AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35404

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35404.t1 MTR_2g086340 94.462 325 17 1 1 325 1 324 0.0 610
MS.gene35404.t1 MTR_2g086390 67.485 326 67 5 1 325 1 288 3.71e-149 421
MS.gene35404.t1 MTR_2g086390 67.474 289 60 4 1 288 1 256 1.44e-132 379
MS.gene35404.t1 MTR_8g043960 37.324 284 131 11 25 285 26 285 8.16e-36 132
MS.gene35404.t1 MTR_3g010660 36.054 294 144 14 20 285 17 294 3.50e-35 130
MS.gene35404.t1 MTR_7g088090 35.855 304 148 12 12 286 8 293 1.26e-34 129
MS.gene35404.t1 MTR_7g104480 47.761 134 57 4 29 149 45 178 2.56e-29 116
MS.gene35404.t1 MTR_7g104480 47.674 172 58 5 168 322 272 428 2.29e-26 108
MS.gene35404.t1 MTR_6g026800 36.455 299 131 11 24 285 17 293 3.12e-27 108
MS.gene35404.t1 MTR_3g101780 42.748 131 60 6 24 151 28 146 1.06e-19 89.7
MS.gene35404.t1 MTR_3g101780 70.175 57 17 0 229 285 339 395 1.32e-16 80.5
MS.gene35404.t1 MTR_4g085910 50.549 91 35 2 236 325 295 376 6.47e-16 78.2
MS.gene35404.t1 MTR_4g085910 34.559 136 69 4 24 151 19 142 9.51e-15 74.7
MS.gene35404.t1 MTR_7g015990 63.830 47 14 1 242 285 120 166 5.54e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35404.t1 AT3G44460 44.444 333 154 9 7 325 16 331 1.92e-69 219
MS.gene35404.t1 AT2G36270 35.561 419 138 13 20 320 34 438 3.77e-56 188
MS.gene35404.t1 AT2G36270 35.561 419 138 13 20 320 34 438 3.77e-56 188
MS.gene35404.t1 AT2G36270 35.623 393 125 11 20 298 34 412 5.15e-55 186
MS.gene35404.t1 AT3G56850 39.785 279 123 12 25 285 18 269 2.65e-41 145
MS.gene35404.t1 AT2G41070 35.714 266 121 8 24 286 17 235 4.08e-37 133
MS.gene35404.t1 AT2G41070 35.714 266 121 8 24 286 26 244 7.88e-37 133
MS.gene35404.t1 AT2G41070 35.714 266 121 8 24 286 17 235 9.83e-37 133
MS.gene35404.t1 AT2G41070 35.714 266 121 8 24 286 17 235 9.83e-37 133
MS.gene35404.t1 AT2G41070 35.714 266 121 8 24 286 17 235 9.83e-37 133
MS.gene35404.t1 AT1G49720 28.756 386 181 13 21 325 20 392 1.30e-21 94.7
MS.gene35404.t1 AT1G49720 28.756 386 181 13 21 325 20 392 1.30e-21 94.7
MS.gene35404.t1 AT1G49720 28.889 360 165 12 21 299 20 369 2.04e-20 91.3
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 37 189 1.00e-19 89.7
MS.gene35404.t1 AT1G45249 51.456 103 41 4 224 325 337 431 5.89e-16 78.6
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 37 189 1.00e-19 89.7
MS.gene35404.t1 AT1G45249 51.456 103 41 4 224 325 337 431 5.89e-16 78.6
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.28e-19 89.4
MS.gene35404.t1 AT1G45249 51.456 103 41 4 224 325 322 416 5.26e-16 78.6
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.93e-19 89.0
MS.gene35404.t1 AT1G45249 46.491 114 41 5 224 325 322 427 3.81e-13 70.1
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.64e-19 87.8
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.64e-19 87.8
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.49e-19 87.8
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.49e-19 87.8
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.49e-19 87.8
MS.gene35404.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.49e-19 87.8
MS.gene35404.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.40e-18 84.3
MS.gene35404.t1 AT4G34000 72.917 48 13 0 238 285 369 416 1.70e-14 74.3
MS.gene35404.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.97e-18 84.3
MS.gene35404.t1 AT4G34000 50.000 88 42 1 238 325 369 454 3.19e-16 79.3
MS.gene35404.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.97e-18 84.3
MS.gene35404.t1 AT4G34000 50.000 88 42 1 238 325 369 454 3.19e-16 79.3
MS.gene35404.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.97e-18 84.3
MS.gene35404.t1 AT4G34000 50.000 88 42 1 238 325 369 454 3.19e-16 79.3
