Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35205.t1 | XP_013457399.1 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 4.50E-268 | 933.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35205.t1 | Q8GX46 | 36.1 | 502 | 214 | 11 | 11 | 482 | 1 | 425 | 1.8e-68 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35205.t1 | G8A1V6 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 3.2e-268 | 933.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35205.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35205.t1 | MTR_4g094762 | 98.765 | 486 | 6 | 0 | 1 | 486 | 1 | 486 | 0.0 | 997 |
| MS.gene35205.t1 | MTR_1g056700 | 85.714 | 49 | 7 | 0 | 272 | 320 | 11 | 59 | 1.71e-21 | 89.0 |
| MS.gene35205.t1 | MTR_3g498695 | 28.643 | 199 | 129 | 5 | 278 | 470 | 285 | 476 | 3.07e-16 | 81.6 |
| MS.gene35205.t1 | MTR_3g498695 | 28.500 | 200 | 129 | 6 | 278 | 470 | 285 | 477 | 7.66e-15 | 77.0 |
| MS.gene35205.t1 | MTR_0194s0050 | 24.500 | 200 | 134 | 3 | 293 | 477 | 186 | 383 | 2.30e-12 | 68.9 |
| MS.gene35205.t1 | MTR_1g072320 | 30.872 | 149 | 85 | 4 | 293 | 433 | 471 | 609 | 4.24e-12 | 68.9 |
| MS.gene35205.t1 | MTR_8g024790 | 28.049 | 164 | 83 | 5 | 293 | 443 | 292 | 433 | 6.47e-12 | 67.8 |
| MS.gene35205.t1 | MTR_7g083900 | 24.468 | 188 | 129 | 4 | 291 | 470 | 285 | 467 | 2.39e-11 | 66.2 |
| MS.gene35205.t1 | MTR_7g083900 | 24.339 | 189 | 129 | 4 | 291 | 470 | 285 | 468 | 3.02e-11 | 65.9 |
| MS.gene35205.t1 | MTR_8g067280 | 31.579 | 171 | 110 | 3 | 293 | 460 | 463 | 629 | 3.71e-11 | 65.9 |
| MS.gene35205.t1 | MTR_5g030430 | 29.630 | 189 | 117 | 5 | 293 | 471 | 494 | 676 | 9.12e-11 | 64.7 |
| MS.gene35205.t1 | MTR_8g024770 | 30.968 | 155 | 93 | 6 | 293 | 443 | 280 | 424 | 9.85e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35205.t1 | AT2G31210 | 36.187 | 514 | 195 | 12 | 11 | 481 | 1 | 424 | 4.95e-90 | 281 |
| MS.gene35205.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 2 | 443 | 2.97e-82 | 262 |
| MS.gene35205.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 13 | 454 | 3.98e-82 | 262 |
| MS.gene35205.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene35205.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene35205.t1 | AT2G31215 | 50.704 | 71 | 35 | 0 | 284 | 354 | 15 | 85 | 1.02e-14 | 71.2 |
| MS.gene35205.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene35205.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene35205.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene35205.t1 | AT3G26744 | 27.976 | 168 | 111 | 3 | 291 | 453 | 306 | 468 | 4.11e-12 | 68.6 |
| MS.gene35205.t1 | AT1G32640 | 29.592 | 196 | 102 | 7 | 261 | 437 | 410 | 588 | 4.14e-12 | 68.9 |
| MS.gene35205.t1 | AT1G12860 | 27.439 | 164 | 113 | 3 | 291 | 453 | 266 | 424 | 6.35e-12 | 67.8 |
| MS.gene35205.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 6.67e-12 | 67.8 |
| MS.gene35205.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 8.16e-12 | 67.4 |
| MS.gene35205.t1 | AT5G46760 | 34.459 | 148 | 85 | 4 | 293 | 437 | 416 | 554 | 1.92e-11 | 66.6 |
| MS.gene35205.t1 | AT1G12860 | 29.054 | 148 | 99 | 3 | 291 | 437 | 266 | 408 | 2.08e-11 | 66.2 |
Find 129 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCATTGAATTATGAAAAT+TGG | 0.123720 | 4.4:-18729976 | None:intergenic |
| GATGGAGGGAGATGGGGATA+TGG | 0.225091 | 4.4:+18730187 | MS.gene35205:CDS |
| GACATCAACCTCACTGTCTT+TGG | 0.255758 | 4.4:-18730841 | None:intergenic |
| GATACACTTCTTGTACTAAA+TGG | 0.260683 | 4.4:-18729698 | None:intergenic |
| GTTGTTTGTGTTGTTATCAT+TGG | 0.285682 | 4.4:-18729490 | None:intergenic |
