Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34987.t1 | RHN42300.1 | 94.6 | 406 | 18 | 1 | 1 | 406 | 1 | 402 | 8.80E-209 | 736.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34987.t1 | Q9ZUM9 | 56.3 | 410 | 141 | 10 | 2 | 392 | 7 | 397 | 2.0e-105 | 384.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34987.t1 | A0A396GMN6 | 94.6 | 406 | 18 | 1 | 1 | 406 | 1 | 402 | 6.3e-209 | 736.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34987.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34987.t1 | MTR_5g027020 | 48.082 | 391 | 152 | 9 | 5 | 387 | 7 | 354 | 1.83e-122 | 359 |
| MS.gene34987.t1 | MTR_1g038390 | 61.314 | 137 | 38 | 4 | 213 | 348 | 4 | 126 | 2.60e-40 | 140 |
| MS.gene34987.t1 | MTR_3g073000 | 25.545 | 321 | 187 | 11 | 8 | 313 | 13 | 296 | 1.10e-17 | 84.7 |
| MS.gene34987.t1 | MTR_3g073000 | 25.545 | 321 | 187 | 11 | 8 | 313 | 13 | 296 | 1.46e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34987.t1 | AT2G19640 | 52.941 | 408 | 158 | 10 | 2 | 392 | 7 | 397 | 1.60e-136 | 396 |
| MS.gene34987.t1 | AT2G19640 | 55.272 | 313 | 111 | 8 | 2 | 299 | 7 | 305 | 2.94e-110 | 327 |
| MS.gene34987.t1 | AT2G17900 | 25.253 | 297 | 175 | 11 | 8 | 291 | 18 | 280 | 8.01e-15 | 76.6 |
Find 73 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGAGTGATGAGAAAA+AGG | 0.175049 | 4.4:+18239321 | None:intergenic |
| AAAGATAAGCTTAATGCTTT+TGG | 0.201202 | 4.4:-18238913 | MS.gene34987:CDS |
| GGAGAATGAAGAAGAGGATA+TGG | 0.278011 | 4.4:-18238533 | MS.gene34987:CDS |
| AATAGGTCTGTTAGAGCTTA+TGG | 0.303956 | 4.4:-18238859 | MS.gene34987:CDS |
| TTTGCTGCTTCATCATTATC+AGG | 0.305057 | 4.4:+18239021 | None:intergenic |
| GGAGGAGCAATGTGAAAATA+TGG | 0.349748 | 4.4:-18238479 | MS.gene34987:CDS |
| AAGAGATTGTTGGAAGACTA+TGG | 0.351805 | 4.4:-18238631 | MS.gene34987:CDS |
| AACGAAAACAATTCATTATG+AGG | 0.359381 | 4.4:+18238961 | None:intergenic |
| GAAATTCAAGGTAGAGGAAA+AGG | 0.361389 | 4.4:-18239420 | MS.gene34987:CDS |
| TCTCTGAAACAGATGAAAAT+AGG | 0.367730 | 4.4:-18238876 | MS.gene34987:CDS |
| TTGAATTGCAAAATCGATAT+CGG | 0.369503 | 4.4:+18239238 | None:intergenic |
| TGATGATGAGGAGGAGGAGG+AGG | 0.375621 | 4.4:-18238503 | MS.gene34987:CDS |
| GAAGCAAAAGAGGATTGCTT+TGG | 0.410291 | 4.4:+18239151 | None:intergenic |
| TAATCAAATCTACACGCATT+AGG | 0.416714 | 4.4:+18238796 | None:intergenic |
| GATGTAATGTTGAATCGAAT+TGG | 0.426944 | 4.4:-18238588 | MS.gene34987:CDS |
| TCTACCTTCAAAACAGAACT+TGG | 0.428323 | 4.4:+18239444 | None:intergenic |
| TAACAAAACTTGAAAATTTG+AGG | 0.434129 | 4.4:+18239059 | None:intergenic |
| ACTTGAATGTTGATGATAAA+GGG | 0.440641 | 4.4:-18238285 | MS.gene34987:CDS |
