Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35146.t1 | XP_013457351.1 | 89.8 | 167 | 17 | 0 | 1 | 167 | 1 | 167 | 1.40E-72 | 282.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35146.t1 | O64703 | 38.5 | 174 | 87 | 3 | 1 | 156 | 1 | 172 | 3.1e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35146.t1 | A0A072UP11 | 89.8 | 167 | 17 | 0 | 1 | 167 | 1 | 167 | 1.0e-72 | 282.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35146.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35146.t1 | MTR_4g094638 | 89.820 | 167 | 17 | 0 | 1 | 167 | 1 | 167 | 7.10e-92 | 265 |
| MS.gene35146.t1 | MTR_4g094632 | 68.712 | 163 | 45 | 3 | 1 | 163 | 1 | 157 | 8.02e-70 | 208 |
| MS.gene35146.t1 | MTR_8g079502 | 40.351 | 171 | 82 | 7 | 1 | 158 | 1 | 164 | 4.77e-29 | 105 |
| MS.gene35146.t1 | MTR_1g047550 | 38.690 | 168 | 89 | 5 | 1 | 158 | 1 | 164 | 9.13e-29 | 105 |
| MS.gene35146.t1 | MTR_4g131030 | 35.519 | 183 | 91 | 4 | 1 | 158 | 1 | 181 | 6.23e-28 | 103 |
| MS.gene35146.t1 | MTR_3g080940 | 33.140 | 172 | 98 | 4 | 1 | 158 | 8 | 176 | 1.06e-25 | 97.8 |
| MS.gene35146.t1 | MTR_1g063160 | 37.059 | 170 | 89 | 5 | 1 | 158 | 1 | 164 | 1.25e-24 | 94.4 |
| MS.gene35146.t1 | MTR_1g054265 | 38.235 | 170 | 87 | 5 | 1 | 158 | 1 | 164 | 3.03e-24 | 93.2 |
| MS.gene35146.t1 | MTR_8g051580 | 35.503 | 169 | 93 | 4 | 1 | 158 | 1 | 164 | 6.78e-24 | 92.4 |
| MS.gene35146.t1 | MTR_8g046350 | 34.940 | 166 | 92 | 5 | 1 | 158 | 1 | 158 | 4.11e-23 | 90.1 |
| MS.gene35146.t1 | MTR_3g030770 | 42.982 | 114 | 61 | 2 | 2 | 112 | 9 | 121 | 2.36e-22 | 89.7 |
| MS.gene35146.t1 | MTR_1g108510 | 44.340 | 106 | 58 | 1 | 2 | 107 | 9 | 113 | 2.57e-22 | 89.7 |
| MS.gene35146.t1 | MTR_1g108580 | 43.396 | 106 | 59 | 1 | 2 | 107 | 9 | 113 | 1.53e-21 | 87.4 |
| MS.gene35146.t1 | MTR_8g043650 | 38.667 | 150 | 79 | 4 | 2 | 139 | 9 | 157 | 3.24e-21 | 87.0 |
| MS.gene35146.t1 | MTR_2g093190 | 42.991 | 107 | 60 | 1 | 2 | 108 | 9 | 114 | 5.73e-21 | 85.9 |
| MS.gene35146.t1 | MTR_1g106070 | 40.517 | 116 | 64 | 2 | 2 | 113 | 9 | 123 | 5.76e-21 | 85.1 |
| MS.gene35146.t1 | MTR_3g052870 | 42.241 | 116 | 62 | 2 | 2 | 113 | 9 | 123 | 7.52e-21 | 85.5 |
| MS.gene35146.t1 | MTR_5g053390 | 56.338 | 71 | 31 | 0 | 2 | 72 | 9 | 79 | 1.11e-20 | 85.5 |
| MS.gene35146.t1 | MTR_5g045560 | 38.095 | 126 | 57 | 2 | 1 | 118 | 8 | 120 | 1.94e-20 | 84.7 |
| MS.gene35146.t1 | MTR_1g105920 | 42.241 | 116 | 62 | 2 | 2 | 113 | 9 | 123 | 2.49e-20 | 84.7 |
| MS.gene35146.t1 | MTR_1g105910 | 43.396 | 106 | 59 | 1 | 2 | 107 | 9 | 113 | 1.02e-19 | 82.8 |
| MS.gene35146.t1 | MTR_2g085250 | 56.522 | 69 | 30 | 0 | 2 | 70 | 9 | 77 | 1.90e-19 | 82.0 |
| MS.gene35146.t1 | MTR_1g012570 | 42.241 | 116 | 62 | 2 | 2 | 113 | 9 | 123 | 2.09e-19 | 82.0 |
| MS.gene35146.t1 | MTR_3g052920 | 40.517 | 116 | 64 | 2 | 2 | 113 | 9 | 123 | 2.14e-19 | 82.0 |
| MS.gene35146.t1 | MTR_2g085280 | 56.522 | 69 | 30 | 0 | 2 | 70 | 9 | 77 | 2.20e-19 | 82.0 |
| MS.gene35146.t1 | MTR_0121s0100 | 43.000 | 100 | 56 | 1 | 2 | 101 | 9 | 107 | 2.49e-19 | 79.3 |
| MS.gene35146.t1 | MTR_2g030740 | 57.971 | 69 | 29 | 0 | 2 | 70 | 9 | 77 | 2.55e-19 | 82.0 |
| MS.gene35146.t1 | MTR_1g077360 | 52.113 | 71 | 34 | 0 | 2 | 72 | 9 | 79 | 3.72e-19 | 81.3 |
