Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35141.t1 | XP_013457345.1 | 97.4 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 6.60E-69 | 270 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35141.t1 | O64702 | 53.3 | 152 | 69 | 2 | 1 | 151 | 1 | 151 | 3.6e-31 | 136.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35141.t1 | I3SF63 | 97.4 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 4.8e-69 | 270.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35141.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35141.t1 | MTR_4g094622 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.85e-104 | 295 |
| MS.gene35141.t1 | MTR_8g073345 | 46.067 | 89 | 48 | 0 | 59 | 147 | 33 | 121 | 1.05e-23 | 90.5 |
| MS.gene35141.t1 | MTR_8g073345 | 46.067 | 89 | 48 | 0 | 59 | 147 | 33 | 121 | 1.62e-23 | 89.7 |
| MS.gene35141.t1 | MTR_3g115580 | 47.674 | 86 | 45 | 0 | 53 | 138 | 35 | 120 | 3.08e-23 | 89.4 |
| MS.gene35141.t1 | MTR_7g068280 | 51.316 | 76 | 37 | 0 | 59 | 134 | 47 | 122 | 1.88e-22 | 87.8 |
| MS.gene35141.t1 | MTR_1g115220 | 48.315 | 89 | 45 | 1 | 59 | 146 | 98 | 186 | 1.09e-21 | 87.0 |
| MS.gene35141.t1 | MTR_7g082820 | 44.444 | 81 | 44 | 1 | 55 | 135 | 5 | 84 | 2.32e-17 | 73.9 |
| MS.gene35141.t1 | MTR_5g024180 | 38.272 | 81 | 50 | 0 | 52 | 132 | 25 | 105 | 4.54e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35141.t1 | AT2G34450 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 4.92e-51 | 160 |
| MS.gene35141.t1 | AT2G34450 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 4.92e-51 | 160 |
| MS.gene35141.t1 | AT2G34450 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 4.92e-51 | 160 |
| MS.gene35141.t1 | AT2G34450 | 55.556 | 153 | 65 | 3 | 1 | 151 | 1 | 152 | 3.30e-49 | 155 |
| MS.gene35141.t1 | AT2G17560 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.43e-24 | 90.5 |
| MS.gene35141.t1 | AT2G17560 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.97e-24 | 90.5 |
| MS.gene35141.t1 | AT2G17560 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.97e-24 | 90.5 |
| MS.gene35141.t1 | AT3G51880 | 44.554 | 101 | 56 | 0 | 50 | 150 | 40 | 140 | 1.60e-23 | 90.5 |
| MS.gene35141.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.06e-23 | 90.5 |
| MS.gene35141.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.06e-23 | 90.5 |
| MS.gene35141.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.06e-23 | 90.5 |
| MS.gene35141.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.26e-23 | 90.9 |
| MS.gene35141.t1 | AT1G20693 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.03e-22 | 86.3 |
| MS.gene35141.t1 | AT1G20693 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.16e-22 | 86.3 |
| MS.gene35141.t1 | AT4G35570 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.58e-22 | 85.5 |
