Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35225.t1 | RHN42288.1 | 94.7 | 679 | 36 | 0 | 1 | 679 | 93 | 771 | 0.00E+00 | 1117.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35225.t1 | Q9ZUM0 | 39.8 | 588 | 260 | 26 | 4 | 559 | 9 | 534 | 1.6e-78 | 295.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35225.t1 | A0A396GPF7 | 94.7 | 679 | 36 | 0 | 1 | 679 | 93 | 771 | 0.0e+00 | 1117.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35225.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35225.t1 | MTR_4g114040 | 57.851 | 121 | 34 | 1 | 25 | 145 | 7 | 110 | 1.22e-42 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35225.t1 | AT2G02160 | 39.872 | 627 | 284 | 28 | 3 | 596 | 5 | 571 | 5.78e-105 | 334 |
Find 190 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAGTCCTTCTTTCTATT+TGG | 0.122370 | 4.4:+18467073 | None:intergenic |
| ATTTGGGCTGATCCCTTTCT+AGG | 0.173898 | 4.4:+18467090 | None:intergenic |
| AGAATTTCACTAAGTGGTTT+TGG | 0.245906 | 4.4:+18466499 | None:intergenic |
| TATCATGGGGAAGATGAATT+TGG | 0.267482 | 4.4:-18467276 | MS.gene35225:CDS |
| GCTTGTTTACTACCATTATA+AGG | 0.280011 | 4.4:+18467810 | None:intergenic |
| TTTCTCAGAGAGTCGTCTCC+TGG | 0.281678 | 4.4:-18467342 | MS.gene35225:CDS |
| AGTCTTGCTGAACTTAAGTA+TGG | 0.284200 | 4.4:-18466616 | MS.gene35225:CDS |
| ATGAGTCCTTCTTTCTATTT+GGG | 0.297001 | 4.4:+18467074 | None:intergenic |
| TTCTCCCTTGACATGCAAAA+AGG | 0.299512 | 4.4:-18469174 | MS.gene35225:intron |
| TCCTCTTTCCAAATGATTGT+TGG | 0.310747 | 4.4:+18466572 | None:intergenic |
| TTGGAAAGAGGAAAAGCTTC+AGG | 0.319306 | 4.4:-18466561 | MS.gene35225:CDS |
| CAGCCTCTTGACGGGTTGTT+AGG | 0.337201 | 4.4:-18467915 | MS.gene35225:CDS |
| CAACACCTGCAACATTTGCT+TGG | 0.342566 | 4.4:+18467589 | None:intergenic |
| CCAAAAGGTTTCTTAAAACT+TGG | 0.344005 | 4.4:+18467648 | None:intergenic |
| AAGAACAACACCAATCTTCT+TGG | 0.345542 | 4.4:+18466138 | None:intergenic |
| ACCCATGCACCGCCTTATAA+TGG | 0.352929 | 4.4:-18467822 | MS.gene35225:CDS |
| GGAAGAAGAGTCCAAGATTC+AGG | 0.353435 | 4.4:-18466368 | MS.gene35225:CDS |
| CCGGCAACTGCTGCTGCTGC+TGG | 0.354940 | 4.4:-18467885 | MS.gene35225:CDS |
| GCCGTTTCCCTTCCTGCGCT+TGG | 0.358186 | 4.4:+18466996 | None:intergenic |
| ATCAGTGGCCGGTTGTCATC+TGG | 0.358804 | 4.4:-18466763 | MS.gene35225:CDS |
| TCGTATTCATTCAAAGAGTC+TGG | 0.359110 | 4.4:+18467225 | None:intergenic |
| ATCTCTCATTTGAAGGTAAC+TGG | 0.359901 | 4.4:+18466911 | None:intergenic |
| AGAAATTCTGATTACTATCA+TGG | 0.361394 | 4.4:-18467291 | MS.gene35225:CDS |
| TTACTGCCATTGGTAGGGTT+TGG | 0.386685 | 4.4:+18467720 | None:intergenic |
| AATAATGACCAACAATCATT+TGG | 0.389220 | 4.4:-18466580 | MS.gene35225:CDS |
| CGTCATTGTCCTTACCACTA+TGG | 0.395917 | 4.4:+18467367 | None:intergenic |
| ATCCTAGAGATTGTTGGTAT+TGG | 0.401206 | 4.4:-18468113 | MS.gene35225:CDS |
| TTTCTAGGTTCCCAGCCATA+TGG | 0.401770 | 4.4:+18467105 | None:intergenic |
| TTGACAGATCTCTCATTTGA+AGG | 0.402339 | 4.4:+18466904 | None:intergenic |
| ATCATATGAGTCATAACCTT+GGG | 0.402504 | 4.4:+18467140 | None:intergenic |
| TCCATCAGCAGCCTGAATCT+TGG | 0.402576 | 4.4:+18466357 | None:intergenic |
| CTATGGAAATTGTGATCATC+TGG | 0.404436 | 4.4:+18467384 | None:intergenic |
| AAGTTTCTCCTCTCGTCATC+TGG | 0.405913 | 4.4:+18466685 | None:intergenic |
| CGATGAAGCTGCCGAAGATC+AGG | 0.408429 | 4.4:-18466281 | MS.gene35225:CDS |
| AAATCAAGAGCAAGAATATA+TGG | 0.412298 | 4.4:-18466185 | MS.gene35225:CDS |
| GTACATCATCTTCATATTGT+TGG | 0.423888 | 4.4:+18466533 | None:intergenic |
| AGGATCCAGGATAGATTAAG+AGG | 0.436261 | 4.4:-18466715 | MS.gene35225:CDS |
| ACTTCCCAAGCAAATGTTGC+AGG | 0.436467 | 4.4:-18467594 | MS.gene35225:CDS |
| ACCTTCATACTCCTGATCTT+CGG | 0.437886 | 4.4:+18466270 | None:intergenic |
| GAAGATGATGTACCATTTGA+AGG | 0.438650 | 4.4:-18466523 | MS.gene35225:CDS |
| GAATCTGAAGTTGTGGCTGT+TGG | 0.444668 | 4.4:+18469270 | None:intergenic |
| ACCTTCCTCTTAATCTATCC+TGG | 0.445108 | 4.4:+18466710 | None:intergenic |
| AACACCTGCAACATTTGCTT+GGG | 0.445165 | 4.4:+18467590 | None:intergenic |
| TCCTTCAGAATTTCACTAAG+TGG | 0.448374 | 4.4:+18466493 | None:intergenic |
| AGGTGACTGTCACCACCATT+TGG | 0.450256 | 4.4:+18466850 | None:intergenic |
| GAAATTCTGATTACTATCAT+GGG | 0.451701 | 4.4:-18467290 | MS.gene35225:CDS |
| GTCCCTCTCTAGGTGACTGC+TGG | 0.452700 | 4.4:+18466801 | None:intergenic |
| ACACGATTAGACCGGGCATT+AGG | 0.453044 | 4.4:+18467423 | None:intergenic |
| GATTGTTGGTATTGGTTGAA+TGG | 0.456384 | 4.4:-18468105 | MS.gene35225:CDS |
| ATCTGTGGCGTGGGGACAGA+TGG | 0.457178 | 4.4:+18467861 | None:intergenic |
| ATATGGCTGGGAACCTAGAA+AGG | 0.461958 | 4.4:-18467103 | MS.gene35225:CDS |
| CGGATGACGGAATGAACACT+TGG | 0.466296 | 4.4:+18468068 | None:intergenic |
| CTCAAGATGAAGCCTTGAAA+AGG | 0.468804 | 4.4:-18469223 | MS.gene35225:CDS |
| AATATATGGAAGATGAAGAT+GGG | 0.468862 | 4.4:-18466171 | MS.gene35225:CDS |
| AACTTGGATTCTCAGCTCCT+TGG | 0.469416 | 4.4:+18467664 | None:intergenic |
| AATCTGAAGTTGTGGCTGTT+GGG | 0.469633 | 4.4:+18469271 | None:intergenic |
| TGACTCTAGCATACTCACTA+TGG | 0.470886 | 4.4:+18468136 | None:intergenic |