| MS.gene35146.t1 | MTR_7g028448 | 38.060 | 134 | 74 | 2 | 15 | 144 | 25 | 153 | 4.36e-19 | 79.7 |
| MS.gene35146.t1 | MTR_4g036915 | 38.060 | 134 | 74 | 2 | 15 | 144 | 25 | 153 | 4.36e-19 | 79.7 |
| MS.gene35146.t1 | MTR_1g075600 | 53.521 | 71 | 33 | 0 | 2 | 72 | 9 | 79 | 5.53e-19 | 80.9 |
| MS.gene35146.t1 | MTR_3g030780 | 38.679 | 106 | 64 | 1 | 2 | 107 | 9 | 113 | 2.63e-18 | 76.6 |
| MS.gene35146.t1 | MTR_5g055100 | 52.113 | 71 | 34 | 0 | 2 | 72 | 9 | 79 | 5.55e-18 | 78.2 |
| MS.gene35146.t1 | MTR_2g009890 | 33.121 | 157 | 85 | 3 | 1 | 141 | 1 | 153 | 7.75e-18 | 78.6 |
| MS.gene35146.t1 | MTR_7g075870 | 32.609 | 138 | 87 | 1 | 1 | 138 | 1 | 132 | 1.34e-16 | 74.3 |
| MS.gene35146.t1 | MTR_2g105290 | 33.133 | 166 | 91 | 6 | 1 | 152 | 11 | 170 | 1.50e-16 | 73.2 |
| MS.gene35146.t1 | MTR_3g005530 | 34.375 | 128 | 67 | 2 | 1 | 111 | 1 | 128 | 2.97e-16 | 73.6 |
| MS.gene35146.t1 | MTR_0121s0080 | 37.190 | 121 | 72 | 2 | 2 | 122 | 9 | 125 | 4.10e-16 | 73.2 |
| MS.gene35146.t1 | MTR_5g066180 | 37.069 | 116 | 56 | 4 | 1 | 108 | 1 | 107 | 4.79e-16 | 72.8 |
| MS.gene35146.t1 | MTR_3g452380 | 33.121 | 157 | 91 | 4 | 1 | 157 | 16 | 158 | 7.84e-16 | 72.8 |
| MS.gene35146.t1 | MTR_8g086290 | 40.000 | 80 | 48 | 0 | 2 | 81 | 12 | 91 | 1.16e-15 | 70.9 |
| MS.gene35146.t1 | MTR_4g109830 | 38.144 | 97 | 54 | 2 | 1 | 96 | 1 | 92 | 1.18e-15 | 72.0 |
| MS.gene35146.t1 | MTR_4g093970 | 32.624 | 141 | 85 | 3 | 1 | 138 | 27 | 160 | 1.91e-15 | 71.6 |
| MS.gene35146.t1 | MTR_7g075870 | 32.374 | 139 | 87 | 2 | 1 | 138 | 1 | 133 | 2.85e-15 | 70.5 |
| MS.gene35146.t1 | MTR_1g105905 | 37.963 | 108 | 62 | 2 | 11 | 114 | 1 | 107 | 3.11e-15 | 70.9 |
| MS.gene35146.t1 | MTR_1g101970 | 47.826 | 69 | 36 | 0 | 1 | 69 | 1 | 69 | 3.85e-15 | 69.7 |
| MS.gene35146.t1 | MTR_1g053070 | 33.094 | 139 | 91 | 1 | 1 | 139 | 1 | 137 | 4.85e-15 | 70.5 |
| MS.gene35146.t1 | MTR_5g031000 | 31.579 | 133 | 80 | 3 | 1 | 130 | 1 | 125 | 1.21e-14 | 69.3 |
| MS.gene35146.t1 | MTR_5g031000 | 31.579 | 133 | 80 | 3 | 1 | 130 | 1 | 125 | 1.27e-14 | 68.9 |
| MS.gene35146.t1 | MTR_5g032150 | 33.803 | 142 | 80 | 5 | 1 | 138 | 1 | 132 | 1.56e-14 | 68.9 |
| MS.gene35146.t1 | MTR_5g032520 | 33.803 | 142 | 80 | 5 | 1 | 138 | 1 | 132 | 1.57e-14 | 68.9 |
| MS.gene35146.t1 | MTR_5g021270 | 45.070 | 71 | 37 | 1 | 1 | 69 | 1 | 71 | 2.20e-14 | 68.6 |
| MS.gene35146.t1 | MTR_5g021270 | 45.070 | 71 | 37 | 1 | 1 | 69 | 1 | 71 | 2.34e-14 | 68.6 |
| MS.gene35146.t1 | MTR_0003s0590 | 42.500 | 80 | 46 | 0 | 1 | 80 | 1 | 80 | 2.89e-14 | 68.6 |
| MS.gene35146.t1 | MTR_6g081890 | 60.714 | 84 | 19 | 2 | 63 | 146 | 80 | 149 | 8.88e-14 | 65.9 |
| MS.gene35146.t1 | MTR_1g038300 | 28.472 | 144 | 90 | 3 | 1 | 138 | 1 | 137 | 1.14e-13 | 66.6 |
| MS.gene35146.t1 | MTR_8g033220 | 29.710 | 138 | 92 | 1 | 1 | 138 | 1 | 133 | 2.01e-13 | 65.9 |
| MS.gene35146.t1 | MTR_8g033220 | 29.710 | 138 | 92 | 1 | 1 | 138 | 1 | 133 | 2.07e-13 | 65.9 |
| MS.gene35146.t1 | MTR_4g102530 | 43.478 | 69 | 39 | 0 | 1 | 69 | 1 | 69 | 2.71e-13 | 65.1 |
| MS.gene35146.t1 | MTR_3g113030 | 29.927 | 137 | 73 | 3 | 1 | 130 | 1 | 121 | 2.75e-13 | 65.5 |
| MS.gene35146.t1 | MTR_3g102570 | 32.653 | 147 | 76 | 7 | 1 | 140 | 1 | 131 | 2.89e-13 | 66.6 |
