AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34480.t1 MTR_1g100667 96.691 272 7 1 1 270 1 272 0.0 551
MS.gene34480.t1 MTR_6g055910 60.204 294 82 5 1 270 1 283 1.02e-116 336
MS.gene34480.t1 MTR_6g055910 56.574 251 75 4 43 270 15 254 1.19e-88 264
MS.gene34480.t1 MTR_6g055910 52.915 223 71 4 71 270 2 213 2.04e-68 211
MS.gene34480.t1 MTR_1g085040 70.248 121 35 1 10 129 9 129 8.78e-55 181
MS.gene34480.t1 MTR_1g112760 68.908 119 36 1 10 127 10 128 5.44e-53 172
MS.gene34480.t1 MTR_7g110830 56.863 153 65 1 10 161 9 161 7.30e-53 176
MS.gene34480.t1 MTR_3g077110 68.595 121 37 1 10 129 9 129 7.81e-53 175
MS.gene34480.t1 MTR_4g105130 60.284 141 52 2 10 146 9 149 1.44e-52 175
MS.gene34480.t1 MTR_1g085640 68.908 119 36 1 10 127 9 127 4.15e-52 174
MS.gene34480.t1 MTR_7g111290 63.768 138 44 2 10 146 9 141 2.02e-51 172
MS.gene34480.t1 MTR_4g065017 55.629 151 50 1 9 159 13 146 2.13e-51 171
MS.gene34480.t1 MTR_8g098860 65.741 108 37 0 12 119 11 118 1.40e-50 169
MS.gene34480.t1 MTR_2g099740 69.444 108 33 0 10 117 9 116 4.70e-50 169
MS.gene34480.t1 MTR_8g017440 68.807 109 34 0 10 118 9 117 4.70e-50 168
MS.gene34480.t1 MTR_2g097910 70.192 104 31 0 14 117 21 124 4.71e-50 167
MS.gene34480.t1 MTR_2g064160 50.296 169 79 3 9 172 7 175 4.95e-50 167
MS.gene34480.t1 MTR_8g017540 68.519 108 34 0 10 117 55 162 3.32e-49 167
MS.gene34480.t1 MTR_8g017500 66.667 108 36 0 10 117 9 116 1.42e-48 164
MS.gene34480.t1 MTR_3g028740 69.444 108 33 0 10 117 19 126 2.01e-48 164
MS.gene34480.t1 MTR_1g100653 63.889 108 39 0 14 121 13 120 2.67e-48 162
MS.gene34480.t1 MTR_6g012690 67.925 106 34 0 14 119 13 118 5.14e-48 163
MS.gene34480.t1 MTR_3g097450 47.799 159 78 3 1 155 1 158 8.96e-48 160
MS.gene34480.t1 MTR_5g010020 67.327 101 33 0 12 112 11 111 1.03e-47 162
MS.gene34480.t1 MTR_7g011170 63.025 119 43 1 1 119 1 118 5.58e-47 159
MS.gene34480.t1 MTR_7g115650 60.169 118 47 0 14 131 13 130 6.05e-47 156
MS.gene34480.t1 MTR_8g095390 58.974 117 47 1 15 130 14 130 1.34e-46 158
MS.gene34480.t1 MTR_2g011660 59.664 119 48 0 1 119 1 119 1.39e-46 159
MS.gene34480.t1 MTR_3g074520 65.094 106 37 0 14 119 13 118 1.67e-46 159
MS.gene34480.t1 MTR_4g073420 36.923 260 145 7 1 246 1 255 5.18e-46 156
MS.gene34480.t1 MTR_4g082230 56.115 139 59 2 1 138 1 138 5.62e-46 159
MS.gene34480.t1 MTR_4g082290 59.524 126 50 1 14 138 13 138 6.86e-46 159
MS.gene34480.t1 MTR_4g478180 52.083 144 62 2 14 156 14 151 7.81e-46 157
MS.gene34480.t1 MTR_4g091490 58.824 119 49 0 1 119 1 119 1.94e-45 156
MS.gene34480.t1 MTR_5g029840 60.000 115 45 1 14 127 13 127 5.05e-45 154
MS.gene34480.t1 MTR_8g017390 61.157 121 46 1 10 129 9 129 8.16e-45 157
MS.gene34480.t1 MTR_1g043080 38.739 222 118 5 14 219 13 232 1.70e-44 151
MS.gene34480.t1 MTR_1g076150 64.423 104 37 0 14 117 13 116 2.10e-44 151
MS.gene34480.t1 MTR_5g079670 53.543 127 53 2 15 136 13 138 3.21e-44 149
MS.gene34480.t1 MTR_5g007370 62.264 106 40 0 14 119 13 118 4.31e-44 151
MS.gene34480.t1 MTR_8g017340 63.636 110 39 1 9 117 8 117 1.54e-43 154
MS.gene34480.t1 MTR_5g078140 51.773 141 66 2 1 140 1 140 1.67e-43 150
MS.gene34480.t1 MTR_8g017350 63.636 110 39 1 9 117 8 117 5.13e-43 155
MS.gene34480.t1 MTR_2g089620 58.333 120 49 1 1 120 1 119 6.53e-43 149
MS.gene34480.t1 MTR_2g089450 60.377 106 42 0 14 119 13 118 1.14e-42 146
MS.gene34480.t1 MTR_4g485530 56.034 116 51 0 4 119 3 118 1.47e-42 144
MS.gene34480.t1 MTR_3g065440 54.135 133 59 2 1 132 1 132 2.82e-42 147
MS.gene34480.t1 MTR_4g121460 45.977 174 91 2 1 172 1 173 3.24e-42 147
MS.gene34480.t1 MTR_0251s0050 56.410 117 51 0 1 117 1 117 4.89e-42 145
MS.gene34480.t1 MTR_0063s0090 63.366 101 37 0 14 114 13 113 7.61e-42 143
MS.gene34480.t1 MTR_1g043050 57.522 113 48 0 14 126 13 125 8.36e-42 144
MS.gene34480.t1 MTR_7g010210 39.738 229 99 7 14 205 13 239 8.52e-42 146
MS.gene34480.t1 MTR_7g010210 57.944 107 45 0 14 120 13 119 4.35e-41 142
MS.gene34480.t1 MTR_3g461490 49.635 137 68 1 14 149 13 149 4.50e-41 144
MS.gene34480.t1 MTR_8g031360 51.938 129 60 2 1 127 1 129 7.93e-41 143
MS.gene34480.t1 MTR_4g102380 55.462 119 52 1 1 119 1 118 1.01e-40 142
MS.gene34480.t1 MTR_7g035075 42.945 163 86 2 11 168 12 172 1.01e-40 140
MS.gene34480.t1 MTR_0008s0390 54.701 117 53 0 1 117 1 117 1.14e-40 142
MS.gene34480.t1 MTR_7g096930 56.410 117 50 1 1 117 1 116 1.24e-40 142
MS.gene34480.t1 MTR_6g009430 52.713 129 57 3 1 127 1 127 1.93e-40 143
MS.gene34480.t1 MTR_0008s0470 59.615 104 42 0 14 117 14 117 2.21e-40 141
MS.gene34480.t1 MTR_2g034790 50.327 153 68 4 1 147 1 151 4.43e-40 142
MS.gene34480.t1 MTR_1g017000 43.590 156 79 4 1 155 1 148 5.19e-40 139
MS.gene34480.t1 MTR_2g067420 61.165 103 40 0 10 112 11 113 8.15e-40 141
MS.gene34480.t1 MTR_7g076740 55.932 118 50 2 1 117 1 117 8.44e-40 140
MS.gene34480.t1 MTR_2g089420 45.399 163 77 2 14 168 12 170 1.10e-39 143
MS.gene34480.t1 MTR_1g073170 56.522 115 48 1 2 116 11 123 1.25e-39 139
MS.gene34480.t1 MTR_1g045610 60.577 104 41 0 14 117 22 125 1.29e-39 138
MS.gene34480.t1 MTR_7g102110 48.993 149 70 4 1 145 1 147 2.59e-39 138
MS.gene34480.t1 MTR_3g083540 52.991 117 54 1 14 129 42 158 2.76e-39 139
MS.gene34480.t1 MTR_0008s0280 60.784 102 40 0 14 115 13 114 3.60e-39 136
MS.gene34480.t1 MTR_1g017140 36.564 227 134 6 1 225 1 219 4.69e-39 139
MS.gene34480.t1 MTR_3g039990 52.941 119 56 0 1 119 1 119 5.03e-39 138
MS.gene34480.t1 MTR_5g042030 54.783 115 51 1 14 127 8 122 8.51e-39 137
MS.gene34480.t1 MTR_4g125520 54.701 117 52 1 1 117 1 116 9.33e-39 137
MS.gene34480.t1 MTR_7g087130 43.373 166 87 1 14 172 13 178 1.14e-38 138
MS.gene34480.t1 MTR_1g110460 55.357 112 49 1 14 125 27 137 1.29e-38 137
MS.gene34480.t1 MTR_6g006030 53.636 110 51 0 11 120 12 121 2.37e-38 134