| GGACCCTAGTGTTCAGGATA+TGG | 0.288747 | 4.4:+18729734 | MS.gene35205:CDS |
| GCTGTTTGTGTCCAAGGTTT+TGG | 0.309859 | 4.4:+18730923 | MS.gene35205:CDS |
| GTCATTGAATTATGAAAATT+GGG | 0.338556 | 4.4:-18729975 | None:intergenic |
| AGTGAATGAACTGAAATTAT+TGG | 0.342875 | 4.4:+18730686 | MS.gene35205:CDS |
| AGGGATTGTAGCTTTGGTTA+TGG | 0.348857 | 4.4:-18729827 | None:intergenic |
| TTGGAACTTCATCATGTTGC+AGG | 0.351895 | 4.4:+18730957 | MS.gene35205:CDS |
| CAGATAGTTGGTGATGTTCT+TGG | 0.359747 | 4.4:-18729770 | None:intergenic |
| CAAAACATGCATGAACAAAA+TGG | 0.364773 | 4.4:+18729423 | MS.gene35205:CDS |
| AGCTGTAACATAAAGCCTTT+TGG | 0.367904 | 4.4:+18730774 | MS.gene35205:CDS |
| TTGTTTACCTTGGTGGGACT+TGG | 0.369352 | 4.4:-18730344 | None:intergenic |
| CTCCACAGCCTCCAGCTCTC+AGG | 0.376170 | 4.4:+18730084 | MS.gene35205:CDS |
| ATTGAACAACAACAAAATCT+TGG | 0.381255 | 4.4:+18729639 | MS.gene35205:CDS |
| ATGGAGGGAGATGGGGATAT+GGG | 0.387229 | 4.4:+18730188 | MS.gene35205:CDS |
| GTGATGAGATGGAGGGAGAT+GGG | 0.388952 | 4.4:+18730180 | MS.gene35205:CDS |
| TGGGAGTGCTGGAATTCAAT+AGG | 0.389828 | 4.4:+18730207 | MS.gene35205:CDS |
| ATGGTTATCCATGTTGTTGT+AGG | 0.394415 | 4.4:-18729679 | None:intergenic |
| TGGTCGAGGGATTGTAGCTT+TGG | 0.400036 | 4.4:-18729833 | None:intergenic |
| GATGTTTCCACTTATACAAA+TGG | 0.405425 | 4.4:+18729594 | MS.gene35205:CDS |
| CAACAGGGTGATTGATGTTA+TGG | 0.412367 | 4.4:+18731160 | MS.gene35205:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.414923 | 4.4:+18729999 | MS.gene35205:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4.4:+18729651 | MS.gene35205:CDS |
| TTTCTCAGTTGCAAAATGTT+TGG | 0.419556 | 4.4:-18730270 | None:intergenic |
| TTGTTTGTGTTGTTATCATT+GGG | 0.420602 | 4.4:-18729489 | None:intergenic |
| TTGCTTGCTGTTTGTGTCCA+AGG | 0.421896 | 4.4:+18730917 | MS.gene35205:CDS |
| AAAATCTTGGTTTGAACATA+GGG | 0.427616 | 4.4:+18729652 | MS.gene35205:CDS |
| TCCCTGAGAGCTGGAGGCTG+TGG | 0.430359 | 4.4:-18730086 | None:intergenic |
| ACACCTTCATCCATTGTGTT+GGG | 0.431032 | 4.4:-18729456 | None:intergenic |
| GAGTTGGGACCCTAGTGTTC+AGG | 0.436779 | 4.4:+18729728 | MS.gene35205:CDS |
| GATATTGTTGTTCAGATAGT+TGG | 0.438953 | 4.4:-18729782 | None:intergenic |
| GGTGATGAGATGGAGGGAGA+TGG | 0.442415 | 4.4:+18730179 | MS.gene35205:CDS |
| ATGCAAGTGCTATAGCCAAC+AGG | 0.446313 | 4.4:+18731144 | MS.gene35205:CDS |
| GAGGTTCTTATACTTCCATC+TGG | 0.453935 | 4.4:-18730801 | None:intergenic |
| GTGTTGTCTGATGATCCTAT+TGG | 0.454473 | 4.4:-18730014 | None:intergenic |
| AGTGAATCCATTTGTATAAG+TGG | 0.457197 | 4.4:-18729601 | None:intergenic |
| AGATGGGGATATGGGAGTGC+TGG | 0.457752 | 4.4:+18730196 | MS.gene35205:CDS |
| ATGCCAACCAACTCGAGAAA+TGG | 0.461019 | 4.4:+18730140 | MS.gene35205:CDS |
| AAGAGAACCATTTCTCGAGT+TGG | 0.464839 | 4.4:-18730147 | None:intergenic |
| ATAGCAATGAGTTCAGGTTC+AGG | 0.465445 | 4.4:+18729393 | None:intergenic |
| AACACCTTCATCCATTGTGT+TGG | 0.467861 | 4.4:-18729457 | None:intergenic |
| CAAAGAAGAGAGCAATTGAA+TGG | 0.475530 | 4.4:+18730293 | MS.gene35205:CDS |
| TAACATCATCATCGATAATC+CGG | 0.477440 | 4.4:-18730863 | None:intergenic |
| AATTATTGGTGGAGAAGAAA+AGG | 0.486241 | 4.4:+18730700 | MS.gene35205:CDS |
| TTATTGTTGTTTACCTTGGT+GGG | 0.486440 | 4.4:-18730350 | None:intergenic |
| TGGAGAAGAAAAGGCATGGA+AGG | 0.486907 | 4.4:+18730709 | MS.gene35205:CDS |
| CAAACTGTTTCAGAGGAAGA+AGG | 0.489618 | 4.4:+18730890 | MS.gene35205:CDS |
| AGTTGGGTTTGTCATGCAAA+TGG | 0.490408 | 4.4:-18729943 | None:intergenic |
