16 122 44 150 1.22e-34 129
MS.gene34469.t1 MTR_8g083100 56.842 95 41 0 19 113 23 117 3.17e-34 130
MS.gene34469.t1 MTR_2g100670 53.061 98 46 0 16 113 31 128 9.03e-33 123
MS.gene34469.t1 MTR_2g017890 47.287 129 62 3 6 133 4 127 2.25e-32 123
MS.gene34469.t1 MTR_2g100670 53.061 98 46 0 16 113 139 236 7.10e-32 122
MS.gene34469.t1 MTR_8g105780 55.914 93 40 1 18 109 22 114 2.56e-29 115
MS.gene34469.t1 MTR_4g045757 63.793 58 21 0 18 75 14 71 6.32e-21 85.1
MS.gene34469.t1 MTR_5g047190 38.462 91 49 2 26 109 1 91 4.60e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34469.t1 AT5G62020 43.689 309 132 7 12 304 17 299 6.15e-75 232
MS.gene34469.t1 AT4G11660 47.535 284 100 5 10 252 51 326 6.69e-70 221
MS.gene34469.t1 AT1G46264 47.549 204 87 3 13 196 29 232 6.62e-58 189
MS.gene34469.t1 AT4G36990 48.500 200 85 2 11 201 7 197 5.80e-54 177
MS.gene34469.t1 AT2G41690 46.111 180 97 0 16 195 38 217 7.10e-45 153
MS.gene34469.t1 AT4G17750 65.000 100 35 0 14 113 48 147 2.16e-41 150
MS.gene34469.t1 AT3G22830 62.626 99 37 0 11 109 54 152 5.89e-40 144
MS.gene34469.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.00e-39 144
MS.gene34469.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.07e-39 144
MS.gene34469.t1 AT3G02990 62.500 96 36 0 14 109 19 114 6.64e-38 140
MS.gene34469.t1 AT3G63350 54.630 108 48 1 1 108 12 118 3.89e-37 134
MS.gene34469.t1 AT5G16820 64.130 92 33 0 18 109 27 118 7.83e-37 137
MS.gene34469.t1 AT5G16820 64.130 92 33 0 18 109 27 118 7.83e-37 137
MS.gene34469.t1 AT5G43840 56.311 103 45 0 16 118 17 119 4.89e-36 131
MS.gene34469.t1 AT2G26150 56.250 96 42 0 14 109 40 135 1.24e-35 131
MS.gene34469.t1 AT2G26150 56.250 96 42 0 14 109 40 135 1.24e-35 131
MS.gene34469.t1 AT5G03720 43.030 165 65 2 18 182 55 190 1.88e-35 132
MS.gene34469.t1 AT5G03720 43.030 165 65 2 18 182 55 190 1.88e-35 132
MS.gene34469.t1 AT3G51910 50.943 106 52 0 16 121 27 132 2.42e-35 129
MS.gene34469.t1 AT5G54070 58.696 92 38 0 17 108 70 161 2.87e-34 127
MS.gene34469.t1 AT4G13980 50.000 112 53 1 19 127 24 135 1.92e-33 128
MS.gene34469.t1 AT3G24520 58.696 92 38 0 18 109 17 108 1.03e-32 123
MS.gene34469.t1 AT1G67970 43.182 132 74 1 18 148 19 150 1.36e-31 121
MS.gene34469.t1 AT4G18880 53.704 108 50 0 6 113 3 110 4.66e-31 120
MS.gene34469.t1 AT5G45710 48.780 123 61 1 6 128 3 123 8.44e-31 119
MS.gene34469.t1 AT5G45710 48.780 123 61 1 6 128 3 123 8.44e-31 119
