AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35257

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35257.t1 MTR_5g029470 96.535 404 8 4 1 400 1 402 0.0 782
MS.gene35257.t1 MTR_8g066310 56.790 405 114 17 1 397 1 352 3.99e-122 358
MS.gene35257.t1 MTR_3g064840 52.968 219 65 8 199 399 256 454 2.29e-51 179
MS.gene35257.t1 MTR_1g021520 46.032 189 72 7 211 399 120 278 6.32e-37 136
MS.gene35257.t1 MTR_6g071625 76.744 86 18 1 199 282 182 267 2.65e-36 136
MS.gene35257.t1 MTR_7g069660 45.763 118 45 3 176 291 45 145 1.05e-22 98.6
MS.gene35257.t1 MTR_1g112370 48.113 106 47 4 216 315 21 124 6.24e-21 93.2
MS.gene35257.t1 MTR_0223s0040 65.517 58 20 0 216 273 17 74 8.68e-21 92.0
MS.gene35257.t1 MTR_2g023580 59.722 72 28 1 210 281 49 119 5.20e-20 88.6
MS.gene35257.t1 MTR_2g084230 68.966 58 18 0 216 273 96 153 1.09e-19 89.4
MS.gene35257.t1 MTR_2g084230 68.966 58 18 0 216 273 96 153 1.66e-19 89.7
MS.gene35257.t1 MTR_8g086410 64.062 64 22 1 216 279 108 170 3.63e-19 89.4
MS.gene35257.t1 MTR_8g086410 64.062 64 22 1 216 279 110 172 3.74e-19 89.0
MS.gene35257.t1 MTR_2g016220 58.571 70 28 1 216 285 88 156 4.45e-18 85.5
MS.gene35257.t1 MTR_2g016220 58.571 70 28 1 216 285 88 156 4.51e-18 85.5
MS.gene35257.t1 MTR_7g098250 61.905 63 24 0 211 273 256 318 1.27e-17 84.7
MS.gene35257.t1 MTR_8g086410 64.286 56 20 0 216 271 110 165 2.72e-17 83.6
MS.gene35257.t1 MTR_1g080330 63.333 60 22 0 214 273 172 231 4.64e-17 81.3
MS.gene35257.t1 MTR_1g080330 63.333 60 22 0 214 273 172 231 5.06e-17 82.4
MS.gene35257.t1 MTR_7g115530 64.286 56 20 0 218 273 219 274 8.72e-17 80.9
MS.gene35257.t1 MTR_5g027440 69.811 53 16 0 218 270 26 78 9.12e-17 80.5
MS.gene35257.t1 MTR_3g450310 58.929 56 23 0 218 273 20 75 9.86e-17 79.0
MS.gene35257.t1 MTR_7g115530 64.286 56 20 0 218 273 219 274 1.75e-16 80.1
MS.gene35257.t1 MTR_7g115530 64.286 56 20 0 218 273 219 274 2.18e-16 80.9
MS.gene35257.t1 MTR_7g115530 64.286 56 20 0 218 273 219 274 2.32e-16 80.1
MS.gene35257.t1 MTR_7g093030 52.941 68 30 1 219 286 214 279 2.73e-16 79.3
MS.gene35257.t1 MTR_2g016220 55.405 74 28 2 216 285 88 160 3.51e-16 79.7
MS.gene35257.t1 MTR_7g093030 60.000 55 22 0 219 273 214 268 5.69e-16 79.3
MS.gene35257.t1 MTR_5g041350 44.872 78 43 0 218 295 16 93 1.67e-15 77.8
MS.gene35257.t1 MTR_7g088070 61.818 55 21 0 219 273 52 106 1.84e-15 76.6
MS.gene35257.t1 MTR_7g088070 61.818 55 21 0 219 273 52 106 2.05e-15 76.3
MS.gene35257.t1 MTR_1g053835 60.000 55 22 0 219 273 260 314 2.58e-15 77.4
MS.gene35257.t1 MTR_2g027860 50.649 77 36 1 219 295 51 125 2.75e-15 76.6
MS.gene35257.t1 MTR_1g090670 58.333 60 25 0 218 277 45 104 4.93e-15 75.5
MS.gene35257.t1 MTR_2g086450 58.929 56 23 0 218 273 46 101 5.00e-15 76.6
MS.gene35257.t1 MTR_6g444980 58.929 56 23 0 218 273 36 91 6.72e-15 75.9
MS.gene35257.t1 MTR_6g444980 58.929 56 23 0 218 273 36 91 7.29e-15 75.9
MS.gene35257.t1 MTR_2g027800 50.000 74 34 1 218 288 40 113 8.75e-15 75.1
MS.gene35257.t1 MTR_7g115530 63.462 52 19 0 218 269 219 270 1.85e-14 73.9
MS.gene35257.t1 MTR_6g032990 56.140 57 25 0 218 274 43 99 2.19e-14 74.7
MS.gene35257.t1 MTR_2g027800 62.264 53 20 0 218 270 40 92 2.45e-14 73.6
MS.gene35257.t1 MTR_7g115530 66.000 50 17 0 218 267 219 268 2.73e-14 73.2
MS.gene35257.t1 MTR_4g081710 54.386 57 26 0 218 274 18 74 9.76e-14 72.0
MS.gene35257.t1 MTR_1g053830 50.909 55 27 0 219 273 20 74 5.31e-12 62.4
MS.gene35257.t1 MTR_7g068600 55.172 58 23 1 219 273 15 72 7.39e-12 65.1
MS.gene35257.t1 MTR_1g053800 52.830 53 25 0 219 271 179 231 8.06e-12 66.2
MS.gene35257.t1 MTR_7g093010 39.535 86 49 1 219 304 215 297 1.41e-11 65.9
MS.gene35257.t1 MTR_2g450070 38.462 104 57 2 214 311 210 312 2.66e-11 65.9
MS.gene35257.t1 MTR_2g450070 43.210 81 39 2 214 288 210 289 2.88e-11 65.9
MS.gene35257.t1 MTR_4g086835 51.282 78 34 2 216 291 273 348 3.56e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35257.t1 AT1G32240 54.087 416 143 14 1 398 1 386 8.52e-102 307
MS.gene35257.t1 AT1G32240 53.514 370 128 11 1 354 1 342 4.54e-93 284
MS.gene35257.t1 AT4G17695 38.795 415 141 14 1 399 1 318 1.37e-61 201
MS.gene35257.t1 AT5G16560 37.995 379 150 15 76 399 50 398 1.64e-48 170
MS.gene35257.t1 AT1G32240 61.589 151 42 7 252 398 1 139 7.76e-39 136
MS.gene35257.t1 AT5G42630 80.000 75 15 0 212 286 100 174 1.96e-35 130
MS.gene35257.t1 AT5G42630 59.016 122 43 2 212 329 100 218 5.23e-35 130
MS.gene35257.t1 AT2G38300 55.000 80 35 1 210 289 48 126 5.08e-21 93.6
MS.gene35257.t1 AT2G02060 72.222 54 15 0 217 270 29 82 5.13e-20 89.4
MS.gene35257.t1 AT2G02060 72.222 54 15 0 217 270 29 82 5.13e-20 89.4
MS.gene35257.t1 AT1G14600 66.102 59 20 0 217 275 23 81 1.06e-19 88.2
MS.gene35257.t1 AT4G04605 65.517 58 20 0 216 273 13 70 1.20e-19 87.4
MS.gene35257.t1 AT5G45580 46.087 115 53 3 218 324 8 121 2.06e-19 87.8
MS.gene35257.t1 AT5G45580 46.087 115 53 3 218 324 24 137 3.58e-19 87.4
MS.gene35257.t1 AT2G40260 62.687 67 24 1 210 276 76 141 1.56e-18 87.0
MS.gene35257.t1 AT4G04580 59.322 59 24 0 218 276 15 73 4.59e-18 81.6
MS.gene35257.t1 AT2G42660 66.071 56 19 0 218 273 51 106 8.26e-18 82.8
MS.gene35257.t1 AT4G04555 53.425 73 31 2 201 273 1 70 6.59e-17 76.3
