AlfalfaGEDB | MS.gene35145

M. sativa cultivar XinJiangDaYe / MS.gene35145

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35145.t1	XP_013457349.1	79.1	158	33	0	1	158	1	158	2.40E-59	238.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35145.t1	O64703	34.9	172	90	3	1	150	1	172	1.8e-18	94.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35145.t1	A0A072UZY5	79.1	158	33	0	1	158	1	158	1.8e-59	238.4

TFs/TRs:

Gene ID	Type	Classification
MS.gene35145.t1	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35145.t1	MTR_4g094632	93.038	158	11	0	1	158	1	158	3.71e-105	298
MS.gene35145.t1	MTR_4g094638	66.854	178	53	2	1	172	1	178	1.12e-71	214
MS.gene35145.t1	MTR_8g079502	42.073	164	83	3	1	152	1	164	7.46e-33	115
MS.gene35145.t1	MTR_1g047550	39.665	179	95	4	1	166	1	179	3.90e-32	114
MS.gene35145.t1	MTR_4g131030	38.122	181	83	3	1	152	1	181	2.12e-30	110
MS.gene35145.t1	MTR_8g046350	38.037	163	85	5	1	152	1	158	7.61e-30	107
MS.gene35145.t1	MTR_3g080940	39.634	164	82	4	1	147	8	171	7.81e-29	106
MS.gene35145.t1	MTR_8g051580	40.244	164	86	3	1	152	1	164	1.01e-28	105
MS.gene35145.t1	MTR_1g063160	38.415	164	89	3	1	152	1	164	2.74e-28	103
MS.gene35145.t1	MTR_1g054265	39.024	164	88	3	1	152	1	164	2.83e-27	100
MS.gene35145.t1	MTR_5g045560	43.478	115	62	2	1	113	8	121	2.82e-24	95.1
MS.gene35145.t1	MTR_3g052920	43.363	113	61	2	2	112	9	120	3.80e-24	94.7
MS.gene35145.t1	MTR_1g106070	42.478	113	62	2	2	112	9	120	5.65e-24	92.8
MS.gene35145.t1	MTR_3g052870	34.503	171	100	4	2	167	9	172	5.66e-24	94.0
MS.gene35145.t1	MTR_1g108510	42.453	106	59	1	2	105	9	114	3.46e-23	92.0
MS.gene35145.t1	MTR_8g043650	44.340	106	57	1	2	105	9	114	4.18e-23	92.0
MS.gene35145.t1	MTR_3g030770	40.157	127	67	2	2	126	9	128	6.96e-23	91.3
MS.gene35145.t1	MTR_1g108580	41.509	106	60	1	2	105	9	114	9.46e-23	90.9
MS.gene35145.t1	MTR_1g105920	42.478	113	62	2	2	112	9	120	9.74e-23	90.9
MS.gene35145.t1	MTR_1g105910	43.396	106	58	1	2	105	9	114	2.19e-22	90.1
MS.gene35145.t1	MTR_2g093190	41.509	106	60	1	2	105	9	114	1.57e-21	87.8
MS.gene35145.t1	MTR_1g012570	36.429	140	80	2	2	139	9	141	2.90e-21	87.0
MS.gene35145.t1	MTR_5g066180	39.130	138	68	3	1	131	1	129	5.66e-21	86.3
MS.gene35145.t1	MTR_5g053390	42.453	106	59	1	2	105	9	114	9.40e-21	85.9
MS.gene35145.t1	MTR_2g030740	39.823	113	65	2	2	112	9	120	2.15e-20	84.7
MS.gene35145.t1	MTR_2g105290	50.000	72	36	0	1	72	11	82	2.43e-20	83.2
MS.gene35145.t1	MTR_7g028448	34.667	150	82	5	17	158	27	168	1.14e-19	81.3
MS.gene35145.t1	MTR_4g036915	34.667	150	82	5	17	158	27	168	1.14e-19	81.3
MS.gene35145.t1	MTR_0121s0100	39.604	101	59	1	2	100	9	109	2.37e-19	79.7
MS.gene35145.t1	MTR_0121s0080	38.281	128	70	2	2	127	9	129	4.60e-19	81.3