| MS.gene35146.t1 | MTR_3g067875 | 56.364 | 55 | 24 | 0 | 11 | 65 | 1 | 55 | 5.26e-13 | 61.2 |
| MS.gene35146.t1 | MTR_5g046790 | 45.902 | 61 | 33 | 0 | 1 | 61 | 1 | 61 | 5.72e-13 | 64.3 |
| MS.gene35146.t1 | MTR_8g033270 | 29.605 | 152 | 88 | 3 | 1 | 147 | 1 | 138 | 5.75e-13 | 65.1 |
| MS.gene35146.t1 | MTR_1g029670 | 48.333 | 60 | 31 | 0 | 1 | 60 | 1 | 60 | 7.84e-13 | 63.5 |
| MS.gene35146.t1 | MTR_3g088615 | 32.609 | 138 | 84 | 3 | 1 | 138 | 1 | 129 | 8.48e-13 | 63.5 |
| MS.gene35146.t1 | MTR_5g066960 | 45.000 | 60 | 33 | 0 | 1 | 60 | 1 | 60 | 9.53e-13 | 60.5 |
| MS.gene35146.t1 | MTR_4g127140 | 37.719 | 114 | 70 | 1 | 1 | 114 | 11 | 123 | 1.21e-12 | 63.2 |
| MS.gene35146.t1 | MTR_4g036050 | 30.818 | 159 | 98 | 5 | 1 | 151 | 1 | 155 | 1.41e-12 | 63.2 |
| MS.gene35146.t1 | MTR_7g016630 | 32.927 | 82 | 54 | 1 | 1 | 81 | 1 | 82 | 1.53e-12 | 63.9 |
| MS.gene35146.t1 | MTR_4g036050 | 34.259 | 108 | 68 | 2 | 1 | 105 | 1 | 108 | 1.62e-12 | 62.4 |
| MS.gene35146.t1 | MTR_4g036050 | 34.259 | 108 | 68 | 2 | 1 | 105 | 1 | 108 | 1.68e-12 | 62.8 |
| MS.gene35146.t1 | MTR_4g036050 | 34.259 | 108 | 68 | 2 | 1 | 105 | 1 | 108 | 1.84e-12 | 62.8 |
| MS.gene35146.t1 | MTR_8g066260 | 37.209 | 86 | 48 | 2 | 1 | 85 | 1 | 81 | 2.22e-12 | 63.2 |
| MS.gene35146.t1 | MTR_7g075850 | 30.519 | 154 | 85 | 4 | 1 | 147 | 1 | 139 | 2.81e-12 | 63.2 |
| MS.gene35146.t1 | MTR_8g087860 | 27.536 | 138 | 94 | 1 | 1 | 138 | 17 | 148 | 3.05e-12 | 62.8 |
| MS.gene35146.t1 | MTR_6g464720 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 7.75e-12 | 62.0 |
| MS.gene35146.t1 | MTR_2g461710 | 42.373 | 59 | 34 | 0 | 1 | 59 | 1 | 59 | 1.59e-11 | 57.0 |
| MS.gene35146.t1 | MTR_5g046870 | 43.662 | 71 | 37 | 2 | 1 | 69 | 1 | 70 | 1.74e-11 | 58.5 |
| MS.gene35146.t1 | MTR_2g017865 | 31.884 | 138 | 76 | 3 | 1 | 120 | 16 | 153 | 2.54e-11 | 60.5 |
| MS.gene35146.t1 | MTR_7g016600 | 41.429 | 70 | 40 | 1 | 1 | 69 | 1 | 70 | 2.94e-11 | 60.5 |
| MS.gene35146.t1 | MTR_7g062350 | 35.514 | 107 | 66 | 2 | 10 | 116 | 29 | 132 | 5.54e-11 | 59.7 |
| MS.gene35146.t1 | MTR_4g051538 | 43.636 | 55 | 31 | 0 | 18 | 72 | 25 | 79 | 6.14e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35146.t1 | AT2G34440 | 38.506 | 174 | 87 | 3 | 1 | 156 | 1 | 172 | 1.51e-34 | 119 |
| MS.gene35146.t1 | AT3G66656 | 55.556 | 81 | 36 | 0 | 1 | 81 | 1 | 81 | 7.20e-24 | 92.4 |
| MS.gene35146.t1 | AT2G24840 | 43.220 | 118 | 62 | 2 | 1 | 118 | 62 | 174 | 1.74e-23 | 93.6 |
| MS.gene35146.t1 | AT1G28460 | 41.463 | 123 | 69 | 3 | 2 | 124 | 8 | 127 | 4.45e-20 | 82.8 |
| MS.gene35146.t1 | AT4G09960 | 36.719 | 128 | 64 | 2 | 1 | 111 | 1 | 128 | 1.32e-18 | 79.7 |
| MS.gene35146.t1 | AT4G09960 | 36.719 | 128 | 64 | 2 | 1 | 111 | 1 | 128 | 1.42e-18 | 79.3 |
| MS.gene35146.t1 | AT4G09960 | 36.719 | 128 | 64 | 2 | 1 | 111 | 2 | 129 | 1.43e-18 | 79.7 |
| MS.gene35146.t1 | AT5G60440 | 42.857 | 119 | 63 | 2 | 2 | 115 | 7 | 125 | 1.72e-18 | 80.9 |
| MS.gene35146.t1 | AT4G09960 | 36.719 | 128 | 64 | 2 | 1 | 111 | 11 | 138 | 2.34e-18 | 79.3 |
| MS.gene35146.t1 | AT4G09960 | 36.719 | 128 | 64 | 2 | 1 | 111 | 27 | 154 | 3.45e-18 | 79.3 |
| MS.gene35146.t1 | AT4G09960 | 36.719 | 128 | 64 | 2 | 1 | 111 | 96 | 223 | 4.01e-18 | 80.1 |