| TTTATTGTTGTTTACCTTGG+TGG | 0.495717 | 4.4:-18730351 | None:intergenic |
| GCTTCTGTTGGCAAAGGAAG+AGG | 0.497466 | 4.4:+18730236 | MS.gene35205:CDS |
| TGGTGGAGGTGATGAGATGG+AGG | 0.498303 | 4.4:+18730172 | MS.gene35205:CDS |
| CTTCCATCTGGATCACCAAA+AGG | 0.498543 | 4.4:-18730789 | None:intergenic |
| GGGAGTGCTGGAATTCAATA+GGG | 0.499086 | 4.4:+18730208 | MS.gene35205:CDS |
| GGAAGGTTCAAAGGATATAG+AGG | 0.514568 | 4.4:-18730062 | None:intergenic |
| TTGAGAAGGTTAAGGACATC+CGG | 0.515412 | 4.4:-18729879 | None:intergenic |
| AGACAAATAGCAATGAGTTC+AGG | 0.516206 | 4.4:+18729387 | None:intergenic |
| CTGAGAGCTGGAGGCTGTGG+AGG | 0.518825 | 4.4:-18730083 | None:intergenic |
| TGTTTACCTTGGTGGGACTT+GGG | 0.518905 | 4.4:-18730343 | None:intergenic |
| AGTGTATCAGAACTCGAGTT+GGG | 0.519237 | 4.4:+18729713 | MS.gene35205:CDS |
| AGCATCTAGGTAAGTTGAGA+AGG | 0.519406 | 4.4:-18729893 | None:intergenic |
| GACTACAGCCTACTTATATG+TGG | 0.520235 | 4.4:-18731206 | None:intergenic |
| TCCACAGCCTCCAGCTCTCA+GGG | 0.522645 | 4.4:+18730085 | MS.gene35205:CDS |
| AGACCCTCATTACCCTTCAC+CGG | 0.523695 | 4.4:+18729860 | MS.gene35205:CDS |
| TAGTTTCTTGTTCAATAGCA+AGG | 0.524699 | 4.4:+18731001 | MS.gene35205:CDS |
| TGATGAGATGGAGGGAGATG+GGG | 0.524823 | 4.4:+18730181 | MS.gene35205:CDS |
| GAGCTGGAGGCTGTGGAGGA+AGG | 0.524927 | 4.4:-18730079 | None:intergenic |
| AATAGGGTCACTGCTTCTGT+TGG | 0.528001 | 4.4:+18730224 | MS.gene35205:CDS |
| TGAAACAATTCCCTGAGAGC+TGG | 0.529234 | 4.4:-18730095 | None:intergenic |
| GAATTTCAAGCCTTCTGTAG+AGG | 0.532912 | 4.4:+18729530 | MS.gene35205:CDS |
| CTGAAGTTCATCCAAAACCT+TGG | 0.538751 | 4.4:-18730934 | None:intergenic |
| GGCTGTGGAGGAAGGTTCAA+AGG | 0.549237 | 4.4:-18730071 | None:intergenic |
| TAGGTAAGTTGAGAAGGTTA+AGG | 0.550958 | 4.4:-18729887 | None:intergenic |
| ATGAGGGTCTAGAATGGTCG+AGG | 0.552417 | 4.4:-18729847 | None:intergenic |
| CAGGTCTTCCACATATAAGT+AGG | 0.553461 | 4.4:+18731198 | MS.gene35205:CDS |
| ACATCCGGTGAAGGGTAATG+AGG | 0.553656 | 4.4:-18729864 | None:intergenic |
| GATCCCAACACAATGGATGA+AGG | 0.553830 | 4.4:+18729453 | MS.gene35205:CDS |
| GAACCATTTCTCGAGTTGGT+TGG | 0.554382 | 4.4:-18730143 | None:intergenic |
| TTTGTCATGCAAATGGTGGA+TGG | 0.555450 | 4.4:-18729936 | None:intergenic |
| TGGAAAGTACAAAATCTTGA+GGG | 0.560743 | 4.4:+18730313 | MS.gene35205:CDS |
| GGAGAAGAAAAGGCATGGAA+GGG | 0.561748 | 4.4:+18730710 | MS.gene35205:CDS |
| AGGTTAAGGACATCCGGTGA+AGG | 0.563045 | 4.4:-18729873 | None:intergenic |
| TAATCCATATCCTGAACACT+AGG | 0.565325 | 4.4:-18729738 | None:intergenic |
| AAGACAGTGAGGTTGATGTC+CGG | 0.567804 | 4.4:+18730844 | MS.gene35205:CDS |
| ATGGAAAGTACAAAATCTTG+AGG | 0.570741 | 4.4:+18730312 | MS.gene35205:CDS |
| CATGTTGCAGGTGGACATGT+TGG | 0.572375 | 4.4:+18730969 | MS.gene35205:CDS |
| TTACAATCAAACTGTTTCAG+AGG | 0.573969 | 4.4:+18730883 | MS.gene35205:CDS |
| ATTGAATTATGAAAATTGGG+TGG | 0.575295 | 4.4:-18729972 | None:intergenic |
| TCACTGATGCAGGTAAATGA+AGG | 0.575350 | 4.4:+18731110 | MS.gene35205:intron |
| AGCAAAGATGAAGAGCATCT+AGG | 0.580041 | 4.4:-18729906 | None:intergenic |
| GTCACTGCTTCTGTTGGCAA+AGG | 0.580434 | 4.4:+18730230 | MS.gene35205:CDS |
| ACTGATAGAGCATCAGTGGT+TGG | 0.582304 | 4.4:+18730627 | MS.gene35205:CDS |
| AACAATTCCCTGAGAGCTGG+AGG | 0.583698 | 4.4:-18730092 | None:intergenic |
| TTGGTGGAGAAGAAAAGGCA+TGG | 0.589624 | 4.4:+18730705 | MS.gene35205:CDS |
| ATGGACACACAATATGCAGC+AGG | 0.590966 | 4.4:+18731179 | MS.gene35205:CDS |
| AGGGTAATGAGGGTCTAGAA+TGG | 0.594794 | 4.4:-18729853 | None:intergenic |