MS.gene34469.t1 AT4G18870 41.304 92 51 1 14 102 139 230 3.76e-19 85.9
MS.gene34469.t1 AT4G18870 37.755 98 56 3 10 105 5 99 1.88e-16 78.6
MS.gene34469.t1 AT1G77570 37.500 88 50 3 19 102 27 113 5.61e-11 60.1

Find 82 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGCGTCGCCGTCAATTTC+AGG 0.165701 1.2:+75570645 MS.gene34469:CDS
TTGTTGTGCTTAAAATATTT+AGG 0.304096 1.2:-75570348 None:intergenic
TCGCTATCCCAAACAGCTTC+GGG 0.346813 1.2:-75570956 None:intergenic
ATAGAAACCCGAAGCTGTTT+GGG 0.374692 1.2:+75570949 MS.gene34469:CDS
CTGGAACAACGTTCATCGTT+TGG 0.377410 1.2:+75570295 MS.gene34469:CDS
ATCGCTATCCCAAACAGCTT+CGG 0.386863 1.2:-75570957 None:intergenic
CCACATGAACAGAATGATTC+AGG 0.388437 1.2:-75571037 None:intergenic
GATAGAAACCCGAAGCTGTT+TGG 0.391219 1.2:+75570948 MS.gene34469:CDS
GAAGACACTTCGTTTGTTAC+CGG 0.411007 1.2:+75570890 MS.gene34469:CDS
AATCAGAGCCGTTTGATTCA+AGG 0.418470 1.2:+75571066 MS.gene34469:CDS
GTGATTTCGTGGAATGATAC+TGG 0.437195 1.2:+75570276 MS.gene34469:CDS
CGAGAATGAGAGGTTGAGAA+AGG 0.441779 1.2:+75570728 MS.gene34469:CDS
TCGCCGTTGCATCGCTTCTC+CGG 0.453691 1.2:-75570909 None:intergenic
GTCAATTTCAGGGGAGGAGC+AGG 0.455410 1.2:+75570656 MS.gene34469:CDS
CCGGCATTGGAAGCTGCCGC+CGG 0.458057 1.2:-75570585 None:intergenic
TGTTACAGTCGTGCCGGCAT+TGG 0.462484 1.2:-75570598 None:intergenic
TCACCCTTCCTTGAATCAAA+CGG 0.468104 1.2:-75571074 None:intergenic
TTAGAGAATTCCCACCGATC+AGG 0.468408 1.2:-75570492 None:intergenic
TCGCGTCGCCGTCAATTTCA+GGG 0.475190 1.2:+75570646 MS.gene34469:CDS
ATCAACAAGGTGATATGTCT+TGG 0.476007 1.2:-75570235 None:intergenic
CCACCAACGATGTGATTTCG+TGG 0.481252 1.2:+75570265 MS.gene34469:CDS
AAGCAAATCCCTAGCGAAAA+CGG 0.486758 1.2:-75570325 None:intergenic
CCGGCGGCAGCTTCCAATGC+CGG 0.495670 1.2:+75570585 MS.gene34469:CDS
TTCCTCCAGCATGGCTCCGT+CGG 0.496527 1.2:+75570164 None:intergenic
GCAGTTAACAAAGGAAATAG+AGG 0.498390 1.2:+75570758 MS.gene34469:CDS
CCACGAAATCACATCGTTGG+TGG 0.498992 1.2:-75570265 None:intergenic
GAATTACATAAGTATTGAGT+TGG 0.503981 1.2:-75570389 None:intergenic
CAACGGCGAAGATGCGGCGG+TGG 0.504131 1.2:+75570923 MS.gene34469:CDS
GCGAAGGGAGCGAGAGGAGA+AGG 0.505444 1.2:+75570984 MS.gene34469:CDS
TGCTCCTCCCCTGAAATTGA+CGG 0.505469 1.2:-75570654 None:intergenic
CTCCAGCATGGCTCCGTCGG+TGG 0.505487 1.2:+75570167 None:intergenic
TTCCTCGCCGTCAATTTCTC+CGG 0.506147 1.2:+75570692 MS.gene34469:CDS
