AlfalfaGEDB | MS.gene34654

M. sativa cultivar XinJiangDaYe / MS.gene34654

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34654.t1	XP_013445689.1	92.1	761	57	1	1	761	1	758	0.00E+00	1408.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34654.t1	Q9LK35	48.4	793	339	12	10	735	4	793	1.6e-188	661.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34654.t1	A0A072U1N9	92.1	761	57	1	1	761	1	758	0.0e+00	1408.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34654.t1	MTR_8g467150	92.116	761	57	1	1	761	1	758	0.0	1458
MS.gene34654.t1	MTR_1g040073	62.578	799	202	14	1	761	1	740	0.0	941
MS.gene34654.t1	MTR_2g080220	51.742	775	316	11	16	735	14	785	0.0	725
MS.gene34654.t1	MTR_4g061833	42.487	772	380	18	27	740	26	791	0.0	566
MS.gene34654.t1	MTR_4g061930	42.487	772	380	18	27	740	26	791	0.0	566
MS.gene34654.t1	MTR_1g040077	54.146	591	176	13	1	553	1	534	0.0	562
MS.gene34654.t1	MTR_8g037700	41.744	757	381	15	29	731	59	809	0.0	562
MS.gene34654.t1	MTR_2g096160	40.418	814	390	19	2	740	1	794	0.0	549
MS.gene34654.t1	MTR_4g109010	39.693	781	389	18	28	732	41	815	1.78e-167	513
MS.gene34654.t1	MTR_2g030310	38.758	805	392	18	12	731	12	800	4.31e-165	498

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34654.t1	AT5G54380	48.805	795	333	14	10	735	4	793	0.0	669
MS.gene34654.t1	AT4G39110	42.140	757	380	16	29	731	52	804	0.0	569
MS.gene34654.t1	AT2G21480	41.974	760	381	15	27	731	49	803	0.0	566
MS.gene34654.t1	AT5G59700	42.228	772	373	18	14	731	9	761	0.0	552
MS.gene34654.t1	AT3G46290	39.949	786	392	16	4	731	1	764	3.34e-180	537
MS.gene34654.t1	AT5G61350	41.162	792	379	20	24	732	23	810	3.81e-177	529
MS.gene34654.t1	AT1G30570	38.071	788	406	14	34	745	32	813	8.94e-166	500
MS.gene34654.t1	AT5G24010	39.211	760	392	18	25	729	22	766	3.53e-163	493
MS.gene34654.t1	AT2G39360	37.935	775	401	20	14	729	12	765	1.21e-162	491
MS.gene34654.t1	AT3G51550	38.673	799	394	23	25	733	26	818	8.49e-154	471

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Find 170 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTAAACCACCGTG+AGG	0.724745	8.1:+46647689	None:intergenic
AAACAAGTAAACCACCGTGA+GGG	0.671182	8.1:+46647690	None:intergenic
AAAGTAAGTTTGGCCTTACA+GGG	0.539938	8.1:+46647336	None:intergenic
AAATCAGATGTTTACTCGTT+CGG	0.345898	8.1:-46646300	MS.gene34654:CDS
AACAAAACGTCCTTGTAATA+TGG	0.229366	8.1:+46647194	None:intergenic
AACAGTGTATCGATTGAATG+TGG	0.613919	8.1:-46647576	MS.gene34654:CDS
AACGAGATTGAGTTGTTGTC+TGG	0.455747	8.1:-46646714	MS.gene34654:CDS
AACGGCTTGGGATAGGCATA+GGG	0.486340	8.1:-46646551	MS.gene34654:CDS
AACTTAGTCCTAAAATATTC+TGG	0.311222	8.1:+46646333	None:intergenic
AAGAACAAACGGTGTACACT+TGG	0.526229	8.1:+46648177	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAGATGTTTACTCGTT+CGG	-	chr8.1:46647829-46647848	MS.gene34654:CDS	30.0%
AACAAAACGTCCTTGTAATA+TGG	+	chr8.1:46646938-46646957	None:intergenic	30.0%
AGCGACCAAATAATTATCAA+CGG	+	chr8.1:46646027-46646046	None:intergenic	30.0%
AGGTTGTTGTAATGAAAACT+CGG	-	chr8.1:46647468-46647487	MS.gene34654:CDS	30.0%
ATCAACGATTACCGTTATTA+AGG	+	chr8.1:46646312-46646331	None:intergenic	30.0%
CATATTATGTCAACTAGAAG+AGG	-	chr8.1:46648083-46648102	MS.gene34654:CDS	30.0%
GAATGTTCAAAATCAATGTC+AGG	+	chr8.1:46646095-46646114	None:intergenic	30.0%
GATTCTAGTGTACAATTACA+TGG	-	chr8.1:46647495-46647514	MS.gene34654:CDS	30.0%
GCATTAAGCTGCAATAAAAA+GGG	-	chr8.1:46647934-46647953	MS.gene34654:CDS	30.0%
GTATTGCTTGAAGTTATATG+TGG	-	chr8.1:46647856-46647875	MS.gene34654:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	46645933	46648218	46645933	ID=MS.gene34654
chr8.1	mRNA	46645933	46648218	46645933	ID=MS.gene34654.t1;Parent=MS.gene34654
chr8.1	exon	46645933	46648218	46645933	ID=MS.gene34654.t1.exon1;Parent=MS.gene34654.t1
chr8.1	CDS	46645933	46648218	46645933	ID=cds.MS.gene34654.t1;Parent=MS.gene34654.t1