| MS.gene35141.t1 | AT4G35570 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.58e-22 | 85.5 |
| MS.gene35141.t1 | AT1G20693 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 1.19e-21 | 85.1 |
| MS.gene35141.t1 | AT1G20696 | 45.556 | 90 | 47 | 1 | 59 | 148 | 31 | 118 | 7.78e-21 | 82.8 |
| MS.gene35141.t1 | AT1G20696 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 4.96e-18 | 75.9 |
| MS.gene35141.t1 | AT1G20696 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 5.22e-18 | 75.5 |
| MS.gene35141.t1 | AT5G23420 | 47.059 | 68 | 35 | 1 | 60 | 127 | 112 | 178 | 6.33e-13 | 64.3 |
| MS.gene35141.t1 | AT1G20696 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 4.62e-12 | 59.3 |
| MS.gene35141.t1 | AT1G20696 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 1.25e-11 | 58.2 |
Find 20 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCGGCCTCCACCTC+CGG | 0.314496 | 4.4:-19470549 | MS.gene35141:CDS |
| AACAGAGTATAACAAGAAAA+TGG | 0.350035 | 4.4:-19467753 | MS.gene35141:intron |
| TCAAAAGAACGCTTCTTCTT+CGG | 0.408803 | 4.4:-19470562 | MS.gene35141:CDS |
| TCACGCATTGACTTAACATC+TGG | 0.420177 | 4.4:+19469122 | None:intergenic |
| CTTCTTCGGCCTCCACCTCC+GGG | 0.468963 | 4.4:-19470548 | MS.gene35141:intron |
| AGTGAAAGGGTACCCGGAGG+TGG | 0.487598 | 4.4:+19470536 | None:intergenic |
| GAAAGGGTACCCGGAGGTGG+AGG | 0.521126 | 4.4:+19470539 | None:intergenic |
| GCAAGGCATGCGGAGAGAAG+TGG | 0.547557 | 4.4:-19468831 | MS.gene35141:CDS |
| AAGAAGTAAAAGAAAGCAGT+GGG | 0.571753 | 4.4:+19469845 | None:intergenic |
| GTTGGCGATCAAATCGAATG+AGG | 0.587280 | 4.4:-19469969 | MS.gene35141:CDS |
| TCTGATGCTTTGCAGGAAAG+CGG | 0.606454 | 4.4:-19467658 | MS.gene35141:intron |
| CAAGAAGTAAAAGAAAGCAG+TGG | 0.613925 | 4.4:+19469844 | None:intergenic |
| GAAGTAAAAGAAAGCAGTGG+GGG | 0.623133 | 4.4:+19469847 | None:intergenic |
| ATACAGATCGGCAAGGCATG+CGG | 0.626292 | 4.4:-19468841 | MS.gene35141:intron |
| TGAGTATGAAGAAACTGATG+AGG | 0.628456 | 4.4:-19467635 | MS.gene35141:CDS |
| TTGGCGATCAAATCGAATGA+GGG | 0.633911 | 4.4:-19469968 | MS.gene35141:CDS |
| TGTGTTCATACAGATCGGCA+AGG | 0.661731 | 4.4:-19468848 | MS.gene35141:intron |
| AAGTAAAAGAAAGCAGTGGG+GGG | 0.691651 | 4.4:+19469848 | None:intergenic |
| AGGGAATGAAGAGATCGTTG+CGG | 0.720017 | 4.4:-19469949 | MS.gene35141:CDS |
| AGAAGTAAAAGAAAGCAGTG+GGG | 0.758083 | 4.4:+19469846 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACATTATTAATTTAACA+AGG | - | chr4.4:19468498-19468517 | MS.gene35141:intron | 10.0% |
| !! | ATAAATTAAGTTTCAAAAAT+TGG | - | chr4.4:19469507-19469526 | MS.gene35141:intron | 10.0% |
| !! | ATAAATTATGTTTCAAAAAT+TGG | - | chr4.4:19469582-19469601 | MS.gene35141:intron | 10.0% |
| !! | ATACATTATTAATTTAACAA+GGG | - | chr4.4:19468499-19468518 | MS.gene35141:intron | 10.0% |
| !! | TAAAAAAAATTAAAGAAAAG+GGG | - | chr4.4:19470098-19470117 | MS.gene35141:intron | 10.0% |