| TCTGAGACCTCAACACTGTC+AGG | 0.480290 | 4.4:+18467036 | None:intergenic |
| GCATTAGGCCCATTGGTTGG+CGG | 0.480720 | 4.4:+18467438 | None:intergenic |
| AGAATAAATCTTCCACCAAA+TGG | 0.481461 | 4.4:-18466865 | MS.gene35225:CDS |
| AATGAAGGAATTACCGAAAA+CGG | 0.483376 | 4.4:-18466409 | MS.gene35225:CDS |
| CATGTACCGCCACCACCTGC+AGG | 0.483658 | 4.4:-18467504 | MS.gene35225:CDS |
| GATGACTTTGCCAAGAAGAT+TGG | 0.484215 | 4.4:-18466148 | MS.gene35225:CDS |
| GCCTCATGAGGGAAGGATCC+AGG | 0.484648 | 4.4:-18466728 | MS.gene35225:CDS |
| TACCATTATAAGGCGGTGCA+TGG | 0.485504 | 4.4:+18467820 | None:intergenic |
| CAACCAATGGGCCTAATGCC+CGG | 0.485721 | 4.4:-18467434 | MS.gene35225:CDS |
| TTAGGCCCATTGGTTGGCGG+TGG | 0.486496 | 4.4:+18467441 | None:intergenic |
| TTCTCAGAGAGTCGTCTCCT+GGG | 0.488365 | 4.4:-18467341 | MS.gene35225:CDS |
| GAAATTCTGAAGGAGAAGAA+AGG | 0.491627 | 4.4:-18466484 | MS.gene35225:CDS |
| TCCAAGCGCAGGAAGGGAAA+CGG | 0.492405 | 4.4:-18466997 | MS.gene35225:CDS |
| GAATATATGGAAGATGAAGA+TGG | 0.492589 | 4.4:-18466172 | MS.gene35225:CDS |
| CAAGTGTTCATTCCGTCATC+CGG | 0.493411 | 4.4:-18468067 | MS.gene35225:intron |
| TTTACATGCAGCCTCTTGAC+GGG | 0.494749 | 4.4:-18467923 | MS.gene35225:intron |
| GTCATCATGTTTGCTACTGT+GGG | 0.496484 | 4.4:+18466438 | None:intergenic |
| TGGATTCTCAGCTCCTTGGT+TGG | 0.496891 | 4.4:+18467668 | None:intergenic |
| TGGTAGGGTTTGGTCCATGC+AGG | 0.497954 | 4.4:+18467730 | None:intergenic |
| TCCAAGATTCAGGCTGCTGA+TGG | 0.498699 | 4.4:-18466358 | MS.gene35225:CDS |
| GAAGCCTTCCAGATGACAAC+CGG | 0.499100 | 4.4:+18466755 | None:intergenic |
| AAGGCTTCATCTTGAGGAGA+AGG | 0.502963 | 4.4:+18469230 | None:intergenic |
| TTATCTAACCCTGCAGGTGG+TGG | 0.503622 | 4.4:+18467495 | None:intergenic |
| TCATCTTGAGGAGAAGGTGT+TGG | 0.504643 | 4.4:+18469236 | None:intergenic |
| TGGAAAGAGGAAAAGCTTCA+GGG | 0.504669 | 4.4:-18466560 | MS.gene35225:CDS |
| CTGAAGGAGAAGAAAGGAGT+TGG | 0.505461 | 4.4:-18466478 | MS.gene35225:CDS |
| GTATGAGTATGAACAAGTTG+AGG | 0.507239 | 4.4:-18466212 | MS.gene35225:CDS |
| AGTTCTCCACCGCCAACCAA+TGG | 0.509937 | 4.4:-18467447 | MS.gene35225:CDS |
| TCTTTGAATGAATACGATGT+AGG | 0.510886 | 4.4:-18467219 | MS.gene35225:CDS |
| AAAGGAGTTGGAGCTGGTGC+AGG | 0.510993 | 4.4:-18466466 | MS.gene35225:CDS |
| GTTCTCCACCGCCAACCAAT+GGG | 0.511996 | 4.4:-18467446 | MS.gene35225:CDS |
| CATGATGACAATAAGAATGA+AGG | 0.513449 | 4.4:-18466424 | MS.gene35225:CDS |
| AGACCGGGCATTAGGCCCAT+TGG | 0.518925 | 4.4:+18467431 | None:intergenic |
| ACCAACAATCATTTGGAAAG+AGG | 0.519008 | 4.4:-18466573 | MS.gene35225:CDS |
| TGTCATCATGTTTGCTACTG+TGG | 0.520700 | 4.4:+18466437 | None:intergenic |
| TCTAACCCTGCAGGTGGTGG+CGG | 0.521071 | 4.4:+18467498 | None:intergenic |
| CTTTGAATGAATACGATGTA+GGG | 0.521877 | 4.4:-18467218 | MS.gene35225:CDS |
| CGGAACATTGTCAGAGAGCA+AGG | 0.523049 | 4.4:-18466389 | MS.gene35225:CDS |
| GATCACATGCAAGAGCCATA+TGG | 0.523697 | 4.4:-18467120 | MS.gene35225:CDS |
| GAGTCAATCCTAGAGATTGT+TGG | 0.524919 | 4.4:-18468119 | MS.gene35225:CDS |
| TATGAGTATGAACAAGTTGA+GGG | 0.525313 | 4.4:-18466211 | MS.gene35225:CDS |
| GTTGCCGCAATCTGTGGCGT+GGG | 0.527866 | 4.4:+18467852 | None:intergenic |
| ACATGCAAGAGCCATATGGC+TGG | 0.534478 | 4.4:-18467116 | MS.gene35225:CDS |
| GCAGCAGCAGCAGTTGCCGG+TGG | 0.534503 | 4.4:+18467888 | None:intergenic |
| GCCTCATTATCTAACCCTGC+AGG | 0.535034 | 4.4:+18467489 | None:intergenic |
| GTGGAAGATTTATTCTGCCT+CGG | 0.535587 | 4.4:+18466872 | None:intergenic |
| ACCTGCAGGGTTAGATAATG+AGG | 0.535845 | 4.4:-18467490 | MS.gene35225:CDS |
| GAGAAGAAAGGAGTTGGAGC+TGG | 0.544404 | 4.4:-18466472 | MS.gene35225:CDS |
| CTCTGTCCAAGTCCCTCTCT+AGG | 0.544981 | 4.4:+18466791 | None:intergenic |
| CGTTTATCCAAGCGCAGGAA+GGG | 0.547030 | 4.4:-18467003 | MS.gene35225:CDS |
| ACCATTATAAGGCGGTGCAT+GGG | 0.548023 | 4.4:+18467821 | None:intergenic |
| GATGATCACAATTTCCATAG+TGG | 0.554285 | 4.4:-18467381 | MS.gene35225:CDS |
| TGGCAGTAAAATAGCTACAC+AGG | 0.556312 | 4.4:-18467706 | MS.gene35225:CDS |
| AGCAAGAAAGTAGACACAAT+CGG | 0.559051 | 4.4:+18469196 | None:intergenic |
| GATCGAATGAGGACCGAAGT+GGG | 0.559665 | 4.4:-18466654 | MS.gene35225:CDS |
| TCCAGGATAGATTAAGAGGA+AGG | 0.562641 | 4.4:-18466711 | MS.gene35225:CDS |
| CGGGCATTAGGCCCATTGGT+TGG | 0.564557 | 4.4:+18467435 | None:intergenic |
| CTCTGTCTAAGTCCCTCTCT+AGG | 0.564616 | 4.4:+18466830 | None:intergenic |
| TCCTGGATCCTTCCCTCATG+AGG | 0.568928 | 4.4:+18466727 | None:intergenic |
| GAACCAGCAGTCACCTAGAG+AGG | 0.569215 | 4.4:-18466804 | MS.gene35225:CDS |
| TGTCCCCACGCCACAGATTG+CGG | 0.569632 | 4.4:-18467856 | MS.gene35225:CDS |
| TGACTGTCACCACCATTTGG+TGG | 0.569677 | 4.4:+18466853 | None:intergenic |
| CGTATTCATTCAAAGAGTCT+GGG | 0.569875 | 4.4:+18467226 | None:intergenic |
| GACAGATGTGCCTTCCTGCA+TGG | 0.570126 | 4.4:-18467744 | MS.gene35225:CDS |
| TTGAAAGAAAATGCAAGGCA+CGG | 0.577753 | 4.4:+18467788 | None:intergenic |
| CTTCAGCAGTCGATCGAATG+AGG | 0.577765 | 4.4:-18466665 | MS.gene35225:CDS |
| TGTTGCCGCAATCTGTGGCG+TGG | 0.581148 | 4.4:+18467851 | None:intergenic |
