Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35405.t1 | XP_003596811.1 | 80.3 | 290 | 37 | 3 | 1 | 272 | 1 | 288 | 4.80E-110 | 407.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35405.t1 | Q8RYD6 | 38.8 | 304 | 136 | 9 | 3 | 265 | 25 | 319 | 1.8e-33 | 144.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35405.t1 | G7ITS3 | 80.3 | 290 | 37 | 3 | 1 | 272 | 1 | 288 | 3.4e-110 | 407.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene35405.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35405.t1 | MTR_2g086390 | 82.594 | 293 | 25 | 4 | 1 | 272 | 1 | 288 | 1.32e-169 | 470 |
MS.gene35405.t1 | MTR_2g086390 | 80.460 | 261 | 25 | 4 | 1 | 240 | 1 | 256 | 2.94e-145 | 409 |
MS.gene35405.t1 | MTR_2g086340 | 64.000 | 325 | 63 | 8 | 1 | 272 | 1 | 324 | 3.58e-123 | 354 |
MS.gene35405.t1 | MTR_3g010660 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 2.71e-26 | 105 |
MS.gene35405.t1 | MTR_8g043960 | 35.581 | 267 | 112 | 11 | 18 | 237 | 32 | 285 | 7.01e-26 | 103 |
MS.gene35405.t1 | MTR_7g088090 | 32.862 | 283 | 113 | 10 | 19 | 238 | 25 | 293 | 1.71e-23 | 97.8 |
MS.gene35405.t1 | MTR_7g104480 | 42.222 | 135 | 61 | 3 | 18 | 135 | 47 | 181 | 1.72e-23 | 99.0 |
MS.gene35405.t1 | MTR_7g104480 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.47e-20 | 90.9 |
MS.gene35405.t1 | MTR_6g026800 | 32.971 | 276 | 121 | 9 | 19 | 237 | 25 | 293 | 2.55e-18 | 83.6 |
MS.gene35405.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 37 | 241 | 3.26e-17 | 79.7 |
MS.gene35405.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 32 | 236 | 3.90e-17 | 79.3 |
MS.gene35405.t1 | MTR_3g101780 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 4.88e-15 | 74.7 |
MS.gene35405.t1 | MTR_3g101780 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 8.55e-14 | 71.2 |
MS.gene35405.t1 | MTR_4g085910 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 7.72e-13 | 68.2 |
MS.gene35405.t1 | MTR_4g094390 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.83e-12 | 65.1 |
MS.gene35405.t1 | MTR_7g015990 | 43.956 | 91 | 45 | 3 | 153 | 237 | 76 | 166 | 6.28e-12 | 63.5 |
MS.gene35405.t1 | MTR_1g098590 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 5.36e-11 | 61.6 |
MS.gene35405.t1 | MTR_5g022780 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 6.64e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35405.t1 | AT3G44460 | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 3.29e-49 | 166 |
MS.gene35405.t1 | AT3G56850 | 35.000 | 260 | 115 | 11 | 18 | 237 | 24 | 269 | 1.06e-28 | 111 |
MS.gene35405.t1 | AT2G36270 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.52e-27 | 110 |
MS.gene35405.t1 | AT2G36270 | 32.768 | 177 | 55 | 6 | 18 | 132 | 45 | 219 | 9.51e-16 | 77.0 |
MS.gene35405.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.22e-27 | 110 |
MS.gene35405.t1 | AT2G36270 | 32.768 | 177 | 55 | 6 | 18 | 132 | 45 | 219 | 3.82e-16 | 78.2 |
MS.gene35405.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.22e-27 | 110 |
MS.gene35405.t1 | AT2G36270 | 32.768 | 177 | 55 | 6 | 18 | 132 | 45 | 219 | 3.82e-16 | 78.2 |
MS.gene35405.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 1.80e-25 | 101 |
MS.gene35405.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.23e-25 | 101 |
MS.gene35405.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.23e-25 | 101 |
MS.gene35405.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.23e-25 | 101 |
MS.gene35405.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 48 | 244 | 4.40e-25 | 100 |
MS.gene35405.t1 | AT5G44080 | 29.787 | 188 | 99 | 5 | 81 | 252 | 120 | 290 | 1.73e-15 | 75.5 |
MS.gene35405.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 9.48e-15 | 73.9 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 2.08e-11 | 63.9 |
