AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35296

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35296.t1 MTR_2g084280 97.115 312 7 2 3 314 4 313 0.0 615
MS.gene35296.t1 MTR_4g057270 63.914 327 95 9 2 314 16 333 3.76e-131 377
MS.gene35296.t1 MTR_8g064700 34.591 159 83 3 126 270 236 387 2.88e-20 90.9
MS.gene35296.t1 MTR_1g112680 29.362 235 128 7 63 259 239 473 2.98e-19 88.6
MS.gene35296.t1 MTR_3g104100 32.292 192 109 4 133 310 194 378 1.37e-18 85.9
MS.gene35296.t1 MTR_3g498695 30.645 186 108 4 89 259 257 436 2.97e-17 82.4
MS.gene35296.t1 MTR_3g498695 30.645 186 108 4 89 259 257 436 3.07e-17 82.4
MS.gene35296.t1 MTR_3g030700 29.744 195 116 4 123 303 185 372 9.90e-17 80.1
MS.gene35296.t1 MTR_2g038040 26.203 187 117 3 133 301 51 234 1.99e-16 77.8
MS.gene35296.t1 MTR_2g081040 31.351 185 111 6 133 303 176 358 2.76e-15 75.9
MS.gene35296.t1 MTR_8g067280 30.864 162 93 5 138 283 466 624 9.84e-15 75.1
MS.gene35296.t1 MTR_4g091910 31.548 168 108 4 122 288 37 198 1.46e-14 71.6
MS.gene35296.t1 MTR_8g027495 29.605 152 97 4 138 287 462 605 2.15e-14 73.9
MS.gene35296.t1 MTR_5g030430 30.488 164 91 5 138 283 497 655 4.88e-14 73.2
MS.gene35296.t1 MTR_4g097950 30.058 173 94 4 98 258 47 204 4.99e-14 70.9
MS.gene35296.t1 MTR_7g083900 28.859 149 90 2 133 266 285 432 1.22e-13 71.6
MS.gene35296.t1 MTR_7g083900 28.859 149 90 2 133 266 285 432 1.26e-13 71.6
MS.gene35296.t1 MTR_7g117670 29.801 151 98 4 138 287 406 549 1.61e-13 71.2
MS.gene35296.t1 MTR_4g092700 26.404 178 124 5 97 270 122 296 6.12e-12 65.9
MS.gene35296.t1 MTR_8g024770 33.708 89 54 1 138 221 283 371 1.15e-11 65.5
MS.gene35296.t1 MTR_8g024790 28.421 190 98 9 113 276 259 436 2.68e-11 64.3
MS.gene35296.t1 MTR_1g019240 32.143 112 64 3 79 186 44 147 2.69e-11 63.2
MS.gene35296.t1 MTR_7g096350 48.077 52 27 0 138 189 359 410 3.25e-11 64.3
MS.gene35296.t1 MTR_4g091990 32.407 108 69 1 133 240 44 147 9.88e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35296.t1 AT2G28160 52.252 333 120 10 1 314 5 317 6.61e-104 306
MS.gene35296.t1 AT2G28160 51.682 327 119 10 1 308 5 311 9.22e-100 296
MS.gene35296.t1 AT4G29930 34.682 173 108 3 133 305 53 220 3.05e-24 98.6
MS.gene35296.t1 AT4G29930 34.682 173 105 4 133 305 53 217 4.28e-23 95.5
MS.gene35296.t1 AT5G57150 33.333 192 107 6 122 297 40 226 8.69e-23 95.1
MS.gene35296.t1 AT5G57150 34.078 179 99 5 122 284 41 216 2.71e-22 93.6
MS.gene35296.t1 AT4G29930 35.099 151 92 3 133 283 53 197 3.23e-22 93.6
MS.gene35296.t1 AT5G57150 35.758 165 87 5 122 270 40 201 4.08e-22 92.8
MS.gene35296.t1 AT5G57150 35.758 165 87 5 122 270 41 202 4.65e-22 92.8
MS.gene35296.t1 AT5G57150 35.758 165 87 5 122 270 41 202 1.49e-21 92.4