MS.gene35145.t1	MTR_8g086290	46.479	71	38	0	2	72	12	82	4.87e-19	80.1
MS.gene35145.t1	MTR_1g077360	39.806	103	60	1	2	102	9	111	9.12e-19	80.5
MS.gene35145.t1	MTR_1g075600	39.048	105	62	1	2	104	9	113	1.06e-18	80.5
MS.gene35145.t1	MTR_3g030780	37.383	107	65	1	2	106	9	115	1.76e-18	77.4
MS.gene35145.t1	MTR_2g085250	38.393	112	66	2	2	111	9	119	4.83e-18	78.6
MS.gene35145.t1	MTR_5g055100	38.393	112	66	2	2	111	9	119	4.94e-18	78.6
MS.gene35145.t1	MTR_2g085280	38.393	112	66	2	2	111	9	119	5.31e-18	78.6
MS.gene35145.t1	MTR_2g009890	50.725	69	34	0	1	69	1	69	1.11e-17	78.2
MS.gene35145.t1	MTR_5g032520	36.029	136	79	4	1	132	1	132	2.15e-17	76.6
MS.gene35145.t1	MTR_5g031000	49.275	69	35	0	1	69	1	69	3.73e-17	75.9
MS.gene35145.t1	MTR_5g031000	49.275	69	35	0	1	69	1	69	3.74e-17	76.3
MS.gene35145.t1	MTR_7g075870	28.161	174	112	3	1	171	1	164	5.59e-17	75.5
MS.gene35145.t1	MTR_3g102570	33.813	139	79	4	1	134	1	131	8.03e-17	76.6
MS.gene35145.t1	MTR_4g127140	52.778	72	34	0	1	72	11	82	9.16e-17	74.3
MS.gene35145.t1	MTR_5g032150	35.294	136	80	4	1	132	1	132	1.63e-16	74.3
MS.gene35145.t1	MTR_4g093970	30.726	179	103	5	1	171	27	192	2.62e-16	73.9
MS.gene35145.t1	MTR_1g105905	39.583	96	56	1	11	104	1	96	3.06e-16	73.6
MS.gene35145.t1	MTR_0003s0590	49.275	69	35	0	1	69	1	69	3.78e-16	73.9
MS.gene35145.t1	MTR_5g066960	53.333	60	28	0	1	60	1	60	4.22e-16	68.9
MS.gene35145.t1	MTR_4g109830	35.537	121	74	3	1	120	1	118	4.53e-16	73.2
MS.gene35145.t1	MTR_3g113030	35.484	124	77	2	1	124	1	121	5.01e-16	73.2
MS.gene35145.t1	MTR_1g053070	47.826	69	36	0	1	69	1	69	1.36e-15	72.4
MS.gene35145.t1	MTR_7g075870	28.000	175	112	4	1	171	1	165	1.68e-15	71.2
MS.gene35145.t1	MTR_7g016630	32.258	124	72	3	1	120	1	116	3.14e-15	71.2
MS.gene35145.t1	MTR_8g033270	52.542	59	28	0	1	59	1	59	5.09e-15	70.9
MS.gene35145.t1	MTR_5g021270	50.000	60	30	0	1	60	1	60	7.70e-15	70.1
MS.gene35145.t1	MTR_5g021270	50.000	60	30	0	1	60	1	60	7.89e-15	70.1
MS.gene35145.t1	MTR_5g046870	48.529	68	35	0	1	68	1	68	9.46e-15	67.0
MS.gene35145.t1	MTR_3g452380	44.928	69	38	0	1	69	16	84	1.50e-14	69.3
MS.gene35145.t1	MTR_1g101970	44.928	69	38	0	1	69	1	69	1.56e-14	68.2
MS.gene35145.t1	MTR_7g075850	33.871	124	70	2	1	119	1	117	1.84e-14	69.3
MS.gene35145.t1	MTR_4g093030	34.722	144	70	6	1	142	1	122	1.87e-14	67.4
MS.gene35145.t1	MTR_3g005530	42.029	69	40	0	1	69	1	69	2.65e-14	68.2
MS.gene35145.t1	MTR_1g038300	50.820	61	30	0	1	61	1	61	3.00e-14	68.2
MS.gene35145.t1	MTR_4g036050	34.234	111	70	3	1	110	1	109	3.23e-14	67.0
MS.gene35145.t1	MTR_4g036050	34.234	111	70	3	1	110	1	109	3.79e-14	67.4
MS.gene35145.t1	MTR_4g036050	34.234	111	70	3	1	110	1	109	3.87e-14	67.4