| GCAGATGTTGCCGCAATCTG+TGG | 0.582954 | 4.4:+18467846 | None:intergenic |
| TCGTTTATCCAAGCGCAGGA+AGG | 0.583309 | 4.4:-18467004 | MS.gene35225:CDS |
| GATCAGCCCAAATAGAAAGA+AGG | 0.583430 | 4.4:-18467080 | MS.gene35225:CDS |
| GATGAATTTGGTAAAACAAG+AGG | 0.583764 | 4.4:-18467264 | MS.gene35225:CDS |
| TCACAATTTCCATAGTGGTA+AGG | 0.586818 | 4.4:-18467376 | MS.gene35225:CDS |
| TTGTGGCTGTTGGGCAACCA+TGG | 0.587839 | 4.4:+18469280 | None:intergenic |
| TCGTAGTCCTGACAGTGTTG+AGG | 0.587874 | 4.4:-18467043 | MS.gene35225:CDS |
| GTTGATGCACACGATTAGAC+CGG | 0.589529 | 4.4:+18467415 | None:intergenic |
| TTCAATCGCCTCATGAGGGA+AGG | 0.590666 | 4.4:-18466735 | MS.gene35225:CDS |
| GATCATATGAGTCATAACCT+TGG | 0.590754 | 4.4:+18467139 | None:intergenic |
| CAGTCACCTAGAGAGGGACT+TGG | 0.591478 | 4.4:-18466797 | MS.gene35225:CDS |
| AAGGCTTCAATCGCCTCATG+AGG | 0.592807 | 4.4:-18466740 | MS.gene35225:CDS |
| ATCTGTCGTCGCTCATGATG+AGG | 0.592954 | 4.4:-18466968 | MS.gene35225:CDS |
| ACCACTTAGTGAAATTCTGA+AGG | 0.593072 | 4.4:-18466494 | MS.gene35225:CDS |
| AACCAATACCAACAATCTCT+AGG | 0.593370 | 4.4:+18468111 | None:intergenic |
| CGATCGAATGAGGACCGAAG+TGG | 0.593485 | 4.4:-18466655 | MS.gene35225:CDS |
| GACATCGTTTATCCAAGCGC+AGG | 0.594290 | 4.4:-18467008 | MS.gene35225:CDS |
| GTCTTGCTGAACTTAAGTAT+GGG | 0.596178 | 4.4:-18466615 | MS.gene35225:CDS |
| GATCAGGAGTATGAAGGTGA+AGG | 0.597456 | 4.4:-18466265 | MS.gene35225:CDS |
| GCCGAAGATCAGGAGTATGA+AGG | 0.599647 | 4.4:-18466271 | MS.gene35225:CDS |
| CATGCAAGAGCCATATGGCT+GGG | 0.599944 | 4.4:-18467115 | MS.gene35225:CDS |
| CACGGTCAATCATCTGAGGA+AGG | 0.602447 | 4.4:-18466313 | MS.gene35225:CDS |
| TAAAGAAACTCACCGGATGA+CGG | 0.603837 | 4.4:+18468055 | None:intergenic |
| CTAGAGAGGGACTTGGACAG+AGG | 0.604960 | 4.4:-18466790 | MS.gene35225:CDS |
| CGGGTTGTTAGGAACACCAC+CGG | 0.605352 | 4.4:-18467904 | MS.gene35225:CDS |
| TGAATATGAGCAAGGTGATG+AGG | 0.606447 | 4.4:-18466236 | MS.gene35225:CDS |
| GTTCCTAACAACCCGTCAAG+AGG | 0.607813 | 4.4:+18467912 | None:intergenic |
| TATGGCTGGGAACCTAGAAA+GGG | 0.609578 | 4.4:-18467102 | MS.gene35225:CDS |
| ATCATGTTTGCTACTGTGGG+AGG | 0.610033 | 4.4:+18466441 | None:intergenic |
| GATAGATTTCGTGTGCCCCA+AGG | 0.610131 | 4.4:-18467156 | MS.gene35225:CDS |
| ACAAGAGGTCAAGATGAAAG+AGG | 0.612476 | 4.4:-18467249 | MS.gene35225:CDS |
| ATATATGGAAGATGAAGATG+GGG | 0.612975 | 4.4:-18466170 | MS.gene35225:CDS |
| TTGCTGAACTTAAGTATGGG+AGG | 0.621411 | 4.4:-18466612 | MS.gene35225:CDS |
| GACAATACTGATGCAACTCA+CGG | 0.622935 | 4.4:-18466331 | MS.gene35225:CDS |
| GTGGTGACAGTCACCTAGAG+AGG | 0.623462 | 4.4:-18466843 | MS.gene35225:CDS |
| ACAGAGGAAGAATCAGTGGC+CGG | 0.626828 | 4.4:-18466774 | MS.gene35225:CDS |
| TTGTGATCATCTGGCAAACG+AGG | 0.626895 | 4.4:+18467393 | None:intergenic |
| TTGGCGCAGAGAACCCACTT+CGG | 0.629325 | 4.4:+18466641 | None:intergenic |
| GGCAGTAAAATAGCTACACA+GGG | 0.630874 | 4.4:-18467705 | MS.gene35225:CDS |
| AGGGTTTGGTCCATGCAGGA+AGG | 0.631683 | 4.4:+18467734 | None:intergenic |
| AACCAGCAGTCACCTAGAGA+GGG | 0.636906 | 4.4:-18466803 | MS.gene35225:CDS |
| GAAGGTTGCCAGATGACGAG+AGG | 0.639411 | 4.4:-18466693 | MS.gene35225:CDS |
| CTAGAGAGGGACTTAGACAG+AGG | 0.639929 | 4.4:-18466829 | MS.gene35225:CDS |
| GGATGACGGAATGAACACTT+GGG | 0.640470 | 4.4:+18468069 | None:intergenic |
| AGGCTTCAATCGCCTCATGA+GGG | 0.642774 | 4.4:-18466739 | MS.gene35225:CDS |
| ATGTACCGCCACCACCTGCA+GGG | 0.643731 | 4.4:-18467503 | MS.gene35225:CDS |
| AAATTCTGATTACTATCATG+GGG | 0.645440 | 4.4:-18467289 | MS.gene35225:CDS |
| TTGCCGCAATCTGTGGCGTG+GGG | 0.646254 | 4.4:+18467853 | None:intergenic |
| GTGGCCGGTTGTCATCTGGA+AGG | 0.646666 | 4.4:-18466759 | MS.gene35225:CDS |
| CATGGACCAAACCCTACCAA+TGG | 0.648418 | 4.4:-18467726 | MS.gene35225:CDS |
| ATAAATCTTCCACCAAATGG+TGG | 0.648459 | 4.4:-18466862 | MS.gene35225:CDS |
| TTGGACAGAGGAAGAATCAG+TGG | 0.649407 | 4.4:-18466778 | MS.gene35225:CDS |
| GGAGACTATGAATATGAGCA+AGG | 0.650461 | 4.4:-18466244 | MS.gene35225:CDS |
| TTGATGCACACGATTAGACC+GGG | 0.654044 | 4.4:+18467416 | None:intergenic |
| TCTGTCAATAATCGTTTCCG+AGG | 0.654101 | 4.4:-18466889 | MS.gene35225:CDS |
| TGCGCTTGGATAAACGATGT+CGG | 0.656360 | 4.4:+18467010 | None:intergenic |
| AACTCACGGTCAATCATCTG+AGG | 0.660605 | 4.4:-18466317 | MS.gene35225:CDS |
| TCAATGACAATGACCAACCA+AGG | 0.673022 | 4.4:-18467681 | MS.gene35225:CDS |
| TGAGTCTGAATCTGAAGTTG+TGG | 0.677604 | 4.4:+18469263 | None:intergenic |
| TGGTGACAGTCACCTAGAGA+GGG | 0.684816 | 4.4:-18466842 | MS.gene35225:CDS |
| TCATTATCTAACCCTGCAGG+TGG | 0.685323 | 4.4:+18467492 | None:intergenic |
| TGTTTACTACCATTATAAGG+CGG | 0.686484 | 4.4:+18467813 | None:intergenic |
| TCATATGAGTCATAACCTTG+GGG | 0.704228 | 4.4:+18467141 | None:intergenic |
| CTCTAGCATACTCACTATGG+CGG | 0.707134 | 4.4:+18468139 | None:intergenic |
| GCTACAAGAACATCAAACCC+AGG | 0.714968 | 4.4:+18467324 | None:intergenic |
| GCAGTAAAATAGCTACACAG+GGG | 0.802739 | 4.4:-18467704 | MS.gene35225:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTAATAATAATA+GGG | + | chr4.4:18466890-18466909 | None:intergenic | 0.0% |