MS.gene35296.t1 AT2G16910 36.025 161 77 4 132 267 312 471 3.78e-21 94.4
MS.gene35296.t1 AT4G29930 31.156 199 106 5 133 305 53 246 4.58e-20 88.2
MS.gene35296.t1 AT4G29930 31.073 177 93 4 133 283 53 226 5.15e-19 85.5
MS.gene35296.t1 AT4G29930 31.073 177 93 4 133 283 53 226 5.15e-19 85.5
MS.gene35296.t1 AT2G46510 30.726 179 99 6 119 288 372 534 1.05e-17 84.0
MS.gene35296.t1 AT1G01260 33.155 187 103 4 95 281 396 560 1.37e-16 80.5
MS.gene35296.t1 AT1G01260 33.155 187 103 4 95 281 396 560 1.37e-16 80.5
MS.gene35296.t1 AT1G01260 33.155 187 103 4 95 281 396 560 1.37e-16 80.5
MS.gene35296.t1 AT4G29930 47.143 70 37 0 133 202 53 122 1.60e-15 73.9
MS.gene35296.t1 AT4G17880 28.188 149 103 3 138 283 420 567 1.96e-14 74.3
MS.gene35296.t1 AT1G12860 29.932 147 85 4 133 266 266 407 1.63e-13 71.2
MS.gene35296.t1 AT1G12860 29.932 147 85 4 133 266 266 407 2.04e-13 70.9
MS.gene35296.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.60e-13 70.5
MS.gene35296.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.60e-13 70.5
MS.gene35296.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.60e-13 70.5
MS.gene35296.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.62e-13 70.5
MS.gene35296.t1 AT1G32640 30.000 150 100 4 138 283 456 604 2.17e-12 68.2
MS.gene35296.t1 AT5G46760 29.091 165 85 6 138 283 419 570 8.17e-12 66.2
MS.gene35296.t1 AT2G22750 26.582 158 105 3 127 275 119 274 2.65e-11 63.9
MS.gene35296.t1 AT2G22750 26.582 158 105 3 127 275 143 298 2.67e-11 63.9
MS.gene35296.t1 AT2G22750 26.582 158 105 3 127 275 147 302 2.77e-11 63.9
MS.gene35296.t1 AT2G22750 26.582 158 105 3 127 275 119 274 2.90e-11 63.5
MS.gene35296.t1 AT2G22750 26.582 158 105 3 127 275 147 302 3.02e-11 63.9
MS.gene35296.t1 AT4G37850 23.718 312 181 13 18 305 48 326 6.35e-11 62.8
MS.gene35296.t1 AT4G37850 23.718 312 181 13 18 305 48 326 6.35e-11 62.8
MS.gene35296.t1 AT1G10610 45.161 62 34 0 132 193 165 226 6.66e-11 62.8
MS.gene35296.t1 AT1G10610 45.161 62 34 0 132 193 232 293 8.86e-11 62.8

Find 60 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTGAATGCTGAGGTTTC+TGG 0.189821 2.1:-17318543 MS.gene35296:CDS
TGTTATGATGGAGAGGTTAA+AGG 0.231584 2.1:-17318969 MS.gene35296:CDS
TATTGTTGTGATCAAATAAT+AGG 0.246719 2.1:+17319060 None:intergenic
GCTTTATGCATTGCGTTCTT+TGG 0.304101 2.1:-17318799 MS.gene35296:CDS
ATGGATAAGGCCTCTATAAT+TGG 0.313859 2.1:-17318609 MS.gene35296:CDS
TCGATAAATTGATCAAAGTT+TGG 0.327610 2.1:+17319191 None:intergenic
GTCATGCAGCTCAAAGTTAT+TGG 0.328211 2.1:+17319226 None:intergenic
CTAATTACCTTTGTAATGTT+GGG 0.360034 2.1:+17318774 None:intergenic
ACTAATTACCTTTGTAATGT+TGG 0.365158 2.1:+17318773 None:intergenic
