Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34978.t1 | AFK41866.1 | 97.1 | 280 | 8 | 0 | 1 | 280 | 1 | 280 | 2.40E-157 | 564.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34978.t1 | Q9SKD0 | 54.2 | 297 | 105 | 10 | 1 | 280 | 1 | 283 | 7.8e-72 | 271.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34978.t1 | I3TAB3 | 97.1 | 280 | 8 | 0 | 1 | 280 | 1 | 280 | 1.7e-157 | 564.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34978.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34978.t1 | MTR_2g035730 | 69.919 | 123 | 8 | 2 | 27 | 149 | 1 | 94 | 2.69e-48 | 155 |
| MS.gene34978.t1 | MTR_1g023660 | 56.604 | 106 | 46 | 0 | 175 | 280 | 235 | 340 | 2.36e-42 | 148 |
| MS.gene34978.t1 | MTR_8g099780 | 53.846 | 104 | 48 | 0 | 177 | 280 | 209 | 312 | 3.07e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34978.t1 | AT2G01930 | 54.882 | 297 | 103 | 10 | 1 | 280 | 1 | 283 | 7.70e-97 | 286 |
| MS.gene34978.t1 | AT2G01930 | 54.882 | 297 | 103 | 10 | 1 | 280 | 1 | 283 | 7.70e-97 | 286 |
| MS.gene34978.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 2.23e-89 | 267 |
| MS.gene34978.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 2.23e-89 | 267 |
| MS.gene34978.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 2.23e-89 | 267 |
| MS.gene34978.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 2.23e-89 | 267 |
| MS.gene34978.t1 | AT1G68120 | 47.079 | 291 | 121 | 9 | 1 | 280 | 1 | 269 | 1.49e-74 | 229 |
| MS.gene34978.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 8.99e-50 | 164 |
| MS.gene34978.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 8.99e-50 | 164 |
| MS.gene34978.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 8.99e-50 | 164 |
| MS.gene34978.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 105 | 271 | 1.59e-49 | 165 |
| MS.gene34978.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 178 | 282 | 1.12e-39 | 140 |
| MS.gene34978.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 234 | 338 | 2.58e-39 | 140 |
| MS.gene34978.t1 | AT2G21240 | 52.885 | 104 | 49 | 0 | 177 | 280 | 193 | 296 | 3.30e-39 | 139 |
| MS.gene34978.t1 | AT2G21240 | 52.885 | 104 | 49 | 0 | 177 | 280 | 193 | 296 | 3.30e-39 | 139 |
| MS.gene34978.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 238 | 342 | 3.36e-39 | 140 |
| MS.gene34978.t1 | AT4G38910 | 51.485 | 101 | 49 | 0 | 180 | 280 | 158 | 258 | 4.73e-38 | 135 |
| MS.gene34978.t1 | AT4G38910 | 51.485 | 101 | 49 | 0 | 180 | 280 | 183 | 283 | 7.52e-38 | 135 |
Find 84 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGGCTTCCTGGGCTTCT+TGG | 0.176884 | 4.4:+18019465 | None:intergenic |