| GACTTGAATGTTGATGATAA+AGG | 0.457168 | 4.4:-18238286 | MS.gene34987:CDS |
| AGACCGGCCGCGACATCATA+AGG | 0.460613 | 4.4:+18238757 | None:intergenic |
| GTATCACCTTGTGGCGGTAA+AGG | 0.461262 | 4.4:+18238364 | None:intergenic |
| TGCTTGAAGTTGTCTTTCGA+GGG | 0.463012 | 4.4:+18239122 | None:intergenic |
| TTAATGAAAACTATTCTAGT+AGG | 0.465091 | 4.4:-18238657 | MS.gene34987:CDS |
| GGATGATGATGAGGAGGAGG+AGG | 0.473056 | 4.4:-18238506 | MS.gene34987:CDS |
| AACAAAACTTGAAAATTTGA+GGG | 0.484733 | 4.4:+18239060 | None:intergenic |
| GTGCTTGAAGTTGTCTTTCG+AGG | 0.486050 | 4.4:+18239121 | None:intergenic |
| AGGGGTTGTTGAAGCAAAAG+AGG | 0.497882 | 4.4:+18239141 | None:intergenic |
| TAGTAGGCAGAAGAGATTGT+TGG | 0.499496 | 4.4:-18238641 | MS.gene34987:CDS |
| GTAGAGGAAATTCAAGGTAG+AGG | 0.507246 | 4.4:-18239426 | MS.gene34987:CDS |
| TTGAAGGTAGAGGAAATTCA+AGG | 0.513971 | 4.4:-18239432 | MS.gene34987:CDS |
| AAAATCAGTATTACTAAGAC+CGG | 0.525101 | 4.4:+18238741 | None:intergenic |
| TCTGATAATGAGAGTGTTGA+AGG | 0.527867 | 4.4:-18238565 | MS.gene34987:CDS |
| GCATCTCAACCTCTCAAAGC+TGG | 0.531187 | 4.4:-18239390 | MS.gene34987:CDS |
| ACAAAACTTGAAAATTTGAG+GGG | 0.531312 | 4.4:+18239061 | None:intergenic |
| GTGGTAGGGTAAAGGAGGAT+TGG | 0.532177 | 4.4:+18239345 | None:intergenic |
| TGAAGAAGAGGATATGGCTA+TGG | 0.532611 | 4.4:-18238527 | MS.gene34987:CDS |
| CCACCTTATGATGTCGCGGC+CGG | 0.533777 | 4.4:-18238760 | MS.gene34987:CDS |
| TGTGTGATAGAACAAATTGC+TGG | 0.536848 | 4.4:-18238399 | MS.gene34987:CDS |
| TGTGGAGGAGAATGAAGAAG+AGG | 0.542011 | 4.4:-18238539 | MS.gene34987:CDS |
| TCGTTATTGTCAGTTTCTGA+TGG | 0.542245 | 4.4:+18238454 | None:intergenic |
| TATGGATGATGATGAGGAGG+AGG | 0.542541 | 4.4:-18238509 | MS.gene34987:CDS |
| GGGATGCAATAATGTGGTGT+AGG | 0.556795 | 4.4:+18238995 | None:intergenic |
| TGATACATTATCTAATGTCA+TGG | 0.566313 | 4.4:-18238347 | MS.gene34987:CDS |
| ACGCATTAGGAAGACAATCA+TGG | 0.569579 | 4.4:+18238809 | None:intergenic |
| TCATGATGTTCCACAAGGTA+GGG | 0.572819 | 4.4:-18238704 | MS.gene34987:CDS |
| ACGAAAACAATTCATTATGA+GGG | 0.582255 | 4.4:+18238962 | None:intergenic |
| TGAGAGTGTTGAAGGAAATG+TGG | 0.582356 | 4.4:-18238557 | MS.gene34987:CDS |
| GTTGATGATAAAGGGCAAAG+TGG | 0.587949 | 4.4:-18238277 | MS.gene34987:CDS |
| ATGATTTGACCAGCTTTGAG+AGG | 0.589051 | 4.4:+18239381 | None:intergenic |
| AAGGGGTGGTAGGGTAAAGG+AGG | 0.590878 | 4.4:+18239340 | None:intergenic |
| GGCTATGGATGATGATGAGG+AGG | 0.599149 | 4.4:-18238512 | MS.gene34987:CDS |
| GTGTGATAGAACAAATTGCT+GGG | 0.601867 | 4.4:-18238398 | MS.gene34987:CDS |
| AAACAAATCTCCCTACCTTG+TGG | 0.609840 | 4.4:+18238694 | None:intergenic |