ACTTCCTAGCTTGTGCTTGA+AGG 0.382012 2.1:+17318562 None:intergenic
ACCTTCAAAATTTGAAGCTA+TGG 0.386796 2.1:-17317786 MS.gene35296:CDS
GGCTCCTTCTCTTGTTATGA+TGG 0.389333 2.1:-17318981 MS.gene35296:CDS
GAGCCAATTGTTGTAGGGCT+TGG 0.390918 2.1:+17318999 None:intergenic
CAATGTTCAAAATTCAAACT+TGG 0.395586 2.1:-17317979 MS.gene35296:CDS
TTGTGATCAAATAATAGGTT+TGG 0.409993 2.1:+17319065 None:intergenic
TTGGAGGATTTGAAAGAAGT+TGG 0.416915 2.1:+17319084 None:intergenic
CAATTTATCGATTTAATTCG+AGG 0.430612 2.1:-17319179 MS.gene35296:CDS
AATCCAAGCCCTACAACAAT+TGG 0.433423 2.1:-17319002 MS.gene35296:CDS
GAGGAGGAGAGGCAGGATGA+AGG 0.445153 2.1:-17318826 MS.gene35296:CDS
CTGAGAGGAGGAGGAGAGGC+AGG 0.453081 2.1:-17318833 MS.gene35296:CDS
GAGAAGGAGCCAATTGTTGT+AGG 0.453789 2.1:+17318993 None:intergenic
GAAGATGCAATATCTAACTT+TGG 0.471684 2.1:-17319149 MS.gene35296:CDS
CCTTCAAAATTTGAAGCTAT+GGG 0.474141 2.1:-17317785 MS.gene35296:CDS
CCTCTCAGAAATGAGAGTCT+TGG 0.475407 2.1:+17318848 None:intergenic
CTCTCATTTCTGAGAGGAGG+AGG 0.478718 2.1:-17318842 MS.gene35296:CDS
TGATCAAATAATAGGTTTGG+AGG 0.479849 2.1:+17319068 None:intergenic
AATTTGCAAGAAAATTATCC+AGG 0.484959 2.1:-17318445 MS.gene35296:intron
TCAGTGTCTGAAAATTATCA+AGG 0.485823 2.1:-17318504 MS.gene35296:CDS
GATGGAGAGGTTAAAGGAGA+AGG 0.491246 2.1:-17318963 MS.gene35296:CDS
CAATGAAGCAATCATTGATA+AGG 0.492027 2.1:+17319120 None:intergenic
CTTCTCTTGTTATGATGGAG+AGG 0.500496 2.1:-17318976 MS.gene35296:CDS
ATGGCATGAATTCAAAGCCT+TGG 0.500719 2.1:+17317743 None:intergenic
CATGCAGTGGCTCAAAATGA+TGG 0.501968 2.1:+17317724 None:intergenic
TACTGCATCTCCAATTATAG+AGG 0.518020 2.1:+17318599 None:intergenic
AATAACCTCTTTCCTCCACT+TGG 0.518798 2.1:+17318078 None:intergenic
TATCCACGTACAGATGGATA+AGG 0.530307 2.1:-17318622 MS.gene35296:intron
AGAAGGAGCCAATTGTTGTA+GGG 0.535853 2.1:+17318994 None:intergenic
AAAGGAGAAGGAGAAAATGA+TGG 0.542463 2.1:-17318951 MS.gene35296:CDS
GAAGGAGAAAATGATGGAGG+TGG 0.543991 2.1:-17318945 MS.gene35296:CDS
CTCTCCATCATAACAAGAGA+AGG 0.545524 2.1:+17318977 None:intergenic
CAATCGATGATGCTAACCCT+AGG 0.549718 2.1:-17318887 MS.gene35296:CDS
ACCCTAGGGCTAAAACTGAT+AGG 0.553134 2.1:-17318872 MS.gene35296:CDS
AATTTGAAGCTATGGGTGGC+TGG 0.562736 2.1:-17317778 MS.gene35296:CDS
GGTGTTCTCTAGTGAGTCCA+TGG 0.563816 2.1:+17319247 None:intergenic
ATGACCTTCAAGCACAAGCT+AGG 0.564350 2.1:-17318566 MS.gene35296:CDS
ATTTCTGAGAGGAGGAGGAG+AGG 0.573269 2.1:-17318837 MS.gene35296:CDS
AGTAGCTGCTTCATTGTACA+AGG 0.575970 2.1:-17318024 MS.gene35296:CDS
ATGTTCCAAGTGGAGGAAAG+AGG 0.591850 2.1:-17318083 MS.gene35296:CDS
TTTGGTTCCCAACATTACAA+AGG 0.593392 2.1:-17318781 MS.gene35296:intron
AGACTCTCATTTCTGAGAGG+AGG 0.604951 2.1:-17318845 MS.gene35296:CDS
