AlfalfaGEDB | MS.gene34995

M. sativa cultivar XinJiangDaYe / MS.gene34995

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34995.t1	PNX80761.1	59.6	161	57	3	67	225	32	186	2.40E-44	189.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34995.t1	Q9LKR4	34.9	129	78	3	89	211	61	189	1.0e-11	72.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34995.t1	A0A2K3LQE0	59.6	161	57	3	67	225	32	186	1.8e-44	189.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene34995.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34995.t1	MTR_3g080590	65.161	155	32	2	1	133	1	155	5.10e-62	192
MS.gene34995.t1	MTR_7g446520	36.646	161	86	3	78	237	83	228	1.46e-27	108
MS.gene34995.t1	MTR_7g028855	40.789	152	81	3	80	224	117	266	1.88e-27	109
MS.gene34995.t1	MTR_5g076070	24.091	220	146	5	23	237	8	211	2.54e-15	73.9
MS.gene34995.t1	MTR_8g035530	41.667	72	41	1	72	142	2	73	3.74e-13	63.5
MS.gene34995.t1	MTR_1g070355	28.148	135	92	3	83	212	74	208	8.11e-13	67.8
MS.gene34995.t1	MTR_6g022080	24.390	164	118	3	80	238	82	244	1.40e-12	65.9
MS.gene34995.t1	MTR_7g446510	40.964	83	47	2	156	237	155	236	4.11e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34995.t1	AT5G28530	34.884	129	78	3	89	211	61	189	1.33e-14	73.6
MS.gene34995.t1	AT5G28530	34.884	129	78	3	89	211	61	189	1.39e-14	73.2
MS.gene34995.t1	AT5G28530	34.884	129	78	3	89	211	61	189	1.39e-14	73.2
MS.gene34995.t1	AT5G28530	34.884	129	78	3	89	211	61	189	1.63e-14	73.2
MS.gene34995.t1	AT5G28530	34.884	129	78	3	89	211	61	189	1.83e-14	72.8

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Find 39 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACTTGTATAATTTCA+CGG	0.466531	4.4:-18329801	MS.gene34995:CDS
AACGCGCTAGAGCTAATTCA+TGG	0.466898	4.4:+18329974	None:intergenic
AAGGGTGGCCATGAAGAGCT+TGG	0.503025	4.4:-18329833	MS.gene34995:CDS
AATGGTGTTTGCAGTGAGCA+AGG	0.608644	4.4:-18330330	MS.gene34995:CDS
ACAACTTTGTTTGTAAGAAT+TGG	0.289038	4.4:-18330023	MS.gene34995:CDS
ACATAGTGATACAAATAAGG+TGG	0.650304	4.4:-18330469	MS.gene34995:CDS
ACTGATGCATTTGTAACCAT+CGG	0.601265	4.4:+18330296	None:intergenic
AGAGCTTGGGTTTATCAAAA+AGG	0.330351	4.4:-18329819	MS.gene34995:CDS
AGGGTGGCCATGAAGAGCTT+GGG	0.480186	4.4:-18329832	MS.gene34995:CDS
ATAAGAATGGCAGCCGATCT+AGG	0.405495	4.4:-18330089	MS.gene34995:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAGTGATACAAATAAGG+TGG	-	chr4.4:18329818-18329837	MS.gene34995:CDS	30.0%
CAACTAGTATGCAATAAAGA+GGG	-	chr4.4:18330158-18330177	MS.gene34995:CDS	30.0%
GAAGATATAGAAGTCAATAG+GGG	-	chr4.4:18329882-18329901	MS.gene34995:CDS	30.0%
GTGAAGATATAGAAGTCAAT+AGG	-	chr4.4:18329880-18329899	MS.gene34995:CDS	30.0%
TATCAACTTCACTCAATTTC+CGG	+	chr4.4:18330361-18330380	None:intergenic	30.0%
TCAACTAGTATGCAATAAAG+AGG	-	chr4.4:18330157-18330176	MS.gene34995:CDS	30.0%
ACTGATGCATTTGTAACCAT+CGG	+	chr4.4:18329994-18330013	None:intergenic	35.0%
AGAGCTTGGGTTTATCAAAA+AGG	-	chr4.4:18330468-18330487	MS.gene34995:CDS	35.0%
GGATATAGAATTCAACACAG+AGG	-	chr4.4:18330034-18330053	MS.gene34995:CDS	35.0%
GTATCACTATGTACATCAAG+AGG	+	chr4.4:18329810-18329829	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	18329780	18330529	18329780	ID=MS.gene34995
chr4.4	mRNA	18329780	18330529	18329780	ID=MS.gene34995.t1;Parent=MS.gene34995
chr4.4	exon	18329780	18330529	18329780	ID=MS.gene34995.t1.exon1;Parent=MS.gene34995.t1
chr4.4	CDS	18329780	18330529	18329780	ID=cds.MS.gene34995.t1;Parent=MS.gene34995.t1

Gene Sequence

>MS.gene34995

ATGTTTACATATAGTGAAGCAATGTCGCCTCTTGATGTACATAGTGATACAAATAAGGTGGAATTTAATAGTTTTAATGATGTTGACACTGATAGTGATAGTGAAGATATAGAAGTCAATAGGGGCAACAATGTTCGTACTAATAGAGATGCAGACGGTGTGGAATTCAACCATGGTAATGGTGTTTGCAGTGAGCAAGGGAAAGAGAACTCCGATGGTTACAAATGCATCAGTGATGTGACAGATGATGTAAGGGATATAGAATTCAACACAGAGGAAGAAGCTACAGAGTTTTATGTAATGTTTGCGAGATACCACAGATTTGCCGTAAGAAAAGATGAAGTGAAACGTGATTCTAATGAGAACATTATTATGCGTCAACTAGTATGCAATAAAGAGGGTGTTAATGATGAAAAAAATAAGAATGGCAGCCGATCTAGGACAACCATTCGAACTAACTGTTGTGCGAAACTTCGAGTAGTCTACAACTTTGTTTGTAAGAATTGGAGAGTTTCTATTTCAAACACTCACAACCATGAATTAGCTCTAGCGCGTTTTGTTCATTTGATTCCTAATTACCGGAAATTGAGTGAAGTTGATAAACAAGTTGTTAGTGACCTGCATTCACAAGGTGTCAGAGCATGTCATATCTTGGGTTTTTTTTTATGGGTGAAAAGGGTGGCCATGAAGAGCTTGGGTTTATCAAAAAGGACTTGTATAATTTCACGGATCATCAAGCAAAAGGGTTAA

Protein sequence

>MS.gene34995.t1

MFTYSEAMSPLDVHSDTNKVEFNSFNDVDTDSDSEDIEVNRGNNVRTNRDADGVEFNHGNGVCSEQGKENSDGYKCISDVTDDVRDIEFNTEEEATEFYVMFARYHRFAVRKDEVKRDSNENIIMRQLVCNKEGVNDEKNKNGSRSRTTIRTNCCAKLRVVYNFVCKNWRVSISNTHNHELALARFVHLIPNYRKLSEVDKQVVSDLHSQGVRACHILGFFLWVKRVAMKSLGLSKRTCIISRIIKQKG