| MS.gene35146.t1 | AT1G29962 | 31.361 | 169 | 103 | 5 | 2 | 165 | 8 | 168 | 4.54e-18 | 77.4 |
| MS.gene35146.t1 | AT2G45660 | 30.657 | 137 | 89 | 1 | 1 | 137 | 1 | 131 | 4.78e-18 | 76.6 |
| MS.gene35146.t1 | AT3G57230 | 36.885 | 122 | 60 | 2 | 1 | 106 | 1 | 121 | 6.09e-18 | 76.3 |
| MS.gene35146.t1 | AT4G24540 | 35.461 | 141 | 71 | 5 | 1 | 134 | 1 | 128 | 1.04e-17 | 77.4 |
| MS.gene35146.t1 | AT2G45660 | 30.657 | 137 | 89 | 1 | 1 | 137 | 1 | 131 | 1.78e-17 | 76.6 |
| MS.gene35146.t1 | AT1G47760 | 30.723 | 166 | 89 | 4 | 1 | 155 | 1 | 151 | 3.76e-17 | 75.1 |
| MS.gene35146.t1 | AT1G01530 | 38.136 | 118 | 64 | 2 | 1 | 115 | 6 | 117 | 3.83e-17 | 76.3 |
| MS.gene35146.t1 | AT3G57230 | 36.885 | 122 | 60 | 2 | 1 | 106 | 1 | 121 | 4.52e-17 | 75.9 |
| MS.gene35146.t1 | AT3G57230 | 36.885 | 122 | 60 | 2 | 1 | 106 | 1 | 121 | 4.52e-17 | 75.9 |
| MS.gene35146.t1 | AT1G65360 | 33.071 | 127 | 64 | 2 | 1 | 118 | 6 | 120 | 8.99e-17 | 75.1 |
| MS.gene35146.t1 | AT5G62165 | 30.714 | 140 | 87 | 2 | 1 | 138 | 1 | 132 | 2.16e-16 | 72.4 |
| MS.gene35146.t1 | AT5G62165 | 30.714 | 140 | 87 | 2 | 1 | 138 | 1 | 132 | 2.16e-16 | 72.4 |
| MS.gene35146.t1 | AT5G62165 | 30.714 | 140 | 87 | 2 | 1 | 138 | 1 | 132 | 2.16e-16 | 72.4 |
| MS.gene35146.t1 | AT5G62165 | 30.714 | 140 | 87 | 2 | 1 | 138 | 1 | 132 | 2.16e-16 | 72.4 |
| MS.gene35146.t1 | AT5G62165 | 30.714 | 140 | 87 | 2 | 1 | 138 | 1 | 132 | 2.16e-16 | 72.4 |
| MS.gene35146.t1 | AT4G22950 | 37.838 | 111 | 62 | 1 | 1 | 111 | 1 | 104 | 3.07e-16 | 72.4 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 5.43e-16 | 71.2 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 5.43e-16 | 71.2 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 5.43e-16 | 71.2 |
| MS.gene35146.t1 | AT4G22950 | 37.838 | 111 | 62 | 1 | 1 | 111 | 1 | 104 | 1.97e-15 | 71.2 |
| MS.gene35146.t1 | AT4G22950 | 37.838 | 111 | 62 | 1 | 1 | 111 | 1 | 104 | 1.97e-15 | 71.2 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 2.34e-15 | 70.5 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 2.34e-15 | 70.5 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 3.43e-15 | 70.5 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 3.43e-15 | 70.5 |
| MS.gene35146.t1 | AT5G62165 | 30.137 | 146 | 92 | 2 | 1 | 144 | 1 | 138 | 3.43e-15 | 70.5 |
| MS.gene35146.t1 | AT5G13790 | 33.600 | 125 | 78 | 2 | 1 | 125 | 1 | 120 | 4.67e-15 | 70.9 |
| MS.gene35146.t1 | AT4G37940 | 31.538 | 130 | 82 | 2 | 1 | 130 | 1 | 123 | 5.76e-15 | 68.9 |
| MS.gene35146.t1 | AT4G37940 | 31.538 | 130 | 82 | 2 | 1 | 130 | 1 | 123 | 5.77e-15 | 70.1 |
| MS.gene35146.t1 | AT1G69120 | 36.458 | 96 | 55 | 2 | 1 | 95 | 1 | 91 | 5.98e-15 | 70.1 |
| MS.gene35146.t1 | AT4G37940 | 31.538 | 130 | 82 | 2 | 1 | 130 | 1 | 123 | 7.26e-15 | 69.7 |
| MS.gene35146.t1 | AT2G22540 | 31.609 | 174 | 95 | 6 | 1 | 162 | 1 | 162 | 8.04e-15 | 70.1 |
| MS.gene35146.t1 | AT2G22540 | 31.609 | 174 | 95 | 6 | 1 | 162 | 1 | 162 | 8.04e-15 | 70.1 |
| MS.gene35146.t1 | AT4G36590 | 38.462 | 104 | 60 | 1 | 2 | 101 | 7 | 110 | 9.56e-15 | 69.7 |
| MS.gene35146.t1 | AT1G69120 | 36.458 | 96 | 55 | 2 | 1 | 95 | 1 | 91 | 1.05e-14 | 69.7 |
| MS.gene35146.t1 | AT5G62165 | 44.928 | 69 | 38 | 0 | 1 | 69 | 1 | 69 | 1.26e-14 | 66.6 |