| GCTATCATCCTTCGGCTTCC+TGG | 0.179821 | 4.4:+18019456 | None:intergenic |
| TCTGGAAGAACAGCATAATT+TGG | 0.201472 | 4.4:+18019637 | None:intergenic |
| GGAATTGAAATGGACATTTC+TGG | 0.204966 | 4.4:-18019376 | MS.gene34978:CDS |
| TTCCTGGGCTTCTTGGCTTT+TGG | 0.290426 | 4.4:+18019472 | None:intergenic |
| GCCACGAGATTGTGCTGTTT+CGG | 0.312141 | 4.4:-18019740 | MS.gene34978:CDS |
| AGCAAAGAAAAGGAAGTCTA+AGG | 0.341641 | 4.4:-18019509 | MS.gene34978:CDS |
| CTTTGCCGATGAGCATAAAA+AGG | 0.358237 | 4.4:-18019246 | MS.gene34978:CDS |
| TTAACTATGTGAGGGATAAC+TGG | 0.365336 | 4.4:-18019702 | MS.gene34978:CDS |
| TTCTCATTTCTTGATGCATC+AGG | 0.374898 | 4.4:+18019577 | None:intergenic |
| GAGAGTGATTGTGATGCTTC+TGG | 0.377872 | 4.4:+18019619 | None:intergenic |
| ATCACAATCACTCTCCTTGC+CGG | 0.381788 | 4.4:-18019611 | MS.gene34978:CDS |
| ATCGCTGGGGCGTTGGAGGC+TGG | 0.384018 | 4.4:-18019306 | MS.gene34978:CDS |
| TGAAATCAATGGAATTGAAA+TGG | 0.399496 | 4.4:-18019386 | MS.gene34978:CDS |
| AGGCGTGGTGCAAGGATAGC+TGG | 0.400781 | 4.4:-18019226 | MS.gene34978:CDS |
| TGTTATCGCTGGGGCGTTGG+AGG | 0.403737 | 4.4:-18019310 | MS.gene34978:CDS |
| GCATCAGGATGCGGTATAAC+CGG | 0.404299 | 4.4:+18019592 | None:intergenic |
| GCTATGATTGGAAGTGCAAA+TGG | 0.413501 | 4.4:-18019778 | MS.gene34978:CDS |
| CTATTGATCTGAAGACTCAT+TGG | 0.414033 | 4.4:-18019129 | MS.gene34978:CDS |
| TCCTCAGCAGTGTTATCGCT+GGG | 0.415958 | 4.4:-18019320 | MS.gene34978:CDS |
| CTATCATCCTTCGGCTTCCT+GGG | 0.424580 | 4.4:+18019457 | None:intergenic |
| TCAAGTGCCAAAGTCTTCTT+CGG | 0.439736 | 4.4:+18019406 | None:intergenic |
| GTTCCAGTTTGTTCTTGCAC+TGG | 0.441790 | 4.4:-18019346 | MS.gene34978:CDS |
| TTCCAGTTTGTTCTTGCACT+GGG | 0.445134 | 4.4:-18019345 | MS.gene34978:CDS |
| TTCCCAGTGCAAGAACAAAC+TGG | 0.448442 | 4.4:+18019343 | None:intergenic |
| TATTGATAAACCTATGTCTC+GGG | 0.452192 | 4.4:+18019674 | None:intergenic |
| ATCTCGTGGCTGAAAGGGTA+GGG | 0.458243 | 4.4:+18019753 | None:intergenic |
| CAGTGTTATCGCTGGGGCGT+TGG | 0.461534 | 4.4:-18019313 | MS.gene34978:CDS |
| TCTGATAGTGACAAACTTGT+TGG | 0.463051 | 4.4:+18019093 | None:intergenic |
| GGGTTCATAGTAACCCCAAT+TGG | 0.466238 | 4.4:+18019885 | None:intergenic |
| ATCCTCAGCAGTGTTATCGC+TGG | 0.466509 | 4.4:-18019321 | MS.gene34978:CDS |
| TGAAGAATTGAGTGTTAAGA+AGG | 0.467743 | 4.4:-18019542 | MS.gene34978:CDS |
| ATGTGCTGAATATGCCCAAT+TGG | 0.468228 | 4.4:-18019900 | MS.gene34978:CDS |
| CTCCAAAAGCCAAGAAGCCC+AGG | 0.474778 | 4.4:-18019474 | MS.gene34978:CDS |
| GTTACTATGAACCCTTCAAA+GGG | 0.480237 | 4.4:-18019876 | MS.gene34978:CDS |