GGAGAAGGAGAAAATGATGG+AGG 0.607003 2.1:-17318948 MS.gene35296:CDS
AGCTAGGAAGTTGAATGCTG+AGG 0.609235 2.1:-17318550 MS.gene35296:CDS
TCAAAATTTGAAGCTATGGG+TGG 0.609799 2.1:-17317782 MS.gene35296:CDS
ATATTGTGCAATAAAGGAGA+AGG 0.612090 2.1:-17318047 MS.gene35296:CDS
AGGGTTAGCATCATCGATTG+TGG 0.612799 2.1:+17318890 None:intergenic
GGTGGACATGTTCCAAGTGG+AGG 0.635415 2.1:-17318090 MS.gene35296:CDS
AATCGATGATGCTAACCCTA+GGG 0.641884 2.1:-17318886 MS.gene35296:CDS
CCAAGACTCTCATTTCTGAG+AGG 0.669057 2.1:-17318848 MS.gene35296:CDS
GATTGTGGTTGTCGTCGTCG+TGG 0.675499 2.1:+17318905 None:intergenic
GTAGGTGGACATGTTCCAAG+TGG 0.684360 2.1:-17318093 MS.gene35296:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGCTTAATATTAATTTG+AGG - chr2.1:17318297-17318316 MS.gene35296:intron 15.0%
!!! CAAAGATATAATTTTTGTTA+GGG - chr2.1:17318249-17318268 MS.gene35296:intron 15.0%
!! AATGAAAAATTAATCAAACC+TGG + chr2.1:17318556-17318575 None:intergenic 20.0%
!! AGCATTAATCAATGAATTAA+TGG + chr2.1:17319089-17319108 None:intergenic 20.0%
!! ATTGTTGTGTTGAAAAATAT+AGG - chr2.1:17319147-17319166 MS.gene35296:CDS 20.0%
!! TATTGTTGTGATCAAATAAT+AGG + chr2.1:17317923-17317942 None:intergenic 20.0%
!! TGTTGAAAAATATAGGTAAA+CGG - chr2.1:17319154-17319173 MS.gene35296:CDS 20.0%
!!! AATTCATTGATTAATGCTTA+GGG - chr2.1:17319091-17319110 MS.gene35296:CDS 20.0%
!!! GCAAAGATATAATTTTTGTT+AGG - chr2.1:17318248-17318267 MS.gene35296:intron 20.0%
!!! TAATTCATTGATTAATGCTT+AGG - chr2.1:17319090-17319109 MS.gene35296:CDS 20.0%
! AAGATAGAAAACTACAAACA+AGG - chr2.1:17318755-17318774 MS.gene35296:intron 25.0%
! AATCAATGAATTAATGGAAG+AGG + chr2.1:17319083-17319102 None:intergenic 25.0%
! AATTTGCAAGAAAATTATCC+AGG - chr2.1:17318535-17318554 MS.gene35296:CDS 25.0%
! ACTAATTACCTTTGTAATGT+TGG + chr2.1:17318210-17318229 None:intergenic 25.0%
! AGATAGAAAACTACAAACAA+GGG - chr2.1:17318756-17318775 MS.gene35296:intron 25.0%
! ATCAATGAATTAATGGAAGA+GGG + chr2.1:17319082-17319101 None:intergenic 25.0%
! CAATGTTCAAAATTCAAACT+TGG - chr2.1:17319001-17319020 MS.gene35296:CDS 25.0%
! CTAATTACCTTTGTAATGTT+GGG + chr2.1:17318209-17318228 None:intergenic 25.0%
! GCAAAAATATTGTGCAATAA+AGG - chr2.1:17318927-17318946 MS.gene35296:CDS 25.0%
! TCGATAAATTGATCAAAGTT+TGG + chr2.1:17317792-17317811 None:intergenic 25.0%
! TCTTTGCAACTAATTGAAAA+AGG + chr2.1:17318235-17318254 None:intergenic 25.0%
! TGCTGTTAAAGAAAAAATGT+TGG + chr2.1:17318689-17318708 None:intergenic 25.0%
! TTAGACAAACACTTTATAGT+TGG - chr2.1:17318812-17318831 MS.gene35296:CDS 25.0%
! TTGTGATCAAATAATAGGTT+TGG + chr2.1:17317918-17317937 None:intergenic 25.0%
!! AAAAATGTTGGTCTAAGATA+AGG + chr2.1:17318677-17318696 None:intergenic 25.0%
!! TAATTTTCTTGCAAATTGGA+TGG + chr2.1:17318532-17318551 None:intergenic 25.0%
!! TGGATAATTTTCTTGCAAAT+TGG + chr2.1:17318536-17318555 None:intergenic 25.0%
!!! AAATTTTGAAGGTTCATTTC+TGG + chr2.1:17319187-17319206 None:intergenic 25.0%
!!! CAATTTATCGATTTAATTCG+AGG - chr2.1:17317801-17317820 MS.gene35296:CDS 25.0%
AGACTCGTGAAATTATAACT+TGG + chr2.1:17318607-17318626 None:intergenic 30.0%
ATATTGTGCAATAAAGGAGA+AGG - chr2.1:17318933-17318952 MS.gene35296:CDS 30.0%
CAATGAAGCAATCATTGATA+AGG + chr2.1:17317863-17317882 None:intergenic 30.0%
GAAGATGCAATATCTAACTT+TGG - chr2.1:17317831-17317850 MS.gene35296:intron 30.0%
GATAGAAAACTACAAACAAG+GGG - chr2.1:17318757-17318776 MS.gene35296:intron 30.0%
GTTATTGATGTCTTTGCTTA+AGG - chr2.1:17319113-17319132 MS.gene35296:CDS 30.0%
TCAGTGTCTGAAAATTATCA+AGG - chr2.1:17318476-17318495 MS.gene35296:CDS 30.0%
TGATCAAATAATAGGTTTGG+AGG + chr2.1:17317915-17317934 None:intergenic 30.0%
TGTTGTGCATTATGATATGT+AGG - chr2.1:17318869-17318888 MS.gene35296:CDS 30.0%
TTTATATATCCACGTACAGA+TGG - chr2.1:17318352-17318371 MS.gene35296:intron 30.0%
! ACCTTCAAAATTTGAAGCTA+TGG - chr2.1:17319194-17319213 MS.gene35296:CDS 30.0%
! CCTTCAAAATTTGAAGCTAT+GGG - chr2.1:17319195-17319214 MS.gene35296:CDS 30.0%
AAAGGAGAAGGAGAAAATGA+TGG - chr2.1:17318029-17318048 MS.gene35296:CDS 35.0%
ATGGATAAGGCCTCTATAAT+TGG - chr2.1:17318371-17318390 MS.gene35296:intron 35.0%
TACTGCATCTCCAATTATAG+AGG + chr2.1:17318384-17318403 None:intergenic 35.0%
TGTGCATTATGATATGTAGG+TGG - chr2.1:17318872-17318891 MS.gene35296:CDS 35.0%
TTGGAGGATTTGAAAGAAGT+TGG + chr2.1:17317899-17317918 None:intergenic 35.0%
! CCCATAGCTTCAAATTTTGA+AGG + chr2.1:17319198-17319217 None:intergenic 35.0%
! TCAAAATTTGAAGCTATGGG+TGG - chr2.1:17319198-17319217 MS.gene35296:CDS 35.0%
! TGTTATGATGGAGAGGTTAA+AGG - chr2.1:17318011-17318030 MS.gene35296:CDS 35.0%
! TTTGGTTCCCAACATTACAA+AGG - chr2.1:17318199-17318218 MS.gene35296:intron 35.0%
AAGTTGAATGCTGAGGTTTC+TGG - chr2.1:17318437-17318456 MS.gene35296:intron 40.0%
AATAACCTCTTTCCTCCACT+TGG + chr2.1:17318905-17318924 None:intergenic 40.0%
AATCCAAGCCCTACAACAAT+TGG - chr2.1:17317978-17317997 MS.gene35296:CDS 40.0%
AATCGATGATGCTAACCCTA+GGG - chr2.1:17318094-17318113 MS.gene35296:intron 40.0%
AGAAGGAGCCAATTGTTGTA+GGG + chr2.1:17317989-17318008 None:intergenic 40.0%
AGTAGCTGCTTCATTGTACA+AGG - chr2.1:17318956-17318975 MS.gene35296:CDS 40.0%
ATGGCATGAATTCAAAGCCT+TGG + chr2.1:17319240-17319259 None:intergenic 40.0%
CTCTCCATCATAACAAGAGA+AGG + chr2.1:17318006-17318025 None:intergenic 40.0%
GCTTTATGCATTGCGTTCTT+TGG - chr2.1:17318181-17318200 MS.gene35296:intron 40.0%
GTCATGCAGCTCAAAGTTAT+TGG + chr2.1:17317757-17317776 None:intergenic 40.0%
TATCCACGTACAGATGGATA+AGG - chr2.1:17318358-17318377 MS.gene35296:intron 40.0%
! CTTCTCTTGTTATGATGGAG+AGG - chr2.1:17318004-17318023 MS.gene35296:CDS 40.0%
!! AAACAAGGGGCATCAGATAT+AGG - chr2.1:17318770-17318789 MS.gene35296:intron 40.0%
!! ACCTATCAGTTTTAGCCCTA+GGG + chr2.1:17318112-17318131 None:intergenic 40.0%
ACCCTAGGGCTAAAACTGAT+AGG - chr2.1:17318108-17318127 MS.gene35296:intron 45.0%
AGCTAGGAAGTTGAATGCTG+AGG - chr2.1:17318430-17318449 MS.gene35296:intron 45.0%
ATGACCTTCAAGCACAAGCT+AGG - chr2.1:17318414-17318433 MS.gene35296:intron 45.0%
ATGTTCCAAGTGGAGGAAAG+AGG - chr2.1:17318897-17318916 MS.gene35296:CDS 45.0%
CAATCGATGATGCTAACCCT+AGG - chr2.1:17318093-17318112 MS.gene35296:intron 45.0%
CCAAGACTCTCATTTCTGAG+AGG - chr2.1:17318132-17318151 MS.gene35296:intron 45.0%
CCTCTCAGAAATGAGAGTCT+TGG + chr2.1:17318135-17318154 None:intergenic 45.0%
GAGAAGGAGCCAATTGTTGT+AGG + chr2.1:17317990-17318009 None:intergenic 45.0%
GATGGAGAGGTTAAAGGAGA+AGG - chr2.1:17318017-17318036 MS.gene35296:CDS 45.0%
GGAGAAGGAGAAAATGATGG+AGG - chr2.1:17318032-17318051 MS.gene35296:CDS 45.0%
TGTTCGTCTTGTGCATAGAC+TGG + chr2.1:17318726-17318745 None:intergenic 45.0%
! AATTTGAAGCTATGGGTGGC+TGG - chr2.1:17319202-17319221 MS.gene35296:CDS 45.0%
! ACTTCCTAGCTTGTGCTTGA+AGG + chr2.1:17318421-17318440 None:intergenic 45.0%
! AGACTCTCATTTCTGAGAGG+AGG - chr2.1:17318135-17318154 MS.gene35296:intron 45.0%
! AGGGTTAGCATCATCGATTG+TGG + chr2.1:17318093-17318112 None:intergenic 45.0%
! GAAGGAGAAAATGATGGAGG+TGG - chr2.1:17318035-17318054 MS.gene35296:CDS 45.0%
! GGCTCCTTCTCTTGTTATGA+TGG - chr2.1:17317999-17318018 MS.gene35296:CDS 45.0%
!! GACCTATCAGTTTTAGCCCT+AGG + chr2.1:17318113-17318132 None:intergenic 45.0%
GAGCCAATTGTTGTAGGGCT+TGG + chr2.1:17317984-17318003 None:intergenic 50.0%
GTAGGTGGACATGTTCCAAG+TGG - chr2.1:17318887-17318906 MS.gene35296:CDS 50.0%
! AGGCCTTATCCATCTGTACG+TGG + chr2.1:17318364-17318383 None:intergenic 50.0%
! ATTTCTGAGAGGAGGAGGAG+AGG - chr2.1:17318143-17318162 MS.gene35296:intron 50.0%
! CTCTCATTTCTGAGAGGAGG+AGG - chr2.1:17318138-17318157 MS.gene35296:intron 50.0%
! GCTGGTGCTCTTTTGAACCA+AGG - chr2.1:17319220-17319239 MS.gene35296:CDS 50.0%
GATTGTGGTTGTCGTCGTCG+TGG + chr2.1:17318078-17318097 None:intergenic 55.0%
GGTGGACATGTTCCAAGTGG+AGG - chr2.1:17318890-17318909 MS.gene35296:CDS 55.0%
GAGGAGGAGAGGCAGGATGA+AGG - chr2.1:17318154-17318173 MS.gene35296:intron 60.0%
CTGAGAGGAGGAGGAGAGGC+AGG - chr2.1:17318147-17318166 MS.gene35296:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 17317735 17319267 17317735 ID=MS.gene35296
chr2.1 mRNA 17317735 17319267 17317735 ID=MS.gene35296.t1;Parent=MS.gene35296
chr2.1 exon 17318782 17319267 17318782 ID=MS.gene35296.t1.exon1;Parent=MS.gene35296.t1
chr2.1 CDS 17318782 17319267 17318782 ID=cds.MS.gene35296.t1;Parent=MS.gene35296.t1
chr2.1 exon 17318446 17318631 17318446 ID=MS.gene35296.t1.exon2;Parent=MS.gene35296.t1
chr2.1 CDS 17318446 17318631 17318446 ID=cds.MS.gene35296.t1;Parent=MS.gene35296.t1
chr2.1 exon 17317938 17318111 17317938 ID=MS.gene35296.t1.exon3;Parent=MS.gene35296.t1
chr2.1 CDS 17317938 17318111 17317938 ID=cds.MS.gene35296.t1;Parent=MS.gene35296.t1
chr2.1 exon 17317735 17317833 17317735 ID=MS.gene35296.t1.exon4;Parent=MS.gene35296.t1
chr2.1 CDS 17317735 17317833 17317735 ID=cds.MS.gene35296.t1;Parent=MS.gene35296.t1
Gene Sequence

>MS.gene35296

ATGGACTCACTAGAGAACACCAATAACTTTGAGCTGCATGACTTCATTGACGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGCATGAAGATGCAATATCTAACTTTGGCTCTGACCTTATCAATGATTGCTTCATTGATAATAATATTAACCAACTTCTTTCAAATCCTCCAAACCTATTATTTGATCACAACAATAACAATATTATTAATAATAATGTTGTCAATGAGTATAATCCAAGCCCTACAACAATTGGCTCCTTCTCTTGTTATGATGGAGAGGTTAAAGGAGAAGGAGAAAATGATGGAGGTGGTTCTTCTGCAACAACGACCACGACGACGACAACCACAATCGATGATGCTAACCCTAGGGCTAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCAGGATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACAAAGGTAATTAGTGTCCTTTTTCAATTAGTTGCAAAGATATAATTTTTGTTAGGGTTGCTACTTTCAAGTTTTCAATATGATATGCTTAATATTAATTTGAGGATGAAAAATGTAATGTAATATATATACTTATATTTATATATCCACGTACAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGAAGTTGAATGCTGAGGTTTCTGGACTTGAAGCATCTTTATCAGTGTCTGAAAATTATCAAGGATCAATTAGTAACACTATTAATGTTCAAAGCCATCCAATTTGCAAGAAAATTATCCAGGTTTGATTAATTTTTCATTTTACATTCTAGTATTTTTTTTTTTAGATCCAAGTTATAATTTCACGAGTCTATGATGAACAAGTATTTTTTTTTCTTTTACAAGACTCAGACTCTAAACCTTATCTTAGACCAACATTTTTTCTTTAACAGCAAAATTTATTAACAACCAGTCTATGCACAAGACGAACAGAGATCAGTAAGATAGAAAACTACAAACAAGGGGCATCAGATATAGGCAGAACAAAGTCATACGTCTTAGACAAACACTTTATAGTTGGTTTTTCAATGTATCGTACACAATTTTAATAGTTGTGTTGTGCATTATGATATGTAGGTGGACATGTTCCAAGTGGAGGAAAGAGGTTATTATGCAAAAATATTGTGCAATAAAGGAGAAGGAGTAGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCAAATTTCAATGTTCAAAATTCAAACTTGGCTACAGTTTGTGACACTTTTCTACTTACATTTACATTGAATGTAAGTTATTATTACCCTCTTCCATTAATTCATTGATTAATGCTTAGGGTTATTGATGTCTTTGCTTAAGGATTAATTAGTCATTGTTGTGTTGAAAAATATAGGTAAACGGTTCTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCATTTTGA
Protein sequence

>MS.gene35296.t1

MDSLENTNNFELHDFIDDPNFDQFIDLIRGEHEDAISNFGSDLINDCFIDNNINQLLSNPPNLLFDHNNNNIINNNVVNEYNPSPTTIGSFSCYDGEVKGEGENDGGGSSATTTTTTTTTIDDANPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLNAEVSGLEASLSVSENYQGSISNTINVQSHPICKKIIQVDMFQVEERGYYAKILCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLNVNGSEPEMNLQNLKLWVAGALLNQGFEFMPSF