MS.gene35404.t1 AT3G19290 47.664 107 52 2 219 325 329 431 3.70e-17 82.0
MS.gene35404.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.64e-16 80.1
MS.gene35404.t1 AT3G19290 47.664 107 52 2 219 325 329 431 3.70e-17 82.0
MS.gene35404.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.64e-16 80.1
MS.gene35404.t1 AT3G19290 47.664 107 53 2 219 325 329 432 5.67e-17 81.6
MS.gene35404.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.62e-16 80.1
MS.gene35404.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.22e-16 80.5
MS.gene35404.t1 AT3G19290 54.321 81 37 0 219 299 329 409 5.96e-16 78.6
MS.gene35404.t1 AT5G44080 30.000 230 125 6 98 325 120 315 1.45e-16 79.3
MS.gene35404.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.51e-16 80.1
MS.gene35404.t1 AT2G17770 31.100 209 117 8 100 301 1 189 2.13e-13 68.2
MS.gene35404.t1 AT5G42910 38.095 126 55 5 24 146 21 126 1.29e-12 68.2
MS.gene35404.t1 AT1G03970 26.667 210 99 4 98 300 85 246 1.88e-12 67.0

Find 63 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACCAGGTTGTGCTTAT+AGG 0.185713 2.1:+15735063 None:intergenic
AATCATAATGGCAATGTTTC+AGG 0.221412 2.1:-15736277 MS.gene35404:CDS
TCTCTGTCCCTCCTCCAATT+TGG 0.252757 2.1:-15736480 MS.gene35404:CDS
TTGAATATTGCAAGTTGTTA+TGG 0.294474 2.1:-15736241 MS.gene35404:CDS
AATCAAGTGGGTGTAGTAAT+AGG 0.330386 2.1:-15736081 MS.gene35404:CDS
TGAAAAGCTAAAACAAGTTC+TGG 0.355048 2.1:-15735412 MS.gene35404:intron
GTCATTGAGGCTTGTTCACC+AGG 0.361408 2.1:+15735050 None:intergenic
AACACTTGGAGAAATGAGTT+TGG 0.378783 2.1:-15736356 MS.gene35404:CDS
GCATTCAACAAAGGCTCAAA+AGG 0.385055 2.1:-15735115 MS.gene35404:CDS
CTTCGCTCCACTACAACTTC+AGG 0.394469 2.1:+15736037 None:intergenic
ACTTACCTCTTGTTTCCTCT+TGG 0.402763 2.1:+15735253 None:intergenic
TGTTATTGTGTGACAACATT+TGG 0.412341 2.1:+15736152 None:intergenic
AGAATGAATTACCAAGTTGT+TGG 0.415586 2.1:+15736500 None:intergenic
ACTCAATGTGTGTCTAGAAA+TGG 0.419253 2.1:-15736187 MS.gene35404:CDS
AGCTCTTTCCACTCTTGCAT+TGG 0.422494 2.1:+15736635 None:intergenic
GAGGATTTCTTAGTAAAAGC+TGG 0.422923 2.1:-15736334 MS.gene35404:CDS
TGCAAGAGTGGAAAGAGCTT+TGG 0.423243 2.1:-15736631 MS.gene35404:CDS
ATGAATTCCTTGCCAGCATA+TGG 0.439595 2.1:-15736594 MS.gene35404:CDS
TTGCAAGTTGTTATGGTTTG+AGG 0.440862 2.1:-15736234 MS.gene35404:CDS
GAATGAATTACCAAGTTGTT+GGG 0.445076 2.1:+15736501 None:intergenic
TCTTGCATTGGAACTCATCA+AGG 0.446472 2.1:+15736647 None:intergenic
TTGCCATTCAAGAATCATAA+TGG 0.446766 2.1:-15736289 MS.gene35404:CDS
TTGCCATTATGATTCTTGAA+TGG 0.449693 2.1:+15736286 None:intergenic
TTATGGTTTGAGGCCTTCAA+TGG 0.451042 2.1:-15736224 MS.gene35404:CDS
GAAAATCCCATTCCCATTGA+AGG 0.469209 2.1:+15736211 None:intergenic
AGAAAACTGTGGATGAAGTT+TGG 0.470434 2.1:-15736456 MS.gene35404:CDS
TTGAGGCCTTCAATGGGAAT+GGG 0.472705 2.1:-15736217 MS.gene35404:CDS
CTCAAGAAGCAACAAACACT+TGG 0.475735 2.1:-15736370 MS.gene35404:CDS
TTATTTGTTTCTTTGAATTG+TGG 0.479374 2.1:+15736412 None:intergenic
CACACCGTTTCCCAACAACT+TGG 0.481051 2.1:-15736511 MS.gene35404:CDS
GCTTCTGCTTGTTCTTGCAA+TGG 0.484450 2.1:+15736715 None:intergenic
TTTGAGGCCTTCAATGGGAA+TGG 0.489129 2.1:-15736218 MS.gene35404:CDS
ATTACCAAGTTGTTGGGAAA+CGG 0.492082 2.1:+15736507 None:intergenic
TTGTTTCTTTGAATTGTGGT+TGG 0.500429 2.1:+15736416 None:intergenic
AATAGGAAGAGGATAATTGA+TGG 0.515045 2.1:-15736064 MS.gene35404:CDS
GTCATTAGAACTCCATATGC+TGG 0.516405 2.1:+15736582 None:intergenic
GTGGGTGTAGTAATAGGAAG+AGG 0.522464 2.1:-15736075 MS.gene35404:CDS
ACTTGGAGAAATGAGTTTGG+AGG 0.522848 2.1:-15736353 MS.gene35404:CDS
AAGGAATTCATCCATGTTGA+GGG 0.524720 2.1:+15736606 None:intergenic
TAACAACTTGCAATATTCAA+TGG 0.527054 2.1:+15736244 None:intergenic