CAATCGGAAAGCGGTGCGGA+AGG 0.507695 1.2:+75570837 MS.gene34469:CDS
AACAAACGAAGTGTCTTCAC+TGG 0.512152 1.2:-75570885 None:intergenic
TGAATCTTTCCGACGAGGCG+AGG 0.528771 1.2:+75570515 MS.gene34469:CDS
ATTCAAGGAAGGGTGAAAAG+AGG 0.529327 1.2:+75571081 MS.gene34469:CDS
TGATATGTCTTGGTGAGAAA+CGG 0.529943 1.2:-75570225 None:intergenic
AGGAGAAGGACGGTGTATTG+AGG 0.542287 1.2:+75570998 MS.gene34469:CDS
AAATTACGCGAATTCTCAAT+CGG 0.544595 1.2:+75570821 MS.gene34469:CDS
TGGGATAGCGATTGATGCGA+AGG 0.546227 1.2:+75570968 MS.gene34469:CDS
GAAAATCGTTTCAGCATCGC+CGG 0.555017 1.2:+75570566 MS.gene34469:CDS
CGCTATTAGACGAGAATGAG+AGG 0.557066 1.2:+75570718 MS.gene34469:CDS
TTCTCGTCTAATAGCGCCGC+CGG 0.558116 1.2:-75570711 None:intergenic
AAAAGTTGTACCTGATCGGT+GGG 0.563579 1.2:+75570482 MS.gene34469:CDS
GAAATTGACGGCGACGCGAT+AGG 0.563683 1.2:-75570642 None:intergenic
GCGATGCAACGGCGAAGATG+CGG 0.565053 1.2:+75570917 MS.gene34469:CDS
CTCGCCGTCAATTTCTCCGG+CGG 0.565722 1.2:+75570695 MS.gene34469:CDS
AGCGCCGCCGGAGAAATTGA+CGG 0.567902 1.2:-75570699 None:intergenic
AAATCCCTAGCGAAAACGGT+AGG 0.568543 1.2:-75570321 None:intergenic
GAGCCGTTTGATTCAAGGAA+GGG 0.572438 1.2:+75571071 MS.gene34469:CDS
GCTCCGTCGGTGGAACATAA+CGG 0.578392 1.2:+75570177 MS.gene34469:CDS
GGTGAGAAACGGCGTCGGAG+TGG 0.597255 1.2:-75570214 None:intergenic
CTTTCCGACGAGGCGAGGAA+CGG 0.598393 1.2:+75570520 MS.gene34469:CDS
AGAGCCGTTTGATTCAAGGA+AGG 0.601442 1.2:+75571070 MS.gene34469:CDS
ATGCAACGGCGAAGATGCGG+CGG 0.602868 1.2:+75570920 MS.gene34469:CDS
ACAAACGAAGTGTCTTCACT+GGG 0.603590 1.2:-75570884 None:intergenic
ATTGATGCGAAGGGAGCGAG+AGG 0.606253 1.2:+75570978 MS.gene34469:CDS
AATCCCTAGCGAAAACGGTA+GGG 0.608706 1.2:-75570320 None:intergenic
ATTCCACGAAATCACATCGT+TGG 0.610773 1.2:-75570268 None:intergenic
CGCCGGAGAAATTGACGGCG+AGG 0.610959 1.2:-75570694 None:intergenic
GTCGCCGTCAATTTCAGGGG+AGG 0.611650 1.2:+75570650 MS.gene34469:CDS
TTCTCAATCGGAAAGCGGTG+CGG 0.614474 1.2:+75570833 MS.gene34469:CDS
TTACCGGAGAAGCGATGCAA+CGG 0.623684 1.2:+75570906 MS.gene34469:CDS
TTCTCTGTGATATTCAGCGA+CGG 0.625241 1.2:+75570544 MS.gene34469:CDS
CGCGTCGCCGTCAATTTCAG+GGG 0.626408 1.2:+75570647 MS.gene34469:CDS
GACGCGATAGGCTTTGCTGT+CGG 0.627107 1.2:-75570630 None:intergenic
GAAGCCGTTCCTCGCCTCGT+CGG 0.628152 1.2:-75570524 None:intergenic
GGGATAGCGATTGATGCGAA+GGG 0.631957 1.2:+75570969 MS.gene34469:CDS