| !! | ATAATTGATAAAGAAAAAAA+AGG | + | chr4.4:18466294-18466313 | None:intergenic | 10.0% |
| !! | TAATTGATAAAGAAAAAAAA+GGG | + | chr4.4:18466293-18466312 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTTGATTAATG+GGG | - | chr4.4:18466384-18466403 | MS.gene35225:CDS | 10.0% |
| !!! | TTTATCAATTATATCTTTTA+GGG | - | chr4.4:18466302-18466321 | MS.gene35225:CDS | 10.0% |
| !! | CATAACTCAATTAAAATAAA+AGG | + | chr4.4:18467399-18467418 | None:intergenic | 15.0% |
| !!! | CTTTATCAATTATATCTTTT+AGG | - | chr4.4:18466301-18466320 | MS.gene35225:CDS | 15.0% |
| !! | AATACTCTAAACTTAATGAA+AGG | + | chr4.4:18466799-18466818 | None:intergenic | 20.0% |
| !! | ACAGAAAAATATGTTTAAGT+TGG | - | chr4.4:18467878-18467897 | MS.gene35225:CDS | 20.0% |
| !! | CATCTGTTATTAAGAATATA+AGG | - | chr4.4:18467149-18467168 | MS.gene35225:CDS | 20.0% |
| !!! | AACTTAAACATATTTTTCTG+TGG | + | chr4.4:18467879-18467898 | None:intergenic | 20.0% |
| !!! | ATCTACAATTCAACAATTTT+AGG | + | chr4.4:18466447-18466466 | None:intergenic | 20.0% |
| !!! | TCTACAATTCAACAATTTTA+GGG | + | chr4.4:18466446-18466465 | None:intergenic | 20.0% |
| ! | AAATCAAGAGCAAGAATATA+TGG | - | chr4.4:18469225-18469244 | MS.gene35225:CDS | 25.0% |
| ! | AAATTCTGATTACTATCATG+GGG | - | chr4.4:18468121-18468140 | MS.gene35225:CDS | 25.0% |
| ! | AACAAAAAAATCTTCATGGA+TGG | + | chr4.4:18466473-18466492 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr4.4:18466863-18466882 | MS.gene35225:CDS | 25.0% |
| ! | AATAATGACCAACAATCATT+TGG | - | chr4.4:18468830-18468849 | MS.gene35225:intron | 25.0% |
| ! | AATATATGGAAGATGAAGAT+GGG | - | chr4.4:18469239-18469258 | MS.gene35225:CDS | 25.0% |
| ! | ACAAAAAAATCTTCATGGAT+GGG | + | chr4.4:18466472-18466491 | None:intergenic | 25.0% |
| ! | AGAAATTCTGATTACTATCA+TGG | - | chr4.4:18468119-18468138 | MS.gene35225:CDS | 25.0% |
| ! | AGTATTTGAGTCTTGATTAT+AGG | - | chr4.4:18466922-18466941 | MS.gene35225:CDS | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | - | chr4.4:18466864-18466883 | MS.gene35225:CDS | 25.0% |
| ! | GAAATTCTGATTACTATCAT+GGG | - | chr4.4:18468120-18468139 | MS.gene35225:CDS | 25.0% |
| ! | GTCTAACAAAAAAATCTTCA+TGG | + | chr4.4:18466477-18466496 | None:intergenic | 25.0% |
| ! | TTCTCTTCTTTATTGAAACA+GGG | - | chr4.4:18467233-18467252 | MS.gene35225:CDS | 25.0% |
| !! | CCTTTTGTATTTAACATAGT+GGG | - | chr4.4:18466601-18466620 | MS.gene35225:CDS | 25.0% |
| !! | TCCTTTTGTATTTAACATAG+TGG | - | chr4.4:18466600-18466619 | MS.gene35225:CDS | 25.0% |
| !!! | AAAAAGGGCTTTTTAGAAAA+AGG | + | chr4.4:18466278-18466297 | None:intergenic | 25.0% |
| !!! | GTTAGACTGTGAATTTTTTA+TGG | - | chr4.4:18466490-18466509 | MS.gene35225:CDS | 25.0% |
| !!! | TAATTTTGATTAATGGGGTT+TGG | - | chr4.4:18466389-18466408 | MS.gene35225:CDS | 25.0% |
| !!! | TGATCATCTTGTTATTTGAT+TGG | - | chr4.4:18466540-18466559 | MS.gene35225:CDS | 25.0% |
| !!! | TTTCAGATTCGAATTAGTTT+TGG | - | chr4.4:18466325-18466344 | MS.gene35225:CDS | 25.0% |
| AAAGGAATGATCAAAAAGAG+AGG | + | chr4.4:18466586-18466605 | None:intergenic | 30.0% | |
| AATGAAGGAATTACCGAAAA+CGG | - | chr4.4:18469001-18469020 | MS.gene35225:intron | 30.0% | |
| AGAATAAATCTTCCACCAAA+TGG | - | chr4.4:18468545-18468564 | MS.gene35225:intron | 30.0% | |
| AGTCAAAAGATAGGACAAAA+TGG | + | chr4.4:18467434-18467453 | None:intergenic | 30.0% | |
| ATACAGACAAGTCAAAAGAT+AGG | + | chr4.4:18467443-18467462 | None:intergenic | 30.0% | |
| ATATATGGAAGATGAAGATG+GGG | - | chr4.4:18469240-18469259 | MS.gene35225:CDS | 30.0% | |
| ATCATATGAGTCATAACCTT+GGG | + | chr4.4:18468273-18468292 | None:intergenic | 30.0% | |
| ATGAGTCCTTCTTTCTATTT+GGG | + | chr4.4:18468339-18468358 | None:intergenic | 30.0% | |
| CATGATGACAATAAGAATGA+AGG | - | chr4.4:18468986-18469005 | MS.gene35225:intron | 30.0% | |
| CCAAAAGGTTTCTTAAAACT+TGG | + | chr4.4:18467765-18467784 | None:intergenic | 30.0% | |
| CCCACTATGTTAAATACAAA+AGG | + | chr4.4:18466604-18466623 | None:intergenic | 30.0% | |
| CTTTGAATGAATACGATGTA+GGG | - | chr4.4:18468192-18468211 | MS.gene35225:intron | 30.0% | |
| GAATATATGGAAGATGAAGA+TGG | - | chr4.4:18469238-18469257 | MS.gene35225:CDS | 30.0% | |
| GATGAATTTGGTAAAACAAG+AGG | - | chr4.4:18468146-18468165 | MS.gene35225:CDS | 30.0% | |
| GCTTGTTTACTACCATTATA+AGG | + | chr4.4:18467603-18467622 | None:intergenic | 30.0% | |
| GTACATCATCTTCATATTGT+TGG | + | chr4.4:18468880-18468899 | None:intergenic | 30.0% | |
| GTTCTCTTCTTTATTGAAAC+AGG | - | chr4.4:18467232-18467251 | MS.gene35225:CDS | 30.0% | |
| TAGTTAACAAAACAACTTCC+AGG | + | chr4.4:18466993-18467012 | None:intergenic | 30.0% | |
| TCTTTGAATGAATACGATGT+AGG | - | chr4.4:18468191-18468210 | MS.gene35225:intron | 30.0% | |
| TGTTTACTACCATTATAAGG+CGG | + | chr4.4:18467600-18467619 | None:intergenic | 30.0% | |
| TTGAAAAACATGCACAAGAA+AGG | - | chr4.4:18467790-18467809 | MS.gene35225:CDS | 30.0% | |
| ! | AGAATTTCACTAAGTGGTTT+TGG | + | chr4.4:18468914-18468933 | None:intergenic | 30.0% |
| ! | CCTTGCATTTTCTTTCAAAA+GGG | - | chr4.4:18467627-18467646 | MS.gene35225:CDS | 30.0% |
| ! | CTTGCATTTTCTTTCAAAAG+GGG | - | chr4.4:18467628-18467647 | MS.gene35225:CDS | 30.0% |