MS.gene35145.t1	MTR_7g016600	47.541	61	32	0	1	61	1	61	4.73e-14	68.2
MS.gene35145.t1	MTR_4g036050	34.234	111	70	3	1	110	1	109	4.79e-14	67.4
MS.gene35145.t1	MTR_1g029670	36.207	116	64	4	1	111	1	111	4.94e-14	67.0
MS.gene35145.t1	MTR_7g062350	36.364	99	61	1	10	106	29	127	6.09e-14	67.8
MS.gene35145.t1	MTR_6g081890	54.000	100	31	3	44	140	62	149	6.59e-14	66.2
MS.gene35145.t1	MTR_6g464720	49.180	61	31	0	1	61	1	61	7.72e-14	67.4
MS.gene35145.t1	MTR_3g088615	45.902	61	33	0	1	61	1	61	1.18e-13	65.9
MS.gene35145.t1	MTR_5g046790	44.262	61	34	0	1	61	1	61	1.21e-13	66.2
MS.gene35145.t1	MTR_8g033220	42.029	69	40	0	1	69	1	69	1.25e-13	66.6
MS.gene35145.t1	MTR_4g102530	42.029	69	40	0	1	69	1	69	1.35e-13	66.2
MS.gene35145.t1	MTR_8g033220	42.029	69	40	0	1	69	1	69	1.40e-13	66.6
MS.gene35145.t1	MTR_2g461710	45.763	59	32	0	1	59	1	59	1.46e-13	62.4
MS.gene35145.t1	MTR_8g087860	31.092	119	79	1	1	119	17	132	1.50e-13	66.6
MS.gene35145.t1	MTR_8g066260	41.429	70	40	1	1	69	1	70	1.50e-13	66.6
MS.gene35145.t1	MTR_6g015975	44.286	70	38	1	1	69	1	70	1.81e-13	66.6
MS.gene35145.t1	MTR_3g067910	39.326	89	52	1	19	105	7	95	1.95e-13	63.5
MS.gene35145.t1	MTR_4g109810	43.662	71	40	0	1	71	1	71	2.05e-13	66.2
MS.gene35145.t1	MTR_8g097090	47.541	61	32	0	1	61	1	61	2.81e-13	65.9
MS.gene35145.t1	MTR_3g084980	47.541	61	32	0	1	61	1	61	3.11e-13	65.9
MS.gene35145.t1	MTR_1g041615	37.719	114	63	3	17	125	21	131	5.97e-13	62.8
MS.gene35145.t1	MTR_2g017865	40.580	69	41	0	1	69	16	84	1.31e-12	64.3
MS.gene35145.t1	MTR_3g109930	31.818	154	83	5	17	154	17	164	1.95e-12	62.4
MS.gene35145.t1	MTR_3g067875	50.909	55	27	0	11	65	1	55	2.48e-12	59.7
MS.gene35145.t1	MTR_5g041650	48.148	54	28	0	1	54	38	91	5.91e-12	63.2
MS.gene35145.t1	MTR_4g084740	43.662	71	39	1	1	70	1	71	9.02e-12	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35145.t1	AT2G34440	38.372	172	84	4	1	150	1	172	5.54e-30	108
MS.gene35145.t1	AT3G66656	43.750	112	55	2	1	105	1	111	1.70e-24	94.4
MS.gene35145.t1	AT2G24840	38.843	121	60	2	1	114	62	175	2.26e-22	90.5
MS.gene35145.t1	AT1G28460	40.517	116	65	2	2	113	8	123	1.54e-21	86.7
MS.gene35145.t1	AT1G29962	37.692	130	70	3	2	120	8	137	1.36e-20	84.3
MS.gene35145.t1	AT3G57230	37.815	119	70	2	1	119	1	115	1.92e-19	80.1
MS.gene35145.t1	AT4G24540	41.441	111	55	3	1	104	1	108	5.08e-19	80.9
MS.gene35145.t1	AT3G57230	37.815	119	70	2	1	119	1	115	7.74e-19	80.9
MS.gene35145.t1	AT3G57230	37.815	119	70	2	1	119	1	115	7.74e-19	80.9
MS.gene35145.t1	AT2G22540	35.542	166	93	6	1	156	1	162	9.43e-19	80.5
MS.gene35145.t1	AT2G22540	35.542	166	93	6	1	156	1	162	9.43e-19	80.5
MS.gene35145.t1	AT1G28450	39.496	119	65	3	2	113	8	126	1.01e-18	79.3