| TCAACTCATCACATTCCACA+TGG | 0.627136 | 4.4:-18239197 | MS.gene34987:CDS |
| TTAGCTCCTTTACCGCCACA+AGG | 0.628714 | 4.4:-18238370 | MS.gene34987:CDS |
| TCATGGAATGTAATGTCTGT+GGG | 0.630100 | 4.4:-18238330 | MS.gene34987:CDS |
| TTAGATAATGTATCACCTTG+TGG | 0.636379 | 4.4:+18238355 | None:intergenic |
| GTCATGGAATGTAATGTCTG+TGG | 0.637762 | 4.4:-18238331 | MS.gene34987:CDS |
| TTCATGATGTTCCACAAGGT+AGG | 0.641511 | 4.4:-18238705 | MS.gene34987:CDS |
| TATGGCTATGGATGATGATG+AGG | 0.644568 | 4.4:-18238515 | MS.gene34987:CDS |
| GCTTGAAGTTGTCTTTCGAG+GGG | 0.645950 | 4.4:+18239123 | None:intergenic |
| GCAAAGTGGAGAAGTTCACA+TGG | 0.648528 | 4.4:-18238263 | MS.gene34987:CDS |
| TAATCCACCTTATGATGTCG+CGG | 0.663274 | 4.4:-18238764 | MS.gene34987:CDS |
| GAGTGTTGAAGGAAATGTGG+AGG | 0.667098 | 4.4:-18238554 | MS.gene34987:CDS |
| CAACTCATCACATTCCACAT+GGG | 0.668131 | 4.4:-18239196 | MS.gene34987:CDS |
| CAAAACTTGAAAATTTGAGG+GGG | 0.669304 | 4.4:+18239062 | None:intergenic |
| TAATGCTTGACAAACCCATG+TGG | 0.692539 | 4.4:+18239182 | None:intergenic |
| GGAGGATTGGTGAATCTGTG+AGG | 0.693945 | 4.4:+18239358 | None:intergenic |
| ATGATTCATGATGTTCCACA+AGG | 0.697653 | 4.4:-18238709 | MS.gene34987:CDS |
| CCGGCCGCGACATCATAAGG+TGG | 0.702146 | 4.4:+18238760 | None:intergenic |
| GATAATGTATCACCTTGTGG+CGG | 0.702824 | 4.4:+18238358 | None:intergenic |
| TGTGATAGAACAAATTGCTG+GGG | 0.747351 | 4.4:-18238397 | MS.gene34987:CDS |
| AAGTGGAGAAGTTCACATGG+AGG | 0.760776 | 4.4:-18238260 | MS.gene34987:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAACTTGAAAATTTGA+GGG | + | chr4.4:18238651-18238670 | None:intergenic | 20.0% |
| !! | TAACAAAACTTGAAAATTTG+AGG | + | chr4.4:18238652-18238671 | None:intergenic | 20.0% |
| !! | TTAATGAAAACTATTCTAGT+AGG | - | chr4.4:18239051-18239070 | MS.gene34987:CDS | 20.0% |
| !!! | GTAATACTGATTTTGTTATT+AGG | - | chr4.4:18238976-18238995 | MS.gene34987:CDS | 20.0% |
| ! | AAAATCAGTATTACTAAGAC+CGG | + | chr4.4:18238970-18238989 | None:intergenic | 25.0% |
| ! | AACGAAAACAATTCATTATG+AGG | + | chr4.4:18238750-18238769 | None:intergenic | 25.0% |
| ! | ACAAAACTTGAAAATTTGAG+GGG | + | chr4.4:18238650-18238669 | None:intergenic | 25.0% |
| ! | ACGAAAACAATTCATTATGA+GGG | + | chr4.4:18238749-18238768 | None:intergenic | 25.0% |
| ! | TCAAAAAGAAATAAGCATGT+GGG | + | chr4.4:18239283-18239302 | None:intergenic | 25.0% |
| ! | TGATACATTATCTAATGTCA+TGG | - | chr4.4:18239361-18239380 | MS.gene34987:CDS | 25.0% |
| ! | TTCAAAAAGAAATAAGCATG+TGG | + | chr4.4:18239284-18239303 | None:intergenic | 25.0% |
| ! | TTGAATTGCAAAATCGATAT+CGG | + | chr4.4:18238473-18238492 | None:intergenic | 25.0% |