MS.gene34480.t1 MTR_0140s0030 56.604 106 46 0 14 119 14 119 2.93e-38 137
MS.gene34480.t1 MTR_0489s0020 56.604 106 46 0 14 119 14 119 2.93e-38 137
MS.gene34480.t1 MTR_4g100720 44.654 159 82 2 9 161 9 167 3.05e-38 132
MS.gene34480.t1 MTR_1g086510 54.701 117 53 0 14 130 22 138 3.32e-38 135
MS.gene34480.t1 MTR_8g027345 52.941 119 55 1 1 119 1 118 3.54e-38 136
MS.gene34480.t1 MTR_8g020490 58.095 105 44 0 15 119 10 114 3.54e-38 134
MS.gene34480.t1 MTR_4g057635 55.118 127 52 4 1 125 1 124 3.69e-38 136
MS.gene34480.t1 MTR_5g014990 43.125 160 73 3 1 143 1 159 4.98e-38 135
MS.gene34480.t1 MTR_2g095520 52.555 137 63 2 1 136 1 136 4.99e-38 136
MS.gene34480.t1 MTR_6g012180 58.586 99 41 0 14 112 13 111 8.63e-38 135
MS.gene34480.t1 MTR_7g117730 50.000 124 61 1 1 124 1 123 1.32e-37 133
MS.gene34480.t1 MTR_6g090405 45.946 148 77 3 1 146 1 147 3.26e-37 132
MS.gene34480.t1 MTR_3g103570 53.390 118 53 2 1 117 1 117 5.28e-37 134
MS.gene34480.t1 MTR_0197s0010 41.290 155 87 1 18 168 6 160 5.82e-37 130
MS.gene34480.t1 MTR_1g086530 52.174 115 54 1 14 128 34 147 8.55e-37 132
MS.gene34480.t1 MTR_1g062940 56.731 104 45 0 14 117 7 110 3.38e-36 128
MS.gene34480.t1 MTR_3g052450 44.295 149 75 1 14 162 41 181 1.44e-35 133
MS.gene34480.t1 MTR_8g042410 39.024 205 104 5 14 210 38 229 1.57e-35 133
MS.gene34480.t1 MTR_0247s0040 56.436 101 44 0 14 114 8 108 2.16e-35 125
MS.gene34480.t1 MTR_5g078800 54.464 112 50 1 6 117 1 111 2.19e-35 127
MS.gene34480.t1 MTR_0193s0090 49.565 115 58 0 14 128 8 122 6.89e-35 125
MS.gene34480.t1 MTR_4g097570 54.955 111 48 2 1 110 1 110 7.24e-35 127
MS.gene34480.t1 MTR_0001s0360 55.238 105 47 0 14 118 8 112 9.33e-35 125
MS.gene34480.t1 MTR_3g052430 51.786 112 54 0 14 125 42 153 9.57e-35 131
MS.gene34480.t1 MTR_4g063100 51.887 106 51 0 14 119 8 113 1.26e-34 125
MS.gene34480.t1 MTR_5g078910 52.212 113 53 1 6 118 1 112 1.71e-34 126
MS.gene34480.t1 MTR_5g079290 53.333 105 49 0 14 118 18 122 1.84e-34 125
MS.gene34480.t1 MTR_5g079220 51.754 114 54 1 6 118 13 126 2.14e-34 125
MS.gene34480.t1 MTR_3g011610 50.909 110 54 0 14 123 38 147 2.58e-34 130
MS.gene34480.t1 MTR_7g017260 50.420 119 57 1 14 130 26 144 7.92e-34 124
MS.gene34480.t1 MTR_2g033170 51.261 119 58 0 14 132 25 143 9.89e-34 125
MS.gene34480.t1 MTR_5g078860 54.808 104 47 0 14 117 8 111 1.05e-33 124
MS.gene34480.t1 MTR_2g096380 51.923 104 50 0 14 117 7 110 1.72e-33 122
MS.gene34480.t1 MTR_7g109320 55.556 117 51 1 1 117 1 116 1.93e-33 125
MS.gene34480.t1 MTR_4g097570 54.464 112 48 3 1 110 1 111 2.63e-33 123
MS.gene34480.t1 MTR_4g128670 51.786 112 52 2 1 111 1 111 3.84e-33 124
MS.gene34480.t1 MTR_8g060940 55.000 100 45 0 14 113 8 107 4.35e-33 121
MS.gene34480.t1 MTR_4g123040 51.695 118 55 2 14 130 25 141 9.33e-33 122
MS.gene34480.t1 MTR_5g079120 50.000 104 52 0 14 117 62 165 1.21e-32 121
MS.gene34480.t1 MTR_1g021230 53.398 103 48 0 14 116 58 160 2.64e-32 123
MS.gene34480.t1 MTR_8g006470 52.294 109 50 2 14 121 11 118 2.88e-32 120
MS.gene34480.t1 MTR_2g088170 52.727 110 52 0 14 123 30 139 8.18e-32 122
MS.gene34480.t1 MTR_5g078950 52.475 101 48 0 14 114 8 108 8.80e-32 118
MS.gene34480.t1 MTR_5g078930 51.818 110 52 1 14 122 10 119 1.14e-31 117
MS.gene34480.t1 MTR_1g083630 49.107 112 57 0 12 123 11 122 2.09e-31 122
MS.gene34480.t1 MTR_4g029540 52.427 103 48 1 14 115 11 113 6.82e-30 114
MS.gene34480.t1 MTR_7g111290 57.282 103 38 2 45 146 2 99 1.99e-29 114
MS.gene34480.t1 MTR_5g062790 35.632 174 92 4 14 185 10 165 9.30e-29 111
MS.gene34480.t1 MTR_5g088610 50.485 103 50 1 14 115 10 112 9.85e-29 112
MS.gene34480.t1 MTR_3g045430 43.590 117 65 1 14 129 14 130 9.90e-29 111
MS.gene34480.t1 MTR_5g016510 48.598 107 54 1 15 121 5 110 1.07e-28 111
MS.gene34480.t1 MTR_4g063100 61.644 73 28 0 47 119 12 84 5.64e-28 107
MS.gene34480.t1 MTR_4g019370 46.018 113 60 1 15 127 38 149 1.26e-27 109
MS.gene34480.t1 MTR_5g088080 47.573 103 53 1 14 115 13 115 2.26e-27 107
MS.gene34480.t1 MTR_5g088150 47.573 103 53 1 14 115 13 115 2.26e-27 107
MS.gene34480.t1 MTR_5g488210 47.573 103 53 1 14 115 13 115 2.26e-27 107
MS.gene34480.t1 MTR_5g088640 47.573 103 53 1 14 115 13 115 3.00e-27 106
MS.gene34480.t1 MTR_3g101290 50.000 106 48 2 15 118 37 139 3.35e-27 105
MS.gene34480.t1 MTR_6g027340 48.624 109 51 3 9 116 12 116 3.49e-27 104
MS.gene34480.t1 MTR_2g096380 61.972 71 27 0 47 117 21 91 3.72e-27 105
MS.gene34480.t1 MTR_5g488170 47.573 103 53 1 14 115 13 115 4.71e-27 105
MS.gene34480.t1 MTR_6g015455 40.260 154 90 2 15 167 5 157 5.19e-27 110
MS.gene34480.t1 MTR_6g074860 46.078 102 52 2 15 115 4 103 1.70e-26 103
MS.gene34480.t1 MTR_5g007300 61.842 76 29 0 14 89 65 140 2.49e-26 100
MS.gene34480.t1 MTR_3g089045 34.973 183 108 4 15 189 16 195 2.53e-26 104
MS.gene34480.t1 MTR_6g027360 48.113 106 52 2 12 116 75 178 3.28e-26 104
MS.gene34480.t1 MTR_4g094982 47.115 104 54 1 15 118 5 107 6.41e-26 103
MS.gene34480.t1 MTR_4g082040 44.118 102 56 1 15 116 105 205 7.96e-25 102
MS.gene34480.t1 MTR_5g041570 36.301 146 78 3 12 143 131 275 1.33e-24 102
MS.gene34480.t1 MTR_5g049190 43.810 105 58 1 15 119 19 122 1.69e-24 98.6
MS.gene34480.t1 MTR_7g061330 44.860 107 58 1 11 117 109 214 1.65e-23 99.8
MS.gene34480.t1 MTR_7g061330 33.607 122 68 4 9 119 46 165 1.68e-11 64.3
MS.gene34480.t1 MTR_7g461410 44.860 107 58 1 11 117 109 214 1.65e-23 99.8
MS.gene34480.t1 MTR_7g461410 33.607 122 68 4 9 119 46 165 1.68e-11 64.3
MS.gene34480.t1 MTR_7g061330 44.860 107 58 1 11 117 73 178 2.96e-23 99.0
MS.gene34480.t1 MTR_7g061330 35.088 114 69 4 9 119 18 129 4.64e-11 63.2
MS.gene34480.t1 MTR_3g463400 40.952 105 61 1 15 119 133 236 3.06e-23 98.6