| ! | TATGAGTATGAACAAGTTGA+GGG | - | chr4.4:18469199-18469218 | MS.gene35225:CDS | 30.0% |
| ! | TTAAGTTCAGCAAGACTTTT+TGG | + | chr4.4:18468791-18468810 | None:intergenic | 30.0% |
| !! | TTTTTATGGATTGCGTTTCT+TGG | - | chr4.4:18466504-18466523 | MS.gene35225:CDS | 30.0% |
| !!! | ACATGCTGCTTTTATTTTTG+TGG | - | chr4.4:18467078-18467097 | MS.gene35225:CDS | 30.0% |
| !!! | AGTTTTAAGAAACCTTTTGG+CGG | - | chr4.4:18467765-18467784 | MS.gene35225:CDS | 30.0% |
| !!! | CCAAGTTTTAAGAAACCTTT+TGG | - | chr4.4:18467762-18467781 | MS.gene35225:CDS | 30.0% |
| !!! | TATCTTTTGACTTGTCTGTA+TGG | - | chr4.4:18467442-18467461 | MS.gene35225:CDS | 30.0% |
| !!! | TGTGTTTTTTTGAGTAATCC+TGG | - | chr4.4:18466972-18466991 | MS.gene35225:CDS | 30.0% |
| AACCAATACCAACAATCTCT+AGG | + | chr4.4:18467302-18467321 | None:intergenic | 35.0% | |
| AAGAACAACACCAATCTTCT+TGG | + | chr4.4:18469275-18469294 | None:intergenic | 35.0% | |
| AATAATAATAGGGCCCTGTT+TGG | + | chr4.4:18466880-18466899 | None:intergenic | 35.0% | |
| ACCAACAATCATTTGGAAAG+AGG | - | chr4.4:18468837-18468856 | MS.gene35225:intron | 35.0% | |
| ACCACTTAGTGAAATTCTGA+AGG | - | chr4.4:18468916-18468935 | MS.gene35225:intron | 35.0% | |
| ACTGCTAACAAACACTATAC+AGG | + | chr4.4:18466952-18466971 | None:intergenic | 35.0% | |
| AGCAAGAAAGTAGACACAAT+CGG | + | chr4.4:18466217-18466236 | None:intergenic | 35.0% | |
| AGTCTTGCTGAACTTAAGTA+TGG | - | chr4.4:18468794-18468813 | MS.gene35225:intron | 35.0% | |
| ATAAATCTTCCACCAAATGG+TGG | - | chr4.4:18468548-18468567 | MS.gene35225:intron | 35.0% | |
| ATCCTAGAGATTGTTGGTAT+TGG | - | chr4.4:18467297-18467316 | MS.gene35225:CDS | 35.0% | |
| ATCTCTCATTTGAAGGTAAC+TGG | + | chr4.4:18468502-18468521 | None:intergenic | 35.0% | |
| CATGTGTATAGTGTAGTGAA+TGG | - | chr4.4:18466773-18466792 | MS.gene35225:CDS | 35.0% | |
| CGTATTCATTCAAAGAGTCT+GGG | + | chr4.4:18468187-18468206 | None:intergenic | 35.0% | |
| CTATGGAAATTGTGATCATC+TGG | + | chr4.4:18468029-18468048 | None:intergenic | 35.0% | |
| GAACCCTAATTGTGATTGTT+AGG | - | chr4.4:18466653-18466672 | MS.gene35225:CDS | 35.0% | |
| GAAGATGATGTACCATTTGA+AGG | - | chr4.4:18468887-18468906 | MS.gene35225:intron | 35.0% | |
| GATCATATGAGTCATAACCT+TGG | + | chr4.4:18468274-18468293 | None:intergenic | 35.0% | |
| GATGAGTCCTTCTTTCTATT+TGG | + | chr4.4:18468340-18468359 | None:intergenic | 35.0% | |
| GATGATCACAATTTCCATAG+TGG | - | chr4.4:18468029-18468048 | MS.gene35225:intron | 35.0% | |
| GGTCCTAACAATCACAATTA+GGG | + | chr4.4:18466659-18466678 | None:intergenic | 35.0% | |
| GTATGAGTATGAACAAGTTG+AGG | - | chr4.4:18469198-18469217 | MS.gene35225:CDS | 35.0% | |
| GTCTTGCTGAACTTAAGTAT+GGG | - | chr4.4:18468795-18468814 | MS.gene35225:intron | 35.0% | |
| GTGAAGGAAATTAGGATGAA+CGG | - | chr4.4:18466623-18466642 | MS.gene35225:CDS | 35.0% | |
| TATCATGGGGAAGATGAATT+TGG | - | chr4.4:18468134-18468153 | MS.gene35225:CDS | 35.0% | |
| TCACAATTTCCATAGTGGTA+AGG | - | chr4.4:18468034-18468053 | MS.gene35225:intron | 35.0% | |
| TCATATGAGTCATAACCTTG+GGG | + | chr4.4:18468272-18468291 | None:intergenic | 35.0% | |
| TCCTCTTTCCAAATGATTGT+TGG | + | chr4.4:18468841-18468860 | None:intergenic | 35.0% | |
| TCCTTCAGAATTTCACTAAG+TGG | + | chr4.4:18468920-18468939 | None:intergenic | 35.0% | |
| TCGTATTCATTCAAAGAGTC+TGG | + | chr4.4:18468188-18468207 | None:intergenic | 35.0% | |
| TGAAGGAAATTAGGATGAAC+GGG | - | chr4.4:18466624-18466643 | MS.gene35225:CDS | 35.0% | |
| TGGTCCTAACAATCACAATT+AGG | + | chr4.4:18466660-18466679 | None:intergenic | 35.0% | |
| TTGAAAGAAAATGCAAGGCA+CGG | + | chr4.4:18467625-18467644 | None:intergenic | 35.0% | |
| TTGACAGATCTCTCATTTGA+AGG | + | chr4.4:18468509-18468528 | None:intergenic | 35.0% | |
| ! | AAGAACCTTTTTGCATGTCA+AGG | + | chr4.4:18466244-18466263 | None:intergenic | 35.0% |
| ! | AGAACCTTTTTGCATGTCAA+GGG | + | chr4.4:18466243-18466262 | None:intergenic | 35.0% |
| ! | CAAAAGGGGTTTTGCTTAAA+AGG | - | chr4.4:18467642-18467661 | MS.gene35225:CDS | 35.0% |
| ! | CTATTTTACTGCCATTGGTA+GGG | + | chr4.4:18467698-18467717 | None:intergenic | 35.0% |
| ! | GAAATTCTGAAGGAGAAGAA+AGG | - | chr4.4:18468926-18468945 | MS.gene35225:intron | 35.0% |
| ! | GCCTTGCATTTTCTTTCAAA+AGG | - | chr4.4:18467626-18467645 | MS.gene35225:CDS | 35.0% |
| !! | CCCTTTTGAAAGAAAATGCA+AGG | + | chr4.4:18467630-18467649 | None:intergenic | 35.0% |
| !! | GATTGTTGGTATTGGTTGAA+TGG | - | chr4.4:18467305-18467324 | MS.gene35225:CDS | 35.0% |
| !! | GTATTTAACATAGTGGGTGA+AGG | - | chr4.4:18466607-18466626 | MS.gene35225:CDS | 35.0% |
| !! | TGTAGCTATTTTACTGCCAT+TGG | + | chr4.4:18467703-18467722 | None:intergenic | 35.0% |
| !!! | AGCAAAGTCATCGATTTTCT+CGG | - | chr4.4:18468465-18468484 | MS.gene35225:intron | 35.0% |
| AACACCTGCAACATTTGCTT+GGG | + | chr4.4:18467823-18467842 | None:intergenic | 40.0% | |
| ACAAGAGGTCAAGATGAAAG+AGG | - | chr4.4:18468161-18468180 | MS.gene35225:intron | 40.0% | |
| ACCTTCATACTCCTGATCTT+CGG | + | chr4.4:18469143-18469162 | None:intergenic | 40.0% | |
