Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34909.t1 | RHN42409.1 | 92.3 | 495 | 23 | 6 | 1 | 483 | 1 | 492 | 1.10E-125 | 460.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34909.t1 | Q93V43 | 78.2 | 101 | 21 | 1 | 31 | 131 | 12 | 111 | 3.1e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34909.t1 | A0A396GMP2 | 92.3 | 495 | 23 | 6 | 1 | 483 | 1 | 492 | 8.0e-126 | 460.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34909.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34909.t1 | MTR_7g015010 | 71.622 | 74 | 21 | 0 | 52 | 125 | 47 | 120 | 1.73e-29 | 119 |
| MS.gene34909.t1 | MTR_4g109660 | 69.863 | 73 | 22 | 0 | 52 | 124 | 46 | 118 | 2.58e-28 | 114 |
| MS.gene34909.t1 | MTR_6g015350 | 72.222 | 72 | 20 | 0 | 52 | 123 | 39 | 110 | 6.78e-28 | 114 |
| MS.gene34909.t1 | MTR_3g026050 | 65.278 | 72 | 25 | 0 | 52 | 123 | 47 | 118 | 5.71e-26 | 109 |
| MS.gene34909.t1 | MTR_4g079580 | 70.588 | 68 | 20 | 0 | 56 | 123 | 16 | 83 | 2.40e-25 | 107 |
| MS.gene34909.t1 | MTR_2g090960 | 72.059 | 68 | 19 | 0 | 56 | 123 | 18 | 85 | 2.62e-25 | 106 |
| MS.gene34909.t1 | MTR_2g078200 | 51.064 | 94 | 43 | 1 | 56 | 146 | 14 | 107 | 1.66e-22 | 97.8 |
| MS.gene34909.t1 | MTR_6g017055 | 37.791 | 172 | 72 | 5 | 56 | 213 | 120 | 270 | 7.36e-21 | 95.1 |
| MS.gene34909.t1 | MTR_4g111935 | 37.888 | 161 | 81 | 6 | 58 | 218 | 128 | 269 | 4.77e-18 | 86.3 |
| MS.gene34909.t1 | MTR_1g103380 | 56.061 | 66 | 29 | 0 | 61 | 126 | 200 | 265 | 3.30e-16 | 81.3 |
| MS.gene34909.t1 | MTR_7g018500 | 59.649 | 57 | 23 | 0 | 64 | 120 | 122 | 178 | 7.50e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34909.t1 | AT4G18390 | 40.685 | 467 | 131 | 19 | 41 | 483 | 21 | 365 | 7.43e-73 | 235 |
| MS.gene34909.t1 | AT4G18390 | 40.685 | 467 | 131 | 19 | 41 | 483 | 21 | 365 | 7.43e-73 | 235 |
| MS.gene34909.t1 | AT1G30210 | 45.385 | 260 | 76 | 8 | 35 | 294 | 25 | 218 | 8.90e-48 | 168 |
| MS.gene34909.t1 | AT1G30210 | 45.385 | 260 | 76 | 8 | 35 | 294 | 25 | 218 | 8.90e-48 | 168 |
| MS.gene34909.t1 | AT3G02150 | 75.000 | 72 | 18 | 0 | 52 | 123 | 64 | 135 | 3.03e-30 | 119 |
| MS.gene34909.t1 | AT3G02150 | 75.000 | 72 | 18 | 0 | 52 | 123 | 64 | 135 | 1.03e-29 | 119 |
| MS.gene34909.t1 | AT5G60970 | 68.056 | 72 | 23 | 0 | 52 | 123 | 53 | 124 | 4.09e-28 | 115 |
| MS.gene34909.t1 | AT5G08070 | 66.667 | 72 | 24 | 0 | 52 | 123 | 23 | 94 | 5.75e-27 | 109 |
| MS.gene34909.t1 | AT5G08070 | 66.667 | 72 | 24 | 0 | 52 | 123 | 23 | 94 | 5.75e-27 | 109 |
| MS.gene34909.t1 | AT2G31070 | 75.385 | 65 | 16 | 0 | 56 | 120 | 23 | 87 | 1.90e-25 | 107 |
| MS.gene34909.t1 | AT1G53230 | 54.639 | 97 | 30 | 2 | 31 | 124 | 29 | 114 | 8.58e-25 | 106 |