MS.gene34480.t1 MTR_6g027370 40.351 114 67 1 15 128 99 211 9.49e-23 95.9
MS.gene34480.t1 MTR_5g070020 35.246 122 78 1 15 136 122 242 1.56e-22 95.5
MS.gene34480.t1 MTR_7g086960 45.098 102 55 1 15 116 89 189 2.58e-22 95.1
MS.gene34480.t1 MTR_4g128190 39.259 135 62 4 14 142 12 132 3.52e-22 92.4
MS.gene34480.t1 MTR_4g105660 40.000 105 62 1 15 119 180 283 1.49e-21 93.6
MS.gene34480.t1 MTR_3g110028 37.500 120 74 1 11 130 81 199 1.50e-21 94.4
MS.gene34480.t1 MTR_3g110028 38.596 114 66 3 9 119 25 137 3.59e-16 78.6
MS.gene34480.t1 MTR_1g085880 48.624 109 54 2 9 115 7 115 2.21e-21 89.4
MS.gene34480.t1 MTR_1g026870 37.705 122 75 1 11 132 81 201 4.46e-21 93.2
MS.gene34480.t1 MTR_1g026870 35.965 114 69 3 9 119 25 137 6.17e-15 75.1
MS.gene34480.t1 MTR_1g057980 41.509 106 61 1 6 111 71 175 5.54e-21 90.5
MS.gene34480.t1 MTR_7g037260 32.680 153 81 3 15 151 145 291 6.48e-21 90.9
MS.gene34480.t1 MTR_3g077650 40.708 113 64 2 8 119 174 284 8.33e-21 91.7
MS.gene34480.t1 MTR_1g085770 48.624 109 54 2 9 115 7 115 1.25e-20 89.7
MS.gene34480.t1 MTR_5g082910 44.444 99 54 1 15 113 19 116 2.31e-20 88.6
MS.gene34480.t1 MTR_7g451170 35.965 114 72 1 6 119 182 294 1.52e-19 87.8
MS.gene34480.t1 MTR_7g035350 42.268 97 55 1 15 111 225 320 1.90e-19 87.8
MS.gene34480.t1 MTR_7g061550 38.000 100 60 1 18 115 10 109 7.14e-19 85.5
MS.gene34480.t1 MTR_5g010650 43.011 93 52 1 18 110 113 204 3.49e-18 84.0
MS.gene34480.t1 MTR_4g088015 36.697 109 68 1 11 119 217 324 8.10e-18 82.8
MS.gene34480.t1 MTR_0023s0210 47.368 76 40 0 14 89 8 83 3.46e-17 74.7
MS.gene34480.t1 MTR_8g468380 32.000 125 84 1 18 142 25 148 6.10e-17 80.5
MS.gene34480.t1 MTR_7g450950 36.082 97 61 1 15 111 157 252 7.69e-17 79.3
MS.gene34480.t1 MTR_5g038910 34.109 129 82 3 7 134 17 143 3.55e-16 78.2
MS.gene34480.t1 MTR_5g038910 34.109 129 82 3 7 134 17 143 4.78e-16 77.4
MS.gene34480.t1 MTR_7g037130 36.792 106 64 2 15 120 145 247 8.19e-16 76.6
MS.gene34480.t1 MTR_8g017480 65.909 44 15 0 10 53 9 52 1.60e-12 61.2
MS.gene34480.t1 MTR_4g063100 53.061 49 23 0 71 119 1 49 1.84e-12 64.7
MS.gene34480.t1 MTR_2g096380 55.814 43 19 0 75 117 5 47 9.11e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34480.t1 AT4G25560 51.675 209 80 3 6 193 1 209 1.72e-61 196
MS.gene34480.t1 AT5G52260 56.915 188 65 4 7 178 6 193 5.24e-61 194
MS.gene34480.t1 AT3G48920 53.368 193 81 4 8 196 13 200 7.23e-61 193
MS.gene34480.t1 AT5G26660 69.748 119 35 1 10 127 9 127 1.79e-53 177
MS.gene34480.t1 AT1G57560 49.738 191 79 4 10 195 9 187 2.73e-53 176
MS.gene34480.t1 AT1G57560 58.389 149 57 2 10 157 9 153 6.88e-53 173
MS.gene34480.t1 AT4G01680 63.566 129 46 1 10 137 9 137 7.31e-53 172
MS.gene34480.t1 AT4G01680 63.566 129 46 1 10 137 9 137 4.56e-52 173
MS.gene34480.t1 AT1G09540 63.566 129 46 1 10 137 9 137 2.91e-51 172
MS.gene34480.t1 AT1G63910 66.667 108 36 0 12 119 11 118 1.21e-50 170
MS.gene34480.t1 AT3G13890 69.444 108 33 0 10 117 9 116 1.98e-50 169
MS.gene34480.t1 AT5G12870 68.519 108 34 0 12 119 17 124 2.72e-49 164
MS.gene34480.t1 AT3G08500 69.444 108 33 0 10 117 27 134 6.43e-49 165
MS.gene34480.t1 AT3G01140 55.629 151 64 3 1 149 1 150 6.68e-49 165
MS.gene34480.t1 AT3G12720 61.207 116 44 1 12 126 21 136 9.61e-49 164
MS.gene34480.t1 AT4G01680 58.156 141 46 2 10 137 9 149 1.38e-48 164
MS.gene34480.t1 AT3G01140 57.971 138 56 2 14 149 56 193 1.79e-48 165
MS.gene34480.t1 AT5G65230 68.868 106 33 0 14 119 13 118 3.44e-48 162
MS.gene34480.t1 AT5G15310 67.925 106 34 0 14 119 13 118 1.44e-47 161
MS.gene34480.t1 AT5G15310 67.925 106 34 0 14 119 13 118 1.65e-47 159
MS.gene34480.t1 AT5G15310 67.925 106 34 0 14 119 13 118 1.79e-47 160
MS.gene34480.t1 AT1G34670 52.941 153 60 3 14 165 13 154 1.90e-47 162
MS.gene34480.t1 AT4G05100 60.504 119 47 0 1 119 1 119 1.92e-47 160
MS.gene34480.t1 AT4G34990 51.299 154 67 3 1 153 1 147 2.64e-47 159
MS.gene34480.t1 AT3G13890 64.103 117 33 1 10 117 9 125 2.91e-47 161
MS.gene34480.t1 AT4G38620 53.237 139 63 2 1 138 1 138 4.50e-47 159
MS.gene34480.t1 AT3G02940 63.208 106 39 0 14 119 13 118 1.10e-46 158
MS.gene34480.t1 AT3G02940 63.208 106 39 0 14 119 13 118 1.81e-46 158
MS.gene34480.t1 AT3G02940 63.208 106 39 0 14 119 13 118 1.81e-46 158
MS.gene34480.t1 AT1G18570 51.471 136 65 1 5 139 5 140 3.97e-46 158
MS.gene34480.t1 AT5G54230 65.094 106 37 0 14 119 13 118 4.01e-46 157
MS.gene34480.t1 AT1G79180 64.865 111 39 0 10 120 11 121 4.66e-46 156
MS.gene34480.t1 AT5G10280 58.824 119 48 1 1 119 1 118 4.87e-46 157
MS.gene34480.t1 AT1G22640 52.143 140 65 2 1 139 1 139 5.16e-46 155
MS.gene34480.t1 AT4G09460 51.825 137 64 2 1 136 1 136 1.43e-45 153
MS.gene34480.t1 AT1G74430 64.151 106 38 0 14 119 13 118 1.10e-44 152
MS.gene34480.t1 AT4G21440 62.264 106 40 0 14 119 13 118 1.17e-44 154
MS.gene34480.t1 AT2G16720 53.676 136 61 2 1 135 1 135 1.21e-44 152
MS.gene34480.t1 AT3G23250 60.577 104 41 0 14 117 13 116 2.56e-44 151
MS.gene34480.t1 AT5G16770 62.500 104 39 0 14 117 13 116 2.84e-44 152
MS.gene34480.t1 AT5G16770 62.500 104 39 0 14 117 13 116 2.84e-44 152
MS.gene34480.t1 AT2G31180 58.678 121 49 1 1 121 1 120 3.46e-44 150
MS.gene34480.t1 AT3G12820 62.727 110 41 0 10 119 11 120 4.30e-44 149
MS.gene34480.t1 AT1G06180 53.333 135 62 1 1 135 1 134 4.74e-44 150
MS.gene34480.t1 AT5G16770 62.500 104 39 0 14 117 13 116 4.85e-44 152
MS.gene34480.t1 AT5G16770 62.500 104 39 0 14 117 13 116 4.85e-44 152
MS.gene34480.t1 AT5G16600 45.665 173 92 2 1 172 1 172 5.07e-44 152
MS.gene34480.t1 AT4G17785 58.974 117 48 0 1 117 1 117 7.90e-44 152
MS.gene34480.t1 AT4G17785 58.974 117 48 0 1 117 1 117 9.98e-44 152
MS.gene34480.t1 AT5G60890 58.261 115 47 1 14 127 13 127 1.92e-43 149
MS.gene34480.t1 AT4G12350 48.993 149 72 3 1 147 1 147 2.11e-43 149