| GAATGAACTGAAATTATTGG+TGG | 0.601922 | 4.4:+18730689 | MS.gene35205:CDS |
| AAGTGTATCAGAACTCGAGT+TGG | 0.603471 | 4.4:+18729712 | MS.gene35205:CDS |
| TTGTTCAATGTCTACTGATG+AGG | 0.603690 | 4.4:-18729625 | None:intergenic |
| GGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4.4:-18730820 | None:intergenic |
| TATAAGTGGAAACATCATCA+AGG | 0.606570 | 4.4:-18729587 | None:intergenic |
| GGTTAAGGACATCCGGTGAA+GGG | 0.607008 | 4.4:-18729872 | None:intergenic |
| TAAGAACCTCATGGCTGCAG+AGG | 0.607611 | 4.4:+18730814 | MS.gene35205:CDS |
| GAACTTCATCATGTTGCAGG+TGG | 0.610349 | 4.4:+18730960 | MS.gene35205:CDS |
| CATAACATCAATCACCCTGT+TGG | 0.611438 | 4.4:-18731159 | None:intergenic |
| CATCCGGTGAAGGGTAATGA+GGG | 0.612093 | 4.4:-18729863 | None:intergenic |
| AGACAACACAAGCGGATCAT+CGG | 0.616516 | 4.4:+18730028 | MS.gene35205:CDS |
| TGGGTTTGTCATGCAAATGG+TGG | 0.620066 | 4.4:-18729940 | None:intergenic |
| GCAGACTGATAGAGCATCAG+TGG | 0.620695 | 4.4:+18730623 | MS.gene35205:intron |
| TGTTCAATGTCTACTGATGA+GGG | 0.621545 | 4.4:-18729624 | None:intergenic |
| AAGGCTTGAAATTCTCGTCA+AGG | 0.622448 | 4.4:-18729521 | None:intergenic |
| TAAGGTAGTTCCTCTACAGA+AGG | 0.625311 | 4.4:-18729540 | None:intergenic |
| TGTCTGATGATCCTATTGGA+AGG | 0.634988 | 4.4:-18730010 | None:intergenic |
| GGTGGAGGTGATGAGATGGA+GGG | 0.640062 | 4.4:+18730173 | MS.gene35205:CDS |
| TGCAAGTGCTATAGCCAACA+GGG | 0.647996 | 4.4:+18731145 | MS.gene35205:CDS |
| TCTGTTGGCAAAGGAAGAGG+AGG | 0.650064 | 4.4:+18730239 | MS.gene35205:CDS |
| ATGGAAGTATAAGAACCTCA+TGG | 0.653640 | 4.4:+18730805 | MS.gene35205:CDS |
| AATCCATATCCTGAACACTA+GGG | 0.654503 | 4.4:-18729737 | None:intergenic |
| ACAATATCAACAATTTATCG+AGG | 0.665388 | 4.4:+18729797 | MS.gene35205:CDS |
| TTGTTTCAATCTCTGCCTCG+AGG | 0.665573 | 4.4:+18730110 | MS.gene35205:CDS |
| GGATCATCAGACAACACAAG+CGG | 0.678009 | 4.4:+18730020 | MS.gene35205:CDS |
| AGGGAATACCTACAACAACA+TGG | 0.679432 | 4.4:+18729671 | MS.gene35205:CDS |
| TTGCTTTGATCCCAACACAA+TGG | 0.687353 | 4.4:+18729446 | MS.gene35205:CDS |
| TCTCATCCCAAGTCCCACCA+AGG | 0.687512 | 4.4:+18730337 | MS.gene35205:CDS |
| TGAGGGTCTAGAATGGTCGA+GGG | 0.709529 | 4.4:-18729846 | None:intergenic |
| GAGGAAATCCAAAGACAGTG+AGG | 0.714492 | 4.4:+18730833 | MS.gene35205:CDS |
| GTTGGCATGCTATAGCCTCG+AGG | 0.726151 | 4.4:-18730125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATTACATTTTTAG+TGG | + | chr4.4:18730530-18730549 | MS.gene35205:intron | 10.0% |
| !! | TAGAATTATTACATTTGATT+TGG | + | chr4.4:18731063-18731082 | MS.gene35205:intron | 15.0% |
| !! | TGGTTATATATTAAACTATA+AGG | + | chr4.4:18731083-18731102 | MS.gene35205:intron | 15.0% |
| !! | AGTCATTGAATTATGAAAAT+TGG | - | chr4.4:18729979-18729998 | None:intergenic | 20.0% |
| !! | GATTCAAAACATATATCAAT+TGG | - | chr4.4:18730446-18730465 | None:intergenic | 20.0% |
| !! | GTCATTGAATTATGAAAATT+GGG | - | chr4.4:18729978-18729997 | None:intergenic | 20.0% |
| !! | TTCATGGATAAAATTATACA+TGG | - | chr4.4:18730397-18730416 | None:intergenic | 20.0% |
| !! | TTGAATCTTGAATTATATTG+AGG | + | chr4.4:18730459-18730478 | MS.gene35205:intron | 20.0% |
| ! | ACAATATCAACAATTTATCG+AGG | + | chr4.4:18729797-18729816 | MS.gene35205:CDS | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | + | chr4.4:18730686-18730705 | MS.gene35205:CDS | 25.0% |
| ! | ATTGAACAACAACAAAATCT+TGG | + | chr4.4:18729639-18729658 | MS.gene35205:CDS | 25.0% |
| ! | ATTGAATTATGAAAATTGGG+TGG | - | chr4.4:18729975-18729994 | None:intergenic | 25.0% |
| ! | CTATTTGATACCATGATTAA+CGG | + | chr4.4:18730584-18730603 | MS.gene35205:intron | 25.0% |