MS.gene35145.t1	AT1G01530	33.775	151	82	3	1	134	6	155	2.10e-18	79.7
MS.gene35145.t1	AT4G37940	49.275	69	35	0	1	69	1	69	2.48e-18	79.3
MS.gene35145.t1	AT4G37940	49.275	69	35	0	1	69	1	69	3.41e-18	78.6
MS.gene35145.t1	AT5G60440	39.815	108	61	1	2	105	7	114	4.44e-18	79.7
MS.gene35145.t1	AT4G37940	49.275	69	35	0	1	69	1	69	9.49e-18	76.6
MS.gene35145.t1	AT1G65360	33.628	113	75	0	1	113	6	118	1.52e-17	77.0
MS.gene35145.t1	AT2G45660	32.174	115	75	1	1	115	1	112	1.68e-17	75.5
MS.gene35145.t1	AT1G47760	34.356	163	81	6	1	149	1	151	2.86e-17	75.5
MS.gene35145.t1	AT4G22950	33.775	151	89	3	1	146	1	145	3.79e-17	75.1
MS.gene35145.t1	AT2G45660	32.174	115	75	1	1	115	1	112	8.47e-17	75.1
MS.gene35145.t1	AT3G57390	49.275	69	35	0	1	69	1	69	8.90e-17	75.1
MS.gene35145.t1	AT3G57390	49.275	69	35	0	1	69	1	69	1.55e-16	75.1
MS.gene35145.t1	AT2G22540	60.000	55	22	0	1	55	1	55	1.57e-16	74.7
MS.gene35145.t1	AT4G22950	33.775	151	89	3	1	146	1	145	1.67e-16	74.3
MS.gene35145.t1	AT4G22950	33.775	151	89	3	1	146	1	145	1.67e-16	74.3
MS.gene35145.t1	AT1G71692	37.815	119	69	3	1	114	1	119	2.24e-16	73.6
MS.gene35145.t1	AT5G13790	38.235	102	63	0	1	102	1	102	2.52e-16	74.7
MS.gene35145.t1	AT5G13790	47.826	69	36	0	1	69	1	69	4.10e-16	73.9
MS.gene35145.t1	AT5G51870	46.377	69	37	0	1	69	1	69	4.78e-16	72.0
MS.gene35145.t1	AT4G36590	37.600	125	68	3	2	119	7	128	5.60e-16	73.2
MS.gene35145.t1	AT5G10140	52.542	59	28	0	1	59	1	59	6.93e-16	71.6
MS.gene35145.t1	AT5G10140	52.542	59	28	0	1	59	1	59	7.68e-16	71.6
MS.gene35145.t1	AT5G51870	46.377	69	37	0	1	69	1	69	7.85e-16	72.0
MS.gene35145.t1	AT5G51870	46.377	69	37	0	1	69	24	92	7.92e-16	72.0
MS.gene35145.t1	AT5G10140	52.542	59	28	0	1	59	1	59	8.68e-16	71.6
MS.gene35145.t1	AT2G14210	55.932	59	26	0	1	59	1	59	8.72e-16	72.4
MS.gene35145.t1	AT5G10140	52.542	59	28	0	1	59	1	59	9.73e-16	71.6
MS.gene35145.t1	AT2G14210	55.932	59	26	0	1	59	1	59	9.81e-16	72.4
MS.gene35145.t1	AT2G45650	47.826	69	36	0	1	69	1	69	1.03e-15	72.8
MS.gene35145.t1	AT5G23260	49.315	73	35	1	1	71	1	73	1.07e-15	72.8
MS.gene35145.t1	AT5G23260	49.315	73	35	1	1	71	17	89	1.21e-15	72.8
MS.gene35145.t1	AT5G23260	49.315	73	35	1	1	71	1	73	1.35e-15	72.0
MS.gene35145.t1	AT5G23260	49.315	73	35	1	1	71	17	89	1.36e-15	72.4
MS.gene35145.t1	AT5G51860	31.737	167	89	6	1	164	1	145	1.49e-15	71.6
MS.gene35145.t1	AT5G51870	46.377	69	37	0	1	69	1	69	1.56e-15	71.6
MS.gene35145.t1	AT5G51860	31.737	167	89	6	1	164	1	145	1.82e-15	71.2
MS.gene35145.t1	AT4G09960	31.250	128	68	2	1	108	1	128	2.05e-15	71.2
MS.gene35145.t1	AT4G09960	31.250	128	68	2	1	108	2	129	2.11e-15	71.6
MS.gene35145.t1	AT4G09960	31.250	128	68	2	1	108	1	128	2.13e-15	71.6