MS.gene34480.t1 AT4G22680 48.101 158 80 2 1 157 1 157 2.15e-43 149
MS.gene34480.t1 AT4G28110 59.813 107 43 0 14 120 13 119 2.21e-43 149
MS.gene34480.t1 AT5G07690 57.025 121 51 1 14 133 13 133 2.89e-43 150
MS.gene34480.t1 AT5G61420 56.250 128 53 2 14 140 13 138 3.45e-43 150
MS.gene34480.t1 AT5G07700 48.734 158 75 4 14 169 13 166 1.13e-42 149
MS.gene34480.t1 AT5G07700 48.734 158 75 4 14 169 13 166 1.13e-42 149
MS.gene34480.t1 AT1G16490 62.385 109 41 0 10 118 11 119 1.19e-42 147
MS.gene34480.t1 AT3G30210 47.514 181 73 3 14 194 28 186 4.53e-42 145
MS.gene34480.t1 AT5G35550 61.321 106 41 0 15 120 16 121 9.12e-42 144
MS.gene34480.t1 AT1G56160 62.385 109 41 0 10 118 11 119 1.11e-41 145
MS.gene34480.t1 AT1G66230 57.143 119 50 1 1 119 1 118 1.19e-41 144
MS.gene34480.t1 AT1G74080 47.619 147 75 2 14 158 13 159 1.92e-41 145
MS.gene34480.t1 AT1G35515 49.635 137 67 2 1 136 1 136 4.43e-41 141
MS.gene34480.t1 AT5G23000 57.983 119 46 3 1 117 1 117 4.80e-41 144
MS.gene34480.t1 AT5G56110 49.635 137 68 1 14 149 13 149 5.66e-41 144
MS.gene34480.t1 AT3G01530 50.000 132 65 1 14 144 26 157 7.76e-41 140
MS.gene34480.t1 AT5G14340 50.000 138 67 2 1 137 13 149 2.86e-40 140
MS.gene34480.t1 AT5G40350 48.507 134 64 1 14 142 18 151 3.03e-40 139
MS.gene34480.t1 AT3G27920 51.786 112 54 0 7 118 8 119 3.09e-40 139
MS.gene34480.t1 AT5G49330 57.265 117 49 1 1 117 1 116 3.23e-40 142
MS.gene34480.t1 AT5G62470 57.798 109 46 0 14 122 13 121 3.95e-40 142
MS.gene34480.t1 AT3G61250 58.654 104 43 0 14 117 13 116 4.03e-40 141
MS.gene34480.t1 AT1G08810 52.344 128 61 0 14 141 13 140 4.32e-40 140
MS.gene34480.t1 AT5G14750 53.271 107 50 0 12 118 15 121 8.16e-40 137
MS.gene34480.t1 AT3G47600 58.491 106 44 0 14 119 13 118 9.42e-40 141
MS.gene34480.t1 AT3G13540 51.220 123 59 1 9 130 19 141 9.96e-40 139
MS.gene34480.t1 AT1G18710 57.547 106 45 0 14 119 13 118 1.11e-39 139
MS.gene34480.t1 AT3G27810 47.143 140 73 1 14 152 21 160 1.87e-39 137
MS.gene34480.t1 AT5G52600 53.636 110 51 0 7 116 6 115 2.23e-39 136
MS.gene34480.t1 AT1G79180 50.000 144 39 1 10 120 11 154 2.35e-39 140
MS.gene34480.t1 AT2G47460 48.630 146 74 1 1 146 1 145 2.74e-39 140
MS.gene34480.t1 AT5G40330 52.336 107 51 0 12 118 11 117 5.29e-39 135
MS.gene34480.t1 AT3G24310 60.577 104 41 0 14 117 19 122 8.30e-39 137
MS.gene34480.t1 AT1G48000 56.780 118 49 2 14 130 33 149 1.33e-38 135
MS.gene34480.t1 AT4G13480 60.577 104 41 0 14 117 7 110 1.46e-38 136
MS.gene34480.t1 AT1G74650 54.237 118 53 1 1 118 1 117 1.81e-38 137
MS.gene34480.t1 AT3G28910 53.448 116 53 1 14 129 13 127 1.82e-38 137
MS.gene34480.t1 AT5G62470 57.798 109 45 1 14 122 13 120 2.73e-38 137
MS.gene34480.t1 AT3G62610 53.846 117 53 1 1 117 1 116 7.06e-38 136
MS.gene34480.t1 AT5G57620 55.085 118 51 2 1 117 1 117 1.45e-37 135
MS.gene34480.t1 AT1G68320 54.867 113 50 1 14 126 20 131 2.23e-37 134
MS.gene34480.t1 AT5G62320 48.000 125 57 2 14 130 14 138 3.50e-37 132
MS.gene34480.t1 AT2G36890 48.507 134 67 2 1 133 1 133 3.83e-37 133
MS.gene34480.t1 AT2G36890 50.413 121 59 1 14 133 54 174 6.64e-37 134
MS.gene34480.t1 AT3G49690 52.000 125 58 2 1 124 1 124 8.33e-37 132
MS.gene34480.t1 AT3G11440 52.727 110 52 0 14 123 42 151 9.41e-37 135
MS.gene34480.t1 AT5G65790 50.376 133 60 3 1 132 1 128 1.43e-36 133
MS.gene34480.t1 AT3G11440 52.727 110 52 0 14 123 42 151 2.67e-36 135
MS.gene34480.t1 AT3G11440 52.727 110 52 0 14 123 42 151 2.67e-36 135
MS.gene34480.t1 AT3G11440 52.727 110 52 0 14 123 42 151 2.67e-36 135
MS.gene34480.t1 AT3G28470 58.163 98 41 0 14 111 13 110 3.59e-36 131
MS.gene34480.t1 AT5G06100 52.727 110 52 0 14 123 33 142 8.49e-36 133
MS.gene34480.t1 AT2G32460 50.877 114 56 0 14 127 19 132 1.20e-35 133
MS.gene34480.t1 AT4G37780 51.282 117 56 1 14 129 13 129 1.22e-35 129
MS.gene34480.t1 AT2G32460 50.877 114 56 0 14 127 7 120 1.30e-35 133
MS.gene34480.t1 AT5G06100 52.727 110 52 0 14 123 33 142 2.17e-35 133
MS.gene34480.t1 AT5G06100 52.727 110 52 0 14 123 33 142 2.17e-35 133
MS.gene34480.t1 AT5G06100 52.727 110 52 0 14 123 33 142 2.17e-35 133
MS.gene34480.t1 AT5G06100 52.727 110 52 0 14 123 33 142 2.17e-35 133
MS.gene34480.t1 AT2G47190 49.558 113 57 0 5 117 12 124 2.83e-35 127
MS.gene34480.t1 AT1G66370 54.369 103 47 0 14 116 9 111 3.87e-35 126
MS.gene34480.t1 AT5G59780 53.774 106 49 0 12 117 7 112 6.73e-35 125
MS.gene34480.t1 AT1G25340 47.581 124 64 1 12 134 17 140 1.46e-34 126
MS.gene34480.t1 AT5G49620 53.913 115 52 1 14 128 27 140 1.78e-34 126
MS.gene34480.t1 AT3G06490 53.913 115 52 1 14 128 20 133 2.75e-34 126
MS.gene34480.t1 AT3G53200 55.340 103 46 0 14 116 10 112 3.08e-34 124
MS.gene34480.t1 AT4G26930 54.902 102 46 0 14 115 20 121 3.44e-34 127
MS.gene34480.t1 AT2G26960 54.455 101 46 0 15 115 22 122 3.92e-34 128
MS.gene34480.t1 AT3G46130 53.846 104 48 0 14 117 10 113 5.08e-34 124
MS.gene34480.t1 AT3G60460 51.282 117 55 2 6 121 4 119 1.08e-33 124
MS.gene34480.t1 AT2G26950 46.789 109 58 0 15 123 18 126 1.20e-33 126
MS.gene34480.t1 AT5G55020 50.000 110 55 0 14 123 27 136 3.06e-33 127
MS.gene34480.t1 AT1G66380 57.282 103 44 0 14 116 9 111 3.31e-33 118
MS.gene34480.t1 AT1G56650 51.304 115 56 0 14 128 9 123 2.62e-32 119
MS.gene34480.t1 AT3G12820 71.831 71 20 0 49 119 2 72 8.62e-32 116
MS.gene34480.t1 AT5G26660 67.073 82 26 1 47 127 15 96 1.26e-31 119
MS.gene34480.t1 AT1G66390 52.252 111 53 0 6 116 1 111 1.61e-31 117
MS.gene34480.t1 AT1G25340 45.968 124 61 2 12 134 17 135 1.76e-31 118
MS.gene34480.t1 AT1G25340 45.968 124 61 2 12 134 17 135 2.92e-31 118
MS.gene34480.t1 AT5G49620 48.062 129 52 2 14 128 27 154 8.54e-31 117
MS.gene34480.t1 AT5G35550 67.568 74 24 0 47 120 51 124 1.40e-29 112
