AlfalfaGEDB | MS.gene34949

M. sativa cultivar XinJiangDaYe / MS.gene34949

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34949.t1	RHN42358.1	98.2	217	4	0	1	217	1	217	3.90E-115	424.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34949.t1	Q39263	46.2	182	68	7	62	217	83	260	5.7e-30	132.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34949.t1	A0A396GPM5	98.2	217	4	0	1	217	1	217	2.8e-115	424.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene34949.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34949.t1	MTR_1g033340	51.765	255	80	8	1	217	2	251	4.07e-78	235
MS.gene34949.t1	MTR_3g065020	48.000	200	93	6	21	217	47	238	1.10e-56	180
MS.gene34949.t1	MTR_5g077370	45.588	204	92	6	23	217	44	237	6.76e-50	162
MS.gene34949.t1	MTR_2g104900	45.333	150	63	6	2	133	10	158	5.72e-30	111
MS.gene34949.t1	MTR_1g107055	45.763	118	58	3	62	179	64	175	7.46e-25	97.1
MS.gene34949.t1	MTR_1g013130	40.278	144	60	4	15	132	37	180	3.49e-24	96.7
MS.gene34949.t1	MTR_4g006575	40.876	137	63	4	2	132	6	130	2.16e-23	94.0
MS.gene34949.t1	MTR_4g006600	40.876	137	63	4	2	132	6	130	2.16e-23	94.0
MS.gene34949.t1	MTR_3g106230	50.562	89	26	4	61	132	71	158	1.08e-19	84.3
MS.gene34949.t1	MTR_4g128340	62.295	61	21	1	59	119	42	100	5.50e-18	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34949.t1	AT1G66140	46.524	187	70	7	57	217	78	260	1.78e-44	149
MS.gene34949.t1	AT1G24625	45.029	171	67	7	59	217	54	209	3.69e-33	119
MS.gene34949.t1	AT1G80730	42.484	153	66	4	2	132	1	153	1.06e-25	100
MS.gene34949.t1	AT5G25160	46.226	106	49	3	32	132	32	134	1.13e-22	92.4
MS.gene34949.t1	AT5G10970	42.105	133	67	6	9	132	44	175	2.56e-22	92.0
MS.gene34949.t1	AT5G57520	76.923	39	9	0	61	99	49	87	1.12e-16	74.3
MS.gene34949.t1	AT5G14010	72.222	36	10	0	62	97	36	71	3.73e-13	65.1
MS.gene34949.t1	AT5G01860	57.500	40	17	0	62	101	65	104	2.31e-11	61.2
MS.gene34949.t1	AT5G27880	44.928	69	36	1	33	99	47	115	7.86e-11	60.5

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Find 56 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGAATTTGAAGTTTG+AGG	0.449808	4.4:-17658047	None:intergenic
AAATTTGATAGAAACCATTT+TGG	0.216847	4.4:+17657930	MS.gene34949:CDS
AATATCCTTGGAGTTACCGA+TGG	0.642699	4.4:-17657648	None:intergenic
ACTCAATTTCAGTTCGAGTG+AGG	0.611871	4.4:+17657563	MS.gene34949:CDS
AGAACGCTCACAAAAGGGAG+AGG	0.635123	4.4:+17657727	MS.gene34949:CDS
AGAATGAGCTTCAACACCAA+GGG	0.655962	4.4:-17657841	None:intergenic
AGTGATGCTAGTAGTGAAGT+AGG	0.485652	4.4:+17657603	MS.gene34949:CDS
AGTGTCAAGTCAAGGGTCAT+AGG	0.518887	4.4:-17657543	None:intergenic
ATATCCTCAAACTTCAAATT+CGG	0.284335	4.4:+17658043	MS.gene34949:CDS
ATCACTTGAACCCATTAACT+CGG	0.613671	4.4:-17657586	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCCTCAAACTTCAAATTC+GGG	+	chr4.4:17658044-17658063	MS.gene34949:CDS	30.0%
ATCACTTGAACCCATTAACT+CGG	-	chr4.4:17657589-17657608	None:intergenic	35.0%
CTATATTAACACTTCCTCCT+TGG	-	chr4.4:17658022-17658041	None:intergenic	35.0%
GAAATTGAGTGTCAAGTCAA+GGG	-	chr4.4:17657553-17657572	None:intergenic	35.0%
TATAGCTTCAGTGTAAGATC+AGG	-	chr4.4:17658113-17658132	None:intergenic	35.0%
TCTCTTGTAATTACTGCAAG+AGG	+	chr4.4:17657670-17657689	MS.gene34949:CDS	35.0%
TGAAATTGAGTGTCAAGTCA+AGG	-	chr4.4:17657554-17657573	None:intergenic	35.0%
AATATCCTTGGAGTTACCGA+TGG	-	chr4.4:17657651-17657670	None:intergenic	40.0%
ACTCAATTTCAGTTCGAGTG+AGG	+	chr4.4:17657563-17657582	MS.gene34949:CDS	40.0%
AGAATGAGCTTCAACACCAA+GGG	-	chr4.4:17657844-17657863	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	17657480	17658133	17657480	ID=MS.gene34949
chr4.4	mRNA	17657480	17658133	17657480	ID=MS.gene34949.t1;Parent=MS.gene34949
chr4.4	exon	17657480	17658133	17657480	ID=MS.gene34949.t1.exon1;Parent=MS.gene34949.t1
chr4.4	CDS	17657480	17658133	17657480	ID=cds.MS.gene34949.t1;Parent=MS.gene34949.t1

Gene Sequence

>MS.gene34949

ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCAGTCAGAAGCACCCCAAGATCTAGATCCTATGACCCTTGACTTGACACTCAATTTCAGTTCGAGTGAGGCCGAGTTAATGGGTTCAAGTGATGCTAGTAGTGAAGTAGGAGCTGCTGAAGTTCATGCTTCGCCATCGGTAACTCCAAGGATATTCTCTTGTAATTACTGCAAGAGGAAGTTCTATAGCTCGCAAGCATTAGGCGGTCATCAGAACGCTCACAAAAGGGAGAGGACGATGGCTAAACGTGCAATGCGAATGGGAATGTTCACCGAAAGGTATACAAGCCTTGCATCTCTACCTCTTCATGGTTCGCCTTTTCGGTCCCTTGGTGTTGAAGCTCATTCTGCAATGCATCAAAGACATATGCAACCATCGTCAACAATGAGGGCTCCAGATATGAGAGCTGCTGCGAAATTTGATAGAAACCATTTTGGATCGCTAGTTTTCGTGGAAGATGATGATGTAGGTAGCTTTTGGCCCGGAAGTTTTAGACAGGTGGACCAAGGAGGAAGTGTTAATATAGGATATCCTCAAACTTCAAATTCGGGTTTTGTTCCAATGGCACCTCCTCCACCTCAAGCATCTGCATCTCCTGATCTTACACTGAAGCTATAA

Protein sequence

>MS.gene34949.t1

MMTPNLNLEPENQSEAPQDLDPMTLDLTLNFSSSEAELMGSSDASSEVGAAEVHASPSVTPRIFSCNYCKRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGVEAHSAMHQRHMQPSSTMRAPDMRAAAKFDRNHFGSLVFVEDDDVGSFWPGSFRQVDQGGSVNIGYPQTSNSGFVPMAPPPPQASASPDLTLKL