TTGTCACACAATAACAACTT+AGG 0.536827 2.1:-15736145 MS.gene35404:CDS
ATCTAATTGTTGTAGAGCCA+TGG 0.537356 2.1:+15736747 None:intergenic
GGCATATACATTAGAGCTAG+AGG 0.542562 2.1:-15735463 MS.gene35404:CDS
TATGGTTTGAGGCCTTCAAT+GGG 0.547796 2.1:-15736223 MS.gene35404:CDS
TCGTTCTCGAGCAAGAAGAC+AGG 0.556810 2.1:-15735978 MS.gene35404:intron
GAGCTTTGGTTCCCTCAACA+TGG 0.562617 2.1:-15736617 MS.gene35404:CDS
CATTCAACAAAGGCTCAAAA+GGG 0.564482 2.1:-15735114 MS.gene35404:CDS
CAAGGAATTCATCCATGTTG+AGG 0.566750 2.1:+15736605 None:intergenic
TAGAACTCCATATGCTGGCA+AGG 0.571014 2.1:+15736587 None:intergenic
CAATAACAACTTAGGAGTGA+AGG 0.581916 2.1:-15736137 MS.gene35404:CDS
TGGTCCTCCTGAAGTTGTAG+TGG 0.592007 2.1:-15736044 MS.gene35404:CDS
TCTACAACAATTAGATCAAG+AGG 0.593387 2.1:-15736740 MS.gene35404:CDS
TCCAATTTGGAAGAAAACTG+TGG 0.593419 2.1:-15736467 MS.gene35404:CDS
GCAACGAAAGCATTCAACAA+AGG 0.598492 2.1:-15735124 MS.gene35404:CDS
CTGAAGTTGTAGTGGAGCGA+AGG 0.600061 2.1:-15736036 MS.gene35404:CDS
GATGAGTTCCAATGCAAGAG+TGG 0.607955 2.1:-15736643 MS.gene35404:CDS
CTTGCATTGGAACTCATCAA+GGG 0.629128 2.1:+15736648 None:intergenic
CGCTCCACTACAACTTCAGG+AGG 0.642123 2.1:+15736040 None:intergenic
AGGCTGAAGCTGAGACCAAG+AGG 0.647700 2.1:-15735268 MS.gene35404:CDS
TGAGACCAAGAGGAAACAAG+AGG 0.662863 2.1:-15735258 MS.gene35404:intron
GAAGGCCTATAAGCACAACC+TGG 0.668432 2.1:-15735068 MS.gene35404:CDS
CAAAGCTTGACTGAATCAAG+TGG 0.677316 2.1:-15736094 MS.gene35404:CDS
AAAGCTTGACTGAATCAAGT+GGG 0.724655 2.1:-15736093 MS.gene35404:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATTTAAATATGAAAT+AGG - chr2.1:15736522-15736541 MS.gene35404:CDS 10.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2.1:15736603-15736622 MS.gene35404:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2.1:15736604-15736623 MS.gene35404:CDS 15.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2.1:15736324-15736343 None:intergenic 15.0%
!! AAAAAAATATCTTGCAATGT+AGG - chr2.1:15736326-15736345 MS.gene35404:CDS 20.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2.1:15736004-15736023 None:intergenic 20.0%
!!! TCTTGTTTTTTTTTTCTTCA+TGG - chr2.1:15736472-15736491 MS.gene35404:CDS 20.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2.1:15735401-15735420 None:intergenic 20.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2.1:15736724-15736743 MS.gene35404:CDS 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2.1:15735805-15735824 MS.gene35404:intron 25.0%
! ACTAGTTGCTAACATTTAAA+AGG - chr2.1:15736129-15736148 MS.gene35404:CDS 25.0%
! CTAGTTGCTAACATTTAAAA+GGG - chr2.1:15736130-15736149 MS.gene35404:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2.1:15735940-15735959 MS.gene35404:intron 25.0%
! TAACAACTTGCAATATTCAA+TGG + chr2.1:15735569-15735588 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2.1:15735569-15735588 MS.gene35404:intron 25.0%
!! CTTTGTTATAGTTCTATGTT+AGG - chr2.1:15735879-15735898 MS.gene35404:intron 25.0%
AATAGGAAGAGGATAATTGA+TGG - chr2.1:15735746-15735765 MS.gene35404:intron 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2.1:15735533-15735552 MS.gene35404:intron 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2.1:15735313-15735332 None:intergenic 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2.1:15735877-15735896 None:intergenic 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2.1:15735312-15735331 None:intergenic 30.0%
TAATGTGAATCACAAAATGC+AGG + chr2.1:15736017-15736036 None:intergenic 30.0%
TCTACAACAATTAGATCAAG+AGG - chr2.1:15735070-15735089 MS.gene35404:CDS 30.0%
TGAAAAGCTAAAACAAGTTC+TGG - chr2.1:15736398-15736417 MS.gene35404:CDS 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2.1:15735274-15735293 MS.gene35404:intron 30.0%