MS.gene35145.t1	AT5G51870	46.377	69	37	0	1	69	11	79	2.28e-15	71.2
MS.gene35145.t1	AT4G09960	31.250	128	68	2	1	108	11	138	2.35e-15	71.6
MS.gene35145.t1	AT4G09960	31.250	128	68	2	1	108	27	154	4.00e-15	71.2
MS.gene35145.t1	AT3G61120	52.632	57	27	0	1	57	1	57	5.03e-15	70.9
MS.gene35145.t1	AT5G20240	43.662	71	38	1	1	69	1	71	5.03e-15	68.9
MS.gene35145.t1	AT4G09960	31.250	128	68	2	1	108	96	223	5.38e-15	71.6
MS.gene35145.t1	AT5G65070	47.458	59	31	0	1	59	1	59	5.58e-15	68.6
MS.gene35145.t1	AT5G65060	49.153	59	30	0	1	59	1	59	6.54e-15	69.3
MS.gene35145.t1	AT3G54340	50.000	60	30	0	1	60	1	60	6.80e-15	70.1
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.63e-15	68.6
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.63e-15	68.6
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.63e-15	68.6
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.72e-15	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.72e-15	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.72e-15	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.72e-15	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	8.72e-15	68.2
MS.gene35145.t1	AT5G65070	47.458	59	31	0	1	59	1	59	1.12e-14	68.9
MS.gene35145.t1	AT5G20240	43.662	71	38	1	1	69	1	71	1.25e-14	68.9
MS.gene35145.t1	AT1G26310	45.714	70	37	1	1	69	1	70	1.40e-14	69.7
MS.gene35145.t1	AT3G30260	32.727	110	70	2	1	109	1	107	1.67e-14	69.3
MS.gene35145.t1	AT4G11880	49.180	61	31	0	1	61	1	61	1.71e-14	68.2
MS.gene35145.t1	AT4G11880	49.180	61	31	0	1	61	1	61	1.71e-14	68.2
MS.gene35145.t1	AT5G65060	49.153	59	30	0	1	59	1	59	1.92e-14	68.2
MS.gene35145.t1	AT5G65060	49.153	59	30	0	1	59	1	59	2.08e-14	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	2.69e-14	65.9
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	2.76e-14	67.8
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	2.76e-14	67.8
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	2.81e-14	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	2.81e-14	68.2
MS.gene35145.t1	AT5G62165	42.029	69	40	0	1	69	1	69	2.81e-14	68.2
MS.gene35145.t1	AT5G65050	49.153	59	30	0	1	59	1	59	3.61e-14	67.0
MS.gene35145.t1	AT5G65070	47.458	59	31	0	1	59	1	59	3.69e-14	68.2
MS.gene35145.t1	AT5G65070	47.458	59	31	0	1	59	1	59	4.17e-14	67.8
MS.gene35145.t1	AT2G22630	43.478	69	39	0	1	69	1	69	4.66e-14	67.8
MS.gene35145.t1	AT2G22630	43.478	69	39	0	1	69	1	69	4.66e-14	67.8
MS.gene35145.t1	AT5G65070	47.458	59	31	0	1	59	1	59	4.98e-14	67.8
MS.gene35145.t1	AT5G60910	33.094	139	76	5	1	135	1	126	5.26e-14	67.8
MS.gene35145.t1	AT4G11880	49.180	61	31	0	1	61	1	61	6.67e-14	67.4
MS.gene35145.t1	AT4G11880	49.180	61	31	0	1	61	1	61	6.67e-14	67.4