| MS.gene34909.t1 | AT1G53230 | 54.639 | 97 | 30 | 2 | 31 | 124 | 29 | 114 | 8.58e-25 | 106 |
| MS.gene34909.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.78e-24 | 104 |
| MS.gene34909.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.78e-24 | 104 |
| MS.gene34909.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.78e-24 | 104 |
| MS.gene34909.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.78e-24 | 104 |
| MS.gene34909.t1 | AT1G67260 | 36.538 | 156 | 80 | 6 | 63 | 212 | 88 | 230 | 1.12e-17 | 84.7 |
| MS.gene34909.t1 | AT1G67260 | 36.538 | 156 | 80 | 6 | 63 | 212 | 88 | 230 | 1.12e-17 | 84.7 |
| MS.gene34909.t1 | AT1G67260 | 36.538 | 156 | 80 | 6 | 63 | 212 | 88 | 230 | 1.57e-17 | 84.3 |
| MS.gene34909.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 3.33e-13 | 72.0 |
| MS.gene34909.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 3.60e-13 | 71.6 |
| MS.gene34909.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 3.60e-13 | 71.6 |
| MS.gene34909.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 4.39e-13 | 71.6 |
Find 78 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGCCTTGCTGGTTATAAT+AGG | 0.198318 | 4.1:+15983530 | MS.gene34909:CDS |
| ATCATTCTTCAAGAATTATA+AGG | 0.232662 | 4.1:+15982516 | MS.gene34909:CDS |
| AATCTTTCTTTGTCTAAATC+TGG | 0.297789 | 4.1:+15982881 | MS.gene34909:CDS |
| CAAAGGGTTTAAGAGATAGA+AGG | 0.305323 | 4.1:+15982588 | MS.gene34909:CDS |
| ATAAGGGTTTCAAGAGCTTC+TGG | 0.308884 | 4.1:+15982533 | MS.gene34909:CDS |
| TGATCTGGTATGAATGAAAA+TGG | 0.312077 | 4.1:-15983424 | None:intergenic |
| GCACATCATCATCATCTATT+AGG | 0.320825 | 4.1:+15983286 | MS.gene34909:CDS |
| ACAATCTCTTCGGGCCTTGC+TGG | 0.321697 | 4.1:+15983520 | MS.gene34909:CDS |
| CTGAATTTCACAATCTCTTC+GGG | 0.336767 | 4.1:+15983511 | MS.gene34909:CDS |
| AACTCTTGGGAATTTATGTT+GGG | 0.338800 | 4.1:-15982396 | None:intergenic |
| CAACTCTTGGGAATTTATGT+TGG | 0.340066 | 4.1:-15982397 | None:intergenic |
| TACTTTAGTCCAATGTTTCC+AGG | 0.350694 | 4.1:+15983247 | MS.gene34909:CDS |
| ATCATTAGAAGAGGTGGAGG+AGG | 0.362000 | 4.1:+15982449 | MS.gene34909:CDS |
| ATGAAAGCACAAATCTTAAC+AGG | 0.378339 | 4.1:+15982477 | MS.gene34909:CDS |
| GGTTCTTCAGCTGACCCTCT+TGG | 0.378386 | 4.1:-15983157 | None:intergenic |
| GGGCCTTGCTGGTTATAATA+GGG | 0.382791 | 4.1:+15983531 | MS.gene34909:CDS |
| AACCATTCAACAGCTTTACT+TGG | 0.387306 | 4.1:-15982677 | None:intergenic |
| AGACAAAAGAGACGGTGAAT+TGG | 0.387420 | 4.1:-15983566 | None:intergenic |
| TCATTCTTCAAGAATTATAA+GGG | 0.401881 | 4.1:+15982517 | MS.gene34909:CDS |
| ATCTTAACAGGTTCAATAGT+TGG | 0.402776 | 4.1:+15982489 | MS.gene34909:CDS |