MS.gene35257.t1 AT4G28610 65.455 55 19 0 219 273 227 281 3.64e-16 80.1
MS.gene35257.t1 AT3G12730 62.500 56 21 0 218 273 24 79 4.81e-16 77.4
MS.gene35257.t1 AT5G29000 52.778 72 34 0 219 290 233 304 1.24e-15 77.4
MS.gene35257.t1 AT2G01060 63.636 55 20 0 219 273 17 71 1.66e-15 76.6
MS.gene35257.t1 AT3G04450 56.250 64 28 0 210 273 231 294 1.86e-15 77.0
MS.gene35257.t1 AT3G04450 54.286 70 31 1 205 273 185 254 2.98e-15 77.4
MS.gene35257.t1 AT3G04450 54.286 70 31 1 205 273 185 254 2.98e-15 77.4
MS.gene35257.t1 AT3G24120 62.264 53 20 0 218 270 42 94 2.98e-15 76.3
MS.gene35257.t1 AT3G24120 62.264 53 20 0 218 270 42 94 3.11e-15 76.3
MS.gene35257.t1 AT3G04450 54.286 70 31 1 205 273 225 294 3.14e-15 77.4
MS.gene35257.t1 AT5G29000 54.545 66 30 0 219 284 190 255 3.54e-15 77.0
MS.gene35257.t1 AT5G29000 54.545 66 30 0 219 284 190 255 3.54e-15 77.0
MS.gene35257.t1 AT5G29000 54.545 66 30 0 219 284 233 298 5.00e-15 76.6
MS.gene35257.t1 AT1G79430 58.929 56 23 0 218 273 35 90 5.13e-15 76.3
MS.gene35257.t1 AT4G13640 60.377 53 21 0 218 270 38 90 1.05e-14 74.7
MS.gene35257.t1 AT4G13640 60.377 53 21 0 218 270 38 90 1.06e-14 74.7
MS.gene35257.t1 AT5G06800 50.794 63 31 0 211 273 186 248 2.55e-14 73.2
MS.gene35257.t1 AT5G18240 55.357 56 25 0 218 273 46 101 4.56e-14 73.6
MS.gene35257.t1 AT5G18240 55.357 56 25 0 218 273 46 101 4.56e-14 73.6
MS.gene35257.t1 AT5G18240 55.357 56 25 0 218 273 46 101 4.73e-14 73.6
MS.gene35257.t1 AT3G04030 53.571 56 26 0 218 273 46 101 4.94e-14 73.6
MS.gene35257.t1 AT5G18240 55.357 56 25 0 218 273 46 101 5.13e-14 73.6
MS.gene35257.t1 AT5G18240 55.357 56 25 0 218 273 46 101 5.13e-14 73.6
MS.gene35257.t1 AT3G04030 53.571 56 26 0 218 273 46 101 5.52e-14 73.6
MS.gene35257.t1 AT3G13040 46.154 104 50 3 174 273 196 297 6.38e-14 73.6
MS.gene35257.t1 AT3G13040 46.154 104 50 3 174 273 196 297 6.38e-14 73.6
MS.gene35257.t1 AT3G13040 46.154 104 50 3 174 273 196 297 6.38e-14 73.6
MS.gene35257.t1 AT2G20400 63.636 55 20 0 219 273 233 287 6.90e-14 73.2
MS.gene35257.t1 AT2G20400 63.636 55 20 0 219 273 233 287 7.19e-14 73.2
MS.gene35257.t1 AT5G06800 56.364 55 24 0 219 273 194 248 9.67e-14 72.4
MS.gene35257.t1 AT5G06800 56.364 55 24 0 219 273 194 248 9.84e-14 72.4
MS.gene35257.t1 AT2G06020 55.738 61 27 0 219 279 88 148 1.71e-13 71.2
MS.gene35257.t1 AT1G69580 50.877 57 28 0 218 274 35 91 1.06e-12 68.9
MS.gene35257.t1 AT1G69580 50.877 57 28 0 218 274 35 91 1.11e-12 68.9
MS.gene35257.t1 AT3G04030 51.786 56 26 1 218 273 46 100 1.48e-11 65.9
MS.gene35257.t1 AT2G03500 53.448 58 27 0 213 270 229 286 3.69e-11 65.1

Find 82 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTATTTCCACTATTT+TGG 0.109662 5.4:-19786042 None:intergenic
TGATCTTCCTTGCTGCTTAA+TGG 0.145751 5.4:-19788300 None:intergenic
ATTAGTTCAAGAACTGATTT+TGG 0.179424 5.4:-19786785 None:intergenic
AAATCCAAATTAGGTTTCTT+TGG 0.203381 5.4:-19790796 None:intergenic
GTGAATTCCAAATCCAAATT+AGG 0.218998 5.4:-19790805 None:intergenic
AAGCCCAAAGAAACCTAATT+TGG 0.224728 5.4:+19790792 MS.gene35257:CDS
ATAAGGAATGTTATGGTCTT+TGG 0.242549 5.4:+19788336 MS.gene35257:CDS
AAACCAAAGGTTGATTCTAT+TGG 0.242636 5.4:+19789488 MS.gene35257:CDS
GGTGGTGTTGTTGTGGTTGA+TGG 0.254980 5.4:-19786132 None:intergenic
AGGAAATGGATTTGGGGTTT+TGG 0.258801 5.4:+19785870 MS.gene35257:CDS
AACCAACAACAACAAGTAAT+TGG 0.268823 5.4:+19785825 MS.gene35257:CDS
AAAGAAACCTAATTTGGATT+TGG 0.275662 5.4:+19790798 MS.gene35257:CDS
TTCCAATTACTTGTTGTTGT+TGG 0.279422 5.4:-19785827 None:intergenic
GTTCATGCTGTTGAGCTCTT+AGG 0.283761 5.4:+19786457 MS.gene35257:CDS
GTCTAAGAAAACCAAGTTCT+TGG 0.298952 5.4:-19786165 None:intergenic
CACAGAAGAGGAAATGGATT+TGG 0.299354 5.4:+19785862 MS.gene35257:CDS
ACAGAAGAGGAAATGGATTT+GGG 0.314344 5.4:+19785863 MS.gene35257:CDS
AAAATCAGTTCTTGAACTAA+TGG 0.321394 5.4:+19786787 MS.gene35257:CDS
AATCATCTTCATATTCTTGA+TGG 0.324988 5.4:+19786271 MS.gene35257:CDS
GAAGATGAAGCATACTTTCA+TGG 0.330340 5.4:-19786483 None:intergenic
ACATGTCAAGTCTCACTTAC+AGG 0.334902 5.4:+19786832 MS.gene35257:CDS
AATCCAAATTAGGTTTCTTT+GGG 0.339574 5.4:-19790795 None:intergenic
TTTGAATCTAAAGGCTTTGT+TGG 0.343931 5.4:-19785980 None:intergenic
TCTTTGGGCTTGATCCTGAT+AGG 0.348645 5.4:-19790780 None:intergenic
CAAGTTCTTGGCTTAAGCTT+TGG 0.365718 5.4:-19786153 None:intergenic
CTAATTTGCAAAGACAAATC+TGG 0.371942 5.4:-19785788 None:intergenic
CTCTCATAGCTTAGACACTT+TGG 0.377871 5.4:-19790730 None:intergenic
ATGGTGTTGAAAGAGTGGTT+GGG 0.383264 5.4:-19786113 None:intergenic
TAAACAGGAATTCCTCTAAT+AGG 0.385929 5.4:-19786187 None:intergenic
TGAAGTTGAGGGAATGATAA+AGG 0.400321 5.4:-19786223 None:intergenic
CATCATCACTTCCAAAATAG+TGG 0.402204 5.4:+19786031 MS.gene35257:CDS
AACAAACACAGAAGAGGAAA+TGG 0.404086 5.4:+19785856 MS.gene35257:CDS
GTCTTTGGAGCAACTCTTCT+CGG 0.404869 5.4:+19788351 MS.gene35257:CDS
AGTTCATCTACAAACCTATC+AGG 0.408228 5.4:+19790766 MS.gene35257:CDS
GTTCTTGGCTTAAGCTTTGG+TGG 0.418363 5.4:-19786150 None:intergenic
TTTCCAATAGAATCAACCTT+TGG 0.420087 5.4:-19789491 None:intergenic
GTATACGACAATGGATCATC+TGG 0.424138 5.4:+19788218 MS.gene35257:CDS
TTTGATGAAAAGATTGATAA+GGG 0.432631 5.4:-19786072 None:intergenic