| ACCTTCCTCTTAATCTATCC+TGG | + | chr4.4:18468703-18468722 | None:intergenic | 40.0% | |
| AGGATCCAGGATAGATTAAG+AGG | - | chr4.4:18468695-18468714 | MS.gene35225:intron | 40.0% | |
| CTCAAGATGAAGCCTTGAAA+AGG | - | chr4.4:18466187-18466206 | MS.gene35225:CDS | 40.0% | |
| GAAGGAAATTAGGATGAACG+GGG | - | chr4.4:18466625-18466644 | MS.gene35225:CDS | 40.0% | |
| GACAATACTGATGCAACTCA+CGG | - | chr4.4:18469079-18469098 | MS.gene35225:intron | 40.0% | |
| GAGTCAATCCTAGAGATTGT+TGG | - | chr4.4:18467291-18467310 | MS.gene35225:CDS | 40.0% | |
| GATCAGCCCAAATAGAAAGA+AGG | - | chr4.4:18468330-18468349 | MS.gene35225:intron | 40.0% | |
| GATGACTTTGCCAAGAAGAT+TGG | - | chr4.4:18469262-18469281 | MS.gene35225:CDS | 40.0% | |
| GCAGTAAAATAGCTACACAG+GGG | - | chr4.4:18467706-18467725 | MS.gene35225:CDS | 40.0% | |
| GCTGATGTCAATTGAGCATT+TGG | - | chr4.4:18466739-18466758 | MS.gene35225:CDS | 40.0% | |
| GGAGACTATGAATATGAGCA+AGG | - | chr4.4:18469166-18469185 | MS.gene35225:intron | 40.0% | |
| GGCAGTAAAATAGCTACACA+GGG | - | chr4.4:18467705-18467724 | MS.gene35225:CDS | 40.0% | |
| GTGGAAGATTTATTCTGCCT+CGG | + | chr4.4:18468541-18468560 | None:intergenic | 40.0% | |
| TAAAGAAACTCACCGGATGA+CGG | + | chr4.4:18467358-18467377 | None:intergenic | 40.0% | |
| TCAATGACAATGACCAACCA+AGG | - | chr4.4:18467729-18467748 | MS.gene35225:CDS | 40.0% | |
| TCCAGGATAGATTAAGAGGA+AGG | - | chr4.4:18468699-18468718 | MS.gene35225:intron | 40.0% | |
| TCTGTCAATAATCGTTTCCG+AGG | - | chr4.4:18468521-18468540 | MS.gene35225:intron | 40.0% | |
| TGAATATGAGCAAGGTGATG+AGG | - | chr4.4:18469174-18469193 | MS.gene35225:intron | 40.0% | |
| TGACTCTAGCATACTCACTA+TGG | + | chr4.4:18467277-18467296 | None:intergenic | 40.0% | |
| TGGAAAGAGGAAAAGCTTCA+GGG | - | chr4.4:18468850-18468869 | MS.gene35225:intron | 40.0% | |
| TGGCAGTAAAATAGCTACAC+AGG | - | chr4.4:18467704-18467723 | MS.gene35225:CDS | 40.0% | |
| TTCTCCCTTGACATGCAAAA+AGG | - | chr4.4:18466236-18466255 | MS.gene35225:CDS | 40.0% | |
| TTGCTGAACTTAAGTATGGG+AGG | - | chr4.4:18468798-18468817 | MS.gene35225:intron | 40.0% | |
| TTGGAAAGAGGAAAAGCTTC+AGG | - | chr4.4:18468849-18468868 | MS.gene35225:intron | 40.0% | |
| ! | AATCTGAAGTTGTGGCTGTT+GGG | + | chr4.4:18466142-18466161 | None:intergenic | 40.0% |
| ! | CTCTGACAATGTTCCGTTTT+CGG | + | chr4.4:18469017-18469036 | None:intergenic | 40.0% |
| ! | GACATCAGCTTACACTTTTG+TGG | + | chr4.4:18466728-18466747 | None:intergenic | 40.0% |
| ! | GTCATCATGTTTGCTACTGT+GGG | + | chr4.4:18468975-18468994 | None:intergenic | 40.0% |
| ! | GTGGAGCAGTCTCAAATTTT+TGG | + | chr4.4:18467860-18467879 | None:intergenic | 40.0% |
| ! | TGAGTCTGAATCTGAAGTTG+TGG | + | chr4.4:18466150-18466169 | None:intergenic | 40.0% |
| ! | TGTCATCATGTTTGCTACTG+TGG | + | chr4.4:18468976-18468995 | None:intergenic | 40.0% |
| ! | TTTTACATGCAGCCTCTTGA+CGG | - | chr4.4:18467486-18467505 | MS.gene35225:CDS | 40.0% |
| !! | ACAATCGGTGTTCCTTTTCA+AGG | + | chr4.4:18466202-18466221 | None:intergenic | 40.0% |
| !! | CATAGTGGGTGAAGGAAATT+AGG | - | chr4.4:18466615-18466634 | MS.gene35225:CDS | 40.0% |
| !! | CTTTTCAAGGCTTCATCTTG+AGG | + | chr4.4:18466189-18466208 | None:intergenic | 40.0% |
| !! | GCAGTCTCAAATTTTTGGAC+AGG | + | chr4.4:18467855-18467874 | None:intergenic | 40.0% |
| !! | GCTATTTTACTGCCATTGGT+AGG | + | chr4.4:18467699-18467718 | None:intergenic | 40.0% |
| !! | TGTTTTTCAATGCCGCCAAA+AGG | + | chr4.4:18467780-18467799 | None:intergenic | 40.0% |
| !!! | AAGTCATCGATTTTCTCGGA+AGG | - | chr4.4:18468469-18468488 | MS.gene35225:intron | 40.0% |
| !!! | AGTGGTTTTGGACCTTCAAA+TGG | + | chr4.4:18468902-18468921 | None:intergenic | 40.0% |
| AAAGGACAGAAAACTCGTGC+TGG | + | chr4.4:18467381-18467400 | None:intergenic | 45.0% | |
| AACTCACGGTCAATCATCTG+AGG | - | chr4.4:18469093-18469112 | MS.gene35225:intron | 45.0% | |
| AACTTGGATTCTCAGCTCCT+TGG | + | chr4.4:18467749-18467768 | None:intergenic | 45.0% | |
| AAGGCTTCATCTTGAGGAGA+AGG | + | chr4.4:18466183-18466202 | None:intergenic | 45.0% | |
| AAGTTTCTCCTCTCGTCATC+TGG | + | chr4.4:18468728-18468747 | None:intergenic | 45.0% | |
| ACCATTATAAGGCGGTGCAT+GGG | + | chr4.4:18467592-18467611 | None:intergenic | 45.0% | |
| ACCTGCAGGGTTAGATAATG+AGG | - | chr4.4:18467920-18467939 | MS.gene35225:intron | 45.0% | |
| ACTTCCCAAGCAAATGTTGC+AGG | - | chr4.4:18467816-18467835 | MS.gene35225:CDS | 45.0% | |
| ATATGGCTGGGAACCTAGAA+AGG | - | chr4.4:18468307-18468326 | MS.gene35225:intron | 45.0% | |
| ATTTGGGCTGATCCCTTTCT+AGG | + | chr4.4:18468323-18468342 | None:intergenic | 45.0% | |
| CAACACCTGCAACATTTGCT+TGG | + | chr4.4:18467824-18467843 | None:intergenic | 45.0% | |
| CAAGTGTTCATTCCGTCATC+CGG | - | chr4.4:18467343-18467362 | MS.gene35225:CDS | 45.0% | |
| CGTCATTGTCCTTACCACTA+TGG | + | chr4.4:18468046-18468065 | None:intergenic | 45.0% | |
| CTCTAGCATACTCACTATGG+CGG | + | chr4.4:18467274-18467293 | None:intergenic | 45.0% | |
| CTGAAGGAGAAGAAAGGAGT+TGG | - | chr4.4:18468932-18468951 | MS.gene35225:intron | 45.0% | |
| GATCACATGCAAGAGCCATA+TGG | - | chr4.4:18468290-18468309 | MS.gene35225:intron | 45.0% | |