| TCTGAATTTCACAATCTCTT+CGG | 0.406508 | 4.1:+15983510 | MS.gene34909:CDS |
| CTCAACAACTCATTATTCTC+TGG | 0.418248 | 4.1:+15982740 | MS.gene34909:CDS |
| TGACCCTCTTGGACTATTTG+TGG | 0.423757 | 4.1:-15983146 | None:intergenic |
| TCTGAGACAAGTAAAGGTTC+TGG | 0.423833 | 4.1:+15982917 | MS.gene34909:CDS |
| AAAACTGATGGTGTTGAATC+TGG | 0.424465 | 4.1:-15983738 | None:intergenic |
| GAGATCATTAGAAGAGGTGG+AGG | 0.430301 | 4.1:+15982446 | MS.gene34909:CDS |
| GAGCTTCTGGTGGAAAAGAT+AGG | 0.444208 | 4.1:+15982546 | MS.gene34909:CDS |
| AGAGAGATCATTAGAAGAGG+TGG | 0.446541 | 4.1:+15982443 | MS.gene34909:CDS |
| GCTCTTGATGAAGAAGATCC+TGG | 0.452930 | 4.1:-15983265 | None:intergenic |
| CTCTTTCTCTAGCTTTCACA+CGG | 0.453585 | 4.1:-15982973 | None:intergenic |
| TTCGGTTCATGATGCTGAAA+TGG | 0.457200 | 4.1:+15982823 | MS.gene34909:CDS |
| TGATGATTATTCTCCATTGT+AGG | 0.461933 | 4.1:-15983703 | None:intergenic |
| GAATGAAGCTGTTTGAGAAA+TGG | 0.464042 | 4.1:-15983083 | None:intergenic |
| GTTTAAGAGATAGAAGGGTT+AGG | 0.467094 | 4.1:+15982594 | MS.gene34909:CDS |
| AGTAAAGTAATGACTTCAAA+GGG | 0.486371 | 4.1:+15982572 | MS.gene34909:CDS |
| TTCACTGAACTACTTACTTG+TGG | 0.489069 | 4.1:+15983103 | MS.gene34909:CDS |
| AAGTGAACAAGGTGTTGATT+CGG | 0.495908 | 4.1:+15982805 | MS.gene34909:CDS |
| GAAGAAGATCCTGGAAACAT+TGG | 0.496215 | 4.1:-15983256 | None:intergenic |
| ATTCAACAGCTTTACTTGGT+TGG | 0.503152 | 4.1:-15982673 | None:intergenic |
| ATGGAATTCTTCAGCACCAA+TGG | 0.510387 | 4.1:+15983219 | MS.gene34909:CDS |
| GCTGAAGGTGAAGCTGAAGC+AGG | 0.512953 | 4.1:-15983676 | None:intergenic |
| GAATCAACACCTTGTTCACT+TGG | 0.514307 | 4.1:-15982803 | None:intergenic |
| ACCTTCAGCTGCTCCTACAA+TGG | 0.515548 | 4.1:+15983690 | MS.gene34909:CDS |
| CAGCTCTATTCAGATCAGAA+AGG | 0.516369 | 4.1:+15983787 | MS.gene34909:CDS |
| TAATCATTGTTGTTCCCGCT+TGG | 0.517589 | 4.1:-15983484 | None:intergenic |
| AGCTCTATTCAGATCAGAAA+GGG | 0.521442 | 4.1:+15983788 | MS.gene34909:CDS |
| AAAGGGTTTAAGAGATAGAA+GGG | 0.523321 | 4.1:+15982589 | MS.gene34909:CDS |
| GGACTAAAGTAATGATCCAT+TGG | 0.525062 | 4.1:-15983235 | None:intergenic |
| AATAATGAGTTGTTGAGTGA+AGG | 0.525467 | 4.1:-15982734 | None:intergenic |
| GCTGAAATGGTTGTTGAGAA+TGG | 0.538563 | 4.1:+15982836 | MS.gene34909:CDS |
| TAGTAAAGTAATGACTTCAA+AGG | 0.544163 | 4.1:+15982571 | MS.gene34909:CDS |
| GAAAATGAAGAAGACAATCA+TGG | 0.546258 | 4.1:+15982419 | MS.gene34909:CDS |
| TTCTCACCACTAGTACTGAA+TGG | 0.555766 | 4.1:-15983358 | None:intergenic |
| AACCAAGTAAAGCTGTTGAA+TGG | 0.558567 | 4.1:+15982675 | MS.gene34909:CDS |
| GGCCTTGCTGGTTATAATAG+GGG | 0.569734 | 4.1:+15983532 | MS.gene34909:CDS |