MS.gene34480.t1 AT5G59780 62.667 75 28 0 43 117 17 91 2.11e-29 110
MS.gene34480.t1 AT3G46130 62.667 75 28 0 43 117 17 91 3.58e-29 110
MS.gene34480.t1 AT3G46130 64.789 71 25 0 47 117 11 81 1.42e-28 108
MS.gene34480.t1 AT3G47600 52.083 96 42 1 24 119 21 112 2.20e-28 110
MS.gene34480.t1 AT3G53200 61.842 76 29 0 41 116 4 79 2.21e-28 108
MS.gene34480.t1 AT5G40350 47.525 101 48 1 47 142 6 106 2.28e-28 107
MS.gene34480.t1 AT5G67300 49.038 104 52 1 15 118 6 108 9.33e-28 108
MS.gene34480.t1 AT5G14750 60.000 70 28 0 49 118 18 87 9.98e-28 105
MS.gene34480.t1 AT3G27810 45.794 107 57 1 47 152 5 111 1.06e-27 105
MS.gene34480.t1 AT3G50060 46.789 109 57 1 15 123 6 113 3.44e-27 107
MS.gene34480.t1 AT4G37260 50.000 104 51 1 15 118 13 115 8.89e-27 106
MS.gene34480.t1 AT1G69560 38.356 146 75 3 15 159 107 238 1.10e-26 106
MS.gene34480.t1 AT1G69560 38.356 146 75 3 15 159 123 254 1.23e-26 106
MS.gene34480.t1 AT5G11050 31.019 216 122 5 15 214 105 309 1.59e-26 107
MS.gene34480.t1 AT2G23290 49.038 104 52 1 15 118 13 115 2.39e-26 105
MS.gene34480.t1 AT1G17950 46.078 102 54 1 15 116 5 105 2.69e-26 103
MS.gene34480.t1 AT5G02320 36.869 198 103 7 11 208 123 298 1.27e-25 105
MS.gene34480.t1 AT5G02320 36.869 198 103 7 11 208 123 298 1.27e-25 105
MS.gene34480.t1 AT5G02320 36.869 198 103 7 11 208 63 238 1.94e-25 105
MS.gene34480.t1 AT3G55730 49.038 104 52 1 15 118 56 158 8.21e-25 102
MS.gene34480.t1 AT2G39880 48.571 105 53 1 15 119 50 153 9.56e-25 101
MS.gene34480.t1 AT3G09230 48.039 102 52 1 15 116 55 155 1.03e-24 102
MS.gene34480.t1 AT1G73410 44.660 103 56 1 15 117 6 107 3.30e-24 98.2
MS.gene34480.t1 AT4G33450 34.752 141 81 2 2 142 6 135 4.73e-24 97.8
MS.gene34480.t1 AT1G73410 44.660 103 56 1 15 117 6 107 6.53e-24 96.3
MS.gene34480.t1 AT1G26780 43.137 102 57 1 15 116 98 198 1.11e-23 97.4
MS.gene34480.t1 AT1G26780 44.660 103 54 2 15 116 98 198 1.19e-23 98.6
MS.gene34480.t1 AT5G58850 36.090 133 78 2 15 147 105 230 1.70e-23 99.0
MS.gene34480.t1 AT3G23250 64.407 59 21 0 59 117 1 59 1.87e-23 95.5
MS.gene34480.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.11e-22 97.8
MS.gene34480.t1 AT4G32730 34.862 109 69 2 12 119 32 139 2.66e-13 70.1
MS.gene34480.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.11e-22 97.8
MS.gene34480.t1 AT4G32730 34.862 109 69 2 12 119 32 139 2.66e-13 70.1
MS.gene34480.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.11e-22 97.8
MS.gene34480.t1 AT4G32730 34.862 109 69 2 12 119 32 139 2.66e-13 70.1
MS.gene34480.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.11e-22 97.8
MS.gene34480.t1 AT4G32730 34.862 109 69 2 12 119 32 139 2.66e-13 70.1
MS.gene34480.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.18e-22 97.8
MS.gene34480.t1 AT4G32730 35.849 106 66 2 15 119 35 139 2.95e-13 70.1
MS.gene34480.t1 AT1G22640 48.780 82 41 1 59 139 1 82 1.31e-22 92.8
MS.gene34480.t1 AT5G17800 40.517 116 63 2 15 130 93 202 1.70e-22 95.1
MS.gene34480.t1 AT3G09370 43.396 106 59 1 11 116 131 235 7.72e-22 94.7
MS.gene34480.t1 AT3G09370 34.862 109 69 2 12 119 80 187 5.23e-13 68.9
MS.gene34480.t1 AT3G09370 43.396 106 59 1 11 116 126 230 8.96e-22 94.7
MS.gene34480.t1 AT3G09370 34.862 109 69 2 12 119 75 182 6.09e-13 68.9
MS.gene34480.t1 AT3G09370 43.396 106 59 1 11 116 139 243 1.03e-21 94.7
MS.gene34480.t1 AT3G09370 34.862 109 69 2 12 119 88 195 5.63e-13 68.9
MS.gene34480.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.08e-21 94.7
MS.gene34480.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.08e-21 94.7
MS.gene34480.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.08e-21 94.7
MS.gene34480.t1 AT4G18770 40.952 105 61 1 15 119 217 320 1.11e-21 94.0
MS.gene34480.t1 AT5G40360 39.130 115 68 2 3 117 146 258 1.21e-21 93.2
MS.gene34480.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.33e-21 94.7
MS.gene34480.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.40e-21 94.4
MS.gene34480.t1 AT3G27785 38.983 118 67 2 3 116 173 289 2.96e-21 92.8
MS.gene34480.t1 AT1G66380 60.000 70 28 0 47 116 9 78 3.38e-21 86.3
MS.gene34480.t1 AT1G71030 55.882 68 30 0 52 119 5 72 3.88e-21 88.2
MS.gene34480.t1 AT1G71030 55.882 68 30 0 52 119 19 86 4.81e-21 88.6
MS.gene34480.t1 AT3G29020 34.641 153 88 4 15 160 65 212 5.30e-21 89.4
MS.gene34480.t1 AT5G39700 36.735 147 86 3 7 151 48 189 5.87e-21 88.2
MS.gene34480.t1 AT1G66380 51.765 85 41 0 6 90 1 85 1.27e-20 84.7
MS.gene34480.t1 AT2G25230 42.000 100 56 2 18 117 29 126 1.28e-20 88.2
MS.gene34480.t1 AT4G25560 44.094 127 52 2 71 178 2 128 2.68e-20 87.0
MS.gene34480.t1 AT5G14750 55.000 60 27 0 59 118 1 60 3.02e-20 84.7
MS.gene34480.t1 AT5G14750 55.000 60 27 0 59 118 1 60 3.02e-20 84.7
MS.gene34480.t1 AT3G29020 39.806 103 61 1 15 117 67 168 4.55e-20 88.2
MS.gene34480.t1 AT2G37630 36.667 120 72 2 18 135 7 124 2.32e-18 84.0
MS.gene34480.t1 AT1G18960 32.773 119 76 3 15 132 10 125 5.76e-18 82.4
MS.gene34480.t1 AT2G02820 37.963 108 65 2 18 124 33 139 1.53e-17 81.3
MS.gene34480.t1 AT2G02820 37.963 108 65 2 18 124 33 139 2.04e-17 82.0
MS.gene34480.t1 AT2G02820 37.963 108 65 2 18 124 33 139 2.55e-17 81.6
MS.gene34480.t1 AT4G00540 37.391 115 68 2 6 117 94 207 8.15e-17 79.7
MS.gene34480.t1 AT4G00540 29.134 127 82 3 2 120 33 159 8.47e-13 68.2
MS.gene34480.t1 AT4G00540 37.391 115 68 2 6 117 92 205 1.33e-16 79.3
MS.gene34480.t1 AT4G00540 31.579 114 70 3 15 120 44 157 2.34e-12 67.0
MS.gene34480.t1 AT1G14350 37.273 110 67 2 18 126 28 136 2.03e-16 79.0
MS.gene34480.t1 AT1G14350 37.273 110 67 2 18 126 28 136 2.03e-16 79.0
MS.gene34480.t1 AT5G40430 36.893 103 62 3 15 117 54 153 6.23e-15 73.2
MS.gene34480.t1 AT5G59780 55.319 47 21 0 71 117 1 47 1.40e-12 64.7