| !! | TTGTTATATTTGAAAAAAAT+TGG | - | chr4.4:19469739-19469758 | MS.gene35141:intron | 10.0% |
| !! | ACTACTATTTACAATATATT+TGG | - | chr4.4:19468904-19468923 | MS.gene35141:intron | 15.0% |
| !! | TCATTCAAGTAAAAAATTAT+TGG | - | chr4.4:19467974-19467993 | MS.gene35141:intron | 15.0% |
| !!! | CGATTTTTATGTTTAATTAT+TGG | - | chr4.4:19469944-19469963 | MS.gene35141:CDS | 15.0% |
| !! | AAAATTGAATAAAATGATGG+CGG | - | chr4.4:19468067-19468086 | MS.gene35141:intron | 20.0% |
| !! | AATAAGCAGAAAACAATTTA+TGG | + | chr4.4:19467790-19467809 | None:intergenic | 20.0% |
| !! | AGATCAAATTGAACATAATA+TGG | + | chr4.4:19470314-19470333 | None:intergenic | 20.0% |
| !! | TAGACGAAATATTAATATGA+CGG | + | chr4.4:19469124-19469143 | None:intergenic | 20.0% |
| !! | TCTCAAAAACATAAAATAAC+TGG | + | chr4.4:19469260-19469279 | None:intergenic | 20.0% |
| !! | TGTAAAAATTAGAAGATTCA+GGG | - | chr4.4:19467948-19467967 | MS.gene35141:intron | 20.0% |
| !! | TTATGTTTAATTATTGGTGT+TGG | - | chr4.4:19469950-19469969 | MS.gene35141:CDS | 20.0% |
| !! | TTGTAAAAATTAGAAGATTC+AGG | - | chr4.4:19467947-19467966 | MS.gene35141:intron | 20.0% |
| !! | TTTGAAAAAAATTGGAAAGT+TGG | - | chr4.4:19469747-19469766 | MS.gene35141:intron | 20.0% |
| !!! | AAACTAGTTCTATATTGATT+TGG | + | chr4.4:19470243-19470262 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTTAGACCTAT+AGG | - | chr4.4:19467903-19467922 | MS.gene35141:intron | 20.0% |
| !!! | AAGTTTTTTTTCATTCTGAA+GGG | - | chr4.4:19469029-19469048 | MS.gene35141:intron | 20.0% |
| !!! | AATTGATTTTTAGACCTATA+GGG | - | chr4.4:19467904-19467923 | MS.gene35141:intron | 20.0% |
| !!! | ACAATTGCTTCTTTTTTATA+TGG | - | chr4.4:19468968-19468987 | MS.gene35141:intron | 20.0% |
| !!! | ATAACTGGCAATTTTTAAAA+TGG | + | chr4.4:19469245-19469264 | None:intergenic | 20.0% |
| !!! | CCATAAAAATTTAGAACAAA+TGG | + | chr4.4:19468478-19468497 | None:intergenic | 20.0% |
| !!! | CCATCATTTTATTCAATTTT+GGG | + | chr4.4:19468067-19468086 | None:intergenic | 20.0% |
| !!! | CCATTTGTTCTAAATTTTTA+TGG | - | chr4.4:19468475-19468494 | MS.gene35141:intron | 20.0% |
| !!! | TACAATTTTTGTTAACATAG+AGG | + | chr4.4:19470366-19470385 | None:intergenic | 20.0% |
| ! | AACAGAGTATAACAAGAAAA+TGG | - | chr4.4:19470453-19470472 | MS.gene35141:intron | 25.0% |
| ! | AATAAGACATAGTAGAAACA+AGG | + | chr4.4:19468867-19468886 | None:intergenic | 25.0% |
| ! | ATAGTAGTATAATTGAACAG+AGG | + | chr4.4:19468892-19468911 | None:intergenic | 25.0% |
| ! | ATGATGATAAACAATGATGA+TGG | + | chr4.4:19469298-19469317 | None:intergenic | 25.0% |
| ! | ATTATAAAGACACGTAAACT+GGG | + | chr4.4:19470066-19470085 | None:intergenic | 25.0% |
| ! | CCCAAAATTGAATAAAATGA+TGG | - | chr4.4:19468064-19468083 | MS.gene35141:intron | 25.0% |
| ! | CTAACTTTCTTCTATAGTTA+CGG | - | chr4.4:19467740-19467759 | MS.gene35141:intron | 25.0% |