| AATAATCAGCCAAGTGAACA+AGG | 0.578757 | 4.1:+15982794 | MS.gene34909:CDS |
| GTTTCACCATTCAGTACTAG+TGG | 0.581208 | 4.1:+15983352 | MS.gene34909:CDS |
| AGATTGTTGGATCCATCTAA+AGG | 0.583522 | 4.1:-15983613 | None:intergenic |
| AGCACTTCTGAGACAAGTAA+AGG | 0.584944 | 4.1:+15982911 | MS.gene34909:CDS |
| CTTCTTCTACTCAACCAAGC+GGG | 0.586398 | 4.1:+15983470 | MS.gene34909:CDS |
| TGAAAGCTAGAGAAAGAGCA+AGG | 0.588014 | 4.1:+15982978 | MS.gene34909:CDS |
| TATGATCTTCAAGATAGACT+TGG | 0.589871 | 4.1:+15982644 | MS.gene34909:CDS |
| GGAAAGAACTGCTAAAGAGA+AGG | 0.598537 | 4.1:+15983000 | MS.gene34909:CDS |
| GAGACGGTGAATTGGACTGA+AGG | 0.599533 | 4.1:-15983558 | None:intergenic |
| GACAACAGCAGCAGCAACAA+TGG | 0.601712 | 4.1:+15983200 | MS.gene34909:CDS |
| GCATGATTGTGGTATGGAGG+AGG | 0.610814 | 4.1:+15982361 | None:intergenic |
| AGATCATATGATGCAAAATG+TGG | 0.615631 | 4.1:+15983441 | MS.gene34909:CDS |
| GGAAGAGAGATCATTAGAAG+AGG | 0.619686 | 4.1:+15982440 | MS.gene34909:CDS |
| AGGGTTTCAAGAGCTTCTGG+TGG | 0.620264 | 4.1:+15982536 | MS.gene34909:CDS |
| AGACGGTGAATTGGACTGAA+GGG | 0.624249 | 4.1:-15983557 | None:intergenic |
| GCCTTGCTGGTTATAATAGG+GGG | 0.632630 | 4.1:+15983533 | MS.gene34909:CDS |
| TCCATTGTAGGAGCAGCTGA+AGG | 0.640995 | 4.1:-15983691 | None:intergenic |
| GAAAGCTAGAGAAAGAGCAA+GGG | 0.657335 | 4.1:+15982979 | MS.gene34909:CDS |
| TGAAGATGAGACAAAAGAGA+CGG | 0.658703 | 4.1:-15983574 | None:intergenic |
| GATGGTGTTGAATCTGGTGA+TGG | 0.659814 | 4.1:-15983732 | None:intergenic |
| ACTACCACAAATAGTCCAAG+AGG | 0.670044 | 4.1:+15983142 | MS.gene34909:CDS |
| TCTTCTTCTACTCAACCAAG+CGG | 0.675315 | 4.1:+15983469 | MS.gene34909:CDS |
| CTACCACAAATAGTCCAAGA+GGG | 0.751118 | 4.1:+15983143 | MS.gene34909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTCTTCAAGAATTATA+AGG | + | chr4.1:15982516-15982535 | MS.gene34909:CDS | 20.0% |
| !! | TCATTCTTCAAGAATTATAA+GGG | + | chr4.1:15982517-15982536 | MS.gene34909:CDS | 20.0% |
| ! | AATCTTTCTTTGTCTAAATC+TGG | + | chr4.1:15982881-15982900 | MS.gene34909:CDS | 25.0% |
| ! | AGTAAAGTAATGACTTCAAA+GGG | + | chr4.1:15982572-15982591 | MS.gene34909:CDS | 25.0% |
| ! | TAGTAAAGTAATGACTTCAA+AGG | + | chr4.1:15982571-15982590 | MS.gene34909:CDS | 25.0% |
| !!! | AACAATCTACCTTTTTTCAT+GGG | + | chr4.1:15983628-15983647 | MS.gene34909:CDS | 25.0% |
| AAAGGGTTTAAGAGATAGAA+GGG | + | chr4.1:15982589-15982608 | MS.gene34909:CDS | 30.0% | |
| AACTCTTGGGAATTTATGTT+GGG | - | chr4.1:15982399-15982418 | None:intergenic | 30.0% | |
| AATAATGAGTTGTTGAGTGA+AGG | - | chr4.1:15982737-15982756 | None:intergenic | 30.0% | |
| AGATCATATGATGCAAAATG+TGG | + | chr4.1:15983441-15983460 | MS.gene34909:CDS | 30.0% | |