| MS.gene35146.t1 | AT1G28450 | 36.508 | 126 | 74 | 4 | 2 | 124 | 8 | 130 | 1.67e-14 | 68.2 |
| MS.gene35146.t1 | AT5G51870 | 44.928 | 69 | 38 | 0 | 1 | 69 | 1 | 69 | 1.98e-14 | 67.8 |
| MS.gene35146.t1 | AT5G51860 | 31.034 | 145 | 88 | 3 | 1 | 141 | 1 | 137 | 2.05e-14 | 68.6 |
| MS.gene35146.t1 | AT1G26310 | 30.714 | 140 | 90 | 3 | 1 | 138 | 1 | 135 | 2.19e-14 | 68.9 |
| MS.gene35146.t1 | AT5G13790 | 34.400 | 125 | 74 | 3 | 1 | 125 | 1 | 117 | 2.20e-14 | 69.3 |
| MS.gene35146.t1 | AT2G14210 | 45.714 | 70 | 37 | 1 | 1 | 69 | 1 | 70 | 2.30e-14 | 68.6 |
| MS.gene35146.t1 | AT2G14210 | 45.714 | 70 | 37 | 1 | 1 | 69 | 1 | 70 | 2.43e-14 | 68.6 |
| MS.gene35146.t1 | AT5G51860 | 31.034 | 145 | 88 | 3 | 1 | 141 | 1 | 137 | 2.59e-14 | 67.8 |
| MS.gene35146.t1 | AT3G58780 | 30.935 | 139 | 88 | 2 | 1 | 138 | 16 | 147 | 2.63e-14 | 68.6 |
| MS.gene35146.t1 | AT3G04100 | 32.407 | 108 | 71 | 1 | 2 | 107 | 14 | 121 | 2.66e-14 | 68.2 |
| MS.gene35146.t1 | AT3G58780 | 30.935 | 139 | 88 | 2 | 1 | 138 | 16 | 147 | 2.73e-14 | 68.9 |
| MS.gene35146.t1 | AT3G58780 | 30.935 | 139 | 88 | 2 | 1 | 138 | 22 | 153 | 2.82e-14 | 68.6 |
| MS.gene35146.t1 | AT5G51870 | 44.928 | 69 | 38 | 0 | 1 | 69 | 1 | 69 | 2.95e-14 | 67.8 |
| MS.gene35146.t1 | AT5G51870 | 44.928 | 69 | 38 | 0 | 1 | 69 | 24 | 92 | 3.12e-14 | 67.8 |
| MS.gene35146.t1 | AT2G42830 | 30.216 | 139 | 89 | 2 | 1 | 138 | 16 | 147 | 3.13e-14 | 68.6 |
| MS.gene35146.t1 | AT2G42830 | 30.216 | 139 | 89 | 2 | 1 | 138 | 16 | 147 | 3.15e-14 | 68.6 |
| MS.gene35146.t1 | AT2G45650 | 44.928 | 69 | 38 | 0 | 1 | 69 | 1 | 69 | 4.49e-14 | 68.2 |
| MS.gene35146.t1 | AT5G10140 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 4.71e-14 | 66.6 |
| MS.gene35146.t1 | AT5G51870 | 44.928 | 69 | 38 | 0 | 1 | 69 | 1 | 69 | 5.23e-14 | 67.4 |
| MS.gene35146.t1 | AT5G51870 | 44.928 | 69 | 38 | 0 | 1 | 69 | 11 | 79 | 6.93e-14 | 67.4 |
| MS.gene35146.t1 | AT5G10140 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 8.34e-14 | 66.2 |
| MS.gene35146.t1 | AT5G10140 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 9.23e-14 | 66.2 |
| MS.gene35146.t1 | AT5G10140 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 1.07e-13 | 66.2 |
| MS.gene35146.t1 | AT3G54340 | 46.875 | 64 | 34 | 0 | 1 | 64 | 1 | 64 | 1.11e-13 | 66.6 |
| MS.gene35146.t1 | AT3G57390 | 29.936 | 157 | 102 | 3 | 1 | 152 | 1 | 154 | 1.15e-13 | 66.6 |
| MS.gene35146.t1 | AT5G65050 | 38.750 | 80 | 47 | 2 | 1 | 78 | 1 | 80 | 1.17e-13 | 65.9 |
| MS.gene35146.t1 | AT5G65060 | 37.500 | 80 | 48 | 2 | 1 | 78 | 1 | 80 | 1.26e-13 | 65.9 |
| MS.gene35146.t1 | AT1G72350 | 47.826 | 69 | 34 | 1 | 2 | 70 | 43 | 109 | 1.41e-13 | 66.2 |
| MS.gene35146.t1 | AT3G57390 | 29.936 | 157 | 102 | 3 | 1 | 152 | 1 | 154 | 1.86e-13 | 66.6 |
| MS.gene35146.t1 | AT2G22630 | 27.536 | 138 | 93 | 2 | 1 | 138 | 1 | 131 | 1.94e-13 | 65.9 |
| MS.gene35146.t1 | AT2G22630 | 27.536 | 138 | 93 | 2 | 1 | 138 | 1 | 131 | 1.94e-13 | 65.9 |
| MS.gene35146.t1 | AT5G23260 | 43.836 | 73 | 39 | 1 | 1 | 71 | 1 | 73 | 2.47e-13 | 66.2 |
| MS.gene35146.t1 | AT5G23260 | 43.836 | 73 | 39 | 1 | 1 | 71 | 17 | 89 | 2.56e-13 | 66.2 |
| MS.gene35146.t1 | AT5G23260 | 43.836 | 73 | 39 | 1 | 1 | 71 | 1 | 73 | 2.70e-13 | 65.9 |