TGTTATTGTGTGACAACATT+TGG + chr2.1:15735661-15735680 None:intergenic 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2.1:15735527-15735546 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2.1:15735521-15735540 MS.gene35404:intron 30.0%
TTGTCACACAATAACAACTT+AGG - chr2.1:15735665-15735684 MS.gene35404:intron 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2.1:15735397-15735416 None:intergenic 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2.1:15735134-15735153 None:intergenic 30.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2.1:15735717-15735736 MS.gene35404:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2.1:15735454-15735473 MS.gene35404:CDS 35.0%
AAGGAATTCATCCATGTTGA+GGG + chr2.1:15735207-15735226 None:intergenic 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2.1:15735729-15735748 MS.gene35404:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2.1:15735623-15735642 MS.gene35404:intron 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2.1:15735354-15735373 MS.gene35404:intron 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2.1:15736124-15736143 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2.1:15735306-15735325 None:intergenic 35.0%
CAATAACAACTTAGGAGTGA+AGG - chr2.1:15735673-15735692 MS.gene35404:intron 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2.1:15736696-15736715 MS.gene35404:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2.1:15735476-15735495 MS.gene35404:intron 35.0%
TAACATTTAAAAGGGCAACC+CGG - chr2.1:15736138-15736157 MS.gene35404:CDS 35.0%
TATAGGCAAATGTTAGCAAC+TGG + chr2.1:15736307-15736326 None:intergenic 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2.1:15735343-15735362 MS.gene35404:intron 35.0%
TGTGATTCACATTAAGCTCA+AGG - chr2.1:15736023-15736042 MS.gene35404:CDS 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2.1:15736069-15736088 None:intergenic 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2.1:15735576-15735595 MS.gene35404:intron 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2.1:15735344-15735363 None:intergenic 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2.1:15735347-15735366 None:intergenic 35.0%
! TCTTGTTGTAAAACAGGGTA+AGG + chr2.1:15736230-15736249 None:intergenic 35.0%
! TTACCCTGTTTTACAACAAG+AGG - chr2.1:15736229-15736248 MS.gene35404:CDS 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2.1:15735340-15735359 None:intergenic 35.0%
AAATTATGGTCGAATGCGAC+AGG - chr2.1:15735954-15735973 MS.gene35404:intron 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2.1:15735457-15735476 MS.gene35404:CDS 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2.1:15736104-15736123 MS.gene35404:CDS 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2.1:15735216-15735235 MS.gene35404:intron 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2.1:15735716-15735735 MS.gene35404:intron 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2.1:15735208-15735227 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr2.1:15736204-15736223 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2.1:15735440-15735459 MS.gene35404:CDS 40.0%
CTTGCATTGGAACTCATCAA+GGG + chr2.1:15735165-15735184 None:intergenic 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2.1:15735602-15735621 None:intergenic 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2.1:15736695-15736714 MS.gene35404:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2.1:15736347-15736366 MS.gene35404:CDS 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2.1:15736103-15736122 None:intergenic 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2.1:15735231-15735250 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr2.1:15736280-15736299 None:intergenic 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2.1:15736055-15736074 MS.gene35404:CDS 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2.1:15735166-15735185 None:intergenic 40.0%