AATAGGGAAGCTTGGTTACA+TGG 0.432961 5.4:+19789464 MS.gene35257:intron
ATCAAAGCTTGAGATTGAAA+AGG 0.435034 5.4:-19786346 None:intergenic
AAACTCTTTATCATCATCAA+TGG 0.438055 5.4:+19785913 MS.gene35257:CDS
AATCAAGATAAGGAATGTTA+TGG 0.445329 5.4:+19788329 MS.gene35257:CDS
GATGGTGTTGAAAGAGTGGT+TGG 0.452166 5.4:-19786114 None:intergenic
TCAAAGCTTGAGATTGAAAA+GGG 0.452273 5.4:-19786345 None:intergenic
TGGTGTTGAAAGAGTGGTTG+GGG 0.461747 5.4:-19786112 None:intergenic
TTGTTGTTAGAAATAGTAGA+AGG 0.465912 5.4:-19786307 None:intergenic
CAAAGCTTAAGCCAAGAACT+TGG 0.469777 5.4:+19786154 MS.gene35257:CDS
TGAGGGAATGATAAAGGAGG+AGG 0.480787 5.4:-19786217 None:intergenic
GATTATGATTATGAAGTTGA+GGG 0.482816 5.4:-19786234 None:intergenic
GTAGTAGTCCAACGCATCCT+TGG 0.484429 5.4:-19786418 None:intergenic
TTGGTTGTAATAGGGAAGCT+TGG 0.485851 5.4:+19789456 MS.gene35257:intron
AATCTCAAAGAGGTTGGCCT+AGG 0.496863 5.4:-19790828 None:intergenic
GATAGAGTAGGAGCTTCATC+AGG 0.511299 5.4:+19788058 MS.gene35257:CDS
ATCAAGTGTTAATCAAGATA+AGG 0.511492 5.4:+19788319 MS.gene35257:CDS
TGATTATGATTATGAAGTTG+AGG 0.522631 5.4:-19786235 None:intergenic
AAGCTTTGGTGGTGTTGTTG+TGG 0.526343 5.4:-19786139 None:intergenic
TTGGATTTGGAATTCACCCT+AGG 0.535688 5.4:+19790811 MS.gene35257:CDS
GGTTGATGGTGTTGAAAGAG+TGG 0.538405 5.4:-19786118 None:intergenic
TTCAATCTCAAGCTTTGATG+AGG 0.545726 5.4:+19786350 MS.gene35257:CDS
GAGGGAATGATAAAGGAGGA+GGG 0.550824 5.4:-19786216 None:intergenic
TGAGAGCTCCAAGGATGCGT+TGG 0.554044 5.4:+19786410 MS.gene35257:CDS
CATGCTGTTGAGCTCTTAGG+TGG 0.554981 5.4:+19786460 MS.gene35257:CDS
AAAGACAAATCTGGTTGTGC+TGG 0.558095 5.4:-19785779 None:intergenic
TGGAAACATGCAATCTCTTG+AGG 0.562071 5.4:+19789508 MS.gene35257:CDS
GAGAACAACAAACACAGAAG+AGG 0.568948 5.4:+19785850 MS.gene35257:CDS
GGAAGTGATGATGATGAATG+AGG 0.577883 5.4:-19786021 None:intergenic
TCTTGAACTAATGGATGTGA+AGG 0.578980 5.4:+19786796 MS.gene35257:CDS
GTGTTGTTGTTTGAATCTAA+AGG 0.580441 5.4:-19785989 None:intergenic
TTGTTGGATTTGAAAGAGAG+AGG 0.584330 5.4:-19785964 None:intergenic
CAGAAGAGGAAATGGATTTG+GGG 0.591791 5.4:+19785864 MS.gene35257:CDS
ATCTCAAAGAGGTTGGCCTA+GGG 0.597654 5.4:-19790827 None:intergenic
TTGGTTACATGGTAAACCAA+AGG 0.600087 5.4:+19789475 MS.gene35257:CDS
GGGTGAAATCTCAAAGAGGT+TGG 0.613965 5.4:-19790834 None:intergenic
AGTTGAGGGAATGATAAAGG+AGG 0.618652 5.4:-19786220 None:intergenic
CAATCTGATGTATACGACAA+TGG 0.619241 5.4:+19788209 MS.gene35257:CDS
GTGAAAACTACAGATAGAGT+AGG 0.620063 5.4:+19788046 MS.gene35257:CDS
TTAAATCCAGATGTATCGGA+CGG 0.625352 5.4:+19788024 MS.gene35257:intron
AAAGAAGCATGAGAGCTCCA+AGG 0.647856 5.4:+19786401 MS.gene35257:CDS
GATTTATCCATTAAGCAGCA+AGG 0.648761 5.4:+19788293 MS.gene35257:CDS
AGCTATGAGAGAATATCAGA+TGG 0.655293 5.4:+19790742 MS.gene35257:CDS
GGTGTTGAAAGAGTGGTTGG+GGG 0.661980 5.4:-19786111 None:intergenic
GCTAGGGTGAAATCTCAAAG+AGG 0.685178 5.4:-19790838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTTTTTTTAT+CGG - chr5.4:19787499-19787518 None:intergenic 0.0%
!! ATATAAATTATCATATAGTA+TGG - chr5.4:19789943-19789962 None:intergenic 10.0%
!!! ATTTGATTTTGTAATTTTAA+TGG + chr5.4:19790583-19790602 MS.gene35257:intron 10.0%
!!! CTAATAATATGATTTAATTT+TGG + chr5.4:19787940-19787959 MS.gene35257:intron 10.0%
!!! CTTAAAAATATATTTCTTTT+TGG + chr5.4:19786518-19786537 MS.gene35257:intron 10.0%
!! AAAAAAATATATTCGAATTG+AGG + chr5.4:19787404-19787423 MS.gene35257:intron 15.0%
!! AAAGAATATTTATATGAATG+AGG - chr5.4:19790125-19790144 None:intergenic 15.0%
!! AAGAATATTTATATGAATGA+GGG - chr5.4:19790124-19790143 None:intergenic 15.0%
!! ACAAAAAAAAAAATGGAAAA+GGG - chr5.4:19790642-19790661 None:intergenic 15.0%
!! AGAAAAAAGAAAGAAAAAAA+AGG + chr5.4:19789709-19789728 MS.gene35257:intron 15.0%
!! AGTATAAAAAAAAGGATTAT+AGG - chr5.4:19788404-19788423 None:intergenic 15.0%
!! ATATATAGTCATAGAATAAA+TGG + chr5.4:19789276-19789295 MS.gene35257:intron 15.0%
!! ATATTAATTTCAAATTCCAA+TGG + chr5.4:19787063-19787082 MS.gene35257:intron 15.0%
!! GTTAAAGAAAATTAAAACAA+GGG - chr5.4:19786586-19786605 None:intergenic 15.0%
!! TACAAAAAAAAAAATGGAAA+AGG - chr5.4:19790643-19790662 None:intergenic 15.0%
!! TCTATGACTATATATAATAT+AGG - chr5.4:19789271-19789290 None:intergenic 15.0%
!! TGTTAAAGAAAATTAAAACA+AGG - chr5.4:19786587-19786606 None:intergenic 15.0%
!! TTCTATCATATATTAATTGT+TGG + chr5.4:19788097-19788116 MS.gene35257:intron 15.0%
!! TTTATATACTTATACATTAG+AGG + chr5.4:19787023-19787042 MS.gene35257:intron 15.0%
!!! AATAACTTTTTCAAAACAAA+AGG - chr5.4:19789568-19789587 None:intergenic 15.0%
!!! ATTTTTTTAAGGAAGATTTT+TGG - chr5.4:19789086-19789105 None:intergenic 15.0%
!!! GAAATATATTTTTAAGAAAG+TGG - chr5.4:19786514-19786533 None:intergenic 15.0%
!!! GATTTTATATTCTTTTAAGT+TGG - chr5.4:19787212-19787231 None:intergenic 15.0%
!!! GTTTTATATACACAAATAAT+TGG + chr5.4:19790022-19790041 MS.gene35257:intron 15.0%
!!! TCAATTCGAATATATTTTTT+TGG - chr5.4:19787405-19787424 None:intergenic 15.0%
!!! TTATATAGTCATTTTCAATA+TGG - chr5.4:19789868-19789887 None:intergenic 15.0%
!! AAAAAGAAAAGCAAAACTTA+AGG - chr5.4:19789400-19789419 None:intergenic 20.0%
!! AAAATACGATTCAAAAGAAA+CGG - chr5.4:19790464-19790483 None:intergenic 20.0%