| GGTCGTGATCCAGCTATGAT+TGG | 0.485066 | 4.4:-18019790 | MS.gene34978:CDS |
| AGGATAAATTGACACATTTG+TGG | 0.492724 | 4.4:+18019267 | None:intergenic |
| TTTGCACTTCCAATCATAGC+TGG | 0.492950 | 4.4:+18019781 | None:intergenic |
| GTGCAAGAACAAACTGGAAC+TGG | 0.493288 | 4.4:+18019349 | None:intergenic |
| AGCACAATCTCGTGGCTGAA+AGG | 0.495049 | 4.4:+18019747 | None:intergenic |
| TTATCCCTCACATAGTTAAA+CGG | 0.497017 | 4.4:+18019706 | None:intergenic |
| GGTTACTATGAACCCTTCAA+AGG | 0.497230 | 4.4:-18019877 | MS.gene34978:CDS |
| ACTTTGGCACTTGAAATCAA+TGG | 0.500357 | 4.4:-18019397 | MS.gene34978:CDS |
| CTGGGAGGAAAATGAGCAAA+GGG | 0.510464 | 4.4:-18019207 | MS.gene34978:CDS |
| GTTTCACGATCATTCATGGC+AGG | 0.511266 | 4.4:+18019829 | None:intergenic |
| GGTTCATAGTAACCCCAATT+GGG | 0.512276 | 4.4:+18019886 | None:intergenic |
| GAAACACTGCTATCATCCTT+CGG | 0.515134 | 4.4:+18019448 | None:intergenic |
| TGTGCTGAATATGCCCAATT+GGG | 0.516384 | 4.4:-18019899 | MS.gene34978:CDS |
| TATTGATCTGAAGACTCATT+GGG | 0.517362 | 4.4:-18019128 | MS.gene34978:CDS |
| TTTCTTGATGCATCAGGATG+CGG | 0.521747 | 4.4:+18019583 | None:intergenic |
| AAGGTGGCAAAGCAAAGAAA+AGG | 0.522042 | 4.4:-18019519 | MS.gene34978:CDS |
| ATATTGATAAACCTATGTCT+CGG | 0.524517 | 4.4:+18019673 | None:intergenic |
| GAATTGAGTGTTAAGAAGGA+AGG | 0.526010 | 4.4:-18019538 | MS.gene34978:CDS |
| GGCGTGGTGCAAGGATAGCT+GGG | 0.537643 | 4.4:-18019225 | MS.gene34978:CDS |
| GCACAATCTCGTGGCTGAAA+GGG | 0.539826 | 4.4:+18019748 | None:intergenic |
| GAAACCACCGAAGAAGACTT+TGG | 0.547799 | 4.4:-18019413 | MS.gene34978:CDS |
| ACTGGATGACCCCGAGACAT+AGG | 0.551501 | 4.4:-18019684 | MS.gene34978:CDS |
| CAAGAAGCCCAGGAAGCCGA+AGG | 0.555978 | 4.4:-18019464 | MS.gene34978:CDS |
| AATCTCGTGGCTGAAAGGGT+AGG | 0.561235 | 4.4:+18019752 | None:intergenic |
| TTGAGTGTTAAGAAGGAAGG+TGG | 0.573084 | 4.4:-18019535 | MS.gene34978:CDS |
| TACTATGAACCCTTCAAAGG+GGG | 0.578585 | 4.4:-18019874 | MS.gene34978:CDS |
| CTATGATTGGAAGTGCAAAT+GGG | 0.579589 | 4.4:-18019777 | MS.gene34978:CDS |
| CTACTCCGTTTAACTATGTG+AGG | 0.583386 | 4.4:-18019711 | MS.gene34978:CDS |
| GCAAAGAAAAGGAAGTCTAA+GGG | 0.589646 | 4.4:-18019508 | MS.gene34978:CDS |
| AGTGCCAAAGTCTTCTTCGG+TGG | 0.589946 | 4.4:+18019409 | None:intergenic |
| ATCATAGCTGGATCACGACC+AGG | 0.593440 | 4.4:+18019793 | None:intergenic |
| GATAGCAGTGTTTCAGCTCA+AGG | 0.596315 | 4.4:-18019439 | MS.gene34978:CDS |
| ATTCAGCACATCATCATCCA+TGG | 0.603078 | 4.4:+18019912 | None:intergenic |
| AAGACTCATTGGGCTAGACA+TGG | 0.622877 | 4.4:-18019118 | MS.gene34978:CDS |
