AlfalfaGEDB | MS.gene35429

M. sativa cultivar XinJiangDaYe / MS.gene35429

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35429.t1	XP_003596841.1	89	254	23	4	1	254	1	249	6.90E-127	463.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35429.t1	Q9FMR3	54.0	250	89	5	7	253	8	234	1.2e-66	254.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35429.t1	G7IHF4	89.0	254	23	4	1	254	1	249	4.9e-127	463.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene35429.t1	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35429.t1	MTR_2g086690	88.583	254	24	4	1	254	1	249	2.14e-163	452
MS.gene35429.t1	MTR_4g052620	60.150	266	87	8	1	253	1	260	5.76e-104	302
MS.gene35429.t1	MTR_7g105170	46.970	264	118	6	1	254	1	252	1.68e-77	235
MS.gene35429.t1	MTR_4g075980	43.103	174	79	6	6	175	17	174	5.42e-38	135
MS.gene35429.t1	MTR_4g134460	44.099	161	75	4	6	164	56	203	6.38e-38	137
MS.gene35429.t1	MTR_6g011860	41.954	174	87	6	1	167	12	178	1.94e-37	135
MS.gene35429.t1	MTR_6g477900	36.275	204	118	5	5	206	7	200	1.80e-36	129
MS.gene35429.t1	MTR_8g059170	46.795	156	75	5	5	160	15	162	2.42e-36	131
MS.gene35429.t1	MTR_5g041940	45.223	157	78	5	5	160	4	153	2.89e-36	129
MS.gene35429.t1	MTR_1g096430	44.654	159	73	7	5	160	8	154	5.40e-36	130

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35429.t1	AT5G22380	54.000	250	89	5	7	253	8	234	3.31e-85	254
MS.gene35429.t1	AT3G44350	51.190	252	109	5	2	253	3	240	6.04e-83	248
MS.gene35429.t1	AT3G44350	56.875	160	66	2	2	161	3	159	5.17e-61	189
MS.gene35429.t1	AT4G17980	46.835	158	74	6	5	159	7	157	4.10e-39	137
MS.gene35429.t1	AT4G17980	46.835	158	74	6	5	159	7	157	6.21e-39	137
MS.gene35429.t1	AT2G02450	43.949	157	73	4	6	160	53	196	2.07e-38	138
MS.gene35429.t1	AT2G02450	43.949	157	73	4	6	160	53	196	3.12e-38	138
MS.gene35429.t1	AT2G17040	42.105	171	79	6	6	172	8	162	6.39e-38	134
MS.gene35429.t1	AT3G15500	47.468	158	69	6	5	160	15	160	3.37e-37	133
MS.gene35429.t1	AT3G17730	38.144	194	102	6	5	196	7	184	4.18e-37	131

Showing 1 to 10 of 141 entries

Previous1 2 3 4 5…15Next

Find 75 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTATCAACTTCCCACT+CGG	0.573290	2.1:-15513743	MS.gene35429:CDS
AACAAGTGCTCATCAACAAG+TGG	0.605093	2.1:-15513785	MS.gene35429:CDS
AACTTATCAACTTCCCACTC+GGG	0.587994	2.1:-15513742	MS.gene35429:CDS
AATATGGAGGATTCCCCACC+TGG	0.538171	2.1:-15515528	MS.gene35429:CDS
AATTGTGTTACGTACTTGGA+AGG	0.510602	2.1:+15515376	None:intergenic
ACAACAAAGTTATTGGAATA+AGG	0.320903	2.1:-15514478	MS.gene35429:CDS
ACCATTAGAGGGGCCAAAGA+CGG	0.556738	2.1:-15513833	MS.gene35429:CDS
ACTTCCCACTCGGGAGAGGT+AGG	0.537886	2.1:-15513733	MS.gene35429:CDS
AGACAAGAGAGAGAGTTGAG+TGG	0.675775	2.1:-15514575	MS.gene35429:CDS
AGTTGTTCCCATTCCCAAAG+AGG	0.523806	2.1:+15513619	None:intergenic

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATACCTGTCATTGATATCAA+TGG	-	chr2.1:15513717-15513736	MS.gene35429:CDS	30.0%
GAATGATGTACCAAATAATG+GGG	-	chr2.1:15515472-15515491	MS.gene35429:CDS	30.0%
GGAATGATGTACCAAATAAT+GGG	-	chr2.1:15515471-15515490	MS.gene35429:CDS	30.0%
TATTGGAATAAGGAAAACCA+TGG	-	chr2.1:15514663-15514682	MS.gene35429:intron	30.0%
TCTATCTATAAGTAGTGTCA+TGG	-	chr2.1:15514007-15514026	MS.gene35429:intron	30.0%
TGGAATGATGTACCAAATAA+TGG	-	chr2.1:15515470-15515489	MS.gene35429:CDS	30.0%
TTAGTTAGAACCCAAATTGT+AGG	-	chr2.1:15514367-15514386	MS.gene35429:CDS	30.0%
AAACACGATCCAAAAAGGAA+GGG	+	chr2.1:15514860-15514879	None:intergenic	35.0%
AAACTTATCAACTTCCCACT+CGG	-	chr2.1:15515388-15515407	MS.gene35429:intron	35.0%
AATTGTGTTACGTACTTGGA+AGG	+	chr2.1:15513758-15513777	None:intergenic	35.0%