TTGTACCAGACATGATATGG+CGG + chr2.1:15736100-15736119 None:intergenic 40.0%
! ACAGCCTCTTGTTGTAAAAC+AGG + chr2.1:15736236-15736255 None:intergenic 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2.1:15736560-15736579 None:intergenic 40.0%
! CAGCCTCTTGTTGTAAAACA+GGG + chr2.1:15736235-15736254 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2.1:15735341-15735360 None:intergenic 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2.1:15735587-15735606 MS.gene35404:intron 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2.1:15735424-15735443 None:intergenic 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2.1:15735586-15735605 MS.gene35404:intron 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2.1:15736686-15736705 MS.gene35404:CDS 40.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2.1:15735178-15735197 None:intergenic 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2.1:15736084-15736103 None:intergenic 45.0%
GAATTGTGAAGCGACAACGA+AGG + chr2.1:15735921-15735940 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2.1:15735167-15735186 MS.gene35404:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr2.1:15736205-15736224 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr2.1:15736208-15736227 None:intergenic 45.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2.1:15735098-15735117 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr2.1:15736274-15736293 None:intergenic 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2.1:15735735-15735754 MS.gene35404:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2.1:15735226-15735245 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr2.1:15736273-15736292 None:intergenic 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2.1:15736552-15736571 MS.gene35404:CDS 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2.1:15735179-15735198 MS.gene35404:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2.1:15735593-15735612 MS.gene35404:intron 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2.1:15736092-15736111 MS.gene35404:CDS 45.0%
! AGGAGTGAAGGATTTTGCTG+TGG - chr2.1:15735685-15735704 MS.gene35404:intron 45.0%
! TACAACAAGAGGCTGTTTCC+AGG - chr2.1:15736240-15736259 MS.gene35404:CDS 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2.1:15735592-15735611 MS.gene35404:intron 45.0%
CACACCGTTTCCCAACAACT+TGG - chr2.1:15735299-15735318 MS.gene35404:intron 50.0%
CTTCGCTCCACTACAACTTC+AGG + chr2.1:15735776-15735795 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2.1:15736742-15736761 MS.gene35404:CDS 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2.1:15735832-15735851 MS.gene35404:intron 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2.1:15735330-15735349 MS.gene35404:intron 50.0%
TGGTCCTCCTGAAGTTGTAG+TGG - chr2.1:15735766-15735785 MS.gene35404:intron 50.0%
! CTGAAGTTGTAGTGGAGCGA+AGG - chr2.1:15735774-15735793 MS.gene35404:intron 50.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2.1:15735193-15735212 MS.gene35404:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr2.1:15736261-15736280 None:intergenic 55.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2.1:15735985-15736004 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - chr2.1:15736164-15736183 MS.gene35404:CDS 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2.1:15736542-15736561 MS.gene35404:CDS 55.0%