| GCTACAAGAACATCAAACCC+AGG | + | chr4.4:18468089-18468108 | None:intergenic | 45.0% | |
| GGAAGAAGAGTCCAAGATTC+AGG | - | chr4.4:18469042-18469061 | MS.gene35225:intron | 45.0% | |
| GTTGATGCACACGATTAGAC+CGG | + | chr4.4:18467998-18468017 | None:intergenic | 45.0% | |
| TACCATTATAAGGCGGTGCA+TGG | + | chr4.4:18467593-18467612 | None:intergenic | 45.0% | |
| TATGGCTGGGAACCTAGAAA+GGG | - | chr4.4:18468308-18468327 | MS.gene35225:intron | 45.0% | |
| TCATTATCTAACCCTGCAGG+TGG | + | chr4.4:18467921-18467940 | None:intergenic | 45.0% | |
| TGCGCTTGGATAAACGATGT+CGG | + | chr4.4:18468403-18468422 | None:intergenic | 45.0% | |
| TTACTGCCATTGGTAGGGTT+TGG | + | chr4.4:18467693-18467712 | None:intergenic | 45.0% | |
| TTGATGCACACGATTAGACC+GGG | + | chr4.4:18467997-18468016 | None:intergenic | 45.0% | |
| TTGGACAGAGGAAGAATCAG+TGG | - | chr4.4:18468632-18468651 | MS.gene35225:intron | 45.0% | |
| TTGTGATCATCTGGCAAACG+AGG | + | chr4.4:18468020-18468039 | None:intergenic | 45.0% | |
| TTTACATGCAGCCTCTTGAC+GGG | - | chr4.4:18467487-18467506 | MS.gene35225:CDS | 45.0% | |
| TTTCTAGGTTCCCAGCCATA+TGG | + | chr4.4:18468308-18468327 | None:intergenic | 45.0% | |
| ! | ATCATGTTTGCTACTGTGGG+AGG | + | chr4.4:18468972-18468991 | None:intergenic | 45.0% |
| ! | GAATCTGAAGTTGTGGCTGT+TGG | + | chr4.4:18466143-18466162 | None:intergenic | 45.0% |
| ! | GATCAGGAGTATGAAGGTGA+AGG | - | chr4.4:18469145-18469164 | MS.gene35225:intron | 45.0% |
| ! | GTGCTGGTAAAGAAACTCAC+CGG | + | chr4.4:18467365-18467384 | None:intergenic | 45.0% |
| ! | TCATCTTGAGGAGAAGGTGT+TGG | + | chr4.4:18466177-18466196 | None:intergenic | 45.0% |
| !! | GGATGACGGAATGAACACTT+GGG | + | chr4.4:18467344-18467363 | None:intergenic | 45.0% |
| !! | TAATAAAATAACAAAAATTA+TGG | + | chr4.4:18466680-18466699 | None:intergenic | 5.0% |
| !!! | AAAAATTTAATTTTGATTAA+TGG | - | chr4.4:18466382-18466401 | MS.gene35225:CDS | 5.0% |
| !!! | AAAATTTAATTTTGATTAAT+GGG | - | chr4.4:18466383-18466402 | MS.gene35225:CDS | 5.0% |
| !!! | CTTTTTATTTTAATAATAAT+AGG | + | chr4.4:18466891-18466910 | None:intergenic | 5.0% |
| AACCAGCAGTCACCTAGAGA+GGG | - | chr4.4:18468607-18468626 | MS.gene35225:intron | 50.0% | |
| AAGGCTTCAATCGCCTCATG+AGG | - | chr4.4:18468670-18468689 | MS.gene35225:intron | 50.0% | |
| ACACGATTAGACCGGGCATT+AGG | + | chr4.4:18467990-18468009 | None:intergenic | 50.0% | |
| ACAGAGGAAGAATCAGTGGC+CGG | - | chr4.4:18468636-18468655 | MS.gene35225:intron | 50.0% | |
| ACATGCAAGAGCCATATGGC+TGG | - | chr4.4:18468294-18468313 | MS.gene35225:intron | 50.0% | |
| ACCCATGCACCGCCTTATAA+TGG | - | chr4.4:18467588-18467607 | MS.gene35225:CDS | 50.0% | |
| AGGCTTCAATCGCCTCATGA+GGG | - | chr4.4:18468671-18468690 | MS.gene35225:intron | 50.0% | |
| AGGTGACTGTCACCACCATT+TGG | + | chr4.4:18468563-18468582 | None:intergenic | 50.0% | |
| ATCTGTCGTCGCTCATGATG+AGG | - | chr4.4:18468442-18468461 | MS.gene35225:intron | 50.0% | |
| CACGGTCAATCATCTGAGGA+AGG | - | chr4.4:18469097-18469116 | MS.gene35225:intron | 50.0% | |
| CATGCAAGAGCCATATGGCT+GGG | - | chr4.4:18468295-18468314 | MS.gene35225:intron | 50.0% | |
| CATGGACCAAACCCTACCAA+TGG | - | chr4.4:18467684-18467703 | MS.gene35225:CDS | 50.0% | |
| CGGAACATTGTCAGAGAGCA+AGG | - | chr4.4:18469021-18469040 | MS.gene35225:intron | 50.0% | |
| CGTTTATCCAAGCGCAGGAA+GGG | - | chr4.4:18468407-18468426 | MS.gene35225:intron | 50.0% | |
| CTAGAGAGGGACTTAGACAG+AGG | - | chr4.4:18468581-18468600 | MS.gene35225:intron | 50.0% | |
| CTCTGTCTAAGTCCCTCTCT+AGG | + | chr4.4:18468583-18468602 | None:intergenic | 50.0% | |
| CTTCAGCAGTCGATCGAATG+AGG | - | chr4.4:18468745-18468764 | MS.gene35225:intron | 50.0% | |
| GAAGCCTTCCAGATGACAAC+CGG | + | chr4.4:18468658-18468677 | None:intergenic | 50.0% | |
| GACATCGTTTATCCAAGCGC+AGG | - | chr4.4:18468402-18468421 | MS.gene35225:intron | 50.0% | |
| GAGAAGAAAGGAGTTGGAGC+TGG | - | chr4.4:18468938-18468957 | MS.gene35225:intron | 50.0% | |
| GATAGATTTCGTGTGCCCCA+AGG | - | chr4.4:18468254-18468273 | MS.gene35225:intron | 50.0% | |
| GATCGAATGAGGACCGAAGT+GGG | - | chr4.4:18468756-18468775 | MS.gene35225:intron | 50.0% | |
| GCCTCATTATCTAACCCTGC+AGG | + | chr4.4:18467924-18467943 | None:intergenic | 50.0% | |
| GTTCCTAACAACCCGTCAAG+AGG | + | chr4.4:18467501-18467520 | None:intergenic | 50.0% | |
| TCCAAGATTCAGGCTGCTGA+TGG | - | chr4.4:18469052-18469071 | MS.gene35225:intron | 50.0% | |
| TCCATCAGCAGCCTGAATCT+TGG | + | chr4.4:18469056-18469075 | None:intergenic | 50.0% | |
| TCGTAGTCCTGACAGTGTTG+AGG | - | chr4.4:18468367-18468386 | MS.gene35225:intron | 50.0% | |
| TCGTTTATCCAAGCGCAGGA+AGG | - | chr4.4:18468406-18468425 | MS.gene35225:intron | 50.0% | |
| TGACTGTCACCACCATTTGG+TGG | + | chr4.4:18468560-18468579 | None:intergenic | 50.0% | |
| TGGATTCTCAGCTCCTTGGT+TGG | + | chr4.4:18467745-18467764 | None:intergenic | 50.0% | |
| TGGTGACAGTCACCTAGAGA+GGG | - | chr4.4:18468568-18468587 | MS.gene35225:intron | 50.0% | |
| TTATCTAACCCTGCAGGTGG+TGG | + | chr4.4:18467918-18467937 | None:intergenic | 50.0% | |
| TTCAATCGCCTCATGAGGGA+AGG | - | chr4.4:18468675-18468694 | MS.gene35225:intron | 50.0% | |