Gene Sequence

>MS.gene34654

ATGGTGATGCTAGAAGTTGCCAAGTGTACACCGTTTGTTCTTATTCTTTTACTAAACCTCACATGTCAAGAGTCATTCGCGTCATTCTATCCCGTTGATAATTATTTGGTCGCTTGTGGTTCTTCCCACAGTGTCACGTTTCAGGGTCGAACTTTCGTACCTGACATTGATTTTGAACATTCCAACTTTCAAATAAAAGGAGAAAAATCTTTGGTTGCTACCTCTAAACTGAACAATACCCTTTCACCACTTTATAACTCGGCCCGAATCTTCTTTGAAAAGGCATCCTATACATTCAAAATTCAACAACATGGCAGACACTGGATCCGTCTCTATTTTCACCCTTTACCCGATTCCAACCACAACATGACCTTTGCCTTAATAACGGTAATCGTTGATGGTTATGTGCTTCTTGATAACTTCACTTTTGCAAACTATAGTAACTCTCACTTGATGAAGGAGTATGCAATCAGTGTCACATCTGATGAATTGATTGTCACATTCATCCCTCACGGTGGTTTACTTGTTTTTGTTAATGCCATTGAAGTTGTAACTATGCCAGATGTGCTCTTTCCTGACAATCTAAATCCATCTACCCCTTTCACAGAATCCGTACTTGAAACAGTGTATCGATTGAATGTGGGAGGCGCAAGTATCAATGCTCAAAATGACACGCTTAGTAGGAGTTGGGAGAGTGATGAAACTTACTTTCGCTCCACCATTACTGCGCTGAATATTTCAACAAGCGTTTCTGCTATAAAGCATCCTGATTTCTTAGAAATTGCAGCACCACCAGTGGTTTATGCTACTGCTAAAGCCATGGGAAGTCCCTCAAGGGGTTACCGCTTAAATTGGGTATTCCCTGTAAGGCCAAACTTACTTTATTTTGTTCGCGTGCATTTCTGTGACATGATTAGCAACACTACTAACTATATGGTCGTGGATCTATTTATGAATGGTAACAGAACCAAGGAGATAAGGGTTTCTGGTGACTTTGTCGAACCATATTACAAGGACGTTTTGTTCAATGCCATAGAGGAGACTCTCACAGTAAGTGTTGGTCCTACAACAATGTCTACTATAGACAATGCAACCTTGAATGGGATAGAGATAATGAAGTTCATTAACAGAGTTGACAGTGTTCTAACAAAATCTTCAGAAAGAATTCAAAGAAACAAGAAATTAAAATTACTCATTATAATTGGATGTGGTTTATCTGTTTTAACAATTCTAGCATTTCTTGGACTATCATTTTCTTATCTAAAATCCTGCAGGTCCAAGAAAAATTCAGTAAATGCTTACAACTTTCTGAGGCATTTTACTTTGCATGAGATCAAACAAGCAACAAATAATTTTCATGCTGAGCTGCTTATTGGAGCAGGAGGATTTGGAAAGGTGTATAAAGGAAAACTAGAAAATGGGAAAAGAGTAGCCATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCTCGGTGAATTCCATAACGAGATTGAGTTGTTGTCTGGTCTTCGTCATTCAAATCTTGTCTCTCTCGTAGGTTGTTGTAATGAAAACTCGGAACTGATTCTAGTGTACAATTACATGGCAAATGGATCTCTCAGTAGTCATCTATATGGGAAAGACTTTGTTCCGCTGTCTTGGAAGCAACGGCTTGGGATAGGCATAGGGGCTGCGAAGGGACTTCTTTATCTTCACACTGGAGCTAAACAAAGCATAATTCACCGTGATGTGAAGACAACAAACATTCTCTTGGATGAAAACCTTGTGCCGAAAGTTGCTGATTTTGGCATATCAAAAAAGGGTCCTCTTCTTGATAAGAGCCACGTTACAACGCATGTAAAGGGTAGCTTCGGCTATCTTGATCCAGAATATTTTAGGACTAAGTTTCTTACTAAGAAATCAGATGTTTACTCGTTCGGGGTGGTATTGCTTGAAGTTATATGTGGGAAGCCTGCTCTAGATGATGCCCTTCCAACACAGCAGATGAATTTGGCATTGTGGGCATTAAGCTGCAATAAAAAGGGTACTTTTCATGAAATGATGGACCCTTATTTGACTGGCAAAGTGAATATGGAGTCTGTAAACAAGGTTTTAGAGTTGGCTTGGAAGTGCTTGGAGGAGCGTCGGGCGAACAGACCACCAATGGGGTACATATTATGTCAACTAGAAGAGGCTCTCCATCTTGAGTTGGCATCAGATGTTTTGAAAAACAGCAAAAATGGGGATTCTTCTACTTATGGCAGTGTAGGAAATGGATTTATAGATGAAACAGAAGATGTTGTATGA