!! AAAGTAAAAAGCTGTTTATT+AGG - chr5.4:19787175-19787194 None:intergenic 20.0%
!! AAGACAATTAGAAGAAAAAA+GGG + chr5.4:19786619-19786638 MS.gene35257:intron 20.0%
!! AATTAATAACTCTTAACTAG+AGG - chr5.4:19789843-19789862 None:intergenic 20.0%
!! ACAAAACAAAACAAAATGAT+AGG + chr5.4:19787644-19787663 MS.gene35257:intron 20.0%
!! ATATTATTATTACACCATCA+TGG - chr5.4:19788967-19788986 None:intergenic 20.0%
!! ATGATGAGAATATGATTAAA+GGG - chr5.4:19790245-19790264 None:intergenic 20.0%
!! GTAATTAAGCTAGAATAAAA+AGG - chr5.4:19786562-19786581 None:intergenic 20.0%
!! GTTTCAAGATTTCTAATTAT+GGG - chr5.4:19789211-19789230 None:intergenic 20.0%
!! TATGATGAGAATATGATTAA+AGG - chr5.4:19790246-19790265 None:intergenic 20.0%
!! TTAAGACAAATTAGAGTTTA+AGG - chr5.4:19786861-19786880 None:intergenic 20.0%
!! TTTGATGAAAAGATTGATAA+GGG - chr5.4:19786075-19786094 None:intergenic 20.0%
!!! AATTTTAAATCCAGATGTAT+CGG + chr5.4:19788020-19788039 MS.gene35257:intron 20.0%
!!! CAATCTTTAGAATAAGTAAA+AGG + chr5.4:19789339-19789358 MS.gene35257:intron 20.0%
!!! CATTATTATTTCCACTATTT+TGG - chr5.4:19786045-19786064 None:intergenic 20.0%
!!! CTTTTACTTATTCTAAAGAT+TGG - chr5.4:19789341-19789360 None:intergenic 20.0%
!!! GAATATATTTTTTTGGTACT+TGG - chr5.4:19787398-19787417 None:intergenic 20.0%
!!! GAGATATCTCTATTTTTTTA+AGG - chr5.4:19789097-19789116 None:intergenic 20.0%
!!! TACTAATTTTATTAATGGCA+TGG - chr5.4:19787332-19787351 None:intergenic 20.0%
!!! TTATATTCTTTTAAGTTGGA+TGG - chr5.4:19787208-19787227 None:intergenic 20.0%
!!! TTTTATAATATGCATATGCA+TGG - chr5.4:19787781-19787800 None:intergenic 20.0%
!!! TTTTGATGAAAAGATTGATA+AGG - chr5.4:19786076-19786095 None:intergenic 20.0%
! AAAATCAGTTCTTGAACTAA+TGG + chr5.4:19786787-19786806 MS.gene35257:CDS 25.0%
! AAACTCTTTATCATCATCAA+TGG + chr5.4:19785913-19785932 MS.gene35257:CDS 25.0%
! AAAGAAACCTAATTTGGATT+TGG + chr5.4:19790798-19790817 MS.gene35257:CDS 25.0%
! AAATCCAAATTAGGTTTCTT+TGG - chr5.4:19790799-19790818 None:intergenic 25.0%
! AAATTACTGTGAGTATGAAA+GGG - chr5.4:19790207-19790226 None:intergenic 25.0%
! AACGATTTGTGATGTAAAAA+AGG + chr5.4:19789815-19789834 MS.gene35257:intron 25.0%
! AATCAAGATAAGGAATGTTA+TGG + chr5.4:19788329-19788348 MS.gene35257:CDS 25.0%
! AATCATCTTCATATTCTTGA+TGG + chr5.4:19786271-19786290 MS.gene35257:CDS 25.0%
! AATCCAAATTAGGTTTCTTT+GGG - chr5.4:19790798-19790817 None:intergenic 25.0%
! ACTTCTTTCTCAAATTCTTT+AGG + chr5.4:19787542-19787561 MS.gene35257:intron 25.0%
! AGTATATAGTATTAGAGAAC+AGG - chr5.4:19790184-19790203 None:intergenic 25.0%
! AGTCAAAGGTTTAAACTTTA+AGG - chr5.4:19787525-19787544 None:intergenic 25.0%
! ATCAAGTGTTAATCAAGATA+AGG + chr5.4:19788319-19788338 MS.gene35257:CDS 25.0%
! ATTAAGCTAGAATAAAAAGG+AGG - chr5.4:19786559-19786578 None:intergenic 25.0%
! CAAGACAATTAGAAGAAAAA+AGG + chr5.4:19786618-19786637 MS.gene35257:intron 25.0%
! GATTATGATTATGAAGTTGA+GGG - chr5.4:19786237-19786256 None:intergenic 25.0%
! GGTTTCAAGATTTCTAATTA+TGG - chr5.4:19789212-19789231 None:intergenic 25.0%
! TAAATTACTGTGAGTATGAA+AGG - chr5.4:19790208-19790227 None:intergenic 25.0%
! TAGAATAAAAAGGAGGATTA+AGG - chr5.4:19786552-19786571 None:intergenic 25.0%
! TATTTATATGAATGAGGGAA+AGG - chr5.4:19790119-19790138 None:intergenic 25.0%
! TCACATTTACCAATTACAAA+AGG + chr5.4:19789787-19789806 MS.gene35257:intron 25.0%
! TCATTTGACTCAATTATCAA+TGG + chr5.4:19789911-19789930 MS.gene35257:intron 25.0%
! TGATTATGATTATGAAGTTG+AGG - chr5.4:19786238-19786257 None:intergenic 25.0%
! TGGTAAAGAAAGGAAAAAAA+AGG - chr5.4:19787726-19787745 None:intergenic 25.0%
! TGTAATTGGTAAATGTGAAA+AGG - chr5.4:19789785-19789804 None:intergenic 25.0%
!! CGTTTTTAACCTTTTGTAAT+TGG - chr5.4:19789799-19789818 None:intergenic 25.0%
!! TAAAAGGCATATAAGTAAGA+TGG + chr5.4:19789355-19789374 MS.gene35257:intron 25.0%
!! TCATTTAAAACAACATCGTT+AGG - chr5.4:19788634-19788653 None:intergenic 25.0%
!! TTGTTGTTAGAAATAGTAGA+AGG - chr5.4:19786310-19786329 None:intergenic 25.0%
!!! AAGGGATTTTTTAGAAGAAA+AGG + chr5.4:19789633-19789652 MS.gene35257:intron 25.0%
!!! AGTTTTGCTTTTCTTTTTCA+TGG + chr5.4:19789402-19789421 MS.gene35257:intron 25.0%
!!! ATATAATATAGGAGCATTCA+TGG - chr5.4:19789260-19789279 None:intergenic 25.0%
!!! ATCTAATACAGAAGCATTTA+TGG - chr5.4:19787810-19787829 None:intergenic 25.0%
!!! ATTAGTTCAAGAACTGATTT+TGG - chr5.4:19786788-19786807 None:intergenic 25.0%
!!! CTTAACCTTTGGAATATAAA+GGG - chr5.4:19789545-19789564 None:intergenic 25.0%
!!! TTAACCTTTGGAATATAAAG+GGG - chr5.4:19789544-19789563 None:intergenic 25.0%
!!! TTGTTATTTGCTTTTTCAGA+AGG + chr5.4:19790699-19790718 MS.gene35257:intron 25.0%
!!! TTTTTTTCCTTTCTTTACCA+TGG + chr5.4:19787726-19787745 MS.gene35257:intron 25.0%
AAAACAAAAGGCTTAACCTT+TGG - chr5.4:19789556-19789575 None:intergenic 30.0%
AAACATTATACCATTCATGC+AGG - chr5.4:19790006-19790025 None:intergenic 30.0%
AAATGAAGCAGGTTTAATAG+GGG - chr5.4:19789897-19789916 None:intergenic 30.0%
AACCAACAACAACAAGTAAT+TGG + chr5.4:19785825-19785844 MS.gene35257:CDS 30.0%
AACGAGATATAGTTGCAATA+TGG - chr5.4:19788600-19788619 None:intergenic 30.0%
AAGAGATCATTGAGTAATGA+TGG - chr5.4:19787691-19787710 None:intergenic 30.0%