| ! | TATTTGATACCATGATTAAC+GGG | + | chr4.4:18730585-18730604 | MS.gene35205:intron | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4.4:18729652-18729671 | MS.gene35205:CDS | 25.0% |
| !! | CATAATTCAATGACTTTTCT+TGG | + | chr4.4:18729984-18730003 | MS.gene35205:CDS | 25.0% |
| !! | TTGTTTGTGTTGTTATCATT+GGG | - | chr4.4:18729492-18729511 | None:intergenic | 25.0% |
| !!! | ATGTTTATTGTTGTTTACCT+TGG | - | chr4.4:18730357-18730376 | None:intergenic | 25.0% |
| AATTATTGGTGGAGAAGAAA+AGG | + | chr4.4:18730700-18730719 | MS.gene35205:CDS | 30.0% | |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4.4:18729604-18729623 | None:intergenic | 30.0% | |
| CAAAACATGCATGAACAAAA+TGG | + | chr4.4:18729423-18729442 | MS.gene35205:CDS | 30.0% | |
| GAATGAACTGAAATTATTGG+TGG | + | chr4.4:18730689-18730708 | MS.gene35205:CDS | 30.0% | |
| GATACACTTCTTGTACTAAA+TGG | - | chr4.4:18729701-18729720 | None:intergenic | 30.0% | |
| GATGTTTCCACTTATACAAA+TGG | + | chr4.4:18729594-18729613 | MS.gene35205:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | - | chr4.4:18730866-18730885 | None:intergenic | 30.0% | |
| TAGTTTCTTGTTCAATAGCA+AGG | + | chr4.4:18731001-18731020 | MS.gene35205:CDS | 30.0% | |
| TATAAGTGGAAACATCATCA+AGG | - | chr4.4:18729590-18729609 | None:intergenic | 30.0% | |
| TCAAATAGAGATTCAAATCG+TGG | - | chr4.4:18730572-18730591 | None:intergenic | 30.0% | |
| TTACAATCAAACTGTTTCAG+AGG | + | chr4.4:18730883-18730902 | MS.gene35205:CDS | 30.0% | |
| TTTCTCAGTTGCAAAATGTT+TGG | - | chr4.4:18730273-18730292 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | + | chr4.4:18730312-18730331 | MS.gene35205:CDS | 30.0% |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4.4:18729651-18729670 | MS.gene35205:CDS | 30.0% |
| ! | GATATTGTTGTTCAGATAGT+TGG | - | chr4.4:18729785-18729804 | None:intergenic | 30.0% |
| ! | GTTGTTTGTGTTGTTATCAT+TGG | - | chr4.4:18729493-18729512 | None:intergenic | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | + | chr4.4:18730313-18730332 | MS.gene35205:CDS | 30.0% |
| !! | GAATTTTGATGATTGTGGTA+AGG | - | chr4.4:18729561-18729580 | None:intergenic | 30.0% |
| !! | GTTGTGAATTTTGATGATTG+TGG | - | chr4.4:18729566-18729585 | None:intergenic | 30.0% |
| !! | TTATTGTTGTTTACCTTGGT+GGG | - | chr4.4:18730353-18730372 | None:intergenic | 30.0% |
| !! | TTTATTGTTGTTTACCTTGG+TGG | - | chr4.4:18730354-18730373 | None:intergenic | 30.0% |
| AATCCATATCCTGAACACTA+GGG | - | chr4.4:18729740-18729759 | None:intergenic | 35.0% | |
| ATCAATTGGCAACAGAAAAG+TGG | - | chr4.4:18730432-18730451 | None:intergenic | 35.0% | |
| ATGGTTATCCATGTTGTTGT+AGG | - | chr4.4:18729682-18729701 | None:intergenic | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+TGG | + | chr4.4:18730293-18730312 | MS.gene35205:CDS | 35.0% | |
| TAATCCATATCCTGAACACT+AGG | - | chr4.4:18729741-18729760 | None:intergenic | 35.0% | |
| TAGAGATTCAAATCGTGGAA+CGG | - | chr4.4:18730567-18730586 | None:intergenic | 35.0% | |
| TGTTCAATGTCTACTGATGA+GGG | - | chr4.4:18729627-18729646 | None:intergenic | 35.0% | |
| TTCTTGTTCAATAGCAAGGT+TGG | + | chr4.4:18731005-18731024 | MS.gene35205:intron | 35.0% | |
| TTGTTCAATGTCTACTGATG+AGG | - | chr4.4:18729628-18729647 | None:intergenic | 35.0% | |
| ! | AGAAATGGTTCTCTTTTTGG+TGG | + | chr4.4:18730155-18730174 | MS.gene35205:CDS | 35.0% |
| ! | AGCTGTAACATAAAGCCTTT+TGG | + | chr4.4:18730774-18730793 | MS.gene35205:CDS | 35.0% |
| ! | ATGGAAGTATAAGAACCTCA+TGG | + | chr4.4:18730805-18730824 | MS.gene35205:CDS | 35.0% |