GGAGAACATGCAGTTAACAA+AGG 0.636251 1.2:+75570749 MS.gene34469:CDS
CCTGAATCATTCTGTTCATG+TGG 0.637037 1.2:+75571037 MS.gene34469:CDS
TGGTGGCGATTTCATCAACA+AGG 0.649485 1.2:-75570248 None:intergenic
AGGGAGCGAGAGGAGAAGGA+CGG 0.652383 1.2:+75570988 MS.gene34469:CDS
AGGAAAAGAATGTTGCTCAA+CGG 0.662127 1.2:+75570857 MS.gene34469:CDS
AATCGTTTCAGCATCGCCGG+CGG 0.666535 1.2:+75570569 MS.gene34469:CDS
GTCTTGGTGAGAAACGGCGT+CGG 0.667306 1.2:-75570219 None:intergenic
ACGGTGTATTGAGGATGATG+TGG 0.668550 1.2:+75571007 MS.gene34469:CDS
TCGCCGTTATGTTCCACCGA+CGG 0.675908 1.2:-75570180 None:intergenic
GCGAATTCTCAATCGGAAAG+CGG 0.695773 1.2:+75570828 MS.gene34469:CDS
GTGAAAAGAGGAAAATGATG+CGG 0.699862 1.2:+75571093 MS.gene34469:CDS
TCTAATGAATCTTTCCGACG+AGG 0.711943 1.2:+75570510 MS.gene34469:CDS
CGGCACGACTGTAACAAAAG+CGG 0.729434 1.2:+75570605 MS.gene34469:CDS
CAAACGAAGTGTCTTCACTG+GGG 0.815726 1.2:-75570883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTGTGTTAATTT+TGG + chr1.2:75570441-75570460 MS.gene34469:intron 10.0%
!! TTGTTGTGCTTAAAATATTT+AGG - chr1.2:75570351-75570370 None:intergenic 20.0%
!!! GTTAATTTTGGTTATTTTCA+GGG + chr1.2:75570453-75570472 MS.gene34469:intron 20.0%
!!! TGTTAATTTTGGTTATTTTC+AGG + chr1.2:75570452-75570471 MS.gene34469:intron 20.0%
! TTAAAAAAGTTGTACCTGAT+CGG + chr1.2:75570478-75570497 MS.gene34469:CDS 25.0%
!!! GAATTACATAAGTATTGAGT+TGG - chr1.2:75570392-75570411 None:intergenic 25.0%
AAATTACGCGAATTCTCAAT+CGG + chr1.2:75570821-75570840 MS.gene34469:CDS 30.0%
AGGAAAAGAATGTTGCTCAA+CGG + chr1.2:75570857-75570876 MS.gene34469:CDS 35.0%
ATCAACAAGGTGATATGTCT+TGG - chr1.2:75570238-75570257 None:intergenic 35.0%
GCAGTTAACAAAGGAAATAG+AGG + chr1.2:75570758-75570777 MS.gene34469:CDS 35.0%
GTGAAAAGAGGAAAATGATG+CGG + chr1.2:75571093-75571112 MS.gene34469:CDS 35.0%
TGATATGTCTTGGTGAGAAA+CGG - chr1.2:75570228-75570247 None:intergenic 35.0%
AAAAAGTTGTACCTGATCGG+TGG + chr1.2:75570481-75570500 MS.gene34469:CDS 40.0%
AAAAGTTGTACCTGATCGGT+GGG + chr1.2:75570482-75570501 MS.gene34469:CDS 40.0%
AAGCAAATCCCTAGCGAAAA+CGG - chr1.2:75570328-75570347 None:intergenic 40.0%
AATCAGAGCCGTTTGATTCA+AGG + chr1.2:75571066-75571085 MS.gene34469:CDS 40.0%
ATAGAAACCCGAAGCTGTTT+GGG + chr1.2:75570949-75570968 MS.gene34469:CDS 40.0%
ATTCAAGGAAGGGTGAAAAG+AGG + chr1.2:75571081-75571100 MS.gene34469:CDS 40.0%
ATTCCACGAAATCACATCGT+TGG - chr1.2:75570271-75570290 None:intergenic 40.0%