MS.gene35405.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.20e-14 | 73.6 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 1.87e-11 | 64.3 |
MS.gene35405.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.20e-14 | 73.6 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 1.87e-11 | 64.3 |
MS.gene35405.t1 | AT1G03970 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 4.47e-14 | 70.9 |
MS.gene35405.t1 | AT4G34000 | 57.143 | 63 | 27 | 0 | 190 | 252 | 369 | 431 | 7.92e-14 | 71.2 |
MS.gene35405.t1 | AT4G34000 | 57.143 | 63 | 27 | 0 | 190 | 252 | 369 | 431 | 7.92e-14 | 71.2 |
MS.gene35405.t1 | AT4G34000 | 57.143 | 63 | 27 | 0 | 190 | 252 | 369 | 431 | 7.92e-14 | 71.2 |
MS.gene35405.t1 | AT1G49720 | 34.014 | 147 | 74 | 5 | 18 | 148 | 31 | 170 | 1.04e-13 | 70.9 |
MS.gene35405.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.56e-12 | 65.5 |
MS.gene35405.t1 | AT1G49720 | 34.014 | 147 | 74 | 5 | 18 | 148 | 31 | 170 | 1.04e-13 | 70.9 |
MS.gene35405.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.56e-12 | 65.5 |
MS.gene35405.t1 | AT1G49720 | 34.014 | 147 | 74 | 5 | 18 | 148 | 31 | 170 | 1.15e-13 | 70.9 |
MS.gene35405.t1 | AT1G49720 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 9.01e-12 | 65.1 |
MS.gene35405.t1 | AT3G19290 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.80e-13 | 70.1 |
MS.gene35405.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.82e-13 | 70.1 |
MS.gene35405.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.82e-13 | 70.1 |
MS.gene35405.t1 | AT3G19290 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.65e-13 | 69.3 |
MS.gene35405.t1 | AT2G17770 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 2.04e-12 | 65.1 |
MS.gene35405.t1 | AT4G34000 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.54e-12 | 66.2 |
MS.gene35405.t1 | AT1G45249 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 7.43e-12 | 65.5 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 2.75e-11 | 63.5 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.83e-11 | 62.8 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.83e-11 | 62.8 |
MS.gene35405.t1 | AT4G35900 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 5.97e-11 | 62.0 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.13e-11 | 62.4 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.13e-11 | 62.4 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.13e-11 | 62.4 |
MS.gene35405.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.13e-11 | 62.4 |
Find 45 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2.1:+15731427 | None:intergenic |
ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2.1:-15731868 | MS.gene35405:CDS |
TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2.1:-15730901 | MS.gene35405:intron |
CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2.1:+15731476 | None:intergenic |
TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2.1:+15731401 | None:intergenic |
CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2.1:-15731515 | MS.gene35405:CDS |
ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2.1:+15731465 | None:intergenic |
AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2.1:-15731727 | MS.gene35405:CDS |
CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2.1:+15731906 | None:intergenic |
GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2.1:-15730652 | MS.gene35405:CDS |
GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2.1:+15731772 | None:intergenic |
ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2.1:+15731856 | None:intergenic |
TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2.1:+15731687 | None:intergenic |
GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2.1:-15731605 | MS.gene35405:CDS |
GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2.1:+15730602 | None:intergenic |
AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2.1:+15731771 | None:intergenic |
ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2.1:+15731778 | None:intergenic |
CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2.1:-15731782 | MS.gene35405:CDS |
TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2.1:+15731623 | None:intergenic |
CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2.1:-15730651 | MS.gene35405:CDS |
TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2.1:+15731402 | None:intergenic |
TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2.1:+15731880 | None:intergenic |
TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2.1:+15731841 | None:intergenic |
ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2.1:-15731342 | MS.gene35405:intron |
ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2.1:-15731428 | MS.gene35405:CDS |
TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2.1:-15731738 | MS.gene35405:CDS |
AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2.1:+15731907 | None:intergenic |
GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2.1:-15730661 | MS.gene35405:CDS |
TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2.1:-15731560 | MS.gene35405:CDS |
CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2.1:+15731404 | None:intergenic |
CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2.1:+15731879 | None:intergenic |
CTCAAGAAGCAAGAAACACC+TGG | 0.571531 | 2.1:-15731641 | MS.gene35405:CDS |
AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2.1:-15730783 | MS.gene35405:CDS |
TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2.1:+15731861 | None:intergenic |
TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2.1:-15731960 | MS.gene35405:CDS |
AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2.1:-15730620 | MS.gene35405:CDS |
GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2.1:-15731439 | MS.gene35405:CDS |
GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2.1:-15730952 | MS.gene35405:CDS |
GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2.1:-15731891 | MS.gene35405:CDS |
GCAACATACCAAATGACAAG+TGG | 0.610150 | 2.1:-15731473 | MS.gene35405:CDS |
ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2.1:-15731458 | MS.gene35405:CDS |
CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2.1:+15731515 | None:intergenic |
TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2.1:+15731403 | None:intergenic |
TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2.1:-15730773 | MS.gene35405:intron |
AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2.1:-15730650 | MS.gene35405:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATCTATTTAAATCTGAAAT+AGG | - | chr2.1:15731779-15731798 | MS.gene35405:CDS | 15.0% |
!! | TACTTATTAATCACATAACT+TGG | - | chr2.1:15731308-15731327 | MS.gene35405:intron | 20.0% |
!!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2.1:15730902-15730921 | None:intergenic | 20.0% |
!!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2.1:15731595-15731614 | None:intergenic | 20.0% |
! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2.1:15731609-15731628 | MS.gene35405:CDS | 25.0% |
! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2.1:15730678-15730697 | None:intergenic | 25.0% |
! | AATGATGAAAAATCGAGAAT+CGG | - | chr2.1:15731213-15731232 | MS.gene35405:intron | 25.0% |
! | CAATACTGAAACTGAATATA+CGG | - | chr2.1:15731708-15731727 | MS.gene35405:CDS | 25.0% |