| ! | TAGGTAAGTTGAGAAGGTTA+AGG | - | chr4.4:18729890-18729909 | None:intergenic | 35.0% |
| ! | TCGAGAAATGGTTCTCTTTT+TGG | + | chr4.4:18730152-18730171 | MS.gene35205:CDS | 35.0% |
| !! | AAATTGGGTGGATTTTGAGT+TGG | - | chr4.4:18729963-18729982 | None:intergenic | 35.0% |
| !!! | AATTGGGTGGATTTTGAGTT+GGG | - | chr4.4:18729962-18729981 | None:intergenic | 35.0% |
| AACACCTTCATCCATTGTGT+TGG | - | chr4.4:18729460-18729479 | None:intergenic | 40.0% | |
| AAGAGAACCATTTCTCGAGT+TGG | - | chr4.4:18730150-18730169 | None:intergenic | 40.0% | |
| AAGGCTTGAAATTCTCGTCA+AGG | - | chr4.4:18729524-18729543 | None:intergenic | 40.0% | |
| AAGTGTATCAGAACTCGAGT+TGG | + | chr4.4:18729712-18729731 | MS.gene35205:CDS | 40.0% | |
| ACACCTTCATCCATTGTGTT+GGG | - | chr4.4:18729459-18729478 | None:intergenic | 40.0% | |
| AGGGAATACCTACAACAACA+TGG | + | chr4.4:18729671-18729690 | MS.gene35205:CDS | 40.0% | |
| AGTGTATCAGAACTCGAGTT+GGG | + | chr4.4:18729713-18729732 | MS.gene35205:CDS | 40.0% | |
| AGTTGGGTTTGTCATGCAAA+TGG | - | chr4.4:18729946-18729965 | None:intergenic | 40.0% | |
| ATAAGGTGTATCACTGATGC+AGG | + | chr4.4:18731100-18731119 | MS.gene35205:intron | 40.0% | |
| CAAACTGTTTCAGAGGAAGA+AGG | + | chr4.4:18730890-18730909 | MS.gene35205:CDS | 40.0% | |
| CAACAGGGTGATTGATGTTA+TGG | + | chr4.4:18731160-18731179 | MS.gene35205:CDS | 40.0% | |
| CAGGTCTTCCACATATAAGT+AGG | + | chr4.4:18731198-18731217 | MS.gene35205:CDS | 40.0% | |
| CATAACATCAATCACCCTGT+TGG | - | chr4.4:18731162-18731181 | None:intergenic | 40.0% | |
| CTGAAGTTCATCCAAAACCT+TGG | - | chr4.4:18730937-18730956 | None:intergenic | 40.0% | |
| GAATTTCAAGCCTTCTGTAG+AGG | + | chr4.4:18729530-18729549 | MS.gene35205:CDS | 40.0% | |
| GAGGTTCTTATACTTCCATC+TGG | - | chr4.4:18730804-18730823 | None:intergenic | 40.0% | |
| GGAAGGTTCAAAGGATATAG+AGG | - | chr4.4:18730065-18730084 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | - | chr4.4:18730017-18730036 | None:intergenic | 40.0% | |
| TAAGGTAGTTCCTCTACAGA+AGG | - | chr4.4:18729543-18729562 | None:intergenic | 40.0% | |
| TCACTGATGCAGGTAAATGA+AGG | + | chr4.4:18731110-18731129 | MS.gene35205:intron | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | - | chr4.4:18730013-18730032 | None:intergenic | 40.0% | |
| TTGAGAAGGTTAAGGACATC+CGG | - | chr4.4:18729882-18729901 | None:intergenic | 40.0% | |
| TTGCTTTGATCCCAACACAA+TGG | + | chr4.4:18729446-18729465 | MS.gene35205:CDS | 40.0% | |
| TTGGAACTTCATCATGTTGC+AGG | + | chr4.4:18730957-18730976 | MS.gene35205:CDS | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4.4:18729999-18730018 | MS.gene35205:CDS | 40.0% | |
| ! | AGCATCTAGGTAAGTTGAGA+AGG | - | chr4.4:18729896-18729915 | None:intergenic | 40.0% |
| ! | TTTGTCATGCAAATGGTGGA+TGG | - | chr4.4:18729939-18729958 | None:intergenic | 40.0% |
| !! | AATGGTTCTCTTTTTGGTGG+AGG | + | chr4.4:18730158-18730177 | MS.gene35205:CDS | 40.0% |
| !! | AGCAAAGATGAAGAGCATCT+AGG | - | chr4.4:18729909-18729928 | None:intergenic | 40.0% |
| !! | AGGGATTGTAGCTTTGGTTA+TGG | - | chr4.4:18729830-18729849 | None:intergenic | 40.0% |
| !! | CAGATAGTTGGTGATGTTCT+TGG | - | chr4.4:18729773-18729792 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATGAACTTCAGT+TGG | + | chr4.4:18730938-18730957 | MS.gene35205:CDS | 40.0% |
| AATAGGGTCACTGCTTCTGT+TGG | + | chr4.4:18730224-18730243 | MS.gene35205:CDS | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | + | chr4.4:18730028-18730047 | MS.gene35205:CDS | 45.0% | |