| ! | TAACAAAAATTGTATCTGAC+AGG | - | chr4.4:19470372-19470391 | MS.gene35141:intron | 25.0% |
| ! | TACATCATAAACAAAGAACA+AGG | + | chr4.4:19468407-19468426 | None:intergenic | 25.0% |
| ! | TTACAATATATTTGGCATTG+TGG | - | chr4.4:19468912-19468931 | MS.gene35141:intron | 25.0% |
| ! | TTCAAAATTACTGTGTTTAC+TGG | - | chr4.4:19469006-19469025 | MS.gene35141:intron | 25.0% |
| !! | ACCATTTGTTGATTAACAAT+TGG | - | chr4.4:19468744-19468763 | MS.gene35141:intron | 25.0% |
| !! | GAATTTTGTCAAAACTGTTT+AGG | - | chr4.4:19469611-19469630 | MS.gene35141:intron | 25.0% |
| !! | GCCATCATTTTATTCAATTT+TGG | + | chr4.4:19468068-19468087 | None:intergenic | 25.0% |
| !!! | AACTGTTTAGGTTTTTAATG+TGG | - | chr4.4:19469623-19469642 | MS.gene35141:intron | 25.0% |
| !!! | ATCAGTTTTTTGACTCATTT+AGG | - | chr4.4:19469902-19469921 | MS.gene35141:CDS | 25.0% |
| !!! | GAAGTTTTTTTTCATTCTGA+AGG | - | chr4.4:19469028-19469047 | MS.gene35141:intron | 25.0% |
| !!! | TATTTTACGGATTTTGACTT+AGG | - | chr4.4:19468680-19468699 | MS.gene35141:intron | 25.0% |
| !!! | TCAGTTTTTTGACTCATTTA+GGG | - | chr4.4:19469903-19469922 | MS.gene35141:CDS | 25.0% |
| !!! | TTATTCAATTTTGGGTCTAA+GGG | + | chr4.4:19468059-19468078 | None:intergenic | 25.0% |
| !!! | TTTAATTTTCAGAAGCTCTT+CGG | - | chr4.4:19467877-19467896 | MS.gene35141:intron | 25.0% |
| !!! | TTTATTCAATTTTGGGTCTA+AGG | + | chr4.4:19468060-19468079 | None:intergenic | 25.0% |
| AAGAAGTAAAAGAAAGCAGT+GGG | + | chr4.4:19468364-19468383 | None:intergenic | 30.0% | |
| ATAACCTAGAAATTCCAAAG+TGG | + | chr4.4:19469801-19469820 | None:intergenic | 30.0% | |
| ATCATAAACAAAGAACAAGG+AGG | + | chr4.4:19468404-19468423 | None:intergenic | 30.0% | |
| CAACCATAATAACACAATTC+AGG | + | chr4.4:19469456-19469475 | None:intergenic | 30.0% | |
| GATTATAAAGACACGTAAAC+TGG | + | chr4.4:19470067-19470086 | None:intergenic | 30.0% | |
| GCCAATTGTTAATCAACAAA+TGG | + | chr4.4:19468748-19468767 | None:intergenic | 30.0% | |
| TAAACATGTTTGAAGATGAG+TGG | + | chr4.4:19468800-19468819 | None:intergenic | 30.0% | |
| TAACCTATCTGTCATATACA+TGG | - | chr4.4:19470476-19470495 | MS.gene35141:intron | 30.0% | |
| TAGACCTATAGGGATATTAA+TGG | - | chr4.4:19467914-19467933 | MS.gene35141:intron | 30.0% | |
| TAGTAATGAACCAGTAATTG+TGG | + | chr4.4:19468573-19468592 | None:intergenic | 30.0% | |
| TCAATTTGATCTGAGCAAAA+AGG | - | chr4.4:19470322-19470341 | MS.gene35141:intron | 30.0% | |
| ! | ATGTTTCAAAAATTGGCTCA+GGG | - | chr4.4:19469589-19469608 | MS.gene35141:intron | 30.0% |
| ! | CAACCTGAATTGTGTTATTA+TGG | - | chr4.4:19469450-19469469 | MS.gene35141:intron | 30.0% |
| ! | GTAAAACAATGTTGCTTCAT+GGG | + | chr4.4:19469169-19469188 | None:intergenic | 30.0% |
| ! | TATGTTTCAAAAATTGGCTC+AGG | - | chr4.4:19469588-19469607 | MS.gene35141:intron | 30.0% |