! | TAAAATGCTGAAACAATTTC+TGG | - | chr2.1:15731681-15731700 | MS.gene35405:CDS | 25.0% |
!! | AGATTTTAAATAACAGTCTG+TGG | - | chr2.1:15731490-15731509 | MS.gene35405:CDS | 25.0% |
!!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2.1:15731545-15731564 | MS.gene35405:CDS | 25.0% |
!!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2.1:15731544-15731563 | MS.gene35405:CDS | 25.0% |
CAAAGTTCTTGAAATCATCT+AGG | + | chr2.1:15730679-15730698 | None:intergenic | 30.0% | |
TAAAATCGTGTTTACCTTTG+CGG | - | chr2.1:15731352-15731371 | MS.gene35405:CDS | 30.0% | |
TCTACAACAATTAGATCAAG+AGG | - | chr2.1:15730622-15730641 | MS.gene35405:CDS | 30.0% | |
TTTCTTCTTTGAATTGTGGT+TGG | + | chr2.1:15730898-15730917 | None:intergenic | 30.0% | |
! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2.1:15730925-15730944 | None:intergenic | 30.0% |
!! | AATGACTTTTGAGGATTTCT+TGG | - | chr2.1:15730967-15730986 | MS.gene35405:intron | 30.0% |
!!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2.1:15730882-15730901 | None:intergenic | 30.0% |
AAATCCAACACAAATGTGAC+AGG | - | chr2.1:15731402-15731421 | MS.gene35405:CDS | 35.0% | |
AATCAGCAAAGGTTCAAAAG+GGG | - | chr2.1:15731932-15731951 | MS.gene35405:CDS | 35.0% | |
ACCAGAAAGAGGATAATTGA+TGG | - | chr2.1:15731154-15731173 | MS.gene35405:intron | 35.0% | |
ACCATCAATTATCCTCTTTC+TGG | + | chr2.1:15731158-15731177 | None:intergenic | 35.0% | |
AGAAAACTTCGGATGAAGTT+TGG | - | chr2.1:15730855-15730874 | MS.gene35405:intron | 35.0% | |
CAATCAGCAAAGGTTCAAAA+GGG | - | chr2.1:15731931-15731950 | MS.gene35405:CDS | 35.0% | |
TCCAGTTTGCAAGAAAACTT+CGG | - | chr2.1:15730844-15730863 | MS.gene35405:intron | 35.0% | |
TTATGTCACAGCCTAAATCA+CGG | + | chr2.1:15731516-15731535 | None:intergenic | 35.0% | |
TTGGATTTATCGCGAAATCA+AGG | + | chr2.1:15731390-15731409 | None:intergenic | 35.0% | |
! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2.1:15731022-15731041 | MS.gene35405:intron | 35.0% |
!! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2.1:15731549-15731568 | MS.gene35405:CDS | 35.0% |
AGACTGAATCACCAAGTTGT+TGG | + | chr2.1:15730814-15730833 | None:intergenic | 40.0% | |
ATCACTGGAACTCCAAATAC+TGG | + | chr2.1:15730729-15730748 | None:intergenic | 40.0% | |
ATGAGTTCCTAGCCAGTATT+TGG | - | chr2.1:15730714-15730733 | MS.gene35405:intron | 40.0% | |
CCACTGAATATTGCAAGTTC+TGG | - | chr2.1:15731067-15731086 | MS.gene35405:intron | 40.0% | |
CCAGAACTTGCAATATTCAG+TGG | + | chr2.1:15731070-15731089 | None:intergenic | 40.0% | |
GACTGAATCACCAAGTTGTT+GGG | + | chr2.1:15730813-15730832 | None:intergenic | 40.0% | |
GAGGATTTCTTGGTAAAAGC+TGG | - | chr2.1:15730977-15730996 | MS.gene35405:intron | 40.0% | |
GCAAAGAAAGCAATCAGCAA+AGG | - | chr2.1:15731921-15731940 | MS.gene35405:CDS | 40.0% | |
GCAACATACCAAATGACAAG+TGG | - | chr2.1:15731109-15731128 | MS.gene35405:intron | 40.0% | |
GCAATCAGCAAAGGTTCAAA+AGG | - | chr2.1:15731930-15731949 | MS.gene35405:CDS | 40.0% | |
GGCTTATACAATAGAGCTAG+AGG | - | chr2.1:15731630-15731649 | MS.gene35405:CDS | 40.0% | |
GTGATTTAGGCTGTGACATA+AGG | - | chr2.1:15731515-15731534 | MS.gene35405:CDS | 40.0% | |
TAGGAACTCATCCATGTTGA+GGG | + | chr2.1:15730705-15730724 | None:intergenic | 40.0% | |
TCCTCAAAAGTCATTTCTCC+AGG | + | chr2.1:15730962-15730981 | None:intergenic | 40.0% | |
TGAACCTGTCACATTTGTGT+TGG | + | chr2.1:15731409-15731428 | None:intergenic | 40.0% | |
TGAGAACAAGAGGAAACAAG+AGG | - | chr2.1:15731809-15731828 | MS.gene35405:CDS | 40.0% | |
TTCGCTCCAATAGAACTTCA+GGG | + | chr2.1:15731183-15731202 | None:intergenic | 40.0% | |
TTGTGTAGTAGCTTCATCAC+TGG | + | chr2.1:15730744-15730763 | None:intergenic | 40.0% | |