| MS.gene35146.t1 | AT5G23260 | 43.836 | 73 | 39 | 1 | 1 | 71 | 17 | 89 | 2.71e-13 | 66.2 |
| MS.gene35146.t1 | AT5G65060 | 37.500 | 80 | 48 | 2 | 1 | 78 | 1 | 80 | 3.30e-13 | 64.7 |
| MS.gene35146.t1 | AT5G65050 | 38.750 | 80 | 47 | 2 | 1 | 78 | 1 | 80 | 3.37e-13 | 64.7 |
| MS.gene35146.t1 | AT3G58780 | 28.986 | 138 | 85 | 1 | 1 | 138 | 16 | 140 | 3.39e-13 | 65.5 |
| MS.gene35146.t1 | AT5G65060 | 37.500 | 80 | 48 | 2 | 1 | 78 | 1 | 80 | 3.48e-13 | 64.7 |
| MS.gene35146.t1 | AT3G61120 | 46.377 | 69 | 37 | 0 | 1 | 69 | 1 | 69 | 3.51e-13 | 65.5 |
| MS.gene35146.t1 | AT5G65050 | 38.750 | 80 | 47 | 2 | 1 | 78 | 1 | 80 | 3.73e-13 | 64.7 |
| MS.gene35146.t1 | AT5G65050 | 38.750 | 80 | 47 | 2 | 1 | 78 | 1 | 80 | 3.78e-13 | 64.7 |
| MS.gene35146.t1 | AT5G20240 | 32.877 | 146 | 79 | 6 | 1 | 142 | 1 | 131 | 4.64e-13 | 63.5 |
| MS.gene35146.t1 | AT4G11880 | 34.821 | 112 | 65 | 2 | 1 | 111 | 1 | 105 | 7.35e-13 | 63.5 |
| MS.gene35146.t1 | AT4G11880 | 34.821 | 112 | 65 | 2 | 1 | 111 | 1 | 105 | 7.35e-13 | 63.5 |
| MS.gene35146.t1 | AT5G65070 | 39.344 | 61 | 37 | 0 | 1 | 61 | 1 | 61 | 1.21e-12 | 62.4 |
| MS.gene35146.t1 | AT1G71692 | 35.088 | 114 | 65 | 4 | 1 | 105 | 1 | 114 | 1.22e-12 | 63.5 |
| MS.gene35146.t1 | AT4G11880 | 34.821 | 112 | 65 | 2 | 1 | 111 | 1 | 105 | 1.43e-12 | 63.5 |
| MS.gene35146.t1 | AT4G11880 | 34.821 | 112 | 65 | 2 | 1 | 111 | 1 | 105 | 1.43e-12 | 63.5 |
| MS.gene35146.t1 | AT5G60910 | 41.429 | 70 | 40 | 1 | 1 | 69 | 1 | 70 | 1.65e-12 | 63.5 |
| MS.gene35146.t1 | AT2G22540 | 52.727 | 55 | 26 | 0 | 1 | 55 | 1 | 55 | 1.80e-12 | 63.5 |
| MS.gene35146.t1 | AT5G20240 | 32.877 | 146 | 79 | 6 | 1 | 142 | 1 | 131 | 1.95e-12 | 63.2 |
| MS.gene35146.t1 | AT3G30260 | 35.955 | 89 | 51 | 2 | 1 | 88 | 1 | 84 | 2.26e-12 | 63.5 |
| MS.gene35146.t1 | AT4G37435 | 30.714 | 140 | 70 | 3 | 1 | 113 | 1 | 140 | 2.53e-12 | 62.4 |
| MS.gene35146.t1 | AT5G65070 | 39.344 | 61 | 37 | 0 | 1 | 61 | 1 | 61 | 2.97e-12 | 62.4 |
| MS.gene35146.t1 | AT1G77950 | 36.842 | 114 | 66 | 3 | 1 | 112 | 1 | 110 | 3.21e-12 | 63.2 |
| MS.gene35146.t1 | AT1G77950 | 36.842 | 114 | 66 | 3 | 1 | 112 | 1 | 110 | 3.21e-12 | 63.2 |
| MS.gene35146.t1 | AT1G77950 | 36.842 | 114 | 66 | 3 | 1 | 112 | 1 | 110 | 3.21e-12 | 63.2 |
| MS.gene35146.t1 | AT1G77950 | 36.842 | 114 | 66 | 3 | 1 | 112 | 1 | 110 | 3.21e-12 | 63.2 |
| MS.gene35146.t1 | AT1G77980 | 30.435 | 161 | 97 | 6 | 1 | 159 | 1 | 148 | 6.16e-12 | 62.8 |
| MS.gene35146.t1 | AT5G65070 | 39.344 | 61 | 37 | 0 | 1 | 61 | 1 | 61 | 6.91e-12 | 62.0 |
| MS.gene35146.t1 | AT3G02310 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 8.56e-12 | 61.2 |
| MS.gene35146.t1 | AT5G65070 | 39.344 | 61 | 37 | 0 | 1 | 61 | 1 | 61 | 8.67e-12 | 61.2 |
| MS.gene35146.t1 | AT5G65070 | 40.678 | 59 | 35 | 0 | 1 | 59 | 1 | 59 | 1.09e-11 | 61.2 |
| MS.gene35146.t1 | AT3G02310 | 42.857 | 70 | 39 | 1 | 1 | 69 | 1 | 70 | 2.65e-11 | 60.5 |
| MS.gene35146.t1 | AT1G22130 | 36.634 | 101 | 58 | 3 | 1 | 99 | 1 | 97 | 3.28e-11 | 60.8 |
| MS.gene35146.t1 | AT4G18960 | 28.144 | 167 | 107 | 3 | 2 | 167 | 18 | 172 | 4.23e-11 | 60.1 |
| MS.gene35146.t1 | AT2G03710 | 45.614 | 57 | 31 | 0 | 1 | 57 | 1 | 57 | 5.15e-11 | 58.9 |
| MS.gene35146.t1 | AT2G26320 | 37.037 | 81 | 45 | 2 | 1 | 75 | 17 | 97 | 8.99e-11 | 56.6 |