| ! | TGTAAAACAATGTTGCTTCA+TGG | + | chr4.4:19469170-19469189 | None:intergenic | 30.0% |
| ! | TTAATTTTCAGAAGCTCTTC+GGG | - | chr4.4:19467878-19467897 | MS.gene35141:intron | 30.0% |
| !! | AATTCAGGTTGAATATGCAA+GGG | + | chr4.4:19469441-19469460 | None:intergenic | 30.0% |
| !! | TGGATGGTATTTTAGAAAAC+TGG | + | chr4.4:19470130-19470149 | None:intergenic | 30.0% |
| !! | TTCTAAAATACCATCCATTG+TGG | - | chr4.4:19470133-19470152 | MS.gene35141:intron | 30.0% |
| !!! | TTTTTTTTCATTCTGAAGGG+AGG | - | chr4.4:19469032-19469051 | MS.gene35141:intron | 30.0% |
| AAAAGTAGCACCACAATTAC+TGG | - | chr4.4:19468560-19468579 | MS.gene35141:intron | 35.0% | |
| AAGAAGTCATGATCAAGACA+TGG | + | chr4.4:19469670-19469689 | None:intergenic | 35.0% | |
| AGAAGTAAAAGAAAGCAGTG+GGG | + | chr4.4:19468363-19468382 | None:intergenic | 35.0% | |
| CAAGAAGTAAAAGAAAGCAG+TGG | + | chr4.4:19468365-19468384 | None:intergenic | 35.0% | |
| CACTCCATTAATATCCCTAT+AGG | + | chr4.4:19467921-19467940 | None:intergenic | 35.0% | |
| CCATTGTCAGGAATTTAAAC+AGG | + | chr4.4:19470279-19470298 | None:intergenic | 35.0% | |
| CCTGTTTAAATTCCTGACAA+TGG | - | chr4.4:19470276-19470295 | MS.gene35141:intron | 35.0% | |
| CTTTCTGTGTTCATACAGAT+CGG | - | chr4.4:19469353-19469372 | MS.gene35141:intron | 35.0% | |
| GACATAGTAGAAACAAGGAT+AGG | + | chr4.4:19468862-19468881 | None:intergenic | 35.0% | |
| TCAAAAGAACGCTTCTTCTT+CGG | - | chr4.4:19467644-19467663 | MS.gene35141:CDS | 35.0% | |
| TGAGTATGAAGAAACTGATG+AGG | - | chr4.4:19470571-19470590 | MS.gene35141:CDS | 35.0% | |
| TGGAAAGTTGGAATTCATTG+CGG | - | chr4.4:19469759-19469778 | MS.gene35141:intron | 35.0% | |
| TTATGACCAATGCGCAATTT+AGG | + | chr4.4:19468004-19468023 | None:intergenic | 35.0% | |
| TTTCTTCTATAGTTACGGTC+TGG | - | chr4.4:19467745-19467764 | MS.gene35141:intron | 35.0% | |
| ! | AATGCTGCATTGAGTTTTTC+AGG | - | chr4.4:19468206-19468225 | MS.gene35141:intron | 35.0% |
| ! | GCGCATTGGTCATAATAAAA+AGG | - | chr4.4:19468009-19468028 | MS.gene35141:intron | 35.0% |
| ! | GTGGAAAACAATGACTTTTG+AGG | - | chr4.4:19469394-19469413 | MS.gene35141:intron | 35.0% |
| ! | TATACTATCGCGTAAGTTGA+TGG | - | chr4.4:19468646-19468665 | MS.gene35141:intron | 35.0% |
| !! | AAGACCACTTTGGAATTTCT+AGG | - | chr4.4:19469794-19469813 | MS.gene35141:intron | 35.0% |
| !! | ATACTATCGCGTAAGTTGAT+GGG | - | chr4.4:19468647-19468666 | MS.gene35141:intron | 35.0% |
| !! | CAATTCAGGTTGAATATGCA+AGG | + | chr4.4:19469442-19469461 | None:intergenic | 35.0% |
| !! | CTTATTTTCACAAGCTCTTC+AGG | - | chr4.4:19467804-19467823 | MS.gene35141:CDS | 35.0% |
| !! | TTTGTTTTCTGATGCTTTGC+AGG | - | chr4.4:19470541-19470560 | MS.gene35141:intron | 35.0% |
| !!! | AGGTAGAGTGTATTTTGACT+TGG | - | chr4.4:19468700-19468719 | MS.gene35141:intron | 35.0% |
| !!! | GTTCTTTTTTTGCACTGCTT+TGG | + | chr4.4:19468305-19468324 | None:intergenic | 35.0% |