TTTCGCTCCAATAGAACTTC+AGG | + | chr2.1:15731184-15731203 | None:intergenic | 40.0% | |
! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2.1:15730958-15730977 | MS.gene35405:intron | 40.0% |
! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2.1:15731109-15731128 | None:intergenic | 40.0% |
! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2.1:15730845-15730864 | None:intergenic | 40.0% |
! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2.1:15730848-15730867 | None:intergenic | 40.0% |
! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2.1:15730841-15730860 | None:intergenic | 40.0% |
!!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2.1:15730656-15730675 | None:intergenic | 40.0% |
AAAGTCTGTGACCGTGATTG+AGG | + | chr2.1:15731433-15731452 | None:intergenic | 45.0% | |
AATCAAGCTCAAGCACAACC+TGG | - | chr2.1:15731962-15731981 | MS.gene35405:CDS | 45.0% | |
ACTCAGCTCCACTTGTCATT+TGG | + | chr2.1:15731120-15731139 | None:intergenic | 45.0% | |
ATCACCAAGTTGTTGGGAAC+TGG | + | chr2.1:15730807-15730826 | None:intergenic | 45.0% | |
CTAGGAACTCATCCATGTTG+AGG | + | chr2.1:15730706-15730725 | None:intergenic | 45.0% | |
CTCAAGAAGCAAGAAACACC+TGG | - | chr2.1:15730941-15730960 | MS.gene35405:CDS | 45.0% | |
GAACTTTGACTCCCTCAACA+TGG | - | chr2.1:15730691-15730710 | MS.gene35405:intron | 45.0% | |
TCGCTCCAATAGAACTTCAG+GGG | + | chr2.1:15731182-15731201 | None:intergenic | 45.0% | |
! | GCAAACGTTACGGACTATCA+CGG | + | chr2.1:15731585-15731604 | None:intergenic | 45.0% |
! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2.1:15730842-15730861 | None:intergenic | 45.0% |
! | TGGAACTCCAAATACTGGCT+AGG | + | chr2.1:15730724-15730743 | None:intergenic | 45.0% |
! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2.1:15731327-15731346 | MS.gene35405:intron | 45.0% |
ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2.1:15731124-15731143 | MS.gene35405:intron | 50.0% | |
ACAGTCTGTGGCCGTGATTT+AGG | - | chr2.1:15731502-15731521 | MS.gene35405:CDS | 50.0% | |
AGGCTGAAGCTGAGAACAAG+AGG | - | chr2.1:15731799-15731818 | MS.gene35405:CDS | 50.0% | |
CACACCAGTTCCCAACAACT+TGG | - | chr2.1:15730800-15730819 | MS.gene35405:intron | 50.0% | |
CGCTCCAATAGAACTTCAGG+GGG | + | chr2.1:15731181-15731200 | None:intergenic | 50.0% | |
GACAGGTTCAGCCTCAATCA+CGG | - | chr2.1:15731419-15731438 | MS.gene35405:CDS | 50.0% | |
GGATTGTGAAACGACCGCAA+AGG | + | chr2.1:15731369-15731388 | None:intergenic | 50.0% | |
TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2.1:15731174-15731193 | MS.gene35405:intron | 50.0% | |
ACGTTCTCGAGCAAGACGTC+AGG | - | chr2.1:15731240-15731259 | MS.gene35405:intron | 55.0% | |
GTGGAGCTGCTACCAGAAAG+AGG | - | chr2.1:15731143-15731162 | MS.gene35405:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 15730617 | 15731987 | 15730617 | ID=MS.gene35405 |
chr2.1 | mRNA | 15730617 | 15731987 | 15730617 | ID=MS.gene35405.t1;Parent=MS.gene35405 |
chr2.1 | exon | 15731343 | 15731987 | 15731343 | ID=MS.gene35405.t1.exon1;Parent=MS.gene35405.t1 |
chr2.1 | CDS | 15731343 | 15731987 | 15731343 | ID=cds.MS.gene35405.t1;Parent=MS.gene35405.t1 |
chr2.1 | exon | 15730902 | 15730973 | 15730902 | ID=MS.gene35405.t1.exon2;Parent=MS.gene35405.t1 |
chr2.1 | CDS | 15730902 | 15730973 | 15730902 | ID=cds.MS.gene35405.t1;Parent=MS.gene35405.t1 |
chr2.1 | exon | 15730774 | 15730803 | 15730774 | ID=MS.gene35405.t1.exon3;Parent=MS.gene35405.t1 |
chr2.1 | CDS | 15730774 | 15730803 | 15730774 | ID=cds.MS.gene35405.t1;Parent=MS.gene35405.t1 |
chr2.1 | exon | 15730617 | 15730688 | 15730617 | ID=MS.gene35405.t1.exon4;Parent=MS.gene35405.t1 |
chr2.1 | CDS | 15730617 | 15730688 | 15730617 | ID=cds.MS.gene35405.t1;Parent=MS.gene35405.t1 |
Gene Sequence |
Protein sequence |