| MS.gene35146.t1 | AT5G15800 | 45.614 | 57 | 31 | 0 | 1 | 57 | 1 | 57 | 9.79e-11 | 58.9 |
Find 33 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCCACAGTTTGGAAATT+TGG | 0.210002 | 4.4:+19410275 | None:intergenic |
| TTGTTCATCATGTTGATATT+TGG | 0.210857 | 4.4:+19410182 | None:intergenic |
| CTCCACCTTCTTCAACTCTT+TGG | 0.225832 | 4.4:+19410142 | None:intergenic |
| AGTGGTAATCCATTTGCTTT+TGG | 0.324426 | 4.4:-19410302 | MS.gene35146:CDS |
| GCATATACGCATCATTGATT+TGG | 0.326180 | 4.4:-19409985 | MS.gene35146:CDS |
| TTAAGATCAGCAAGTGCAAT+AGG | 0.366907 | 4.4:+19410098 | None:intergenic |
| AAAGCTAGAGTTGGTATAGT+TGG | 0.376951 | 4.4:-19410335 | MS.gene35146:CDS |
| GGTATTGTTCAGCCACAGTT+TGG | 0.403177 | 4.4:+19410267 | None:intergenic |
| AGATGGAACTTGTGAAGAAC+AGG | 0.420903 | 4.4:-19410433 | MS.gene35146:CDS |
| TTGATTTGGTTTGTAAAAGA+AGG | 0.423169 | 4.4:-19409971 | MS.gene35146:CDS |
| TAAGATCAGCAAGTGCAATA+GGG | 0.429366 | 4.4:+19410099 | None:intergenic |
| CTGATTCTTGTCCTTCATGA+AGG | 0.455174 | 4.4:+19410246 | None:intergenic |
| TTTGGAGTACCAAAAGCAAA+TGG | 0.462718 | 4.4:+19410293 | None:intergenic |
| TTGTGAAGAACAGGAGTGCT+AGG | 0.529512 | 4.4:-19410424 | MS.gene35146:CDS |
| AATCTTTGTAAAGCTAGAGT+TGG | 0.532383 | 4.4:-19410344 | MS.gene35146:CDS |
| AAGCAAATGGATTACCACTT+GGG | 0.543871 | 4.4:+19410306 | None:intergenic |
| AAGGTGGAGGAAGTTAAGAA+AGG | 0.546878 | 4.4:-19410128 | MS.gene35146:CDS |
| GAAGGACAAGAATCAGAAGC+TGG | 0.549251 | 4.4:-19410239 | MS.gene35146:CDS |
| AAAAGAACTTCTAAAAGTGA+AGG | 0.559771 | 4.4:-19410072 | MS.gene35146:CDS |
| AAAGCAAATGGATTACCACT+TGG | 0.562709 | 4.4:+19410305 | None:intergenic |
| TTTAACCAAAGAGTTGAAGA+AGG | 0.565193 | 4.4:-19410147 | MS.gene35146:CDS |
| AAGATCAGCAAGTGCAATAG+GGG | 0.575405 | 4.4:+19410100 | None:intergenic |
| CAAAGAGTTGAAGAAGGTGG+AGG | 0.587290 | 4.4:-19410141 | MS.gene35146:CDS |
| AATCAGAAGCTGGATCATCA+AGG | 0.592352 | 4.4:-19410229 | MS.gene35146:CDS |
| GCTTCGCTGAAAGAGCTCCA+TGG | 0.609990 | 4.4:-19410050 | MS.gene35146:CDS |
| ATAGTTGGATTTACCCCAAG+TGG | 0.610668 | 4.4:-19410320 | MS.gene35146:CDS |
| AACCAAAGAGTTGAAGAAGG+TGG | 0.610693 | 4.4:-19410144 | MS.gene35146:CDS |
| AGCAAATGGATTACCACTTG+GGG | 0.611363 | 4.4:+19410307 | None:intergenic |
| GCTGAACAATACCTTCATGA+AGG | 0.624239 | 4.4:-19410257 | MS.gene35146:CDS |
| TACTCCAAATTTCCAAACTG+TGG | 0.628484 | 4.4:-19410279 | MS.gene35146:CDS |
| ATGATGAACAAAGAATTGAG+TGG | 0.675457 | 4.4:-19410170 | MS.gene35146:CDS |
| ATGCTGCCTCGATGTCACCA+TGG | 0.676966 | 4.4:+19410033 | None:intergenic |
| AGAGCTCCATGGTGACATCG+AGG | 0.706026 | 4.4:-19410039 | MS.gene35146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGTTCATCATGTTGATATT+TGG | + | chr4.4:19410241-19410260 | None:intergenic | 25.0% |
| !! | AAAAGAACTTCTAAAAGTGA+AGG | - | chr4.4:19410348-19410367 | MS.gene35146:CDS | 25.0% |
| !! | TTGATATTTGGATTTTCAGA+GGG | + | chr4.4:19410229-19410248 | None:intergenic | 25.0% |
| !!! | TTGATTTGGTTTGTAAAAGA+AGG | - | chr4.4:19410449-19410468 | MS.gene35146:CDS | 25.0% |
| AATCTTTGTAAAGCTAGAGT+TGG | - | chr4.4:19410076-19410095 | MS.gene35146:CDS | 30.0% | |
| ACATTCTCAAAAAGAAAGAG+TGG | - | chr4.4:19410025-19410044 | MS.gene35146:CDS | 30.0% | |