| !!! | GTTTTTCAGGAAACTAGTGT+TGG | - | chr4.4:19468219-19468238 | MS.gene35141:intron | 35.0% |
| !!! | TAGAGTGTATTTTGACTTGG+AGG | - | chr4.4:19468703-19468722 | MS.gene35141:intron | 35.0% |
| !!! | TGTATTTTGACTTGGAGGAA+TGG | - | chr4.4:19468708-19468727 | MS.gene35141:intron | 35.0% |
| AACATAGAGGTCAACCAAAG+TGG | + | chr4.4:19470353-19470372 | None:intergenic | 40.0% | |
| AAGTAAAAGAAAGCAGTGGG+GGG | + | chr4.4:19468361-19468380 | None:intergenic | 40.0% | |
| ACGCGATAGTATAACTCCAA+AGG | + | chr4.4:19468639-19468658 | None:intergenic | 40.0% | |
| ACTGATCTGTGTGTTTCCTT+TGG | - | chr4.4:19468620-19468639 | MS.gene35141:intron | 40.0% | |
| AGGAGAGTAGAGAAAGTGAA+AGG | + | chr4.4:19467687-19467706 | None:intergenic | 40.0% | |
| AGGTAAGTTTCCACAATGGA+TGG | + | chr4.4:19470146-19470165 | None:intergenic | 40.0% | |
| ATACTTGACACTCCATTGTC+AGG | + | chr4.4:19470291-19470310 | None:intergenic | 40.0% | |
| ATCCATTGTGGAAACTTACC+TGG | - | chr4.4:19470145-19470164 | MS.gene35141:intron | 40.0% | |
| ATTAACACGAGTACCTTTGC+AGG | - | chr4.4:19469977-19469996 | MS.gene35141:CDS | 40.0% | |
| CAAGTACTACAAACCTGCAA+AGG | + | chr4.4:19469993-19470012 | None:intergenic | 40.0% | |
| CCAAATAAGAGTCAGTTCAC+TGG | + | chr4.4:19470502-19470521 | None:intergenic | 40.0% | |
| CCAACAATGCAATTATGCCT+TGG | - | chr4.4:19468033-19468052 | MS.gene35141:intron | 40.0% | |
| CCAAGGCATAATTGCATTGT+TGG | + | chr4.4:19468036-19468055 | None:intergenic | 40.0% | |
| CGATCTGTATGAACACAGAA+AGG | + | chr4.4:19469355-19469374 | None:intergenic | 40.0% | |
| GAAGTAAAAGAAAGCAGTGG+GGG | + | chr4.4:19468362-19468381 | None:intergenic | 40.0% | |
| GCAAAAAGGAAACACCACTT+TGG | - | chr4.4:19470336-19470355 | MS.gene35141:intron | 40.0% | |
| GGAGAGTAGAGAAAGTGAAA+GGG | + | chr4.4:19467686-19467705 | None:intergenic | 40.0% | |
| TAGCTTCAGGTGTTAGTAGT+GGG | - | chr4.4:19468126-19468145 | MS.gene35141:intron | 40.0% | |
| TCCATTGTGGAAACTTACCT+GGG | - | chr4.4:19470146-19470165 | MS.gene35141:intron | 40.0% | |
| TCTGTATGAACACAGAAAGG+AGG | + | chr4.4:19469352-19469371 | None:intergenic | 40.0% | |
| TGCTCAACTCTTGAACTTGA+GGG | + | chr4.4:19468776-19468795 | None:intergenic | 40.0% | |
| TGGCCATGTATATGACAGAT+AGG | + | chr4.4:19470482-19470501 | None:intergenic | 40.0% | |
| TTGCTCAACTCTTGAACTTG+AGG | + | chr4.4:19468777-19468796 | None:intergenic | 40.0% | |
| TTGGCGATCAAATCGAATGA+GGG | - | chr4.4:19468238-19468257 | MS.gene35141:intron | 40.0% | |
| TTGTCAGTTGCGATGTTTGA+CGG | - | chr4.4:19469541-19469560 | MS.gene35141:intron | 40.0% | |
| ! | ACAAGGGTTTTGCTGCATTA+AGG | - | chr4.4:19468515-19468534 | MS.gene35141:intron | 40.0% |
| ! | ACTCTCCTTTTCGTTCACAA+GGG | - | chr4.4:19467699-19467718 | MS.gene35141:intron | 40.0% |
| ! | CCAGTGAACTGACTCTTATT+TGG | - | chr4.4:19470499-19470518 | MS.gene35141:intron | 40.0% |