| ATCTTAACAGGTTCAATAGT+TGG | + | chr4.1:15982489-15982508 | MS.gene34909:CDS | 30.0% | |
| CAAAAACAGATGAAAACTGA+TGG | - | chr4.1:15983753-15983772 | None:intergenic | 30.0% | |
| CATGAAAAAAGGTAGATTGT+TGG | - | chr4.1:15983629-15983648 | None:intergenic | 30.0% | |
| GAAAATGAAGAAGACAATCA+TGG | + | chr4.1:15982419-15982438 | MS.gene34909:CDS | 30.0% | |
| TATGATCTTCAAGATAGACT+TGG | + | chr4.1:15982644-15982663 | MS.gene34909:CDS | 30.0% | |
| TCTGAATTTCACAATCTCTT+CGG | + | chr4.1:15983510-15983529 | MS.gene34909:CDS | 30.0% | |
| TGATCTGGTATGAATGAAAA+TGG | - | chr4.1:15983427-15983446 | None:intergenic | 30.0% | |
| TGATGATTATTCTCCATTGT+AGG | - | chr4.1:15983706-15983725 | None:intergenic | 30.0% | |
| ! | ACATTTTGCATCATATGATC+TGG | - | chr4.1:15983442-15983461 | None:intergenic | 30.0% |
| ! | ATGAAAGCACAAATCTTAAC+AGG | + | chr4.1:15982477-15982496 | MS.gene34909:CDS | 30.0% |
| ! | CTTCTTCATTTTCAACTCTT+GGG | - | chr4.1:15982412-15982431 | None:intergenic | 30.0% |
| ! | TCTTCTTCATTTTCAACTCT+TGG | - | chr4.1:15982413-15982432 | None:intergenic | 30.0% |
| ! | TTTTCAGTTTCACCTTTAGA+TGG | + | chr4.1:15983601-15983620 | MS.gene34909:CDS | 30.0% |
| !! | CTAGCTTTGTTAAAAAAGCT+AGG | - | chr4.1:15983181-15983200 | None:intergenic | 30.0% |
| !!! | CAACAATCTACCTTTTTTCA+TGG | + | chr4.1:15983627-15983646 | MS.gene34909:CDS | 30.0% |
| !!! | CAGTTTTCATCTGTTTTTGA+TGG | + | chr4.1:15983754-15983773 | MS.gene34909:CDS | 30.0% |
| AACCAAGTAAAGCTGTTGAA+TGG | + | chr4.1:15982675-15982694 | MS.gene34909:CDS | 35.0% | |
| AACCATTCAACAGCTTTACT+TGG | - | chr4.1:15982680-15982699 | None:intergenic | 35.0% | |
| AATAATCAGCCAAGTGAACA+AGG | + | chr4.1:15982794-15982813 | MS.gene34909:CDS | 35.0% | |
| AGATTGTTGGATCCATCTAA+AGG | - | chr4.1:15983616-15983635 | None:intergenic | 35.0% | |
| AGCTCTATTCAGATCAGAAA+GGG | + | chr4.1:15983788-15983807 | MS.gene34909:CDS | 35.0% | |
| ATTCAACAGCTTTACTTGGT+TGG | - | chr4.1:15982676-15982695 | None:intergenic | 35.0% | |
| CAAAGGGTTTAAGAGATAGA+AGG | + | chr4.1:15982588-15982607 | MS.gene34909:CDS | 35.0% | |
| CAACTCTTGGGAATTTATGT+TGG | - | chr4.1:15982400-15982419 | None:intergenic | 35.0% | |
| CTCAACAACTCATTATTCTC+TGG | + | chr4.1:15982740-15982759 | MS.gene34909:CDS | 35.0% | |
| CTGAATTTCACAATCTCTTC+GGG | + | chr4.1:15983511-15983530 | MS.gene34909:CDS | 35.0% | |
| GAATGAAGCTGTTTGAGAAA+TGG | - | chr4.1:15983086-15983105 | None:intergenic | 35.0% | |
| GCACATCATCATCATCTATT+AGG | + | chr4.1:15983286-15983305 | MS.gene34909:CDS | 35.0% | |
| GGACTAAAGTAATGATCCAT+TGG | - | chr4.1:15983238-15983257 | None:intergenic | 35.0% | |