CCACATGAACAGAATGATTC+AGG - chr1.2:75571040-75571059 None:intergenic 40.0%
CCTGAATCATTCTGTTCATG+TGG + chr1.2:75571037-75571056 MS.gene34469:CDS 40.0%
GGAGAACATGCAGTTAACAA+AGG + chr1.2:75570749-75570768 MS.gene34469:CDS 40.0%
GTGATTTCGTGGAATGATAC+TGG + chr1.2:75570276-75570295 MS.gene34469:CDS 40.0%
TCACCCTTCCTTGAATCAAA+CGG - chr1.2:75571077-75571096 None:intergenic 40.0%
TCTAATGAATCTTTCCGACG+AGG + chr1.2:75570510-75570529 MS.gene34469:CDS 40.0%
TTCTCTGTGATATTCAGCGA+CGG + chr1.2:75570544-75570563 MS.gene34469:CDS 40.0%
! AACAAACGAAGTGTCTTCAC+TGG - chr1.2:75570888-75570907 None:intergenic 40.0%
! ACAAACGAAGTGTCTTCACT+GGG - chr1.2:75570887-75570906 None:intergenic 40.0%
! GAAGACACTTCGTTTGTTAC+CGG + chr1.2:75570890-75570909 MS.gene34469:CDS 40.0%
AAATCCCTAGCGAAAACGGT+AGG - chr1.2:75570324-75570343 None:intergenic 45.0%
AATCCCTAGCGAAAACGGTA+GGG - chr1.2:75570323-75570342 None:intergenic 45.0%
ACGGTGTATTGAGGATGATG+TGG + chr1.2:75571007-75571026 MS.gene34469:CDS 45.0%
AGAGCCGTTTGATTCAAGGA+AGG + chr1.2:75571070-75571089 MS.gene34469:CDS 45.0%
ATCGCTATCCCAAACAGCTT+CGG - chr1.2:75570960-75570979 None:intergenic 45.0%
CGAGAATGAGAGGTTGAGAA+AGG + chr1.2:75570728-75570747 MS.gene34469:CDS 45.0%
CGCTATTAGACGAGAATGAG+AGG + chr1.2:75570718-75570737 MS.gene34469:CDS 45.0%
CTGGAACAACGTTCATCGTT+TGG + chr1.2:75570295-75570314 MS.gene34469:CDS 45.0%
GAAAATCGTTTCAGCATCGC+CGG + chr1.2:75570566-75570585 MS.gene34469:CDS 45.0%
GAGCCGTTTGATTCAAGGAA+GGG + chr1.2:75571071-75571090 MS.gene34469:CDS 45.0%
GATAGAAACCCGAAGCTGTT+TGG + chr1.2:75570948-75570967 MS.gene34469:CDS 45.0%
GCGAATTCTCAATCGGAAAG+CGG + chr1.2:75570828-75570847 MS.gene34469:CDS 45.0%
TTAGAGAATTCCCACCGATC+AGG - chr1.2:75570495-75570514 None:intergenic 45.0%
! CAAACGAAGTGTCTTCACTG+GGG - chr1.2:75570886-75570905 None:intergenic 45.0%
! TGGTGGCGATTTCATCAACA+AGG - chr1.2:75570251-75570270 None:intergenic 45.0%
AGGAGAAGGACGGTGTATTG+AGG + chr1.2:75570998-75571017 MS.gene34469:CDS 50.0%
CCACCAACGATGTGATTTCG+TGG + chr1.2:75570265-75570284 MS.gene34469:CDS 50.0%
CCACGAAATCACATCGTTGG+TGG - chr1.2:75570268-75570287 None:intergenic 50.0%
CGGCACGACTGTAACAAAAG+CGG + chr1.2:75570605-75570624 MS.gene34469:CDS 50.0%
GGGATAGCGATTGATGCGAA+GGG + chr1.2:75570969-75570988 MS.gene34469:CDS 50.0%
TCGCTATCCCAAACAGCTTC+GGG - chr1.2:75570959-75570978 None:intergenic 50.0%