MS.gene35145.t1	AT1G69120	42.857	70	39	1	1	69	1	70	7.39e-14	67.4
MS.gene35145.t1	AT4G37435	45.763	59	32	0	1	59	1	59	7.78e-14	66.6
MS.gene35145.t1	AT2G03710	47.761	67	34	1	1	66	1	67	9.35e-14	66.2
MS.gene35145.t1	AT3G02310	47.541	61	32	0	1	61	1	61	1.26e-13	66.2
MS.gene35145.t1	AT1G72350	51.724	58	28	0	2	59	43	100	1.58e-13	66.2
MS.gene35145.t1	AT1G69120	32.231	121	78	3	1	120	1	118	1.62e-13	66.6
MS.gene35145.t1	AT5G15800	47.541	61	32	0	1	61	1	61	1.82e-13	66.6
MS.gene35145.t1	AT5G65050	49.153	59	30	0	1	59	1	59	2.00e-13	65.5
MS.gene35145.t1	AT5G65050	49.153	59	30	0	1	59	1	59	2.14e-13	65.5
MS.gene35145.t1	AT3G58780	46.774	62	33	0	1	62	16	77	2.38e-13	66.6
MS.gene35145.t1	AT5G65050	49.153	59	30	0	1	59	1	59	2.58e-13	65.1
MS.gene35145.t1	AT5G15800	47.541	61	32	0	1	61	1	61	2.60e-13	66.2
MS.gene35145.t1	AT3G02310	47.541	61	32	0	1	61	1	61	3.31e-13	65.9
MS.gene35145.t1	AT2G03710	47.761	67	34	1	1	66	1	67	3.52e-13	65.9
MS.gene35145.t1	AT2G03710	47.761	67	34	1	1	66	1	67	3.56e-13	65.9
MS.gene35145.t1	AT3G58780	29.630	162	107	3	1	162	16	170	4.13e-13	65.5
MS.gene35145.t1	AT3G58780	29.630	162	107	3	1	162	22	176	4.22e-13	65.5
MS.gene35145.t1	AT1G24260	49.153	59	30	0	1	59	1	59	4.34e-13	65.5
MS.gene35145.t1	AT1G24260	49.153	59	30	0	1	59	1	59	4.44e-13	65.5
MS.gene35145.t1	AT2G42830	42.029	69	40	0	1	69	16	84	4.48e-13	65.5
MS.gene35145.t1	AT1G24260	49.153	59	30	0	1	59	1	59	4.53e-13	65.5
MS.gene35145.t1	AT2G42830	42.029	69	40	0	1	69	16	84	4.57e-13	65.5
MS.gene35145.t1	AT3G58780	31.933	119	78	1	1	119	16	131	4.68e-13	65.9
MS.gene35145.t1	AT3G04100	31.481	108	69	1	2	104	14	121	5.30e-13	64.7
MS.gene35145.t1	AT3G58780	45.161	62	34	0	1	62	16	77	1.26e-12	63.9
MS.gene35145.t1	AT1G77980	45.070	71	38	1	1	70	1	71	1.86e-12	64.3
MS.gene35145.t1	AT4G18960	41.176	68	40	0	2	69	18	85	2.57e-12	63.5
MS.gene35145.t1	AT1G22130	47.541	61	32	0	1	61	1	61	2.70e-12	63.9
MS.gene35145.t1	AT1G54760	38.356	73	44	1	32	103	18	90	1.99e-11	59.7
MS.gene35145.t1	AT5G65080	47.273	55	29	0	1	55	8	62	2.63e-11	59.7
MS.gene35145.t1	AT5G65080	47.273	55	29	0	1	55	8	62	2.90e-11	59.7
MS.gene35145.t1	AT2G26320	35.211	71	44	1	1	69	17	87	3.72e-11	57.8
MS.gene35145.t1	AT1G77080	52.542	59	28	0	1	59	1	59	4.97e-11	58.9
MS.gene35145.t1	AT1G77080	52.542	59	28	0	1	59	1	59	6.32e-11	58.5

Find 30 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTGGTAAACCATTTGCTTT+TGG	0.303762	4.4:-19437134	MS.gene35145:CDS
TGACAAAGGTAAAGCCTCTA+TGG	0.376634	4.4:-19436964	MS.gene35145:CDS
AATGCTAGAGTTGGTATAGT+TGG	0.376951	4.4:-19437167	MS.gene35145:CDS
TCTAAATCAATGATGTGTAT+AGG	0.399337	4.4:+19436834	None:intergenic
GTGACTAATGAGTACCTTCA+TGG	0.419147	4.4:-19437092	MS.gene35145:CDS