| AGGGTAATGAGGGTCTAGAA+TGG | - | chr4.4:18729856-18729875 | None:intergenic | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | + | chr4.4:18731144-18731163 | MS.gene35205:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | + | chr4.4:18730140-18730159 | MS.gene35205:CDS | 45.0% | |
| ATGGACACACAATATGCAGC+AGG | + | chr4.4:18731179-18731198 | MS.gene35205:CDS | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | - | chr4.4:18730428-18730447 | None:intergenic | 45.0% | |
| CCAAAACTGCCCGTTAATCA+TGG | - | chr4.4:18730597-18730616 | None:intergenic | 45.0% | |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4.4:18730792-18730811 | None:intergenic | 45.0% | |
| GAACTTCATCATGTTGCAGG+TGG | + | chr4.4:18730960-18730979 | MS.gene35205:CDS | 45.0% | |
| GACATCAACCTCACTGTCTT+TGG | - | chr4.4:18730844-18730863 | None:intergenic | 45.0% | |
| GAGGAAATCCAAAGACAGTG+AGG | + | chr4.4:18730833-18730852 | MS.gene35205:CDS | 45.0% | |
| GATCCCAACACAATGGATGA+AGG | + | chr4.4:18729453-18729472 | MS.gene35205:CDS | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | + | chr4.4:18730020-18730039 | MS.gene35205:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | - | chr4.4:18730098-18730117 | None:intergenic | 45.0% | |
| TGCAAGTGCTATAGCCAACA+GGG | + | chr4.4:18731145-18731164 | MS.gene35205:CDS | 45.0% | |
| TGGGTTTGTCATGCAAATGG+TGG | - | chr4.4:18729943-18729962 | None:intergenic | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | - | chr4.4:18730346-18730365 | None:intergenic | 45.0% | |
| TTGGTGGAGAAGAAAAGGCA+TGG | + | chr4.4:18730705-18730724 | MS.gene35205:CDS | 45.0% | |
| TTGTTTACCTTGGTGGGACT+TGG | - | chr4.4:18730347-18730366 | None:intergenic | 45.0% | |
| TTGTTTCAATCTCTGCCTCG+AGG | + | chr4.4:18730110-18730129 | MS.gene35205:CDS | 45.0% | |
| ! | ACTGATAGAGCATCAGTGGT+TGG | + | chr4.4:18730627-18730646 | MS.gene35205:CDS | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | + | chr4.4:18730923-18730942 | MS.gene35205:CDS | 45.0% |
| ! | GGAGAAGAAAAGGCATGGAA+GGG | + | chr4.4:18730710-18730729 | MS.gene35205:CDS | 45.0% |
| ! | TGGAGAAGAAAAGGCATGGA+AGG | + | chr4.4:18730709-18730728 | MS.gene35205:CDS | 45.0% |
| ! | TTTTGGTGGAGGTGATGAGA+TGG | + | chr4.4:18730169-18730188 | MS.gene35205:CDS | 45.0% |
| !! | AAGACAGTGAGGTTGATGTC+CGG | + | chr4.4:18730844-18730863 | MS.gene35205:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4.4:18730786-18730805 | MS.gene35205:CDS | 45.0% |
| !! | CCATGATTAACGGGCAGTTT+TGG | + | chr4.4:18730594-18730613 | MS.gene35205:intron | 45.0% |
| !! | GAACCATTTCTCGAGTTGGT+TGG | - | chr4.4:18730146-18730165 | None:intergenic | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | + | chr4.4:18730208-18730227 | MS.gene35205:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | + | chr4.4:18730207-18730226 | MS.gene35205:CDS | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | + | chr4.4:18730917-18730936 | MS.gene35205:CDS | 45.0% |
| AACAATTCCCTGAGAGCTGG+AGG | - | chr4.4:18730095-18730114 | None:intergenic | 50.0% | |
| ACATCCGGTGAAGGGTAATG+AGG | - | chr4.4:18729867-18729886 | None:intergenic | 50.0% | |
| AGACCCTCATTACCCTTCAC+CGG | + | chr4.4:18729860-18729879 | MS.gene35205:CDS | 50.0% | |
| AGGTTAAGGACATCCGGTGA+AGG | - | chr4.4:18729876-18729895 | None:intergenic | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | + | chr4.4:18730188-18730207 | MS.gene35205:CDS | 50.0% | |
| CATCCGGTGAAGGGTAATGA+GGG | - | chr4.4:18729866-18729885 | None:intergenic | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4.4:18730969-18730988 | MS.gene35205:CDS | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | + | chr4.4:18730236-18730255 | MS.gene35205:CDS | 50.0% | |