AATCCTATATAAATGCTGTG+TGG + chr5.4:19790320-19790339 MS.gene35257:intron 30.0%
AATTCAATGTGTTGTCGAAT+AGG - chr5.4:19790499-19790518 None:intergenic 30.0%
AGAAATATTCTCTCTGTGTT+TGG + chr5.4:19789437-19789456 MS.gene35257:intron 30.0%
ATAAGGAATGTTATGGTCTT+TGG + chr5.4:19788336-19788355 MS.gene35257:CDS 30.0%
ATAATTGAGTCAAATGAAGC+AGG - chr5.4:19789908-19789927 None:intergenic 30.0%
ATAGAGATATCTCTTTCCTT+AGG + chr5.4:19789104-19789123 MS.gene35257:intron 30.0%
ATCAAAGCTTGAGATTGAAA+AGG - chr5.4:19786349-19786368 None:intergenic 30.0%
CAAATGAAGCAGGTTTAATA+GGG - chr5.4:19789898-19789917 None:intergenic 30.0%
CAAATTTCAAAGCATGTGTT+TGG + chr5.4:19789601-19789620 MS.gene35257:intron 30.0%
CAAGTAACAACTTTACTTAG+AGG + chr5.4:19787865-19787884 MS.gene35257:intron 30.0%
CACTAAGTTTCTCATTTGTT+GGG - chr5.4:19789167-19789186 None:intergenic 30.0%
CTCTCATTACTCATAGTAAA+AGG - chr5.4:19790297-19790316 None:intergenic 30.0%
GAATTTGAGAAAGAAGTCAA+AGG - chr5.4:19787539-19787558 None:intergenic 30.0%
GTGAATTCCAAATCCAAATT+AGG - chr5.4:19790808-19790827 None:intergenic 30.0%
TAAACAGGAATTCCTCTAAT+AGG - chr5.4:19786190-19786209 None:intergenic 30.0%
TATACTCTCTCAAAATCCAA+CGG - chr5.4:19788525-19788544 None:intergenic 30.0%
TATGATTAAAGGGCTAAAAG+AGG - chr5.4:19790235-19790254 None:intergenic 30.0%
TATTGCCATGCACATTATTA+TGG + chr5.4:19789677-19789696 MS.gene35257:intron 30.0%
TCAAAGCTTGAGATTGAAAA+GGG - chr5.4:19786348-19786367 None:intergenic 30.0%
TCAAATGAAGCAGGTTTAAT+AGG - chr5.4:19789899-19789918 None:intergenic 30.0%
TTCAAAGGGAATATTTGCTT+TGG - chr5.4:19789233-19789252 None:intergenic 30.0%
TTCTAATTATGGGACTACAA+GGG - chr5.4:19789201-19789220 None:intergenic 30.0%
TTCTTTAGTCAGATTGAAGA+TGG + chr5.4:19786942-19786961 MS.gene35257:intron 30.0%
TTTCCAATAGAATCAACCTT+TGG - chr5.4:19789494-19789513 None:intergenic 30.0%
TTTCTAATTATGGGACTACA+AGG - chr5.4:19789202-19789221 None:intergenic 30.0%
! AAACCAAAGGTTGATTCTAT+TGG + chr5.4:19789488-19789507 MS.gene35257:CDS 30.0%
! ATCGATTTCTGAAAACAAGT+AGG + chr5.4:19787253-19787272 MS.gene35257:intron 30.0%
! CTAATTTGCAAAGACAAATC+TGG - chr5.4:19785791-19785810 None:intergenic 30.0%
! TATTACACCATCATGGATTT+TGG - chr5.4:19788960-19788979 None:intergenic 30.0%
! TTTACTTCCTTTTGAACAAC+TGG - chr5.4:19789000-19789019 None:intergenic 30.0%
! TTTGAATCTAAAGGCTTTGT+TGG - chr5.4:19785983-19786002 None:intergenic 30.0%
!! GCTTAACCTTTGGAATATAA+AGG - chr5.4:19789546-19789565 None:intergenic 30.0%
!! GTGTTGTTGTTTGAATCTAA+AGG - chr5.4:19785992-19786011 None:intergenic 30.0%
!! GTGTTTGAATGTTTGCTATA+GGG + chr5.4:19786756-19786775 MS.gene35257:intron 30.0%
!! TAACCTTTGGAATATAAAGG+GGG - chr5.4:19789543-19789562 None:intergenic 30.0%
!! TACAGAAGCATTTATGGTTA+TGG - chr5.4:19787804-19787823 None:intergenic 30.0%
!! TGTTTGAATGTTTGCTATAG+GGG + chr5.4:19786757-19786776 MS.gene35257:intron 30.0%
!! TTCCAATTACTTGTTGTTGT+TGG - chr5.4:19785830-19785849 None:intergenic 30.0%
!!! GTTGTTGTTGGTTTTGTATT+TGG - chr5.4:19785818-19785837 None:intergenic 30.0%
!!! TTTGCTTTTTCAGAAGGAAA+TGG + chr5.4:19790705-19790724 MS.gene35257:intron 30.0%
AAAACAACATCGTTAGGCTT+TGG - chr5.4:19788628-19788647 None:intergenic 35.0%
AAACATTAGGCTCTTGTATG+GGG + chr5.4:19789141-19789160 MS.gene35257:intron 35.0%
AACAAACACAGAAGAGGAAA+TGG + chr5.4:19785856-19785875 MS.gene35257:CDS 35.0%
AAGATGGTACGATTCTGATT+GGG + chr5.4:19786958-19786977 MS.gene35257:intron 35.0%
AAGCCCAAAGAAACCTAATT+TGG + chr5.4:19790792-19790811 MS.gene35257:CDS 35.0%
AATGAAGCAGGTTTAATAGG+GGG - chr5.4:19789896-19789915 None:intergenic 35.0%
AGCATTCATGGAAGTTTCAA+AGG - chr5.4:19789248-19789267 None:intergenic 35.0%
AGCTATGAGAGAATATCAGA+TGG + chr5.4:19790742-19790761 MS.gene35257:CDS 35.0%
AGTTCATCTACAAACCTATC+AGG + chr5.4:19790766-19790785 MS.gene35257:CDS 35.0%
ATTCCCCCTTTATATTCCAA+AGG + chr5.4:19789537-19789556 MS.gene35257:intron 35.0%
ATTCCTATATAACCACTGCA+TGG - chr5.4:19790423-19790442 None:intergenic 35.0%
ATTGAGAGAAACCCTTTCTA+AGG - chr5.4:19787092-19787111 None:intergenic 35.0%
ATTTATACTCACCTGACAAG+TGG + chr5.4:19788680-19788699 MS.gene35257:intron 35.0%
CAAACATTAGGCTCTTGTAT+GGG + chr5.4:19789140-19789159 MS.gene35257:intron 35.0%
CAATCTGATGTATACGACAA+TGG + chr5.4:19788209-19788228 MS.gene35257:CDS 35.0%
CATCATCACTTCCAAAATAG+TGG + chr5.4:19786031-19786050 MS.gene35257:CDS 35.0%
CATCTCCATAATAATGTGCA+TGG - chr5.4:19789685-19789704 None:intergenic 35.0%
CTCCCTTAAACCATGAAATA+GGG + chr5.4:19788186-19788205 MS.gene35257:intron 35.0%
CTCTGTGTTTGGTTGTAATA+GGG + chr5.4:19789448-19789467 MS.gene35257:intron 35.0%
GAAGATGAAGCATACTTTCA+TGG - chr5.4:19786486-19786505 None:intergenic 35.0%
GATTTATCCATTAAGCAGCA+AGG + chr5.4:19788293-19788312 MS.gene35257:CDS 35.0%
GCACTAAGTTTCTCATTTGT+TGG - chr5.4:19789168-19789187 None:intergenic 35.0%
GCATTCATGGAAGTTTCAAA+GGG - chr5.4:19789247-19789266 None:intergenic 35.0%
GTCTAAGAAAACCAAGTTCT+TGG - chr5.4:19786168-19786187 None:intergenic 35.0%
GTGAAAACTACAGATAGAGT+AGG + chr5.4:19788046-19788065 MS.gene35257:CDS 35.0%
TAGTATTAGAGAACAGGTAG+AGG - chr5.4:19790178-19790197 None:intergenic 35.0%
TCAAACATTAGGCTCTTGTA+TGG + chr5.4:19789139-19789158 MS.gene35257:intron 35.0%