| ! | CTTTTCCCTTGTGAACGAAA+AGG | + | chr4.4:19467707-19467726 | None:intergenic | 40.0% |
| ! | GGGGGTTCTGTTGTATTTTA+CGG | - | chr4.4:19468667-19468686 | MS.gene35141:intron | 40.0% |
| ! | TACTCTCCTTTTCGTTCACA+AGG | - | chr4.4:19467698-19467717 | MS.gene35141:intron | 40.0% |
| !! | CATTCTGAAGGGAGGATTTT+CGG | - | chr4.4:19469040-19469059 | MS.gene35141:intron | 40.0% |
| !! | TACTATCGCGTAAGTTGATG+GGG | - | chr4.4:19468648-19468667 | MS.gene35141:intron | 40.0% |
| !! | TCACGCATTGACTTAACATC+TGG | + | chr4.4:19469087-19469106 | None:intergenic | 40.0% |
| AACTGATGATCATGCAAGCC+TGG | + | chr4.4:19469889-19469908 | None:intergenic | 45.0% | |
| AGCAGAACTGAAGACCACTT+TGG | - | chr4.4:19469784-19469803 | MS.gene35141:intron | 45.0% | |
| AGCTTCAGGTGTTAGTAGTG+GGG | - | chr4.4:19468127-19468146 | MS.gene35141:intron | 45.0% | |
| AGGGAATGAAGAGATCGTTG+CGG | - | chr4.4:19468257-19468276 | MS.gene35141:intron | 45.0% | |
| CTACTAACACCTGAAGCTAG+AGG | + | chr4.4:19468125-19468144 | None:intergenic | 45.0% | |
| CTAGCTTCAGGTGTTAGTAG+TGG | - | chr4.4:19468125-19468144 | MS.gene35141:intron | 45.0% | |
| GCTCAACTCTTGAACTTGAG+GGG | + | chr4.4:19468775-19468794 | None:intergenic | 45.0% | |
| GGAAGACCTAAATTGCGCAT+TGG | - | chr4.4:19467995-19468014 | MS.gene35141:intron | 45.0% | |
| GTTGGCGATCAAATCGAATG+AGG | - | chr4.4:19468237-19468256 | MS.gene35141:intron | 45.0% | |
| TCCCAGGTAAGTTTCCACAA+TGG | + | chr4.4:19470150-19470169 | None:intergenic | 45.0% | |
| TCTGATGCTTTGCAGGAAAG+CGG | - | chr4.4:19470548-19470567 | MS.gene35141:intron | 45.0% | |
| TGGAAACTTACCTGGGACTA+AGG | - | chr4.4:19470153-19470172 | MS.gene35141:intron | 45.0% | |
| TGTGTTCATACAGATCGGCA+AGG | - | chr4.4:19469358-19469377 | MS.gene35141:intron | 45.0% | |
| ! | CACGTAAACTGGGTGCTATA+AGG | + | chr4.4:19470056-19470075 | None:intergenic | 45.0% |
| !! | AATTTTGGGTCTAAGGGCCA+AGG | + | chr4.4:19468053-19468072 | None:intergenic | 45.0% |
| !! | ACTATCGCGTAAGTTGATGG+GGG | - | chr4.4:19468649-19468668 | MS.gene35141:intron | 45.0% |
| !! | AGAGAAAGTGAAAGGGTACC+CGG | + | chr4.4:19467679-19467698 | None:intergenic | 45.0% |
| !! | AGCGTTCTTTTGAGAGTGAG+AGG | + | chr4.4:19467637-19467656 | None:intergenic | 45.0% |
| !! | AATAAAAAAAATTAAAGAAA+AGG | - | chr4.4:19470096-19470115 | MS.gene35141:intron | 5.0% |
| !! | ATAAAAAAAATTAAAGAAAA+GGG | - | chr4.4:19470097-19470116 | MS.gene35141:intron | 5.0% |
| AAAGCAGTGGGGGGTTTCTT+CGG | + | chr4.4:19468352-19468371 | None:intergenic | 50.0% | |
| AAGCCTGGAATTCCAACCAG+AGG | + | chr4.4:19469874-19469893 | None:intergenic | 50.0% | |
| AGCTTCTTCTCGATAGCAGC+AGG | + | chr4.4:19470189-19470208 | None:intergenic | 50.0% | |
| AGTTGCAGAACTGTCTCCTC+TGG | - | chr4.4:19469855-19469874 | MS.gene35141:CDS | 50.0% | |
| ATACAGATCGGCAAGGCATG+CGG | - | chr4.4:19469365-19469384 | MS.gene35141:intron | 50.0% | |