| TCTCGTGGCTGAAAGGGTAG+GGG | 0.624941 | 4.4:+18019754 | None:intergenic |
| TGCATCAAGAAATGAGAATG+TGG | 0.643643 | 4.4:-18019572 | MS.gene34978:CDS |
| TCCGAAACAGCACAATCTCG+TGG | 0.644189 | 4.4:+18019739 | None:intergenic |
| TACTCCGTTTAACTATGTGA+GGG | 0.653092 | 4.4:-18019710 | MS.gene34978:CDS |
| GCTGGGAGGAAAATGAGCAA+AGG | 0.653288 | 4.4:-18019208 | MS.gene34978:CDS |
| AGGATGCGGTATAACCGGCA+AGG | 0.654546 | 4.4:+18019597 | None:intergenic |
| GATCATTCATGGCAGGCATG+AGG | 0.655695 | 4.4:+18019836 | None:intergenic |
| ATTGATAAACCTATGTCTCG+GGG | 0.666123 | 4.4:+18019675 | None:intergenic |
| CCCCAGCGATAACACTGCTG+AGG | 0.669056 | 4.4:+18019319 | None:intergenic |
| ACTATGAACCCTTCAAAGGG+GGG | 0.673810 | 4.4:-18019873 | MS.gene34978:CDS |
| CCTCAGCAGTGTTATCGCTG+GGG | 0.675510 | 4.4:-18019319 | MS.gene34978:CDS |
| GTGCTGAATATGCCCAATTG+GGG | 0.693408 | 4.4:-18019898 | MS.gene34978:CDS |
| TTACTATGAACCCTTCAAAG+GGG | 0.698365 | 4.4:-18019875 | MS.gene34978:CDS |
| TGGGAGGAAAATGAGCAAAG+GGG | 0.723468 | 4.4:-18019206 | MS.gene34978:CDS |
| GTGGTGCAAGGATAGCTGGG+AGG | 0.770772 | 4.4:-18019222 | MS.gene34978:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATTGATAAACCTATGTCT+CGG | + | chr4.4:18019330-18019349 | None:intergenic | 25.0% |
| ! | TGAAATCAATGGAATTGAAA+TGG | - | chr4.4:18019614-18019633 | MS.gene34978:CDS | 25.0% |
| AGGATAAATTGACACATTTG+TGG | + | chr4.4:18019736-18019755 | None:intergenic | 30.0% | |
| TATTGATAAACCTATGTCTC+GGG | + | chr4.4:18019329-18019348 | None:intergenic | 30.0% | |
| TATTGATCTGAAGACTCATT+GGG | - | chr4.4:18019872-18019891 | MS.gene34978:CDS | 30.0% | |
| TGAAGAATTGAGTGTTAAGA+AGG | - | chr4.4:18019458-18019477 | MS.gene34978:CDS | 30.0% | |
| TTATCCCTCACATAGTTAAA+CGG | + | chr4.4:18019297-18019316 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCACGATCATTCA+TGG | + | chr4.4:18019178-18019197 | None:intergenic | 30.0% |
| !!! | GAAACAAAACCATTTTTTCC+TGG | - | chr4.4:18019189-18019208 | MS.gene34978:CDS | 30.0% |
| ACTTTGGCACTTGAAATCAA+TGG | - | chr4.4:18019603-18019622 | MS.gene34978:CDS | 35.0% | |
| AGCAAAGAAAAGGAAGTCTA+AGG | - | chr4.4:18019491-18019510 | MS.gene34978:CDS | 35.0% | |
| ATTGATAAACCTATGTCTCG+GGG | + | chr4.4:18019328-18019347 | None:intergenic | 35.0% | |
| CTATTGATCTGAAGACTCAT+TGG | - | chr4.4:18019871-18019890 | MS.gene34978:CDS | 35.0% | |
| GAATTGAGTGTTAAGAAGGA+AGG | - | chr4.4:18019462-18019481 | MS.gene34978:CDS | 35.0% | |
| GCAAAGAAAAGGAAGTCTAA+GGG | - | chr4.4:18019492-18019511 | MS.gene34978:CDS | 35.0% | |
| GGAATTGAAATGGACATTTC+TGG | - | chr4.4:18019624-18019643 | MS.gene34978:CDS | 35.0% | |