TCCAATGGTTTCCTTAGAAA+GGG + chr5.4:19787078-19787097 MS.gene35257:intron 35.0%
TCTAGCACAAATGGCTAAAA+TGG + chr5.4:19787427-19787446 MS.gene35257:intron 35.0%
TCTCCCTTAAACCATGAAAT+AGG + chr5.4:19788185-19788204 MS.gene35257:intron 35.0%
TCTCTGTGTTTGGTTGTAAT+AGG + chr5.4:19789447-19789466 MS.gene35257:intron 35.0%
TGAAGTTGAGGGAATGATAA+AGG - chr5.4:19786226-19786245 None:intergenic 35.0%
TGCCCTATTTCATGGTTTAA+GGG - chr5.4:19788191-19788210 None:intergenic 35.0%
TTAAATCCAGATGTATCGGA+CGG + chr5.4:19788024-19788043 MS.gene35257:intron 35.0%
TTCCAATGGTTTCCTTAGAA+AGG + chr5.4:19787077-19787096 MS.gene35257:intron 35.0%
TTGCCCTATTTCATGGTTTA+AGG - chr5.4:19788192-19788211 None:intergenic 35.0%
TTGGTTACATGGTAAACCAA+AGG + chr5.4:19789475-19789494 MS.gene35257:CDS 35.0%
TTGTTGGATTTGAAAGAGAG+AGG - chr5.4:19785967-19785986 None:intergenic 35.0%
TTTATACTCACCTGACAAGT+GGG + chr5.4:19788681-19788700 MS.gene35257:intron 35.0%
! AACTATGAGGTAGTTTGTCT+TGG - chr5.4:19787305-19787324 None:intergenic 35.0%
! ACAGAAGAGGAAATGGATTT+GGG + chr5.4:19785863-19785882 MS.gene35257:CDS 35.0%
! AGGGAAAGGAAATTTGAGAT+GGG - chr5.4:19790105-19790124 None:intergenic 35.0%
! ATGTGTTTGGAATGCATGAA+AGG + chr5.4:19789614-19789633 MS.gene35257:intron 35.0%
! CATTGAGTAATGATGGTGTT+TGG - chr5.4:19787684-19787703 None:intergenic 35.0%
! CTACTACTTCTTTGAAGAGT+AGG - chr5.4:19789049-19789068 None:intergenic 35.0%
! CTCTTTCCTTAGGATTTTGT+GGG + chr5.4:19789114-19789133 MS.gene35257:intron 35.0%
! GGTTTTCTTAGACCTATTAG+AGG + chr5.4:19786175-19786194 MS.gene35257:CDS 35.0%
! TCTCTTTCCTTAGGATTTTG+TGG + chr5.4:19789113-19789132 MS.gene35257:intron 35.0%
! TCTTGAACTAATGGATGTGA+AGG + chr5.4:19786796-19786815 MS.gene35257:CDS 35.0%
! TCTTTCCTTAGGATTTTGTG+GGG + chr5.4:19789115-19789134 MS.gene35257:intron 35.0%
! TGTGTTTGGAATGCATGAAA+GGG + chr5.4:19789615-19789634 MS.gene35257:intron 35.0%
! TTCAATCTCAAGCTTTGATG+AGG + chr5.4:19786350-19786369 MS.gene35257:CDS 35.0%
! TTTTGTGGGGTTCAAACATT+AGG + chr5.4:19789128-19789147 MS.gene35257:intron 35.0%
!! GGTGTTTGAATGTTTGCTAT+AGG + chr5.4:19786755-19786774 MS.gene35257:intron 35.0%
!!! GTTGTTGGTTTTGTATTTGG+AGG - chr5.4:19785815-19785834 None:intergenic 35.0%
AAAGACAAATCTGGTTGTGC+TGG - chr5.4:19785782-19785801 None:intergenic 40.0%
AAAGCTGCCATGGTAAAGAA+AGG - chr5.4:19787736-19787755 None:intergenic 40.0%
AATAGGGAAGCTTGGTTACA+TGG + chr5.4:19789464-19789483 MS.gene35257:intron 40.0%
ACATGTCAAGTCTCACTTAC+AGG + chr5.4:19786832-19786851 MS.gene35257:CDS 40.0%
AGAACAGGTAGAGGAATCAA+AGG - chr5.4:19790169-19790188 None:intergenic 40.0%
AGTTGAGGGAATGATAAAGG+AGG - chr5.4:19786223-19786242 None:intergenic 40.0%
CAAAAGAATTCCCACTTGTC+AGG - chr5.4:19788694-19788713 None:intergenic 40.0%
CAAAGCTTAAGCCAAGAACT+TGG + chr5.4:19786154-19786173 MS.gene35257:CDS 40.0%
CAAGTTCTTGGCTTAAGCTT+TGG - chr5.4:19786156-19786175 None:intergenic 40.0%
CATCAGATTGCCCTATTTCA+TGG - chr5.4:19788199-19788218 None:intergenic 40.0%
CATGCAAGTTCTATAGCACT+TGG + chr5.4:19790062-19790081 MS.gene35257:intron 40.0%
CTCAACTTCACATGCAAACA+TGG + chr5.4:19788854-19788873 MS.gene35257:intron 40.0%
CTCTCATAGCTTAGACACTT+TGG - chr5.4:19790733-19790752 None:intergenic 40.0%
CTCTCTTCCAGTTGTTCAAA+AGG + chr5.4:19788990-19789009 MS.gene35257:intron 40.0%
CTTCACATGCAAACATGGTT+AGG + chr5.4:19788859-19788878 MS.gene35257:intron 40.0%
GAACCATGCAGTGGTTATAT+AGG + chr5.4:19790417-19790436 MS.gene35257:intron 40.0%
GAAGATGGTACGATTCTGAT+TGG + chr5.4:19786957-19786976 MS.gene35257:intron 40.0%
GAATTGAGGTCTAGCACAAA+TGG + chr5.4:19787418-19787437 MS.gene35257:intron 40.0%
GAGAACAACAAACACAGAAG+AGG + chr5.4:19785850-19785869 MS.gene35257:CDS 40.0%
GAGGGAAAGGAAATTTGAGA+TGG - chr5.4:19790106-19790125 None:intergenic 40.0%
GCTCCACACAGCATTTATAT+AGG - chr5.4:19790326-19790345 None:intergenic 40.0%
GTATACGACAATGGATCATC+TGG + chr5.4:19788218-19788237 MS.gene35257:CDS 40.0%
TACTGTACAGCTGTATTTGC+AGG + chr5.4:19788497-19788516 MS.gene35257:intron 40.0%
TCTGAAAACAAGTAGGACAG+AGG + chr5.4:19787260-19787279 MS.gene35257:intron 40.0%
TGAGCATCCAAAATCCATGA+TGG + chr5.4:19788950-19788969 MS.gene35257:intron 40.0%
TGGAAACATGCAATCTCTTG+AGG + chr5.4:19789508-19789527 MS.gene35257:CDS 40.0%
TTGAACCCCACAAAATCCTA+AGG - chr5.4:19789123-19789142 None:intergenic 40.0%
TTGGTTGTAATAGGGAAGCT+TGG + chr5.4:19789456-19789475 MS.gene35257:intron 40.0%
! ACCCTTTCTAAGGAAACCAT+TGG - chr5.4:19787082-19787101 None:intergenic 40.0%
! ATGGTGTTGAAAGAGTGGTT+GGG - chr5.4:19786116-19786135 None:intergenic 40.0%
! ATTAGGTTGCAGAAGAAGCA+GGG - chr5.4:19787158-19787177 None:intergenic 40.0%
! CACAGAAGAGGAAATGGATT+TGG + chr5.4:19785862-19785881 MS.gene35257:CDS 40.0%
! CAGAAGAGGAAATGGATTTG+GGG + chr5.4:19785864-19785883 MS.gene35257:CDS 40.0%
! CTCTCATGCTTCTTTTTGCT+GGG - chr5.4:19786396-19786415 None:intergenic 40.0%
! CTTTAACCATGGTTAGTCAC+AGG + chr5.4:19787752-19787771 MS.gene35257:intron 40.0%
! GGAAGTGATGATGATGAATG+AGG - chr5.4:19786024-19786043 None:intergenic 40.0%
! GGGAAAGGAAATTTGAGATG+GGG - chr5.4:19790104-19790123 None:intergenic 40.0%
! TATTAGGTTGCAGAAGAAGC+AGG - chr5.4:19787159-19787178 None:intergenic 40.0%