| TCTCCTCTGGTTGGAATTCC+AGG | - | chr4.4:19469868-19469887 | MS.gene35141:CDS | 50.0% | |
| TGTGAGTTTCAACCGTGTCC+AGG | - | chr4.4:19468093-19468112 | MS.gene35141:intron | 50.0% | |
| ! | AGGTCTACACCTCTAGCTTC+AGG | - | chr4.4:19468113-19468132 | MS.gene35141:intron | 50.0% |
| ! | TAGAGGTGTAGACCTGGACA+CGG | + | chr4.4:19468108-19468127 | None:intergenic | 50.0% |
| ! | TGAAGCTAGAGGTGTAGACC+TGG | + | chr4.4:19468114-19468133 | None:intergenic | 50.0% |
| CTTTCACGTGCCTTAGTCCC+AGG | + | chr4.4:19470166-19470185 | None:intergenic | 55.0% | |
| GCAGAACTGTCTCCTCTGGT+TGG | - | chr4.4:19469859-19469878 | MS.gene35141:CDS | 55.0% | |
| !! | GAAAGTGAAAGGGTACCCGG+AGG | + | chr4.4:19467676-19467695 | None:intergenic | 55.0% |
| GACTTGGAGGAATGGCGCAG+AGG | - | chr4.4:19468716-19468735 | MS.gene35141:intron | 60.0% | |
| GCAAGGCATGCGGAGAGAAG+TGG | - | chr4.4:19469375-19469394 | MS.gene35141:intron | 60.0% | |
| TCTTCTTCGGCCTCCACCTC+CGG | - | chr4.4:19467657-19467676 | MS.gene35141:intron | 60.0% | |
| TTGGAGGAATGGCGCAGAGG+AGG | - | chr4.4:19468719-19468738 | MS.gene35141:intron | 60.0% | |
| !! | AGTGAAAGGGTACCCGGAGG+TGG | + | chr4.4:19467673-19467692 | None:intergenic | 60.0% |
| CTTCTTCGGCCTCCACCTCC+GGG | - | chr4.4:19467658-19467677 | MS.gene35141:intron | 65.0% | |
| !! | GAAAGGGTACCCGGAGGTGG+AGG | + | chr4.4:19467670-19467689 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19467615 | 19470613 | 19467615 | ID=MS.gene35141 |
| chr4.4 | mRNA | 19467615 | 19470613 | 19467615 | ID=MS.gene35141.t1;Parent=MS.gene35141 |
| chr4.4 | exon | 19470549 | 19470613 | 19470549 | ID=MS.gene35141.t1.exon1;Parent=MS.gene35141.t1 |
| chr4.4 | CDS | 19470549 | 19470613 | 19470549 | ID=cds.MS.gene35141.t1;Parent=MS.gene35141.t1 |
| chr4.4 | exon | 19469845 | 19470000 | 19469845 | ID=MS.gene35141.t1.exon2;Parent=MS.gene35141.t1 |
| chr4.4 | CDS | 19469845 | 19470000 | 19469845 | ID=cds.MS.gene35141.t1;Parent=MS.gene35141.t1 |
| chr4.4 | exon | 19469121 | 19469178 | 19469121 | ID=MS.gene35141.t1.exon3;Parent=MS.gene35141.t1 |
| chr4.4 | CDS | 19469121 | 19469178 | 19469121 | ID=cds.MS.gene35141.t1;Parent=MS.gene35141.t1 |
| chr4.4 | exon | 19468813 | 19468857 | 19468813 | ID=MS.gene35141.t1.exon4;Parent=MS.gene35141.t1 |
| chr4.4 | CDS | 19468813 | 19468857 | 19468813 | ID=cds.MS.gene35141.t1;Parent=MS.gene35141.t1 |
| chr4.4 | exon | 19467754 | 19467834 | 19467754 | ID=MS.gene35141.t1.exon5;Parent=MS.gene35141.t1 |
| chr4.4 | CDS | 19467754 | 19467834 | 19467754 | ID=cds.MS.gene35141.t1;Parent=MS.gene35141.t1 |
| chr4.4 | exon | 19467615 | 19467665 | 19467615 | ID=MS.gene35141.t1.exon6;Parent=MS.gene35141.t1 |
| chr4.4 | CDS | 19467615 | 19467665 | 19467615 | ID=cds.MS.gene35141.t1;Parent=MS.gene35141.t1 |
| Gene Sequence |
| Protein sequence |