| GTTACTATGAACCCTTCAAA+GGG | - | chr4.4:18019124-18019143 | MS.gene34978:CDS | 35.0% | |
| TACTCCGTTTAACTATGTGA+GGG | - | chr4.4:18019290-18019309 | MS.gene34978:CDS | 35.0% | |
| TCTGGAAGAACAGCATAATT+TGG | + | chr4.4:18019366-18019385 | None:intergenic | 35.0% | |
| TGCATCAAGAAATGAGAATG+TGG | - | chr4.4:18019428-18019447 | MS.gene34978:CDS | 35.0% | |
| TTAACTATGTGAGGGATAAC+TGG | - | chr4.4:18019298-18019317 | MS.gene34978:CDS | 35.0% | |
| TTACTATGAACCCTTCAAAG+GGG | - | chr4.4:18019125-18019144 | MS.gene34978:CDS | 35.0% | |
| TTCTCATTTCTTGATGCATC+AGG | + | chr4.4:18019426-18019445 | None:intergenic | 35.0% | |
| ! | CTATGATTGGAAGTGCAAAT+GGG | - | chr4.4:18019223-18019242 | MS.gene34978:CDS | 35.0% |
| ! | TCTGATAGTGACAAACTTGT+TGG | + | chr4.4:18019910-18019929 | None:intergenic | 35.0% |
| AAGGTGGCAAAGCAAAGAAA+AGG | - | chr4.4:18019481-18019500 | MS.gene34978:CDS | 40.0% | |
| ATGTGCTGAATATGCCCAAT+TGG | - | chr4.4:18019100-18019119 | MS.gene34978:CDS | 40.0% | |
| CTACTCCGTTTAACTATGTG+AGG | - | chr4.4:18019289-18019308 | MS.gene34978:CDS | 40.0% | |
| CTTTGCCGATGAGCATAAAA+AGG | - | chr4.4:18019754-18019773 | MS.gene34978:CDS | 40.0% | |
| GAAACACTGCTATCATCCTT+CGG | + | chr4.4:18019555-18019574 | None:intergenic | 40.0% | |
| GGTTACTATGAACCCTTCAA+AGG | - | chr4.4:18019123-18019142 | MS.gene34978:CDS | 40.0% | |
| GGTTCATAGTAACCCCAATT+GGG | + | chr4.4:18019117-18019136 | None:intergenic | 40.0% | |
| TACTATGAACCCTTCAAAGG+GGG | - | chr4.4:18019126-18019145 | MS.gene34978:CDS | 40.0% | |
| TCAAGTGCCAAAGTCTTCTT+CGG | + | chr4.4:18019597-18019616 | None:intergenic | 40.0% | |
| TGTGCTGAATATGCCCAATT+GGG | - | chr4.4:18019101-18019120 | MS.gene34978:CDS | 40.0% | |
| TTGAGTGTTAAGAAGGAAGG+TGG | - | chr4.4:18019465-18019484 | MS.gene34978:CDS | 40.0% | |
| TTTCTTGATGCATCAGGATG+CGG | + | chr4.4:18019420-18019439 | None:intergenic | 40.0% | |
| TTTGCACTTCCAATCATAGC+TGG | + | chr4.4:18019222-18019241 | None:intergenic | 40.0% | |
| ! | CTTTTTATGCTCATCGGCAA+AGG | + | chr4.4:18019756-18019775 | None:intergenic | 40.0% |
| ! | GCTATGATTGGAAGTGCAAA+TGG | - | chr4.4:18019222-18019241 | MS.gene34978:CDS | 40.0% |
| ! | TTCCAGTTTGTTCTTGCACT+GGG | - | chr4.4:18019655-18019674 | MS.gene34978:CDS | 40.0% |
| ACTATGAACCCTTCAAAGGG+GGG | - | chr4.4:18019127-18019146 | MS.gene34978:CDS | 45.0% | |
| ATCACAATCACTCTCCTTGC+CGG | - | chr4.4:18019389-18019408 | MS.gene34978:CDS | 45.0% | |
| CTGGGAGGAAAATGAGCAAA+GGG | - | chr4.4:18019793-18019812 | MS.gene34978:CDS | 45.0% | |
| GAAACCACCGAAGAAGACTT+TGG | - | chr4.4:18019587-18019606 | MS.gene34978:CDS | 45.0% | |