| TTCTCAGAGAGTCGTCTCCT+GGG | - | chr4.4:18468069-18468088 | MS.gene35225:CDS | 50.0% | |
| TTGTGGCTGTGCGAATCATG+TGG | - | chr4.4:18467095-18467114 | MS.gene35225:CDS | 50.0% | |
| TTTCTCAGAGAGTCGTCTCC+TGG | - | chr4.4:18468068-18468087 | MS.gene35225:CDS | 50.0% | |
| ! | GCCGAAGATCAGGAGTATGA+AGG | - | chr4.4:18469139-18469158 | MS.gene35225:intron | 50.0% |
| ! | TCTGAGACCTCAACACTGTC+AGG | + | chr4.4:18468377-18468396 | None:intergenic | 50.0% |
| !! | CGGATGACGGAATGAACACT+TGG | + | chr4.4:18467345-18467364 | None:intergenic | 50.0% |
| AAAGGAGTTGGAGCTGGTGC+AGG | - | chr4.4:18468944-18468963 | MS.gene35225:intron | 55.0% | |
| AGTTCTCCACCGCCAACCAA+TGG | - | chr4.4:18467963-18467982 | MS.gene35225:intron | 55.0% | |
| ATCAGTGGCCGGTTGTCATC+TGG | - | chr4.4:18468647-18468666 | MS.gene35225:intron | 55.0% | |
| CAACCAATGGGCCTAATGCC+CGG | - | chr4.4:18467976-18467995 | MS.gene35225:intron | 55.0% | |
| CAGTCACCTAGAGAGGGACT+TGG | - | chr4.4:18468574-18468593 | MS.gene35225:intron | 55.0% | |
| CGATCGAATGAGGACCGAAG+TGG | - | chr4.4:18468755-18468774 | MS.gene35225:intron | 55.0% | |
| CGATGAAGCTGCCGAAGATC+AGG | - | chr4.4:18469129-18469148 | MS.gene35225:intron | 55.0% | |
| CGGGTTGTTAGGAACACCAC+CGG | - | chr4.4:18467506-18467525 | MS.gene35225:CDS | 55.0% | |
| CTAGAGAGGGACTTGGACAG+AGG | - | chr4.4:18468620-18468639 | MS.gene35225:intron | 55.0% | |
| CTCTGTCCAAGTCCCTCTCT+AGG | + | chr4.4:18468622-18468641 | None:intergenic | 55.0% | |
| GAACCAGCAGTCACCTAGAG+AGG | - | chr4.4:18468606-18468625 | MS.gene35225:intron | 55.0% | |
| GAAGGTTGCCAGATGACGAG+AGG | - | chr4.4:18468717-18468736 | MS.gene35225:intron | 55.0% | |
| GACAGATGTGCCTTCCTGCA+TGG | - | chr4.4:18467666-18467685 | MS.gene35225:CDS | 55.0% | |
| GCAGATGTTGCCGCAATCTG+TGG | + | chr4.4:18467567-18467586 | None:intergenic | 55.0% | |
| GTGGTGACAGTCACCTAGAG+AGG | - | chr4.4:18468567-18468586 | MS.gene35225:intron | 55.0% | |
| GTTCTCCACCGCCAACCAAT+GGG | - | chr4.4:18467964-18467983 | MS.gene35225:intron | 55.0% | |
| TCCAAGCGCAGGAAGGGAAA+CGG | - | chr4.4:18468413-18468432 | MS.gene35225:intron | 55.0% | |
| TCCTGGATCCTTCCCTCATG+AGG | + | chr4.4:18468686-18468705 | None:intergenic | 55.0% | |
| TTGGCGCAGAGAACCCACTT+CGG | + | chr4.4:18468772-18468791 | None:intergenic | 55.0% | |
| ! | AGGGTTTGGTCCATGCAGGA+AGG | + | chr4.4:18467679-18467698 | None:intergenic | 55.0% |
| ! | GCATTAGGCCCATTGGTTGG+CGG | + | chr4.4:18467975-18467994 | None:intergenic | 55.0% |
| ! | TGGTAGGGTTTGGTCCATGC+AGG | + | chr4.4:18467683-18467702 | None:intergenic | 55.0% |
| !! | CAGCCTCTTGACGGGTTGTT+AGG | - | chr4.4:18467495-18467514 | MS.gene35225:CDS | 55.0% |
| AGACCGGGCATTAGGCCCAT+TGG | + | chr4.4:18467982-18468001 | None:intergenic | 60.0% | |
| ATCTGTGGCGTGGGGACAGA+TGG | + | chr4.4:18467552-18467571 | None:intergenic | 60.0% | |
| ATGTACCGCCACCACCTGCA+GGG | - | chr4.4:18467907-18467926 | MS.gene35225:CDS | 60.0% | |
| CGGGCATTAGGCCCATTGGT+TGG | + | chr4.4:18467978-18467997 | None:intergenic | 60.0% | |
| GCCTCATGAGGGAAGGATCC+AGG | - | chr4.4:18468682-18468701 | MS.gene35225:intron | 60.0% | |
| GTCCCTCTCTAGGTGACTGC+TGG | + | chr4.4:18468612-18468631 | None:intergenic | 60.0% | |
| GTGGCCGGTTGTCATCTGGA+AGG | - | chr4.4:18468651-18468670 | MS.gene35225:intron | 60.0% | |
| GTTGCCGCAATCTGTGGCGT+GGG | + | chr4.4:18467561-18467580 | None:intergenic | 60.0% | |
| TGTCCCCACGCCACAGATTG+CGG | - | chr4.4:18467554-18467573 | MS.gene35225:CDS | 60.0% | |
| TGTTGCCGCAATCTGTGGCG+TGG | + | chr4.4:18467562-18467581 | None:intergenic | 60.0% | |
| TTGCCGCAATCTGTGGCGTG+GGG | + | chr4.4:18467560-18467579 | None:intergenic | 60.0% | |
| ! | TCTAACCCTGCAGGTGGTGG+CGG | + | chr4.4:18467915-18467934 | None:intergenic | 60.0% |
| ! | TTAGGCCCATTGGTTGGCGG+TGG | + | chr4.4:18467972-18467991 | None:intergenic | 60.0% |
| CATGTACCGCCACCACCTGC+AGG | - | chr4.4:18467906-18467925 | MS.gene35225:CDS | 65.0% | |
| CCAGCAGCAGCAGCAGTTGC+CGG | + | chr4.4:18467528-18467547 | None:intergenic | 65.0% | |
| GCCGTTTCCCTTCCTGCGCT+TGG | + | chr4.4:18468417-18468436 | None:intergenic | 65.0% | |
| CCGGCAACTGCTGCTGCTGC+TGG | - | chr4.4:18467525-18467544 | MS.gene35225:CDS | 70.0% | |
| GCAGCAGCAGCAGTTGCCGG+TGG | + | chr4.4:18467525-18467544 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18466132 | 18469300 | 18466132 | ID=MS.gene35225 |
| chr4.4 | mRNA | 18466132 | 18469300 | 18466132 | ID=MS.gene35225.t1;Parent=MS.gene35225 |
| chr4.4 | exon | 18469175 | 18469300 | 18469175 | ID=MS.gene35225.t1.exon1;Parent=MS.gene35225.t1 |
| chr4.4 | CDS | 18469175 | 18469300 | 18469175 | ID=cds.MS.gene35225.t1;Parent=MS.gene35225.t1 |
| chr4.4 | exon | 18468068 | 18468178 | 18468068 | ID=MS.gene35225.t1.exon2;Parent=MS.gene35225.t1 |
| chr4.4 | CDS | 18468068 | 18468178 | 18468068 | ID=cds.MS.gene35225.t1;Parent=MS.gene35225.t1 |
| chr4.4 | exon | 18466132 | 18467934 | 18466132 | ID=MS.gene35225.t1.exon3;Parent=MS.gene35225.t1 |
| chr4.4 | CDS | 18466132 | 18467934 | 18466132 | ID=cds.MS.gene35225.t1;Parent=MS.gene35225.t1 |
| Gene Sequence |
| Protein sequence |