TGATTTAGATTGTAAAAGAA+AGG	0.419907	4.4:-19436820	MS.gene35145:CDS
TTAGTCACAGCTTCGAAAGT+TGG	0.428007	4.4:+19437107	None:intergenic
GTCAACTTCATCCAACTCTT+CGG	0.435885	4.4:+19436983	None:intergenic
ATAATTAGTTTCAATAACAT+TGG	0.469629	4.4:+19436791	None:intergenic
GTTGGAGAACCAAAAGCAAA+TGG	0.473738	4.4:+19437125	None:intergenic
ATTCTTTGTAATGCTAGAGT+TGG	0.486006	4.4:-19437176	MS.gene35145:CDS
GATTTAGATTGTAAAAGAAA+GGG	0.486822	4.4:-19436819	MS.gene35145:CDS
GGTATAGTTGGATTTACCCC+TGG	0.497794	4.4:-19437155	MS.gene35145:CDS
TGTGTATAGGTTTCTTTGCA+AGG	0.525836	4.4:+19436847	None:intergenic
ATTCACCTTGTTCTCCATGA+AGG	0.540934	4.4:+19437078	None:intergenic
AGAATTAGTGGATAACAAGA+AGG	0.557557	4.4:-19437261	MS.gene35145:CDS
TAGTGGATAACAAGAAGGCT+AGG	0.564393	4.4:-19437256	MS.gene35145:CDS
TCTTCTAAGTCAAGATCAGT+AGG	0.576234	4.4:+19436939	None:intergenic
GAGTGATTTGACCGAAGAGT+TGG	0.587637	4.4:-19436994	MS.gene35145:CDS
AAAGCAAATGGTTTACCACC+AGG	0.590273	4.4:+19437137	None:intergenic
GAGTACCTTCATGGAGAACA+AGG	0.593782	4.4:-19437083	MS.gene35145:CDS
AGAAGAACTTCTAAAAGCGA+AGG	0.608771	4.4:-19436922	MS.gene35145:CDS
AAGATCAGTAGGTACCATAG+AGG	0.623435	4.4:+19436950	None:intergenic
AGCAAATGGTTTACCACCAG+GGG	0.628921	4.4:+19437139	None:intergenic
GCATCATTGAAAGAGCTCCA+TGG	0.644750	4.4:-19436900	MS.gene35145:CDS
AAGCAAATGGTTTACCACCA+GGG	0.655343	4.4:+19437138	None:intergenic
ATAGTTGGATTTACCCCTGG+TGG	0.655734	4.4:-19437152	MS.gene35145:CDS
AGAGCTCCATGGTAACATTG+AGG	0.658337	4.4:-19436889	MS.gene35145:CDS
ATGCTGCCTCAATGTTACCA+TGG	0.672251	4.4:+19436883	None:intergenic
GAGTTGGATGAAGTTGACAA+AGG	0.684442	4.4:-19436978	MS.gene35145:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATAATTAGTTTCAATAACAT+TGG	+	chr4.4:19437284-19437303	None:intergenic	15.0%
!!	AAAAATAGAGATAGAATTAG+TGG	-	chr4.4:19436799-19436818	MS.gene35145:CDS	20.0%
!!	GATTTAGATTGTAAAAGAAA+GGG	-	chr4.4:19437253-19437272	MS.gene35145:CDS	20.0%
!!	TGATTTAGATTGTAAAAGAA+AGG	-	chr4.4:19437252-19437271	MS.gene35145:CDS	20.0%
!	TCTAAATCAATGATGTGTAT+AGG	+	chr4.4:19437241-19437260	None:intergenic	25.0%
	ATTCTTTGTAATGCTAGAGT+TGG	-	chr4.4:19436896-19436915	MS.gene35145:CDS	30.0%
!	ACATTTTCAAAGAGAAGAAG+AGG	-	chr4.4:19436845-19436864	MS.gene35145:CDS	30.0%
!	AGAATTAGTGGATAACAAGA+AGG	-	chr4.4:19436811-19436830	MS.gene35145:CDS	30.0%
	TCTTCTAAGTCAAGATCAGT+AGG	+	chr4.4:19437136-19437155	None:intergenic	35.0%
	TGTGTATAGGTTTCTTTGCA+AGG	+	chr4.4:19437228-19437247	None:intergenic	35.0%
!	AGAAGAACTTCTAAAAGCGA+AGG	-	chr4.4:19437150-19437169	MS.gene35145:CDS	35.0%
!!	AATGCTAGAGTTGGTATAGT+TGG	-	chr4.4:19436905-19436924	MS.gene35145:CDS	35.0%