| ATGATGAACAAAGAATTGAG+TGG | - | chr4.4:19410250-19410269 | MS.gene35146:CDS | 30.0% | |
| TTTAACCAAAGAGTTGAAGA+AGG | - | chr4.4:19410273-19410292 | MS.gene35146:CDS | 30.0% | |
| ! | GTTGATATTTGGATTTTCAG+AGG | + | chr4.4:19410230-19410249 | None:intergenic | 30.0% |
| TAAGATCAGCAAGTGCAATA+GGG | + | chr4.4:19410324-19410343 | None:intergenic | 35.0% | |
| TACTCCAAATTTCCAAACTG+TGG | - | chr4.4:19410141-19410160 | MS.gene35146:CDS | 35.0% | |
| TTAAGATCAGCAAGTGCAAT+AGG | + | chr4.4:19410325-19410344 | None:intergenic | 35.0% | |
| ! | AGTGGTAATCCATTTGCTTT+TGG | - | chr4.4:19410118-19410137 | MS.gene35146:CDS | 35.0% |
| ! | GCATATACGCATCATTGATT+TGG | - | chr4.4:19410435-19410454 | MS.gene35146:CDS | 35.0% |
| ! | TTTGGAGTACCAAAAGCAAA+TGG | + | chr4.4:19410130-19410149 | None:intergenic | 35.0% |
| !! | AAAGCAAATGGATTACCACT+TGG | + | chr4.4:19410118-19410137 | None:intergenic | 35.0% |
| !! | AAAGCTAGAGTTGGTATAGT+TGG | - | chr4.4:19410085-19410104 | MS.gene35146:CDS | 35.0% |
| !! | AAGCAAATGGATTACCACTT+GGG | + | chr4.4:19410117-19410136 | None:intergenic | 35.0% |
| AACCAAAGAGTTGAAGAAGG+TGG | - | chr4.4:19410276-19410295 | MS.gene35146:CDS | 40.0% | |
| AAGATCAGCAAGTGCAATAG+GGG | + | chr4.4:19410323-19410342 | None:intergenic | 40.0% | |
| AAGGTGGAGGAAGTTAAGAA+AGG | - | chr4.4:19410292-19410311 | MS.gene35146:CDS | 40.0% | |
| AATCAGAAGCTGGATCATCA+AGG | - | chr4.4:19410191-19410210 | MS.gene35146:CDS | 40.0% | |
| AGATGGAACTTGTGAAGAAC+AGG | - | chr4.4:19409987-19410006 | MS.gene35146:CDS | 40.0% | |
| ATAGTTGGATTTACCCCAAG+TGG | - | chr4.4:19410100-19410119 | MS.gene35146:CDS | 40.0% | |
| CTGATTCTTGTCCTTCATGA+AGG | + | chr4.4:19410177-19410196 | None:intergenic | 40.0% | |
| GCTGAACAATACCTTCATGA+AGG | - | chr4.4:19410163-19410182 | MS.gene35146:CDS | 40.0% | |
| GGGTCGTAAAAAGATAGAGA+TGG | - | chr4.4:19409970-19409989 | MS.gene35146:CDS | 40.0% | |
| TCAGCCACAGTTTGGAAATT+TGG | + | chr4.4:19410148-19410167 | None:intergenic | 40.0% | |
| !! | AGCAAATGGATTACCACTTG+GGG | + | chr4.4:19410116-19410135 | None:intergenic | 40.0% |
| CAAAGAGTTGAAGAAGGTGG+AGG | - | chr4.4:19410279-19410298 | MS.gene35146:CDS | 45.0% | |
| CTCCACCTTCTTCAACTCTT+TGG | + | chr4.4:19410281-19410300 | None:intergenic | 45.0% | |
| GAAGGACAAGAATCAGAAGC+TGG | - | chr4.4:19410181-19410200 | MS.gene35146:CDS | 45.0% | |
| GGTATTGTTCAGCCACAGTT+TGG | + | chr4.4:19410156-19410175 | None:intergenic | 45.0% | |
| !! | TTGTGAAGAACAGGAGTGCT+AGG | - | chr4.4:19409996-19410015 | MS.gene35146:CDS | 45.0% |
| AGAGCTCCATGGTGACATCG+AGG | - | chr4.4:19410381-19410400 | MS.gene35146:CDS | 55.0% | |
| ATGCTGCCTCGATGTCACCA+TGG | + | chr4.4:19410390-19410409 | None:intergenic | 55.0% | |
| GCTTCGCTGAAAGAGCTCCA+TGG | - | chr4.4:19410370-19410389 | MS.gene35146:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19409968 | 19410474 | 19409968 | ID=MS.gene35146 |
| chr4.4 | mRNA | 19409968 | 19410474 | 19409968 | ID=MS.gene35146.t1;Parent=MS.gene35146 |
| chr4.4 | exon | 19409968 | 19410474 | 19409968 | ID=MS.gene35146.t1.exon1;Parent=MS.gene35146.t1 |
| chr4.4 | CDS | 19409968 | 19410474 | 19409968 | ID=cds.MS.gene35146.t1;Parent=MS.gene35146.t1 |
| Gene Sequence |
| Protein sequence |