CGCTCCACTACAACTTCAGG+AGG + chr2.1:15735773-15735792 None:intergenic 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr2.1:15736165-15736184 MS.gene35404:CDS 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2.1:15735971-15735990 MS.gene35404:intron 55.0%
CATATGCAGGGTCCGGGAAG+GGG - chr2.1:15736177-15736196 MS.gene35404:CDS 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr2.1:15736177-15736196 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr2.1:15736176-15736195 MS.gene35404:CDS 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr2.1:15736176-15736195 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr2.1:15736160-15736179 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr2.1:15736192-15736211 None:intergenic 60.0%
CGCATATGCAGGGTCCGGGA+AGG - chr2.1:15736175-15736194 MS.gene35404:CDS 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr2.1:15736190-15736209 MS.gene35404:CDS 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr2.1:15736171-15736190 MS.gene35404:CDS 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr2.1:15736170-15736189 MS.gene35404:CDS 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr2.1:15736159-15736178 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 15735065 15736767 15735065 ID=MS.gene35404
chr2.1 mRNA 15735065 15736767 15735065 ID=MS.gene35404.t1;Parent=MS.gene35404
chr2.1 exon 15735979 15736767 15735979 ID=MS.gene35404.t1.exon1;Parent=MS.gene35404.t1
chr2.1 CDS 15735979 15736767 15735979 ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
chr2.1 exon 15735413 15735484 15735413 ID=MS.gene35404.t1.exon2;Parent=MS.gene35404.t1
chr2.1 CDS 15735413 15735484 15735413 ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
chr2.1 exon 15735259 15735288 15735259 ID=MS.gene35404.t1.exon3;Parent=MS.gene35404.t1
chr2.1 CDS 15735259 15735288 15735259 ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
chr2.1 exon 15735065 15735151 15735065 ID=MS.gene35404.t1.exon4;Parent=MS.gene35404.t1
chr2.1 CDS 15735065 15735151 15735065 ID=cds.MS.gene35404.t1;Parent=MS.gene35404.t1
Gene Sequence

>MS.gene35404

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACGGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTGCAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTTTTGCAACATACCAAATGTTGTCACACAATAACAACTTAGGAGTGAAGGATTTTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGATGGTCCTCCTGAAGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGTTTTTGTGTTCATCATACTCCACTCTTTGTTATAGTTCTATGTTAGGTTTAAAGTTGCAGTTACCTTCGTTGTCGCTTCACAATTCTTGATTTCGCAATAAATTATGGTCGAATGCGACAGGTTCAGCCTCGATCACGGTCACAGACCTTTTTTTAAAACCTGCATTTTGTGATTCACATTAAGCTCAAGGTTTTAAATATACGTCTGTGACCACAATTTAGGTTGCCTTAACAGCATTTGACCGCCATATCATGTCTGGTACAAACCTTGGTAACTAGTTGCTAACATTTAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAGCCTTACCCTGTTTTACAACAAGAGGCTGTTTCCAGGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACCAGTTGCTAACATTTGCCTATAAAAAAATATCTTGCAATGTAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATGAAAAGCTAAAACAAGTTCTGGTAAACAATACTGAAATTCAATATTCTGTTCTTTTTTTCTTTCTTTCTTATTTCTTGTTTTTTTTTTCTTCATGGTTTATGTCTTCTGATGCTTAACATATATTTCTATTTAAATATGAAATAGGCTGAAGCTGAGACCAAGAGGAAACAAGAGGTAAGTGATTGATTATATGTTTCAAATATAAGTTGATATTTATATAACAAGGGCTAATATTACTAACATCATTGTGAATGTTTGTTTATTATTATATATTGCTACAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCAGAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGA
Protein sequence

>MS.gene35404.t1

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNIASCYGLRPSMGMGFSTQCVSRNGFATYQMLSHNNNLGVKDFAVEKCQSLTESSGCSNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENEKLKQVLAEAETKRKQELLQRKHSTKAQKGAEKLRAMRRPISTTW