! TCATGGATTTTGGATGCTCA+TGG - chr5.4:19788950-19788969 None:intergenic 40.0%
! TGATCTTCCTTGCTGCTTAA+TGG - chr5.4:19788303-19788322 None:intergenic 40.0%
! TTGGATTTGGAATTCACCCT+AGG + chr5.4:19790811-19790830 MS.gene35257:CDS 40.0%
! TTTTGGATGCTCATGGTTTG+TGG - chr5.4:19788943-19788962 None:intergenic 40.0%
!! AGGAAATGGATTTGGGGTTT+TGG + chr5.4:19785870-19785889 MS.gene35257:CDS 40.0%
AACCATGGTTAAAGCTGCCA+TGG - chr5.4:19787746-19787765 None:intergenic 45.0%
AATACACACGCCTGCATGAA+TGG + chr5.4:19789993-19790012 MS.gene35257:intron 45.0%
ATAAATGCTGTGTGGAGCAG+TGG + chr5.4:19790328-19790347 MS.gene35257:intron 45.0%
ATAACCACTGCATGGTTCAG+TGG - chr5.4:19790415-19790434 None:intergenic 45.0%
ATGGCATGGACAGAACTATG+AGG - chr5.4:19787318-19787337 None:intergenic 45.0%
CAAGTTCTATAGCACTTGGC+AGG + chr5.4:19790066-19790085 MS.gene35257:intron 45.0%
GAGGGAATGATAAAGGAGGA+GGG - chr5.4:19786219-19786238 None:intergenic 45.0%
GATAGAGTAGGAGCTTCATC+AGG + chr5.4:19788058-19788077 MS.gene35257:CDS 45.0%
GTTCATGCTGTTGAGCTCTT+AGG + chr5.4:19786457-19786476 MS.gene35257:CDS 45.0%
TCAGTGGCTCGTAGAATCAT+TGG - chr5.4:19790399-19790418 None:intergenic 45.0%
TCTTTGGGCTTGATCCTGAT+AGG - chr5.4:19790783-19790802 None:intergenic 45.0%
TGAGGGAATGATAAAGGAGG+AGG - chr5.4:19786220-19786239 None:intergenic 45.0%
TGAGTGAGTGATCAAGAGAG+AGG - chr5.4:19788838-19788857 None:intergenic 45.0%
! AAAGAAGCATGAGAGCTCCA+AGG + chr5.4:19786401-19786420 MS.gene35257:CDS 45.0%
! ATAGCACTTGGCAGGCTTTT+AGG + chr5.4:19790074-19790093 MS.gene35257:intron 45.0%
! GAGGTAGTTTGTCTTGGCTT+GGG - chr5.4:19787299-19787318 None:intergenic 45.0%
! GATGGTGTTGAAAGAGTGGT+TGG - chr5.4:19786117-19786136 None:intergenic 45.0%
! GCTCTCATGCTTCTTTTTGC+TGG - chr5.4:19786397-19786416 None:intergenic 45.0%
! GTTCTTGGCTTAAGCTTTGG+TGG - chr5.4:19786153-19786172 None:intergenic 45.0%
! TACCATGGCAGCTTTAACCA+TGG + chr5.4:19787741-19787760 MS.gene35257:intron 45.0%
! TGAGGTAGTTTGTCTTGGCT+TGG - chr5.4:19787300-19787319 None:intergenic 45.0%
! TGGTGTTGAAAGAGTGGTTG+GGG - chr5.4:19786115-19786134 None:intergenic 45.0%
! TTTTCACCGTCCGATACATC+TGG - chr5.4:19788033-19788052 None:intergenic 45.0%
!! AAGCTTTGGTGGTGTTGTTG+TGG - chr5.4:19786142-19786161 None:intergenic 45.0%
!! GGAGGAGGGTTTTGATAAAC+AGG - chr5.4:19786205-19786224 None:intergenic 45.0%
!! GGTTGATGGTGTTGAAAGAG+TGG - chr5.4:19786121-19786140 None:intergenic 45.0%
!! GTCTTTGGAGCAACTCTTCT+CGG + chr5.4:19788351-19788370 MS.gene35257:CDS 45.0%
!!! GGGGTTTTGGAAAAGAGCTT+TGG + chr5.4:19785883-19785902 MS.gene35257:CDS 45.0%
!! AAAAAAATAGTATAAAAAAA+AGG - chr5.4:19788412-19788431 None:intergenic 5.0%
!! AAATAAATAAGTAAATAAAA+AGG - chr5.4:19786669-19786688 None:intergenic 5.0%
!!! AAATTTTTATTAAAAATGAT+AGG + chr5.4:19788443-19788462 MS.gene35257:intron 5.0%
!!! AATTATTATTATTTTTTCTA+TGG + chr5.4:19786734-19786753 MS.gene35257:intron 5.0%
!!! ATTATTACTAATTTTATTAA+TGG - chr5.4:19787337-19787356 None:intergenic 5.0%
!!! TTTTATTACAAAAAAAAAAA+TGG - chr5.4:19790649-19790668 None:intergenic 5.0%
CATGCTGTTGAGCTCTTAGG+TGG + chr5.4:19786460-19786479 MS.gene35257:CDS 50.0%
GCTGTATTTGCAGGAACCGT+TGG + chr5.4:19788506-19788525 MS.gene35257:intron 50.0%
GGACTACAAGGGCTTAGCTT+TGG - chr5.4:19789190-19789209 None:intergenic 50.0%
GTAGTAGTCCAACGCATCCT+TGG - chr5.4:19786421-19786440 None:intergenic 50.0%
GTGTTGCAGTTGCAAGTTGC+AGG - chr5.4:19788578-19788597 None:intergenic 50.0%
GTTGCAAGTTGCAGGAACGT+TGG - chr5.4:19788570-19788589 None:intergenic 50.0%
TGGAAGCCTGTGACTAACCA+TGG - chr5.4:19787761-19787780 None:intergenic 50.0%
! GGTGTTGAAAGAGTGGTTGG+GGG - chr5.4:19786114-19786133 None:intergenic 50.0%
!! GGTGGTGTTGTTGTGGTTGA+TGG - chr5.4:19786135-19786154 None:intergenic 50.0%
GTTGCAGAAGAAGCAGGGAG+AGG - chr5.4:19787153-19787172 None:intergenic 55.0%
TGAGAGCTCCAAGGATGCGT+TGG + chr5.4:19786410-19786429 MS.gene35257:CDS 55.0%
CGAGCCACTGAACCATGCAG+TGG + chr5.4:19790408-19790427 MS.gene35257:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 19785767 19790846 19785767 ID=MS.gene35257
chr5.4 mRNA 19785767 19790846 19785767 ID=MS.gene35257.t1;Parent=MS.gene35257
chr5.4 exon 19785767 19786490 19785767 ID=MS.gene35257.t1.exon1;Parent=MS.gene35257.t1
chr5.4 CDS 19785767 19786490 19785767 ID=cds.MS.gene35257.t1;Parent=MS.gene35257.t1
chr5.4 exon 19786777 19786853 19786777 ID=MS.gene35257.t1.exon2;Parent=MS.gene35257.t1
chr5.4 CDS 19786777 19786853 19786777 ID=cds.MS.gene35257.t1;Parent=MS.gene35257.t1
chr5.4 exon 19788034 19788079 19788034 ID=MS.gene35257.t1.exon3;Parent=MS.gene35257.t1
chr5.4 CDS 19788034 19788079 19788034 ID=cds.MS.gene35257.t1;Parent=MS.gene35257.t1
chr5.4 exon 19788207 19788372 19788207 ID=MS.gene35257.t1.exon4;Parent=MS.gene35257.t1
chr5.4 CDS 19788207 19788372 19788207 ID=cds.MS.gene35257.t1;Parent=MS.gene35257.t1
chr5.4 exon 19789469 19789529 19789469 ID=MS.gene35257.t1.exon5;Parent=MS.gene35257.t1
chr5.4 CDS 19789469 19789529 19789469 ID=cds.MS.gene35257.t1;Parent=MS.gene35257.t1
chr5.4 exon 19790718 19790846 19790718 ID=MS.gene35257.t1.exon6;Parent=MS.gene35257.t1