TGCTCCTCCCCTGAAATTGA+CGG - chr1.2:75570657-75570676 None:intergenic 50.0%
TGGGATAGCGATTGATGCGA+AGG + chr1.2:75570968-75570987 MS.gene34469:CDS 50.0%
TTACCGGAGAAGCGATGCAA+CGG + chr1.2:75570906-75570925 MS.gene34469:CDS 50.0%
TTCCTCGCCGTCAATTTCTC+CGG + chr1.2:75570692-75570711 MS.gene34469:CDS 50.0%
TTCTCAATCGGAAAGCGGTG+CGG + chr1.2:75570833-75570852 MS.gene34469:CDS 50.0%
! CGCTTTTGTTACAGTCGTGC+CGG - chr1.2:75570607-75570626 None:intergenic 50.0%
! GAACCCTACCGTTTTCGCTA+GGG + chr1.2:75570317-75570336 MS.gene34469:CDS 50.0%
AATCGTTTCAGCATCGCCGG+CGG + chr1.2:75570569-75570588 MS.gene34469:CDS 55.0%
ATCGCGTCGCCGTCAATTTC+AGG + chr1.2:75570645-75570664 MS.gene34469:CDS 55.0%
ATTGATGCGAAGGGAGCGAG+AGG + chr1.2:75570978-75570997 MS.gene34469:CDS 55.0%
GAAATTGACGGCGACGCGAT+AGG - chr1.2:75570645-75570664 None:intergenic 55.0%
GCTCCGTCGGTGGAACATAA+CGG + chr1.2:75570177-75570196 MS.gene34469:CDS 55.0%
GTCAATTTCAGGGGAGGAGC+AGG + chr1.2:75570656-75570675 MS.gene34469:CDS 55.0%
GTCTTGGTGAGAAACGGCGT+CGG - chr1.2:75570222-75570241 None:intergenic 55.0%
TCGCCGTTATGTTCCACCGA+CGG - chr1.2:75570183-75570202 None:intergenic 55.0%
TCGCGTCGCCGTCAATTTCA+GGG + chr1.2:75570646-75570665 MS.gene34469:CDS 55.0%
TGAATCTTTCCGACGAGGCG+AGG + chr1.2:75570515-75570534 MS.gene34469:CDS 55.0%
TTCTCGTCTAATAGCGCCGC+CGG - chr1.2:75570714-75570733 None:intergenic 55.0%
! GACGCGATAGGCTTTGCTGT+CGG - chr1.2:75570633-75570652 None:intergenic 55.0%
! GGAACCCTACCGTTTTCGCT+AGG + chr1.2:75570316-75570335 MS.gene34469:CDS 55.0%
! TGTTACAGTCGTGCCGGCAT+TGG - chr1.2:75570601-75570620 None:intergenic 55.0%
AGCGCCGCCGGAGAAATTGA+CGG - chr1.2:75570702-75570721 None:intergenic 60.0%
AGGGAGCGAGAGGAGAAGGA+CGG + chr1.2:75570988-75571007 MS.gene34469:CDS 60.0%
ATGCAACGGCGAAGATGCGG+CGG + chr1.2:75570920-75570939 MS.gene34469:CDS 60.0%
CAATCGGAAAGCGGTGCGGA+AGG + chr1.2:75570837-75570856 MS.gene34469:CDS 60.0%
CGCGTCGCCGTCAATTTCAG+GGG + chr1.2:75570647-75570666 MS.gene34469:CDS 60.0%
CTCGCCGTCAATTTCTCCGG+CGG + chr1.2:75570695-75570714 MS.gene34469:CDS 60.0%
CTTTCCGACGAGGCGAGGAA+CGG + chr1.2:75570520-75570539 MS.gene34469:CDS 60.0%
GCGATGCAACGGCGAAGATG+CGG + chr1.2:75570917-75570936 MS.gene34469:CDS 60.0%
GTCGCCGTCAATTTCAGGGG+AGG + chr1.2:75570650-75570669 MS.gene34469:CDS 60.0%
TCGCCGTTGCATCGCTTCTC+CGG - chr1.2:75570912-75570931 None:intergenic 60.0%