| !! | AAAGATAAGCTTAATGCTTT+TGG | - | chr4.4:18238795-18238814 | MS.gene34987:CDS | 25.0% |
| !! | CTAGAATAGTTTTCATTAAC+AGG | + | chr4.4:18239050-18239069 | None:intergenic | 25.0% |
| !!! | ACTTGAATGTTGATGATAAA+GGG | - | chr4.4:18239423-18239442 | MS.gene34987:CDS | 25.0% |
| AAAAAAGGGATGCAATAATG+TGG | + | chr4.4:18238722-18238741 | None:intergenic | 30.0% | |
| AAAGAAGAGTGATGAGAAAA+AGG | + | chr4.4:18238390-18238409 | None:intergenic | 30.0% | |
| AAGAAGAGTGATGAGAAAAA+GGG | + | chr4.4:18238389-18238408 | None:intergenic | 30.0% | |
| CAAAACTTGAAAATTTGAGG+GGG | + | chr4.4:18238649-18238668 | None:intergenic | 30.0% | |
| GATGTAATGTTGAATCGAAT+TGG | - | chr4.4:18239120-18239139 | MS.gene34987:CDS | 30.0% | |
| TAATCAAATCTACACGCATT+AGG | + | chr4.4:18238915-18238934 | None:intergenic | 30.0% | |
| TTAGATAATGTATCACCTTG+TGG | + | chr4.4:18239356-18239375 | None:intergenic | 30.0% | |
| ! | TTTTCATCTGTTTCAGAGAA+AGG | + | chr4.4:18238831-18238850 | None:intergenic | 30.0% |
| !! | GACTTGAATGTTGATGATAA+AGG | - | chr4.4:18239422-18239441 | MS.gene34987:CDS | 30.0% |
| !! | TCTCTGAAACAGATGAAAAT+AGG | - | chr4.4:18238832-18238851 | MS.gene34987:CDS | 30.0% |
| !!! | CAAGTTTTGTTATCTCTACA+AGG | - | chr4.4:18238660-18238679 | MS.gene34987:CDS | 30.0% |
| AAGAGATTGTTGGAAGACTA+TGG | - | chr4.4:18239077-18239096 | MS.gene34987:CDS | 35.0% | |
| AATAGGTCTGTTAGAGCTTA+TGG | - | chr4.4:18238849-18238868 | MS.gene34987:CDS | 35.0% | |
| AGAAGAGTGATGAGAAAAAG+GGG | + | chr4.4:18238388-18238407 | None:intergenic | 35.0% | |
| ATGATTCATGATGTTCCACA+AGG | - | chr4.4:18238999-18239018 | MS.gene34987:CDS | 35.0% | |
| GAAATTCAAGGTAGAGGAAA+AGG | - | chr4.4:18238288-18238307 | MS.gene34987:CDS | 35.0% | |
| GGTTGAAAAACGAAGCATAA+GGG | + | chr4.4:18238881-18238900 | None:intergenic | 35.0% | |
| GTGTGATAGAACAAATTGCT+GGG | - | chr4.4:18239310-18239329 | MS.gene34987:CDS | 35.0% | |
| TCATGGAATGTAATGTCTGT+GGG | - | chr4.4:18239378-18239397 | MS.gene34987:CDS | 35.0% | |
| TCGTTATTGTCAGTTTCTGA+TGG | + | chr4.4:18239257-18239276 | None:intergenic | 35.0% | |
| TCTACCTTCAAAACAGAACT+TGG | + | chr4.4:18238267-18238286 | None:intergenic | 35.0% | |
| TGGTTGAAAAACGAAGCATA+AGG | + | chr4.4:18238882-18238901 | None:intergenic | 35.0% | |
| TGTGATAGAACAAATTGCTG+GGG | - | chr4.4:18239311-18239330 | MS.gene34987:CDS | 35.0% | |
| TGTGTGATAGAACAAATTGC+TGG | - | chr4.4:18239309-18239328 | MS.gene34987:CDS | 35.0% | |
| TTGAAGGTAGAGGAAATTCA+AGG | - | chr4.4:18238276-18238295 | MS.gene34987:CDS | 35.0% | |
| ! | ATTATGAGGGTGCGAAAAAA+GGG | + | chr4.4:18238736-18238755 | None:intergenic | 35.0% |