MS.gene34480.t1 AT3G46130 55.319 47 21 0 71 117 1 47 2.26e-12 64.7
MS.gene34480.t1 AT3G18100 30.147 136 86 2 14 145 545 675 1.27e-11 65.1
MS.gene34480.t1 AT3G18100 30.147 136 86 2 14 145 497 627 1.34e-11 65.1
MS.gene34480.t1 AT3G18100 30.147 136 86 2 14 145 384 514 1.41e-11 64.7
MS.gene34480.t1 AT3G18100 30.147 136 86 2 14 145 332 462 1.46e-11 64.7
MS.gene34480.t1 AT5G61420 55.000 60 24 2 82 140 2 59 2.07e-11 63.5

Find 52 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACCAACCTGCCTTAAT+TGG 0.183204 1.2:+75461436 None:intergenic
AACAACCATGACCATGTTTA+AGG 0.206159 1.2:+75461470 None:intergenic
TACAAATTCAGTTGAATCTT+TGG 0.229080 1.2:-75459647 MS.gene34480:CDS
ATCTCATTGTCTGTCCTTCC+TGG 0.240508 1.2:+75459916 None:intergenic
CTGAGTTTGTGATCTTCTTC+AGG 0.242651 1.2:+75461502 None:intergenic
GCAAATCAAATTGTGGGAAA+TGG 0.281472 1.2:-75459490 MS.gene34480:CDS
TTGGAGCTCTGTCCCAATTA+AGG 0.299321 1.2:-75461449 MS.gene34480:CDS
CAAAACATAGAAAAGGTTTA+TGG 0.327160 1.2:-75461528 MS.gene34480:CDS
CATTCAGCAAACAATAGTTT+TGG 0.334613 1.2:+75459703 None:intergenic
TGATTCCATTTCCATAGCTT+TGG 0.339299 1.2:+75459855 None:intergenic
TAAGGTGGATTAACTATCTA+AGG 0.341722 1.2:-75461019 MS.gene34480:CDS
GGTGCTTTGATGTGTCTCTT+TGG 0.342200 1.2:+75459729 None:intergenic
CAAATCAAATTGTGGGAAAT+GGG 0.348116 1.2:-75459489 MS.gene34480:CDS
CATTGGATCATGTTAATAGT+AGG 0.371174 1.2:-75459675 MS.gene34480:CDS
AACTTTCCTCTCTTTAATCC+TGG 0.382456 1.2:+75460996 None:intergenic
GTTTGCTGAATGGCTTTCAT+TGG 0.388754 1.2:-75459692 MS.gene34480:CDS
CAAAACTATTGTTTGCTGAA+TGG 0.398678 1.2:-75459702 MS.gene34480:CDS
GGGTTTGTCCATTGCATGCC+TGG 0.405137 1.2:-75459469 MS.gene34480:CDS
GAATCTTTGGTCATGAGAAA+TGG 0.412406 1.2:-75459634 MS.gene34480:CDS
GAGAGGAAAGTTCAGCAAAC+AGG 0.416883 1.2:-75460985 MS.gene34480:CDS
TTAAACATGGTCATGGTTGT+TGG 0.431623 1.2:-75461468 MS.gene34480:CDS
AAATTTGCAAATCAAATTGT+GGG 0.441722 1.2:-75459496 MS.gene34480:CDS
TAAATTTGCAAATCAAATTG+TGG 0.468216 1.2:-75459497 MS.gene34480:CDS
AGTGGCCAAAGCTATGGAAA+TGG 0.470398 1.2:-75459860 MS.gene34480:CDS
CTCACCCTTCATCACATGTT+AGG 0.480777 1.2:-75460948 MS.gene34480:CDS
GAAACCAACCTGCCTTAATT+GGG 0.488214 1.2:+75461437 None:intergenic
AATGATGCAATGTACGTTTG+AGG 0.502056 1.2:-75459415 None:intergenic
ATGCAAGAGGGACCATTCAA+TGG 0.504386 1.2:-75459577 MS.gene34480:CDS
ACAAAACCAAAACATAGAAA+AGG 0.509605 1.2:-75461535 MS.gene34480:CDS
AAAGAGAGTGGCCAAAGCTA+TGG 0.515504 1.2:-75459866 MS.gene34480:CDS
TGTATAGACTTGCAAAGGAA+TGG 0.516964 1.2:-75461056 MS.gene34480:intron
TTATGAAACTCTCCATTGAA+TGG 0.518250 1.2:+75459565 None:intergenic
TGGATTAACTATCTAAGGCC+AGG 0.519824 1.2:-75461014 MS.gene34480:CDS
AAAGTTCAGCAAACAGGAGG+AGG 0.533564 1.2:-75460979 MS.gene34480:CDS
GTGATGTTGTTATAATTGTG+TGG 0.534849 1.2:+75459751 None:intergenic
AGCTCTGTCCCAATTAAGGC+AGG 0.541894 1.2:-75461445 MS.gene34480:intron
CATCTCAGTGGCTGAAATGT+TGG 0.543027 1.2:+75459534 None:intergenic
TTGTTACTTAAATCAACTCC+AGG 0.543581 1.2:+75459451 None:intergenic
CAGATAGCACAACATTTGCC+AGG 0.553213 1.2:-75459934 MS.gene34480:CDS
TGTTGCCTAACATGTGATGA+AGG 0.568808 1.2:+75460943 None:intergenic
AATCAACTCCAGGCATGCAA+TGG 0.573572 1.2:+75459461 None:intergenic
TAGCACAACATTTGCCAGGA+AGG 0.581725 1.2:-75459930 MS.gene34480:CDS
TCAAGAAGCTACAATGCAAG+AGG 0.583454 1.2:-75459590 MS.gene34480:CDS
TACATCCTTAAACATGGTCA+TGG 0.598095 1.2:-75461475 MS.gene34480:CDS
ATACATGTATAGACTTGCAA+AGG 0.603901 1.2:-75461061 MS.gene34480:intron
CTAAGGCCAGGATTAAAGAG+AGG 0.629264 1.2:-75461002 MS.gene34480:CDS
AGGAAAGTTCAGCAAACAGG+AGG 0.649041 1.2:-75460982 MS.gene34480:CDS
CAAGAAGCTACAATGCAAGA+GGG 0.649433 1.2:-75459589 MS.gene34480:CDS
AGAAACTACATCCTTAAACA+TGG 0.675410 1.2:-75461481 MS.gene34480:CDS
CTAACATGTGATGAAGGGTG+AGG 0.683728 1.2:+75460949 None:intergenic
GTTGCCTAACATGTGATGAA+GGG 0.702714 1.2:+75460944 None:intergenic
CTGTGAATTGAACATCTCAG+TGG 0.748090 1.2:+75459522 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAATTATCTATCAAA+TGG + chr1.2:75460610-75460629 None:intergenic 10.0%
!!! TAAAATTTAATGATGATGAA+CGG - chr1.2:75460651-75460670 MS.gene34480:intron 15.0%
!!! TTCTAATAATTTTCAATTAC+TGG - chr1.2:75460898-75460917 MS.gene34480:intron 15.0%
!!! TTTTAGATAATTCTAAATAG+TGG + chr1.2:75460636-75460655 None:intergenic 15.0%
!! AAATTTGCAAATCAAATTGT+GGG - chr1.2:75461480-75461499 MS.gene34480:CDS 20.0%
!! AATTTGTATATTGCATAGTT+TGG + chr1.2:75460939-75460958 None:intergenic 20.0%
!! ACAATGAGATAAAAAACTAT+TGG - chr1.2:75461073-75461092 MS.gene34480:intron 20.0%
!! ACCTACTTATAAATATGATT+AGG + chr1.2:75459590-75459609 None:intergenic 20.0%
!! CCTACTTATAAATATGATTA+GGG + chr1.2:75459589-75459608 None:intergenic 20.0%
!! CTTAAGTTAGAGAATATAAT+TGG - chr1.2:75460155-75460174 MS.gene34480:intron 20.0%
!! TAAATTTGCAAATCAAATTG+TGG - chr1.2:75461479-75461498 MS.gene34480:CDS 20.0%
!! TATTCAATTGTTCTATCTAA+TGG - chr1.2:75459881-75459900 MS.gene34480:CDS 20.0%
!!! TTGATTTTTGCTAAAATGTA+TGG - chr1.2:75459826-75459845 MS.gene34480:CDS 20.0%
!!! TTTATTTTATAGAAGCAACT+AGG - chr1.2:75460207-75460226 MS.gene34480:intron 20.0%
!!! TTTGTTTTCCTTTGTTTTTA+TGG - chr1.2:75460782-75460801 MS.gene34480:intron 20.0%
! AATATACAGAATTGAGGAAT+AGG + chr1.2:75460358-75460377 None:intergenic 25.0%
! ACAAAACCAAAACATAGAAA+AGG - chr1.2:75459441-75459460 MS.gene34480:CDS 25.0%
! AGTTTGAATATACAGAATTG+AGG + chr1.2:75460364-75460383 None:intergenic 25.0%
! CAAAACATAGAAAAGGTTTA+TGG - chr1.2:75459448-75459467 MS.gene34480:CDS 25.0%
! CCCTAATCATATTTATAAGT+AGG - chr1.2:75459586-75459605 MS.gene34480:CDS 25.0%
! GAGAGAAAAAAAAAAAAGCA+TGG - chr1.2:75460242-75460261 MS.gene34480:intron 25.0%
! GTTAGAGAATATAATTGGAT+TGG - chr1.2:75460160-75460179 MS.gene34480:intron 25.0%