CGCCGGAGAAATTGACGGCG+AGG - chr1.2:75570697-75570716 None:intergenic 65.0%
GAAGCCGTTCCTCGCCTCGT+CGG - chr1.2:75570527-75570546 None:intergenic 65.0%
GCGAAGGGAGCGAGAGGAGA+AGG + chr1.2:75570984-75571003 MS.gene34469:CDS 65.0%
! GGTGAGAAACGGCGTCGGAG+TGG - chr1.2:75570217-75570236 None:intergenic 65.0%
CAACGGCGAAGATGCGGCGG+TGG + chr1.2:75570923-75570942 MS.gene34469:CDS 70.0%
CCGGCGGCAGCTTCCAATGC+CGG + chr1.2:75570585-75570604 MS.gene34469:CDS 70.0%
! CCGGCATTGGAAGCTGCCGC+CGG - chr1.2:75570588-75570607 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75570174 75571157 75570174 ID=MS.gene34469
chr1.2 mRNA 75570174 75571157 75570174 ID=MS.gene34469.t1;Parent=MS.gene34469
chr1.2 exon 75570174 75570404 75570174 ID=MS.gene34469.t1.exon1;Parent=MS.gene34469.t1
chr1.2 CDS 75570174 75570404 75570174 ID=cds.MS.gene34469.t1;Parent=MS.gene34469.t1
chr1.2 exon 75570474 75571157 75570474 ID=MS.gene34469.t1.exon2;Parent=MS.gene34469.t1
chr1.2 CDS 75570474 75571157 75570474 ID=cds.MS.gene34469.t1;Parent=MS.gene34469.t1
Gene Sequence

>MS.gene34469

ATGGCTCCGTCGGTGGAACATAACGGCGAGTGTCAAAGATCCACTCCGACGCCGTTTCTCACCAAGACATATCACCTTGTTGATGAAATCGCCACCAACGATGTGATTTCGTGGAATGATACTGGAACAACGTTCATCGTTTGGAACCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGTAATTCACTCATCATCATCGAAGCTATTTGATTTATTTTTTATTTGTGTTAATTTTGGTTATTTTCAGGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAATGAATCTTTCCGACGAGGCGAGGAACGGCTTCTCTGTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGCGGCAGCTTCCAATGCCGGCACGACTGTAACAAAAGCGGTTCCGACAGCAAAGCCTATCGCGTCGCCGTCAATTTCAGGGGAGGAGCAGGTGATTTCTTCGAATTCCTCGCCGTCAATTTCTCCGGCGGCGCTATTAGACGAGAATGAGAGGTTGAGAAAGGAGAACATGCAGTTAACAAAGGAAATAGAGGACATGAAATCGCTCTACAACAATATATTCAATCTTCTGTCAAATTACGCGAATTCTCAATCGGAAAGCGGTGCGGAAGGAAAAGAATGTTGCTCAACGGCGTCCCCAGTGAAGACACTTCGTTTGTTACCGGAGAAGCGATGCAACGGCGAAGATGCGGCGGTGGAAGATAGAAACCCGAAGCTGTTTGGGATAGCGATTGATGCGAAGGGAGCGAGAGGAGAAGGACGGTGTATTGAGGATGATGTGGTGTTGAGCCTGAATCATTCTGTTCATGTGGACGTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGATGCGGTTAAATCAGTGCTATAGAGCGAATCAGAGTGTGTGCAATTGA
Protein sequence

>MS.gene34469.t1

MAPSVEHNGECQRSTPTPFLTKTYHLVDEIATNDVISWNDTGTTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLLCDIQRRKIVSASPAAASNAGTTVTKAVPTAKPIASPSISGEEQVISSNSSPSISPAALLDENERLRKENMQLTKEIEDMKSLYNNIFNLLSNYANSQSESGAEGKECCSTASPVKTLRLLPEKRCNGEDAAVEDRNPKLFGIAIDAKGARGEGRCIEDDVVLSLNHSVHVDVKSEPFDSRKGEKRKMMRLNQCYRANQSVCN