| ! | TTTGCTGCTTCATCATTATC+AGG | + | chr4.4:18238690-18238709 | None:intergenic | 35.0% |
| !! | TCTGATAATGAGAGTGTTGA+AGG | - | chr4.4:18239143-18239162 | MS.gene34987:CDS | 35.0% |
| !! | TGTTCCAAGTTCTGTTTTGA+AGG | - | chr4.4:18238260-18238279 | MS.gene34987:CDS | 35.0% |
| !!! | AAGTTCTGTTTTGAAGGTAG+AGG | - | chr4.4:18238266-18238285 | MS.gene34987:CDS | 35.0% |
| AAACAAATCTCCCTACCTTG+TGG | + | chr4.4:18239017-18239036 | None:intergenic | 40.0% | |
| AACTTGAAAATTTGAGGGGG+CGG | + | chr4.4:18238646-18238665 | None:intergenic | 40.0% | |
| ACGCATTAGGAAGACAATCA+TGG | + | chr4.4:18238902-18238921 | None:intergenic | 40.0% | |
| CAACTCATCACATTCCACAT+GGG | - | chr4.4:18238512-18238531 | MS.gene34987:CDS | 40.0% | |
| GAAGCAAAAGAGGATTGCTT+TGG | + | chr4.4:18238560-18238579 | None:intergenic | 40.0% | |
| GATAATGTATCACCTTGTGG+CGG | + | chr4.4:18239353-18239372 | None:intergenic | 40.0% | |
| GGAGAATGAAGAAGAGGATA+TGG | - | chr4.4:18239175-18239194 | MS.gene34987:CDS | 40.0% | |
| GGAGGAGCAATGTGAAAATA+TGG | - | chr4.4:18239229-18239248 | MS.gene34987:CDS | 40.0% | |
| GTAGAGGAAATTCAAGGTAG+AGG | - | chr4.4:18238282-18238301 | MS.gene34987:CDS | 40.0% | |
| GTCATGGAATGTAATGTCTG+TGG | - | chr4.4:18239377-18239396 | MS.gene34987:CDS | 40.0% | |
| TAATCCACCTTATGATGTCG+CGG | - | chr4.4:18238944-18238963 | MS.gene34987:CDS | 40.0% | |
| TAATGCTTGACAAACCCATG+TGG | + | chr4.4:18238529-18238548 | None:intergenic | 40.0% | |
| TAGTAGGCAGAAGAGATTGT+TGG | - | chr4.4:18239067-18239086 | MS.gene34987:CDS | 40.0% | |
| TCAACTCATCACATTCCACA+TGG | - | chr4.4:18238511-18238530 | MS.gene34987:CDS | 40.0% | |
| TCATGATGTTCCACAAGGTA+GGG | - | chr4.4:18239004-18239023 | MS.gene34987:CDS | 40.0% | |
| TGAAGAAGAGGATATGGCTA+TGG | - | chr4.4:18239181-18239200 | MS.gene34987:CDS | 40.0% | |
| TGCTTGAAGTTGTCTTTCGA+GGG | + | chr4.4:18238589-18238608 | None:intergenic | 40.0% | |
| TTCATGATGTTCCACAAGGT+AGG | - | chr4.4:18239003-18239022 | MS.gene34987:CDS | 40.0% | |
| ! | CATTATGAGGGTGCGAAAAA+AGG | + | chr4.4:18238737-18238756 | None:intergenic | 40.0% |
| ! | TATGGCTATGGATGATGATG+AGG | - | chr4.4:18239193-18239212 | MS.gene34987:CDS | 40.0% |
| !! | ATGATTTGACCAGCTTTGAG+AGG | + | chr4.4:18238330-18238349 | None:intergenic | 40.0% |
| !! | GTTGATGATAAAGGGCAAAG+TGG | - | chr4.4:18239431-18239450 | MS.gene34987:CDS | 40.0% |
| !! | TGAGAGTGTTGAAGGAAATG+TGG | - | chr4.4:18239151-18239170 | MS.gene34987:CDS | 40.0% |
| AAAAAGGGGTGGTAGGGTAA+AGG | + | chr4.4:18238374-18238393 | None:intergenic | 45.0% | |
| AAGTGGAGAAGTTCACATGG+AGG | - | chr4.4:18239448-18239467 | MS.gene34987:CDS | 45.0% | |