| GTTTAAGAGATAGAAGGGTT+AGG | + | chr4.1:15982594-15982613 | MS.gene34909:CDS | 35.0% | |
| TACTTTAGTCCAATGTTTCC+AGG | + | chr4.1:15983247-15983266 | MS.gene34909:CDS | 35.0% | |
| TGAAGATGAGACAAAAGAGA+CGG | - | chr4.1:15983577-15983596 | None:intergenic | 35.0% | |
| TTCACTGAACTACTTACTTG+TGG | + | chr4.1:15983103-15983122 | MS.gene34909:CDS | 35.0% | |
| ! | AAAACTGATGGTGTTGAATC+TGG | - | chr4.1:15983741-15983760 | None:intergenic | 35.0% |
| ! | CTCTTTTGTCTCATCTTCAA+AGG | + | chr4.1:15983578-15983597 | MS.gene34909:CDS | 35.0% |
| !! | AAGTGAACAAGGTGTTGATT+CGG | + | chr4.1:15982805-15982824 | MS.gene34909:CDS | 35.0% |
| !!! | AATCTACCTTTTTTCATGGG+AGG | + | chr4.1:15983631-15983650 | MS.gene34909:CDS | 35.0% |
| ACTACCACAAATAGTCCAAG+AGG | + | chr4.1:15983142-15983161 | MS.gene34909:CDS | 40.0% | |
| AGACAAAAGAGACGGTGAAT+TGG | - | chr4.1:15983569-15983588 | None:intergenic | 40.0% | |
| AGAGAGATCATTAGAAGAGG+TGG | + | chr4.1:15982443-15982462 | MS.gene34909:CDS | 40.0% | |
| ATAAGGGTTTCAAGAGCTTC+TGG | + | chr4.1:15982533-15982552 | MS.gene34909:CDS | 40.0% | |
| ATGGAATTCTTCAGCACCAA+TGG | + | chr4.1:15983219-15983238 | MS.gene34909:CDS | 40.0% | |
| CAGCTCTATTCAGATCAGAA+AGG | + | chr4.1:15983787-15983806 | MS.gene34909:CDS | 40.0% | |
| CTACCACAAATAGTCCAAGA+GGG | + | chr4.1:15983143-15983162 | MS.gene34909:CDS | 40.0% | |
| GAAAGCTAGAGAAAGAGCAA+GGG | + | chr4.1:15982979-15982998 | MS.gene34909:CDS | 40.0% | |
| GAAGAAGATCCTGGAAACAT+TGG | - | chr4.1:15983259-15983278 | None:intergenic | 40.0% | |
| GAATCAACACCTTGTTCACT+TGG | - | chr4.1:15982806-15982825 | None:intergenic | 40.0% | |
| GCTGAAATGGTTGTTGAGAA+TGG | + | chr4.1:15982836-15982855 | MS.gene34909:CDS | 40.0% | |
| GGAAAGAACTGCTAAAGAGA+AGG | + | chr4.1:15983000-15983019 | MS.gene34909:CDS | 40.0% | |
| GGAAGAGAGATCATTAGAAG+AGG | + | chr4.1:15982440-15982459 | MS.gene34909:CDS | 40.0% | |
| GTTTCACCATTCAGTACTAG+TGG | + | chr4.1:15983352-15983371 | MS.gene34909:CDS | 40.0% | |
| TCTTCTTCTACTCAACCAAG+CGG | + | chr4.1:15983469-15983488 | MS.gene34909:CDS | 40.0% | |
| TGAAAGCTAGAGAAAGAGCA+AGG | + | chr4.1:15982978-15982997 | MS.gene34909:CDS | 40.0% | |
| TTCGGTTCATGATGCTGAAA+TGG | + | chr4.1:15982823-15982842 | MS.gene34909:CDS | 40.0% | |
| ! | TAATCATTGTTGTTCCCGCT+TGG | - | chr4.1:15983487-15983506 | None:intergenic | 40.0% |
| ! | TCTGAGACAAGTAAAGGTTC+TGG | + | chr4.1:15982917-15982936 | MS.gene34909:CDS | 40.0% |
| ! | TTCTCACCACTAGTACTGAA+TGG | - | chr4.1:15983361-15983380 | None:intergenic | 40.0% |
| !! | AGCACTTCTGAGACAAGTAA+AGG | + | chr4.1:15982911-15982930 | MS.gene34909:CDS | 40.0% |