! TAAGAGTTTGAATCCTAAAA+TGG - chr1.2:75459654-75459673 MS.gene34480:CDS 25.0%
! TACAAATTCAGTTGAATCTT+TGG - chr1.2:75461329-75461348 MS.gene34480:intron 25.0%
! TCATTTATTTCCAATTACCA+AGG - chr1.2:75460545-75460564 MS.gene34480:intron 25.0%
! TGTTAGTTCCATAAAAACAA+AGG + chr1.2:75460793-75460812 None:intergenic 25.0%
! TTCATATTTGAAAAAGAGAG+TGG - chr1.2:75461098-75461117 MS.gene34480:intron 25.0%
!! AATTCACTACTTTGAACTTT+TGG + chr1.2:75460123-75460142 None:intergenic 25.0%
!! CATAAACCTTTTCTATGTTT+TGG + chr1.2:75459450-75459469 None:intergenic 25.0%
!! CATGCTCTTCTTTTTAATAA+TGG - chr1.2:75460303-75460322 MS.gene34480:intron 25.0%
!! GAAATGGCCTTAAATTATAT+TGG - chr1.2:75461008-75461027 MS.gene34480:CDS 25.0%
!! TCTTTAGAAGTAGAAGTTTA+CGG - chr1.2:75460677-75460696 MS.gene34480:intron 25.0%
AGAAACTACATCCTTAAACA+TGG - chr1.2:75459495-75459514 MS.gene34480:CDS 30.0%
ATACATGTATAGACTTGCAA+AGG - chr1.2:75459915-75459934 MS.gene34480:CDS 30.0%
ATAGTTTGGAAAATTCTACC+TGG + chr1.2:75460925-75460944 None:intergenic 30.0%
ATGTTTACTATGATTGGTGT+CGG - chr1.2:75460708-75460727 MS.gene34480:intron 30.0%
CAAATCAAATTGTGGGAAAT+GGG - chr1.2:75461487-75461506 MS.gene34480:CDS 30.0%
CACCTGACCAATATAATTTA+AGG + chr1.2:75461018-75461037 None:intergenic 30.0%
CATTGGATCATGTTAATAGT+AGG - chr1.2:75461301-75461320 MS.gene34480:intron 30.0%
CTTAAATTATATTGGTCAGG+TGG - chr1.2:75461016-75461035 MS.gene34480:CDS 30.0%
CTTAGCACTCTTCATTTAAA+GGG + chr1.2:75460987-75461006 None:intergenic 30.0%
GTGATGTTGTTATAATTGTG+TGG + chr1.2:75461228-75461247 None:intergenic 30.0%
TCAACAGTTCTTAATAGCTA+AGG + chr1.2:75459810-75459829 None:intergenic 30.0%
TCTTAGCACTCTTCATTTAA+AGG + chr1.2:75460988-75461007 None:intergenic 30.0%
TTATGAAACTCTCCATTGAA+TGG + chr1.2:75461414-75461433 None:intergenic 30.0%
TTCAAACTAAGCCTATTTCA+AGG - chr1.2:75460376-75460395 MS.gene34480:intron 30.0%
TTGGTTTCTTTCTTCTTCAA+AGG - chr1.2:75459554-75459573 MS.gene34480:CDS 30.0%
! AAAAAAAAGCATGGCTTGAT+TGG - chr1.2:75460251-75460270 MS.gene34480:intron 30.0%
! AGAGAATATAATTGGATTGG+AGG - chr1.2:75460163-75460182 MS.gene34480:intron 30.0%
! CAAAACTATTGTTTGCTGAA+TGG - chr1.2:75461274-75461293 MS.gene34480:intron 30.0%
! CATTCAGCAAACAATAGTTT+TGG + chr1.2:75461276-75461295 None:intergenic 30.0%
! GAGAATATAATTGGATTGGA+GGG - chr1.2:75460164-75460183 MS.gene34480:intron 30.0%
! TAATTTTCAATTACTGGTCC+AGG - chr1.2:75460904-75460923 MS.gene34480:intron 30.0%
! TTGTTACTTAAATCAACTCC+AGG + chr1.2:75461528-75461547 None:intergenic 30.0%
!! TAAGGTGGATTAACTATCTA+AGG - chr1.2:75459957-75459976 MS.gene34480:intron 30.0%
!!! AGCAAACAATAGTTTTGGTA+AGG + chr1.2:75461271-75461290 None:intergenic 30.0%
!!! GTGTGTGTAGCAATTTTTTT+TGG + chr1.2:75460496-75460515 None:intergenic 30.0%
!!! TTTGGTTTTGTCTTTTCTAG+TGG + chr1.2:75459432-75459451 None:intergenic 30.0%
AACAACCATGACCATGTTTA+AGG + chr1.2:75459509-75459528 None:intergenic 35.0%
AACTTTCCTCTCTTTAATCC+TGG + chr1.2:75459983-75460002 None:intergenic 35.0%
AGAGATGAAATAAACCTGTG+TGG - chr1.2:75460568-75460587 MS.gene34480:intron 35.0%
AGGTTTATTTCATCTCTCCT+TGG + chr1.2:75460565-75460584 None:intergenic 35.0%
CACCAATCATAGTAAACATG+AGG + chr1.2:75460707-75460726 None:intergenic 35.0%
CTCCTCATGTTTACTATGAT+TGG - chr1.2:75460702-75460721 MS.gene34480:intron 35.0%
GAATCTTTGGTCATGAGAAA+TGG - chr1.2:75461342-75461361 MS.gene34480:intron 35.0%
GCAAATCAAATTGTGGGAAA+TGG - chr1.2:75461486-75461505 MS.gene34480:CDS 35.0%
GGAACACATAACCTTGAAAT+AGG + chr1.2:75460390-75460409 None:intergenic 35.0%
GGCCTTAAATTATATTGGTC+AGG - chr1.2:75461013-75461032 MS.gene34480:CDS 35.0%
GTGAAGGAAAACTCTATAGA+AGG + chr1.2:75460411-75460430 None:intergenic 35.0%
TACATCCTTAAACATGGTCA+TGG - chr1.2:75459501-75459520 MS.gene34480:CDS 35.0%
TACGATTCTCTTTGTTCTTG+CGG + chr1.2:75460837-75460856 None:intergenic 35.0%
TGATTCCATTTCCATAGCTT+TGG + chr1.2:75461124-75461143 None:intergenic 35.0%
TGTATAGACTTGCAAAGGAA+TGG - chr1.2:75459920-75459939 MS.gene34480:CDS 35.0%
TTAAACATGGTCATGGTTGT+TGG - chr1.2:75459508-75459527 MS.gene34480:CDS 35.0%
! AGCAACTAGGCTCTATTTTA+TGG - chr1.2:75460220-75460239 MS.gene34480:intron 35.0%
! CTACTGATTGAAGTTTGTGA+AGG + chr1.2:75460427-75460446 None:intergenic 35.0%
! TTTCATCTCTCCTTGGTAAT+TGG + chr1.2:75460558-75460577 None:intergenic 35.0%
!! ATGAAGAGTGCTAAGAGAAA+TGG - chr1.2:75460992-75461011 MS.gene34480:CDS 35.0%
!! ATTTAAAGTTTTTGCCCGTG+AGG - chr1.2:75459617-75459636 MS.gene34480:CDS 35.0%
!! GTGACATTGATGACCATTTT+AGG + chr1.2:75459670-75459689 None:intergenic 35.0%
!! GTTGCAAGTTTTTGAAGAGA+GGG + chr1.2:75461198-75461217 None:intergenic 35.0%
!! TGTTGCAAGTTTTTGAAGAG+AGG + chr1.2:75461199-75461218 None:intergenic 35.0%
AAACCTGTGTGGTGAGATTT+GGG - chr1.2:75460579-75460598 MS.gene34480:intron 40.0%
AGAAACCAACCTGCCTTAAT+TGG + chr1.2:75459543-75459562 None:intergenic 40.0%
ATGGAAAAAGCTGCAGACTA+AGG - chr1.2:75459939-75459958 MS.gene34480:CDS 40.0%
CAAGAAGCTACAATGCAAGA+GGG - chr1.2:75461387-75461406 MS.gene34480:intron 40.0%
CTGAGTTTGTGATCTTCTTC+AGG + chr1.2:75459477-75459496 None:intergenic 40.0%
CTGTGAATTGAACATCTCAG+TGG + chr1.2:75461457-75461476 None:intergenic 40.0%
CTTGATTGGTAAGTCAAACC+AGG - chr1.2:75460265-75460284 MS.gene34480:intron 40.0%
GAAACCAACCTGCCTTAATT+GGG + chr1.2:75459542-75459561 None:intergenic 40.0%
GTTGCCTAACATGTGATGAA+GGG + chr1.2:75460035-75460054 None:intergenic 40.0%
TAAACCTGTGTGGTGAGATT+TGG - chr1.2:75460578-75460597 MS.gene34480:intron 40.0%
TCAAGAAGCTACAATGCAAG+AGG - chr1.2:75461386-75461405 MS.gene34480:intron 40.0%
TGGTAAGTCAAACCAGGAAT+TGG - chr1.2:75460271-75460290 MS.gene34480:intron 40.0%
TGTTGCCTAACATGTGATGA+AGG + chr1.2:75460036-75460055 None:intergenic 40.0%