| GAGAGTGATTGTGATGCTTC+TGG | + | chr4.4:18019384-18019403 | None:intergenic | 45.0% | |
| GATAGCAGTGTTTCAGCTCA+AGG | - | chr4.4:18019561-18019580 | MS.gene34978:CDS | 45.0% | |
| GGATCACGACCAGGAAAAAA+TGG | + | chr4.4:18019201-18019220 | None:intergenic | 45.0% | |
| GGGTTCATAGTAACCCCAAT+TGG | + | chr4.4:18019118-18019137 | None:intergenic | 45.0% | |
| GTGCAAGAACAAACTGGAAC+TGG | + | chr4.4:18019654-18019673 | None:intergenic | 45.0% | |
| GTGCTGAATATGCCCAATTG+GGG | - | chr4.4:18019102-18019121 | MS.gene34978:CDS | 45.0% | |
| GTTTCACGATCATTCATGGC+AGG | + | chr4.4:18019174-18019193 | None:intergenic | 45.0% | |
| TGGGAGGAAAATGAGCAAAG+GGG | - | chr4.4:18019794-18019813 | MS.gene34978:CDS | 45.0% | |
| TTCCCAGTGCAAGAACAAAC+TGG | + | chr4.4:18019660-18019679 | None:intergenic | 45.0% | |
| ! | AAGACTCATTGGGCTAGACA+TGG | - | chr4.4:18019882-18019901 | MS.gene34978:CDS | 45.0% |
| ! | CCACGCCTTTTTATGCTCAT+CGG | + | chr4.4:18019762-18019781 | None:intergenic | 45.0% |
| ! | CTTCAGCAGCAAGTTTTTCC+AGG | + | chr4.4:18019833-18019852 | None:intergenic | 45.0% |
| ! | GTTCCAGTTTGTTCTTGCAC+TGG | - | chr4.4:18019654-18019673 | MS.gene34978:CDS | 45.0% |
| !! | CTGGAAAAACTTGCTGCTGA+AGG | - | chr4.4:18019831-18019850 | MS.gene34978:CDS | 45.0% |
| !! | GAGCAAAGGGGCTTTTAAGA+AGG | - | chr4.4:18019806-18019825 | MS.gene34978:CDS | 45.0% |
| AATCTCGTGGCTGAAAGGGT+AGG | + | chr4.4:18019251-18019270 | None:intergenic | 50.0% | |
| AGCACAATCTCGTGGCTGAA+AGG | + | chr4.4:18019256-18019275 | None:intergenic | 50.0% | |
| AGTGCCAAAGTCTTCTTCGG+TGG | + | chr4.4:18019594-18019613 | None:intergenic | 50.0% | |
| ATCATAGCTGGATCACGACC+AGG | + | chr4.4:18019210-18019229 | None:intergenic | 50.0% | |
| ATCCTCAGCAGTGTTATCGC+TGG | - | chr4.4:18019679-18019698 | MS.gene34978:CDS | 50.0% | |
| ATCTCGTGGCTGAAAGGGTA+GGG | + | chr4.4:18019250-18019269 | None:intergenic | 50.0% | |
| CCGATGAGCATAAAAAGGCG+TGG | - | chr4.4:18019759-18019778 | MS.gene34978:CDS | 50.0% | |
| CTATCATCCTTCGGCTTCCT+GGG | + | chr4.4:18019546-18019565 | None:intergenic | 50.0% | |
| GATCATTCATGGCAGGCATG+AGG | + | chr4.4:18019167-18019186 | None:intergenic | 50.0% | |
| GCACAATCTCGTGGCTGAAA+GGG | + | chr4.4:18019255-18019274 | None:intergenic | 50.0% | |
| GCATCAGGATGCGGTATAAC+CGG | + | chr4.4:18019411-18019430 | None:intergenic | 50.0% | |
| GCTGGGAGGAAAATGAGCAA+AGG | - | chr4.4:18019792-18019811 | MS.gene34978:CDS | 50.0% | |
| GGTCGTGATCCAGCTATGAT+TGG | - | chr4.4:18019210-18019229 | MS.gene34978:CDS | 50.0% | |
| TCCGAAACAGCACAATCTCG+TGG | + | chr4.4:18019264-18019283 | None:intergenic | 50.0% | |