	AAAGCAAATGGTTTACCACC+AGG	+	chr4.4:19436938-19436957	None:intergenic	40.0%
	AAGATCAGTAGGTACCATAG+AGG	+	chr4.4:19437125-19437144	None:intergenic	40.0%
	AAGCAAATGGTTTACCACCA+GGG	+	chr4.4:19436937-19436956	None:intergenic	40.0%
	ATTCACCTTGTTCTCCATGA+AGG	+	chr4.4:19436997-19437016	None:intergenic	40.0%
	GAGTTGGATGAAGTTGACAA+AGG	-	chr4.4:19437094-19437113	MS.gene35145:CDS	40.0%
	GTCAACTTCATCCAACTCTT+CGG	+	chr4.4:19437092-19437111	None:intergenic	40.0%
	GTGACTAATGAGTACCTTCA+TGG	-	chr4.4:19436980-19436999	MS.gene35145:CDS	40.0%
	GTTGGAGAACCAAAAGCAAA+TGG	+	chr4.4:19436950-19436969	None:intergenic	40.0%
	TGACAAAGGTAAAGCCTCTA+TGG	-	chr4.4:19437108-19437127	MS.gene35145:CDS	40.0%
	TTAGTCACAGCTTCGAAAGT+TGG	+	chr4.4:19436968-19436987	None:intergenic	40.0%
!	GGTGGTAAACCATTTGCTTT+TGG	-	chr4.4:19436938-19436957	MS.gene35145:CDS	40.0%
!	TAGTGGATAACAAGAAGGCT+AGG	-	chr4.4:19436816-19436835	MS.gene35145:CDS	40.0%
	AGAGCTCCATGGTAACATTG+AGG	-	chr4.4:19437183-19437202	MS.gene35145:CDS	45.0%
	AGCAAATGGTTTACCACCAG+GGG	+	chr4.4:19436936-19436955	None:intergenic	45.0%
	ATAGTTGGATTTACCCCTGG+TGG	-	chr4.4:19436920-19436939	MS.gene35145:CDS	45.0%
	ATGCTGCCTCAATGTTACCA+TGG	+	chr4.4:19437192-19437211	None:intergenic	45.0%
	GAGTACCTTCATGGAGAACA+AGG	-	chr4.4:19436989-19437008	MS.gene35145:CDS	45.0%
	GAGTGATTTGACCGAAGAGT+TGG	-	chr4.4:19437078-19437097	MS.gene35145:CDS	45.0%
	GCATCATTGAAAGAGCTCCA+TGG	-	chr4.4:19437172-19437191	MS.gene35145:CDS	45.0%
	GGTATAGTTGGATTTACCCC+TGG	-	chr4.4:19436917-19436936	MS.gene35145:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	19436788	19437306	19436788	ID=MS.gene35145
chr4.4	mRNA	19436788	19437306	19436788	ID=MS.gene35145.t1;Parent=MS.gene35145
chr4.4	exon	19436788	19437306	19436788	ID=MS.gene35145.t1.exon1;Parent=MS.gene35145.t1
chr4.4	CDS	19436788	19437306	19436788	ID=cds.MS.gene35145.t1;Parent=MS.gene35145.t1

Gene Sequence

>MS.gene35145

ATGGGTCGTAAAAAAATAGAGATAGAATTAGTGGATAACAAGAAGGCTAGGAATGTCACATTTTCAAAGAGAAGAAGAGGTCTTTTTAAGAAAGCAAGCGATTTATCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCTGGTGGTAAACCATTTGCTTTTGGTTCTCCAACTTTCGAAGCTGTGACTAATGAGTACCTTCATGGAGAACAAGGTGAATCATCGAGACAGAATGTTAAGTCTTCTCGAAATCAAAACATCAACAAGCTCAACAAAGAACTGAGTGATTTGACCGAAGAGTTGGATGAAGTTGACAAAGGTAAAGCCTCTATGGTACCTACTGATCTTGACTTAGAAGAACTTCTAAAAGCGAAGGCATCATTGAAAGAGCTCCATGGTAACATTGAGGCAGCATCATCTTTGCTTCTCCTTGCAAAGAAACCTATACACATCATTGATTTAGATTGTAAAAGAAAGGGAAAATCCAATGTTATTGAAACTAATTATTAA

Protein sequence

>MS.gene35145.t1

MGRKKIEIELVDNKKARNVTFSKRRRGLFKKASDLSILCNARVGIVGFTPGGKPFAFGSPTFEAVTNEYLHGEQGESSRQNVKSSRNQNINKLNKELSDLTEELDEVDKGKASMVPTDLDLEELLKAKASLKELHGNIEAASSLLLLAKKPIHIIDLDCKRKGKSNVIETNY