| AGAGTGATGAGAAAAAGGGG+TGG | + | chr4.4:18238385-18238404 | None:intergenic | 45.0% | |
| AGGGGTTGTTGAAGCAAAAG+AGG | + | chr4.4:18238570-18238589 | None:intergenic | 45.0% | |
| GATGAGAAAAAGGGGTGGTA+GGG | + | chr4.4:18238380-18238399 | None:intergenic | 45.0% | |
| GCAAAGTGGAGAAGTTCACA+TGG | - | chr4.4:18239445-18239464 | MS.gene34987:CDS | 45.0% | |
| GCTTGAAGTTGTCTTTCGAG+GGG | + | chr4.4:18238588-18238607 | None:intergenic | 45.0% | |
| GGGATGCAATAATGTGGTGT+AGG | + | chr4.4:18238716-18238735 | None:intergenic | 45.0% | |
| GTGCTTGAAGTTGTCTTTCG+AGG | + | chr4.4:18238590-18238609 | None:intergenic | 45.0% | |
| TGATGAGAAAAAGGGGTGGT+AGG | + | chr4.4:18238381-18238400 | None:intergenic | 45.0% | |
| TGTGGAGGAGAATGAAGAAG+AGG | - | chr4.4:18239169-18239188 | MS.gene34987:CDS | 45.0% | |
| ! | TATGGATGATGATGAGGAGG+AGG | - | chr4.4:18239199-18239218 | MS.gene34987:CDS | 45.0% |
| !! | GAGTGTTGAAGGAAATGTGG+AGG | - | chr4.4:18239154-18239173 | MS.gene34987:CDS | 45.0% |
| GCATCTCAACCTCTCAAAGC+TGG | - | chr4.4:18238318-18238337 | MS.gene34987:CDS | 50.0% | |
| GTATCACCTTGTGGCGGTAA+AGG | + | chr4.4:18239347-18239366 | None:intergenic | 50.0% | |
| GTGGTAGGGTAAAGGAGGAT+TGG | + | chr4.4:18238366-18238385 | None:intergenic | 50.0% | |
| TTAGCTCCTTTACCGCCACA+AGG | - | chr4.4:18239338-18239357 | MS.gene34987:CDS | 50.0% | |
| ! | GGAGGATTGGTGAATCTGTG+AGG | + | chr4.4:18238353-18238372 | None:intergenic | 50.0% |
| ! | GGCTATGGATGATGATGAGG+AGG | - | chr4.4:18239196-18239215 | MS.gene34987:CDS | 50.0% |
| AAGGGGTGGTAGGGTAAAGG+AGG | + | chr4.4:18238371-18238390 | None:intergenic | 55.0% | |
| ! | GGATGATGATGAGGAGGAGG+AGG | - | chr4.4:18239202-18239221 | MS.gene34987:CDS | 55.0% |
| ! | TGATGATGAGGAGGAGGAGG+AGG | - | chr4.4:18239205-18239224 | MS.gene34987:CDS | 55.0% |
| AGACCGGCCGCGACATCATA+AGG | + | chr4.4:18238954-18238973 | None:intergenic | 60.0% | |
| CCACCTTATGATGTCGCGGC+CGG | - | chr4.4:18238948-18238967 | MS.gene34987:CDS | 60.0% | |
| TGATGAGGAGGAGGAGGAGG+AGG | - | chr4.4:18239208-18239227 | MS.gene34987:CDS | 60.0% | |
| CCGGCCGCGACATCATAAGG+TGG | + | chr4.4:18238951-18238970 | None:intergenic | 65.0% | |
| TGAGGAGGAGGAGGAGGAGG+AGG | - | chr4.4:18239211-18239230 | MS.gene34987:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18238255 | 18239475 | 18238255 | ID=MS.gene34987 |
| chr4.4 | mRNA | 18238255 | 18239475 | 18238255 | ID=MS.gene34987.t1;Parent=MS.gene34987 |
| chr4.4 | exon | 18238255 | 18239475 | 18238255 | ID=MS.gene34987.t1.exon1;Parent=MS.gene34987.t1 |
| chr4.4 | CDS | 18238255 | 18239475 | 18238255 | ID=cds.MS.gene34987.t1;Parent=MS.gene34987.t1 |
| Gene Sequence |
| Protein sequence |