| GGACCCTAGTGTTCAGGATA+TGG | + | chr4.4:18729734-18729753 | MS.gene35205:CDS | 50.0% | |
| GGTTAAGGACATCCGGTGAA+GGG | - | chr4.4:18729875-18729894 | None:intergenic | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | + | chr4.4:18730230-18730249 | MS.gene35205:CDS | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | + | chr4.4:18730180-18730199 | MS.gene35205:CDS | 50.0% | |
| GTGGCTGGTGACTCAATTCA+TGG | - | chr4.4:18730413-18730432 | None:intergenic | 50.0% | |
| TAAGAACCTCATGGCTGCAG+AGG | + | chr4.4:18730814-18730833 | MS.gene35205:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | + | chr4.4:18730239-18730258 | MS.gene35205:CDS | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | + | chr4.4:18730181-18730200 | MS.gene35205:CDS | 50.0% | |
| TGGTCGAGGGATTGTAGCTT+TGG | - | chr4.4:18729836-18729855 | None:intergenic | 50.0% | |
| ! | ATGAGGGTCTAGAATGGTCG+AGG | - | chr4.4:18729850-18729869 | None:intergenic | 50.0% |
| ! | GCAGACTGATAGAGCATCAG+TGG | + | chr4.4:18730623-18730642 | MS.gene35205:intron | 50.0% |
| ! | TGAGGGTCTAGAATGGTCGA+GGG | - | chr4.4:18729849-18729868 | None:intergenic | 50.0% |
| GAGTTGGGACCCTAGTGTTC+AGG | + | chr4.4:18729728-18729747 | MS.gene35205:CDS | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | + | chr4.4:18730187-18730206 | MS.gene35205:CDS | 55.0% | |
| GGATTTCCTCTGCAGCCATG+AGG | - | chr4.4:18730823-18730842 | None:intergenic | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | - | chr4.4:18730074-18730093 | None:intergenic | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | + | chr4.4:18730179-18730198 | MS.gene35205:CDS | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | + | chr4.4:18730173-18730192 | MS.gene35205:CDS | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | - | chr4.4:18730128-18730147 | None:intergenic | 55.0% | |
| TCTCATCCCAAGTCCCACCA+AGG | + | chr4.4:18730337-18730356 | MS.gene35205:CDS | 55.0% | |
| TGGTGGAGGTGATGAGATGG+AGG | + | chr4.4:18730172-18730191 | MS.gene35205:CDS | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | + | chr4.4:18730196-18730215 | MS.gene35205:CDS | 55.0% |
| TCCACAGCCTCCAGCTCTCA+GGG | + | chr4.4:18730085-18730104 | MS.gene35205:CDS | 60.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | + | chr4.4:18730084-18730103 | MS.gene35205:CDS | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | - | chr4.4:18730086-18730105 | None:intergenic | 65.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | - | chr4.4:18730082-18730101 | None:intergenic | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | - | chr4.4:18730089-18730108 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18729399 | 18731226 | 18729399 | ID=MS.gene35205 |
| chr4.4 | mRNA | 18729399 | 18731226 | 18729399 | ID=MS.gene35205.t1;Parent=MS.gene35205 |
| chr4.4 | exon | 18729399 | 18730358 | 18729399 | ID=MS.gene35205.t1.exon1;Parent=MS.gene35205.t1 |
| chr4.4 | CDS | 18729399 | 18730358 | 18729399 | ID=cds.MS.gene35205.t1;Parent=MS.gene35205.t1 |
| chr4.4 | exon | 18730627 | 18731022 | 18730627 | ID=MS.gene35205.t1.exon2;Parent=MS.gene35205.t1 |
| chr4.4 | CDS | 18730627 | 18731022 | 18730627 | ID=cds.MS.gene35205.t1;Parent=MS.gene35205.t1 |
| chr4.4 | exon | 18731122 | 18731226 | 18731122 | ID=MS.gene35205.t1.exon3;Parent=MS.gene35205.t1 |
| chr4.4 | CDS | 18731122 | 18731226 | 18731122 | ID=cds.MS.gene35205.t1;Parent=MS.gene35205.t1 |
| Gene Sequence |
| Protein sequence |