chr5.4 CDS 19790718 19790846 19790718 ID=cds.MS.gene35257.t1;Parent=MS.gene35257.t1
Gene Sequence

>MS.gene35257

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACAAAACCAACAACAACAAGTAATTGGAAGAGAACAACAAACACAGAAGAGGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACAACACTTCAAATAACCTCATTCATCATCATCACTTCCAAAATAGTGGAAATAATAATGCAAACAACCCTTATCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTGCTACTACTACACCTTCTACTATTTCTAACAACAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTCCCAGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGTATGCTTCATCTTCAATTTCCACTTTCTTAAAAATATATTTCTTTTTGGTTAATTTTCCTTAATCCTCCTTTTTATTCTAGCTTAATTACACCCTTGTTTTAATTTTCTTTAACATGAAAATTTAACAAGACAATTAGAAGAAAAAAGGGTGTGAAACTTAGAAAGAGAATTTTCCTTTTTATTTACTTATTTATTTATTTTTAATTTGACTATGATATAAATTTGATTTTTTTTCTTAACTAATTATTATTATTTTTTCTATGGTGTTTGAATGTTTGCTATAGGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGGTAACCTTAAACTCTAATTTGTCTTAATTGCATTTTGTTTATAAATAAATAATCTATCTTGCTATTAAATAATTTTTTCATTGTTAAATTCTTTAGTCAGATTGAAGATGGTACGATTCTGATTGGGATTTAATGATGTTTAAATTTATATGCTACATTATTATTATTATTTATATACTTATACATTAGAGGAAGCAATTAAGTAATGAATATTAATTTCAAATTCCAATGGTTTCCTTAGAAAGGGTTTCTCTCAATCAAATACTTTGTGCTTCTTTTTTCTATTAGATCTGCTGCCTCTCCCTGCTTCTTCTGCAACCTAATAAACAGCTTTTTACTTTGAAGAATGAACCATCCAACTTAAAAGAATATAAAATCTAGAAAGAGAAAGAAGTACTTATCGATTTCTGAAAACAAGTAGGACAGAGGCTTATGAATCTCACCCAAGCCAAGACAAACTACCTCATAGTTCTGTCCATGCCATTAATAAAATTAGTAATAATATACTTATTTATTTTTCTTGTAAGAAATTATATTAGTACCAAGTACCAAAAAAATATATTCGAATTGAGGTCTAGCACAAATGGCTAAAATGGAGTGTACGAATGTTATAAACAAATAAGATATCGAGTTTAATTTCTACCGATAAAAAAAAAAAAAAAATTAGACCTTAAAGTTTAAACCTTTGACTTCTTTCTCAAATTCTTTAGGATGTCTCACTTAAGACAATAGAAATATGCATATATCAATATAATTAAATTGAAGTAAAAAATAAAAAAAAAAATAAAAAACAAAACAAAACAAAATGATAGGTTAGCATGCATGTACCAAACACCATCATTACTCAATGATCTCTTCATGCAATATGACCTTTTTTTTCCTTTCTTTACCATGGCAGCTTTAACCATGGTTAGTCACAGGCTTCCATGCATATGCATATTATAAAACCATAACCATAAATGCTTCTGTATTAGATCTTGTACTCTACTGCATATATCAATTTAATACTTGCAAGTAACAACTTTACTTAGAGGACATTAATTTCTTATTCTTGCTGCAAACTTCTTTAATTTGTTTCATTTGTTACTAATAATATGATTTAATTTTGGAAGCATATTTTTTTTTATAAAAATTTACTTTATTCTAGCTAATGTTTATGATATGTTAATTTTAAATCCAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGTTAGTTCAAATTTTCATTCTATCATATATTAATTGTTGGAAGATTAATGAAGACTATTATGTTAATAGATAATTAACTTGCTCTTCTTTTTTCTTTTTCTTTTTTCTCCCTTAAACCATGAAATAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCATTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGTAATGCTTCTAAATCTAGTTAATTGTACCTATAATCCTTTTTTTTATACTATTTTTTTTAACAACAAAGAAATTTTTATTAAAAATGATAGGAATAAGTACAATAAATTTTTCATTAGATAGATACTGTACAGCTGTATTTGCAGGAACCGTTGGATTTTGAGAGAGTATAATCTTAATTTATCTCTCTGAATCCAACGTTCCTGCAACTTGCAACTGCAACACCATATTGCAACTATATCTCGTTCGTCTCCAAAGCCTAACGATGTTGTTTTAAATGATTAATATTGAAAAATCATAGACACATATTTATACTCACCTGACAAGTGGGAATTCTTTTGTCATGTTTTTTAAAATATTTATATTTTGTACTATGTTTTTGCAAGTCATGCATATACTAATATAAATAAAACGATTGCATGCATGTCTTATTCATAGACACATTTCTTTGTTCTTTTCTTTCCTCTCTCTTGATCACTCACTCAACTTCACATGCAAACATGGTTAGGCTCAAAAATTCACAAAAAAGAATAAATCATTTCATTAGTTTGCTTTGTTTATGTCTGTCCACAAACCATGAGCATCCAAAATCCATGATGGTGTAATAATAATATATACTCTCTTCCAGTTGTTCAAAAGGAAGTAAAAAAAGTTACACACACACACACACTCTCCTACTCTTCAAAGAAGTAGTAGTATTTTGTTATTTTCCAAAAATCTTCCTTAAAAAAATAGAGATATCTCTTTCCTTAGGATTTTGTGGGGTTCAAACATTAGGCTCTTGTATGGGGCCCAACAAATGAGAAACTTAGTGCCAAAGCTAAGCCCTTGTAGTCCCATAATTAGAAATCTTGAAACCAAAGCAAATATTCCCTTTGAAACTTCCATGAATGCTCCTATATTATATATAGTCATAGAATAAATGGAATATATATGATATCAATTAGAATAGCATAAACTTTATTCCAATCTTTAGAATAAGTAAAAGGCATATAAGTAAGATGGTAAAAAGATGAATTTCTTTCCTTAAGTTTTGCTTTTCTTTTTCATGGCTTCAAGTAATGAGAAATATTCTCTCTGTGTTTGGTTGTAATAGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGGTAATATATTCCCCCTTTATATTCCAAAGGTTAAGCCTTTTGTTTTGAAAAAGTTATTAAAATTATATACACAAATTTCAAAGCATGTGTTTGGAATGCATGAAAGGGATTTTTTAGAAGAAAAGGAAATACGTTTGATCTTTTTCATATTGCCATGCACATTATTATGGAGATGAATGAGAAAAAAGAAAGAAAAAAAAGGCTTTGCATAAAGCTGCTTTGTCCTTCACAAATTCAAATGGTTAGACTAGTCCTTTTCACATTTACCAATTACAAAAGGTTAAAAACGATTTGTGATGTAAAAAAGGTTCCTCTAGTTAAGAGTTATTAATTGACCATATTGAAAATGACTATATAATAGAACCCCCTATTAAACCTGCTTCATTTGACTCAATTATCAATGGTCTAGACCATACTATATGATAATTTATATAGTTGAGTCAAATTAATAAATAAATTAATAAATACACACGCCTGCATGAATGGTATAATGTTTTATATACACAAATAATTGGAAGCTATAGCACATGAACATGCAAGTTCTATAGCACTTGGCAGGCTTTTAGGTGTGCCCCATCTCAAATTTCCTTTCCCTCATTCATATAAATATTCTTTAATTATTTCTGAGTCAAATGTCCTTTGATTCCTCTACCTGTTCTCTAATACTATATACTCCCTTTCATACTCACAGTAATTTATTTTCCTCTTTTAGCCCTTTAATCATATTCTCATCATAACACAATATTTTTTCTAAGAAGTCATTGCCTTTTACTATGAGTAATGAGAGTTAAATCCTATATAAATGCTGTGTGGAGCAGTGGAAAGTAGAGTCATTTGATTTAGAGAACTTTATTATCTTTTTAAATCCAATGATTCTACGAGCCACTGAACCATGCAGTGGTTATATAGGAATCAAATGTACGAGTTGTTGCCGTTTCTTTTGAATCGTATTTTTTGAAATTAGTTCCTATTCGACAACACATTGAATTTAGATATCATTTATCTTTCTTATATGTAGCTTTTTGTTCATGATATGTCAGTTCAATGATAAGAATTTGATTTTGTAATTTTAATGGTCGTTAGTGTCACATTAATTAAAAACAATTTCACCCTTTTCCATTTTTTTTTTTGTAATAAAATAATTTATTCTGATCTTTGATACTAATTTATTGTTATTTGCTTTTTCAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA
Protein sequence

>MS.gene35257.t1

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTNTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKPLDSNNNTSNNLIHHHHFQNSGNNNANNPYQSFHQNHYFQHPQPLFQHHQPQQHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNHNLNHLHILDGATTTPSTISNNNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL