AlfalfaGEDB | MS.gene35404

M. sativa cultivar XinJiangDaYe / MS.gene35404

KEGG: K14432
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35404.t1	XP_003596807.1	91.4	325	27	1	1	325	1	324	5.80E-155	557

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35404.t1	Q8RYD6	44.3	341	143	10	7	325	16	331	3.8e-54	213.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35404.t1	G7ITR9	91.4	325	27	1	1	325	1	324	4.2e-155	557.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene35404.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35404.t1	MTR_2g086340	94.462	325	17	1	1	325	1	324	0.0	610
MS.gene35404.t1	MTR_2g086390	67.485	326	67	5	1	325	1	288	3.71e-149	421
MS.gene35404.t1	MTR_2g086390	67.474	289	60	4	1	288	1	256	1.44e-132	379
MS.gene35404.t1	MTR_8g043960	37.324	284	131	11	25	285	26	285	8.16e-36	132
MS.gene35404.t1	MTR_3g010660	36.054	294	144	14	20	285	17	294	3.50e-35	130
MS.gene35404.t1	MTR_7g088090	35.855	304	148	12	12	286	8	293	1.26e-34	129
MS.gene35404.t1	MTR_7g104480	47.761	134	57	4	29	149	45	178	2.56e-29	116
MS.gene35404.t1	MTR_7g104480	47.674	172	58	5	168	322	272	428	2.29e-26	108
MS.gene35404.t1	MTR_6g026800	36.455	299	131	11	24	285	17	293	3.12e-27	108
MS.gene35404.t1	MTR_3g101780	42.748	131	60	6	24	151	28	146	1.06e-19	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35404.t1	AT3G44460	44.444	333	154	9	7	325	16	331	1.92e-69	219
MS.gene35404.t1	AT2G36270	35.561	419	138	13	20	320	34	438	3.77e-56	188
MS.gene35404.t1	AT2G36270	35.561	419	138	13	20	320	34	438	3.77e-56	188
MS.gene35404.t1	AT2G36270	35.623	393	125	11	20	298	34	412	5.15e-55	186
MS.gene35404.t1	AT3G56850	39.785	279	123	12	25	285	18	269	2.65e-41	145
MS.gene35404.t1	AT2G41070	35.714	266	121	8	24	286	17	235	4.08e-37	133
MS.gene35404.t1	AT2G41070	35.714	266	121	8	24	286	26	244	7.88e-37	133
MS.gene35404.t1	AT2G41070	35.714	266	121	8	24	286	17	235	9.83e-37	133
MS.gene35404.t1	AT2G41070	35.714	266	121	8	24	286	17	235	9.83e-37	133
MS.gene35404.t1	AT2G41070	35.714	266	121	8	24	286	17	235	9.83e-37	133

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Find 63 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTGACTGAATCAAGT+GGG	0.724655	2.1:-15736093	MS.gene35404:CDS
AACACTTGGAGAAATGAGTT+TGG	0.378783	2.1:-15736356	MS.gene35404:CDS
AAGGAATTCATCCATGTTGA+GGG	0.524720	2.1:+15736606	None:intergenic
AATAGGAAGAGGATAATTGA+TGG	0.515045	2.1:-15736064	MS.gene35404:CDS
AATCAAGTGGGTGTAGTAAT+AGG	0.330386	2.1:-15736081	MS.gene35404:CDS
AATCATAATGGCAATGTTTC+AGG	0.221412	2.1:-15736277	MS.gene35404:CDS
ACTCAATGTGTGTCTAGAAA+TGG	0.419253	2.1:-15736187	MS.gene35404:CDS
ACTTACCTCTTGTTTCCTCT+TGG	0.402763	2.1:+15735253	None:intergenic
ACTTGGAGAAATGAGTTTGG+AGG	0.522848	2.1:-15736353	MS.gene35404:CDS
AGAAAACTGTGGATGAAGTT+TGG	0.470434	2.1:-15736456	MS.gene35404:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGGAAGAGGATAATTGA+TGG	-	chr2.1:15735746-15735765	MS.gene35404:intron	30.0%
AATCATAATGGCAATGTTTC+AGG	-	chr2.1:15735533-15735552	MS.gene35404:intron	30.0%
AGAATGAATTACCAAGTTGT+TGG	+	chr2.1:15735313-15735332	None:intergenic	30.0%
CATAGAACTATAACAAAGAG+TGG	+	chr2.1:15735877-15735896	None:intergenic	30.0%
GAATGAATTACCAAGTTGTT+GGG	+	chr2.1:15735312-15735331	None:intergenic	30.0%
TAATGTGAATCACAAAATGC+AGG	+	chr2.1:15736017-15736036	None:intergenic	30.0%
TCTACAACAATTAGATCAAG+AGG	-	chr2.1:15735070-15735089	MS.gene35404:CDS	30.0%
TGAAAAGCTAAAACAAGTTC+TGG	-	chr2.1:15736398-15736417	MS.gene35404:CDS	30.0%
TGCTAAAAATGTTGCAACAA+CGG	-	chr2.1:15735274-15735293	MS.gene35404:intron	30.0%
TGTTATTGTGTGACAACATT+TGG	+	chr2.1:15735661-15735680	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	15735065	15736767	15735065	ID=MS.gene35404
chr2.1	mRNA	15735065	15736767	15735065	ID=MS.gene35404.t1;Parent=MS.gene35404
chr2.1	exon	15735979	15736767	15735979	ID=MS.gene35404.t1.exon1;Parent=MS.gene35404.t1
chr2.1	CDS	15735979	15736767	15735979	ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
chr2.1	exon	15735413	15735484	15735413	ID=MS.gene35404.t1.exon2;Parent=MS.gene35404.t1
chr2.1	CDS	15735413	15735484	15735413	ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
chr2.1	exon	15735259	15735288	15735259	ID=MS.gene35404.t1.exon3;Parent=MS.gene35404.t1
chr2.1	CDS	15735259	15735288	15735259	ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
chr2.1	exon	15735065	15735151	15735065	ID=MS.gene35404.t1.exon4;Parent=MS.gene35404.t1
chr2.1	CDS	15735065	15735151	15735065	ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1

Gene Sequence

>MS.gene35404

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACGGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTGCAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTTTTGCAACATACCAAATGTTGTCACACAATAACAACTTAGGAGTGAAGGATTTTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGATGGTCCTCCTGAAGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGTTTTTGTGTTCATCATACTCCACTCTTTGTTATAGTTCTATGTTAGGTTTAAAGTTGCAGTTACCTTCGTTGTCGCTTCACAATTCTTGATTTCGCAATAAATTATGGTCGAATGCGACAGGTTCAGCCTCGATCACGGTCACAGACCTTTTTTTAAAACCTGCATTTTGTGATTCACATTAAGCTCAAGGTTTTAAATATACGTCTGTGACCACAATTTAGGTTGCCTTAACAGCATTTGACCGCCATATCATGTCTGGTACAAACCTTGGTAACTAGTTGCTAACATTTAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAGCCTTACCCTGTTTTACAACAAGAGGCTGTTTCCAGGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACCAGTTGCTAACATTTGCCTATAAAAAAATATCTTGCAATGTAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATGAAAAGCTAAAACAAGTTCTGGTAAACAATACTGAAATTCAATATTCTGTTCTTTTTTTCTTTCTTTCTTATTTCTTGTTTTTTTTTTCTTCATGGTTTATGTCTTCTGATGCTTAACATATATTTCTATTTAAATATGAAATAGGCTGAAGCTGAGACCAAGAGGAAACAAGAGGTAAGTGATTGATTATATGTTTCAAATATAAGTTGATATTTATATAACAAGGGCTAATATTACTAACATCATTGTGAATGTTTGTTTATTATTATATATTGCTACAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCAGAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGA

Protein sequence

>MS.gene35404.t1

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNIASCYGLRPSMGMGFSTQCVSRNGFATYQMLSHNNNLGVKDFAVEKCQSLTESSGCSNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENEKLKQVLAEAETKRKQELLQRKHSTKAQKGAEKLRAMRRPISTTW