Protein sequence

>MS.gene34654.t1

MVMLEVAKCTPFVLILLLNLTCQESFASFYPVDNYLVACGSSHSVTFQGRTFVPDIDFEHSNFQIKGEKSLVATSKLNNTLSPLYNSARIFFEKASYTFKIQQHGRHWIRLYFHPLPDSNHNMTFALITVIVDGYVLLDNFTFANYSNSHLMKEYAISVTSDELIVTFIPHGGLLVFVNAIEVVTMPDVLFPDNLNPSTPFTESVLETVYRLNVGGASINAQNDTLSRSWESDETYFRSTITALNISTSVSAIKHPDFLEIAAPPVVYATAKAMGSPSRGYRLNWVFPVRPNLLYFVRVHFCDMISNTTNYMVVDLFMNGNRTKEIRVSGDFVEPYYKDVLFNAIEETLTVSVGPTTMSTIDNATLNGIEIMKFINRVDSVLTKSSERIQRNKKLKLLIIIGCGLSVLTILAFLGLSFSYLKSCRSKKNSVNAYNFLRHFTLHEIKQATNNFHAELLIGAGGFGKVYKGKLENGKRVAIKVANPESRQGLGEFHNEIELLSGLRHSNLVSLVGCCNENSELILVYNYMANGSLSSHLYGKDFVPLSWKQRLGIGIGAAKGLLYLHTGAKQSIIHRDVKTTNILLDENLVPKVADFGISKKGPLLDKSHVTTHVKGSFGYLDPEYFRTKFLTKKSDVYSFGVVLLEVICGKPALDDALPTQQMNLALWALSCNKKGTFHEMMDPYLTGKVNMESVNKVLELAWKCLEERRANRPPMGYILCQLEEALHLELASDVLKNSKNGDSSTYGSVGNGFIDETEDVV