| TCCTCAGCAGTGTTATCGCT+GGG | - | chr4.4:18019680-18019699 | MS.gene34978:CDS | 50.0% | |
| ! | GCATAAAAAGGCGTGGTGCA+AGG | - | chr4.4:18019766-18019785 | MS.gene34978:CDS | 50.0% |
| !! | AGGGGCTTTTAAGAAGGTCC+TGG | - | chr4.4:18019812-18019831 | MS.gene34978:CDS | 50.0% |
| !! | GCCACGAGATTGTGCTGTTT+CGG | - | chr4.4:18019260-18019279 | MS.gene34978:CDS | 50.0% |
| !! | TTCCTGGGCTTCTTGGCTTT+TGG | + | chr4.4:18019531-18019550 | None:intergenic | 50.0% |
| ACCGAGATTCCCCCCTTTGA+AGG | + | chr4.4:18019139-18019158 | None:intergenic | 55.0% | |
| ACTGGATGACCCCGAGACAT+AGG | - | chr4.4:18019316-18019335 | MS.gene34978:CDS | 55.0% | |
| AGGATGCGGTATAACCGGCA+AGG | + | chr4.4:18019406-18019425 | None:intergenic | 55.0% | |
| CCCTTCAAAGGGGGGAATCT+CGG | - | chr4.4:18019135-18019154 | MS.gene34978:CDS | 55.0% | |
| CCGAGATTCCCCCCTTTGAA+GGG | + | chr4.4:18019138-18019157 | None:intergenic | 55.0% | |
| CCTCAGCAGTGTTATCGCTG+GGG | - | chr4.4:18019681-18019700 | MS.gene34978:CDS | 55.0% | |
| CTCCAAAAGCCAAGAAGCCC+AGG | - | chr4.4:18019526-18019545 | MS.gene34978:CDS | 55.0% | |
| GCTATCATCCTTCGGCTTCC+TGG | + | chr4.4:18019547-18019566 | None:intergenic | 55.0% | |
| TCTCGTGGCTGAAAGGGTAG+GGG | + | chr4.4:18019249-18019268 | None:intergenic | 55.0% | |
| !! | GGGCTTCTTGGCTTTTGGAG+TGG | + | chr4.4:18019526-18019545 | None:intergenic | 55.0% |
| AGGCGTGGTGCAAGGATAGC+TGG | - | chr4.4:18019774-18019793 | MS.gene34978:CDS | 60.0% | |
| CAAGAAGCCCAGGAAGCCGA+AGG | - | chr4.4:18019536-18019555 | MS.gene34978:CDS | 60.0% | |
| CAGTGTTATCGCTGGGGCGT+TGG | - | chr4.4:18019687-18019706 | MS.gene34978:CDS | 60.0% | |
| CCCCAGCGATAACACTGCTG+AGG | + | chr4.4:18019684-18019703 | None:intergenic | 60.0% | |
| CTTCGGCTTCCTGGGCTTCT+TGG | + | chr4.4:18019538-18019557 | None:intergenic | 60.0% | |
| GGCGTGGTGCAAGGATAGCT+GGG | - | chr4.4:18019775-18019794 | MS.gene34978:CDS | 60.0% | |
| GTGGTGCAAGGATAGCTGGG+AGG | - | chr4.4:18019778-18019797 | MS.gene34978:CDS | 60.0% | |
| !! | TGTTATCGCTGGGGCGTTGG+AGG | - | chr4.4:18019690-18019709 | MS.gene34978:CDS | 60.0% |
| !! | ATCGCTGGGGCGTTGGAGGC+TGG | - | chr4.4:18019694-18019713 | MS.gene34978:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18019090 | 18019932 | 18019090 | ID=MS.gene34978 |
| chr4.4 | mRNA | 18019090 | 18019932 | 18019090 | ID=MS.gene34978.t1;Parent=MS.gene34978 |
| chr4.4 | exon | 18019090 | 18019932 | 18019090 | ID=MS.gene34978.t1.exon1;Parent=MS.gene34978.t1 |
| chr4.4 | CDS | 18019090 | 18019932 | 18019090 | ID=cds.MS.gene34978.t1;Parent=MS.gene34978.t1 |
| Gene Sequence |
| Protein sequence |