! GTTTGCTGAATGGCTTTCAT+TGG - chr1.2:75461284-75461303 MS.gene34480:intron 40.0%
! TGGATTAACTATCTAAGGCC+AGG - chr1.2:75459962-75459981 MS.gene34480:intron 40.0%
!! GTTTTGTCTTTTCTAGTGGC+TGG + chr1.2:75459428-75459447 None:intergenic 40.0%
AAAGAGAGTGGCCAAAGCTA+TGG - chr1.2:75461110-75461129 MS.gene34480:intron 45.0%
AAAGTTCAGCAAACAGGAGG+AGG - chr1.2:75459997-75460016 MS.gene34480:intron 45.0%
AACCTGTGTGGTGAGATTTG+GGG - chr1.2:75460580-75460599 MS.gene34480:intron 45.0%
AATCAACTCCAGGCATGCAA+TGG + chr1.2:75461518-75461537 None:intergenic 45.0%
ACTACAAAGCTGACACCTCA+CGG + chr1.2:75459635-75459654 None:intergenic 45.0%
AGGAAAGTTCAGCAAACAGG+AGG - chr1.2:75459994-75460013 MS.gene34480:intron 45.0%
AGTCAAACCAGGAATTGGCT+TGG - chr1.2:75460276-75460295 MS.gene34480:intron 45.0%
AGTGGCCAAAGCTATGGAAA+TGG - chr1.2:75461116-75461135 MS.gene34480:intron 45.0%
ATCTCATTGTCTGTCCTTCC+TGG + chr1.2:75461063-75461082 None:intergenic 45.0%
ATGCAAGAGGGACCATTCAA+TGG - chr1.2:75461399-75461418 MS.gene34480:intron 45.0%
ATGCTAACCAAGCCAATTCC+TGG + chr1.2:75460286-75460305 None:intergenic 45.0%
CAGATAGCACAACATTTGCC+AGG - chr1.2:75461042-75461061 MS.gene34480:CDS 45.0%
CATCTCAGTGGCTGAAATGT+TGG + chr1.2:75461445-75461464 None:intergenic 45.0%
CTAACATGTGATGAAGGGTG+AGG + chr1.2:75460030-75460049 None:intergenic 45.0%
CTAAGGCCAGGATTAAAGAG+AGG - chr1.2:75459974-75459993 MS.gene34480:intron 45.0%
CTCACCCTTCATCACATGTT+AGG - chr1.2:75460028-75460047 MS.gene34480:intron 45.0%
GAAAAAGCTGCAGACTAAGG+TGG - chr1.2:75459942-75459961 MS.gene34480:CDS 45.0%
GAGAGGAAAGTTCAGCAAAC+AGG - chr1.2:75459991-75460010 MS.gene34480:intron 45.0%
GGTGCTTTGATGTGTCTCTT+TGG + chr1.2:75461250-75461269 None:intergenic 45.0%
TAGCACAACATTTGCCAGGA+AGG - chr1.2:75461046-75461065 MS.gene34480:CDS 45.0%
TTGGAGCTCTGTCCCAATTA+AGG - chr1.2:75459527-75459546 MS.gene34480:CDS 45.0%
AGCTCTGTCCCAATTAAGGC+AGG - chr1.2:75459531-75459550 MS.gene34480:CDS 50.0%
CTACAAAGCTGACACCTCAC+GGG + chr1.2:75459634-75459653 None:intergenic 50.0%
CTGTCCCAATTAAGGCAGGT+TGG - chr1.2:75459535-75459554 MS.gene34480:CDS 50.0%
GGTTGAGACTGTGACGTGAT+AGG + chr1.2:75460816-75460835 None:intergenic 50.0%
CACCCCAAATCTCACCACAC+AGG + chr1.2:75460585-75460604 None:intergenic 55.0%
CTGTGTGGTGAGATTTGGGG+TGG - chr1.2:75460583-75460602 MS.gene34480:intron 55.0%
GGGTTTGTCCATTGCATGCC+TGG - chr1.2:75461507-75461526 MS.gene34480:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75459417 75461581 75459417 ID=MS.gene34480
chr1.2 mRNA 75459417 75461581 75459417 ID=MS.gene34480.t1;Parent=MS.gene34480
chr1.2 exon 75461446 75461581 75461446 ID=MS.gene34480.t1.exon1;Parent=MS.gene34480.t1
chr1.2 CDS 75461446 75461581 75461446 ID=cds.MS.gene34480.t1;Parent=MS.gene34480.t1
chr1.2 exon 75460942 75461071 75460942 ID=MS.gene34480.t1.exon2;Parent=MS.gene34480.t1
chr1.2 CDS 75460942 75461071 75460942 ID=cds.MS.gene34480.t1;Parent=MS.gene34480.t1
chr1.2 exon 75459417 75459963 75459417 ID=MS.gene34480.t1.exon3;Parent=MS.gene34480.t1
chr1.2 CDS 75459417 75459963 75459417 ID=cds.MS.gene34480.t1;Parent=MS.gene34480.t1
Gene Sequence

>MS.gene34480

ATGGGGTTCCAGCCACTAGAAAAGACAAAACCAAAACATAGAAAAGGTTTATGGTCACCTGAAGAAGATCACAAACTCAGAAACTACATCCTTAAACATGGTCATGGTTGTTGGAGCTCTGTCCCAATTAAGGCAGGTTGGTTTCTTTCTTCTTCAAAGGTGTATTATTCCCTAATCATATTTATAAGTAGGTCATTGTAATTTAAAGTTTTTGCCCGTGAGGTGTCAGCTTTGTAGTAAGAGTTTGAATCCTAAAATGGTCATCAATGTCACGTTAATTTTTTTTTTTTTTTTTTTTTGAAAGAGTCACGTTAATTAATAGTAATGATTTCTCTCTTTTTTATATTTACTTTCAAAAAGTTCTTGTGCTACTGAAGTTTTTAATTAAGTCCTTAGCTATTAAGAACTGTTGATTTTTGCTAAAATGTATGGATTGATTTGAAGAATCATAGTGTATAAGATCATATTCAATTGTTCTATCTAATGGAGTACAATGTCATACATGTATAGACTTGCAAAGGAATGGAAAAAGCTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGAAAGTTCAGCAAACAGGAGGAGGAAACAATCCTCACCCTTCATCACATGTTAGGCAACAAGTATGTTAGTAGAGTAAATCTACTTTTACTTTTTGTCATTTATTTTTCTAAGTTCAATTTTATCCAAAAGTTCAAAGTAGTGAATTTTATGTGAAAGTCTTAAGTTAGAGAATATAATTGGATTGGAGGGTAGTTTCATATATAATTTTATTTATTTTATAGAAGCAACTAGGCTCTATTTTATGGAGAGAAAAAAAAAAAAGCATGGCTTGATTGGTAAGTCAAACCAGGAATTGGCTTGGTTAGCATGCTCTTCTTTTTAATAATGGATGAACATTGAACAAAATATATTGATTATCCTATTCCTCAATTCTGTATATTCAAACTAAGCCTATTTCAAGGTTATGTGTTCCTTCTATAGAGTTTTCCTTCACAAACTTCAATCAGTAGTATTATCAAACTTTTTTTAATTCAAATACAGTACAACTATTTCACACCAAAAAAAATTGCTACACACACATGCACAATGCATACTCGATGAGATTAATTCATTTATTTCCAATTACCAAGGAGAGATGAAATAAACCTGTGTGGTGAGATTTGGGGTGGACCATTTGATAGATAATTTAATATGAACCACTATTTAGAATTATCTAAAATTTAATGATGATGAACGGCGTTCTTTAGAAGTAGAAGTTTACGGTACTCCTCATGTTTACTATGATTGGTGTCGGTTTGACAAAAACAAAGAAAAACAAATATGAATTGAGTTTGAAGAATGCATATTTGTTTTCCTTTGTTTTTATGGAACTAACACCTATCACGTCACAGTCTCAACCGCAAGAACAAAGAGAATCGTAAACTTCTACTTTCAAAAGACGATGTCTATGATCATTGAAGTTTCTAATAATTTTCAATTACTGGTCCAGGTAGAATTTTCCAAACTATGCAATATACAAATTTTCATGTACTCTTTTAATCTTTTTTCCCTTTAAATGAAGAGTGCTAAGAGAAATGGCCTTAAATTATATTGGTCAGGTGGTCACAGATAGCACAACATTTGCCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTATGGAAATGGAATCACACAAACAATTTCAATATGCTAGCTCAAGCTCAGATACAATGAACTCTTCACCCTCTCTTCAAAAACTTGCAACACAAGATCCACACAATTATAACAACATCACCAAAGAGACACATCAAAGCACCTTACCAAAACTATTGTTTGCTGAATGGCTTTCATTGGATCATGTTAATAGTAGGAACTCTACAAATTCAGTTGAATCTTTGGTCATGAGAAATGGATTTGATCAAAATTCAGCTTTTCAAGAAGCTACAATGCAAGAGGGACCATTCAATGGAGAGTTTCATAATAGTGTGACCAACATTTCAGCCACTGAGATGTTCAATTCACAGCTTAAATTTGCAAATCAAATTGTGGGAAATGGGTTTGTCCATTGCATGCCTGGAGTTGATTTAAGTAACAATTTCAATCTAAGCAATGATGCAATGTACGTTTGA
Protein sequence

>MS.gene34480.t1

MGFQPLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKADLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAMEMESHKQFQYASSSSDTMNSSPSLQKLATQDPHNYNNITKETHQSTLPKLLFAEWLSLDHVNSRNSTNSVESLVMRNGFDQNSAFQEATMQEGPFNGEFHNSVTNISATEMFNSQLKFANQIVGNGFVHCMPGVDLSNNFNLSNDAMYV