| !! | CTCTTTCTCTAGCTTTCACA+CGG | - | chr4.1:15982976-15982995 | None:intergenic | 40.0% |
| AGACGGTGAATTGGACTGAA+GGG | - | chr4.1:15983560-15983579 | None:intergenic | 45.0% | |
| ATCATTAGAAGAGGTGGAGG+AGG | + | chr4.1:15982449-15982468 | MS.gene34909:CDS | 45.0% | |
| CTTCTTCTACTCAACCAAGC+GGG | + | chr4.1:15983470-15983489 | MS.gene34909:CDS | 45.0% | |
| GAGATCATTAGAAGAGGTGG+AGG | + | chr4.1:15982446-15982465 | MS.gene34909:CDS | 45.0% | |
| GAGCTTCTGGTGGAAAAGAT+AGG | + | chr4.1:15982546-15982565 | MS.gene34909:CDS | 45.0% | |
| GCTCTTGATGAAGAAGATCC+TGG | - | chr4.1:15983268-15983287 | None:intergenic | 45.0% | |
| TCCCCCTATTATAACCAGCA+AGG | - | chr4.1:15983537-15983556 | None:intergenic | 45.0% | |
| TGACCCTCTTGGACTATTTG+TGG | - | chr4.1:15983149-15983168 | None:intergenic | 45.0% | |
| ! | GATGGTGTTGAATCTGGTGA+TGG | - | chr4.1:15983735-15983754 | None:intergenic | 45.0% |
| ! | GCCTTGCTGGTTATAATAGG+GGG | + | chr4.1:15983533-15983552 | MS.gene34909:CDS | 45.0% |
| ! | GGCCTTGCTGGTTATAATAG+GGG | + | chr4.1:15983532-15983551 | MS.gene34909:CDS | 45.0% |
| ! | GGGCCTTGCTGGTTATAATA+GGG | + | chr4.1:15983531-15983550 | MS.gene34909:CDS | 45.0% |
| !!! | CTACCTTTTTTCATGGGAGG+AGG | + | chr4.1:15983634-15983653 | MS.gene34909:CDS | 45.0% |
| !! | TTATTATTATTATTATTACT+AGG | - | chr4.1:15982773-15982792 | None:intergenic | 5.0% |
| ACCTTCAGCTGCTCCTACAA+TGG | + | chr4.1:15983690-15983709 | MS.gene34909:CDS | 50.0% | |
| AGGGTTTCAAGAGCTTCTGG+TGG | + | chr4.1:15982536-15982555 | MS.gene34909:CDS | 50.0% | |
| GACAACAGCAGCAGCAACAA+TGG | + | chr4.1:15983200-15983219 | MS.gene34909:CDS | 50.0% | |
| GAGACGGTGAATTGGACTGA+AGG | - | chr4.1:15983561-15983580 | None:intergenic | 50.0% | |
| GCACCTCCTCCCATGAAAAA+AGG | - | chr4.1:15983640-15983659 | None:intergenic | 50.0% | |
| TCCATTGTAGGAGCAGCTGA+AGG | - | chr4.1:15983694-15983713 | None:intergenic | 50.0% | |
| ! | CGGGCCTTGCTGGTTATAAT+AGG | + | chr4.1:15983530-15983549 | MS.gene34909:CDS | 50.0% |
| ACAATCTCTTCGGGCCTTGC+TGG | + | chr4.1:15983520-15983539 | MS.gene34909:CDS | 55.0% | |
| GCTGAAGGTGAAGCTGAAGC+AGG | - | chr4.1:15983679-15983698 | None:intergenic | 55.0% | |
| GGTTCTTCAGCTGACCCTCT+TGG | - | chr4.1:15983160-15983179 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 15982374 | 15983825 | 15982374 | ID=MS.gene34909 |
| chr4.1 | mRNA | 15982374 | 15983825 | 15982374 | ID=MS.gene34909.t1;Parent=MS.gene34909 |
| chr4.1 | exon | 15982374 | 15983825 | 15982374 | ID=MS.gene34909.t1.exon1;Parent=MS.gene34909.t1 |
| chr4.1 | CDS | 15982374 | 15983825 | 15982374 | ID=cds.MS.gene34909.t1;Parent=MS.gene34909.t1 |
| Gene Sequence |
| Protein sequence |