Showing 1 to 10 of 139 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	15513606	15515547	15513606	ID=MS.gene35429
chr2.1	mRNA	15513606	15515547	15513606	ID=MS.gene35429.t1;Parent=MS.gene35429
chr2.1	exon	15515391	15515547	15515391	ID=MS.gene35429.t1.exon1;Parent=MS.gene35429.t1
chr2.1	CDS	15515391	15515547	15515391	ID=cds.MS.gene35429.t1;Parent=MS.gene35429.t1
chr2.1	exon	15514364	15514653	15514364	ID=MS.gene35429.t1.exon2;Parent=MS.gene35429.t1
chr2.1	CDS	15514364	15514653	15514364	ID=cds.MS.gene35429.t1;Parent=MS.gene35429.t1
chr2.1	exon	15513606	15513923	15513606	ID=MS.gene35429.t1.exon3;Parent=MS.gene35429.t1
chr2.1	CDS	15513606	15513923	15513606	ID=cds.MS.gene35429.t1;Parent=MS.gene35429.t1

Gene Sequence

>MS.gene35429

ATGGAGGATTCCCCACCTGGTTTTCGTTTCTATCCTACAGAAGAAGAGCTAGTTGGCTTCTATCTACACAACCAGCTGGAAGGACAAAAGCATGAAGACATAAACAAAATCATACCTGTCATTGATATCAATGGCAAAGAGCCATGGAACCTTCCAAGTACGTAACACAATTTTTTTACGTGACTCATTCATTTCTTCATGATATATATCACTTTTATAATTTTGATTGTCTCAAAATAATTCTCATTCAAAATATACTTCAATATCTCACAACACTAGAAATATAAAATTAGCCATGAAGAAAAAAATTATCTCAAATTCTCCCGTTACTTAATCTAGTGATTTTATATTTGACATGCATACTCTATCGTTTTTTTTTTTTTTTGAGGGAACATGCATACTCTATCTATAAGTAGTGTCATGGTAAGTTAATATTTTTCATATACTATCAGAAAAAAGTTAATATTTTTCATAGATTCCCTAATGGGCCTAAATATGTCTAAGATTGACACCGTCATTCATGTAGATATTTTCTATGATATTATACCACATGTAGGGTTGTATATGAGGCAGAGCGAAGAGGGCGACCGTCCTATACCCCAAAAAATAAGTACGAAATTTGGGCCCCAATTTTTTTTTAGGGGTTTATTAGGCCCTAAAAAAATTGCTTAGTTTTTTATATCAAATTTTATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGTTAGAACCCAAATTGTAGGTTCGTCCTAGGCCACCAAAATCTCAGAAACGGCCCCTGAACACATGTGAGAGTAATATCTTACTAAAATATGATCGATGACAATGTAAATAAACTCTTGCTTGTAATCAGCATTTGCAGGGGAGAGATGTCGTGGAGACACAGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGTTGAGTGGTGGAAGACCAAACAGAACAACATCTTGTGGGTATTGGAAAGCTACGGGTTCTCCTAGCTACGTTTACTCTTCTAACAACAAAGTTATTGGAATAAGGAAAACCATGGTGTTTTACATAGGAAAAGCTCCATCTGGAAGGAAAACAAAATGGAAGATGCATGAATATAAAGCCATTGAACCATCTGATCCATCCAATACAAACCCTCCTAAGGTATATTTGAAAAAGTAAAACTCGTCAGCATGATTAATATCAATCATGCTAATGAGTTCTTATTTTTCCCTTCCTTTTTGGATCGTGTTTGAGGTTTGCATCGGTTATGTTTGACCGTGATTCTCAAATAATATGTCACATATTGTAGTGTGATTCCACCTTAAAATATTTATCATAAATTTATAAACTTAAAAAGAGATCCATGACAACAATCAAGATTGTGACGTCATAATTTCAAAAATTTGTGTCTACAATGATACTAAATGCGATTAAAGTCATATTGATCATATTTGAATGTGATTTTATACAATATACAATAAATTTTGACGCGGTCTTAATATGATCACGATATAAAATCGTAGTCATAAATTCACATGTTATCATAATCTTAATTTTTTTAATTTTTTAATTGATCAATAATTTATTTTGGTGTGTTGTAGCTGCGACACGAAATCAGCTTGTGTCGCGTTTATGTGATATCGGGAAGCTTTAGTTCATTTGATCGAAGACCATTAGAGGGGCCAAAGACGGAGTTACAACTTGATCATGTTGCTTCAACAAGTGCTCATCAACAAGTGGTAGCAGAGCTCGATGGATCAAACTTATCAACTTCCCACTCGGGAGAGGTAGGGAGAGACCCTGATGCTGCTCTTAATATTGGAGGGTCAAGTGGCACGAATTGGAATGATGTACCAAATAATGGGGTTGATGAACCTGACGAGCCTCTTTGGGAATGGGAACAACTAAATTGGATCTAA

Protein sequence

>MS.gene35429.t1

MEDSPPGFRFYPTEEELVGFYLHNQLEGQKHEDINKIIPVIDINGKEPWNLPTFAGERCRGDTEQWFFFSPRQERELSGGRPNRTTSCGYWKATGSPSYVYSSNNKVIGIRKTMVFYIGKAPSGRKTKWKMHEYKAIEPSDPSNTNPPKLRHEISLCRVYVISGSFSSFDRRPLEGPKTELQLDHVASTSAHQQVVAELDGSNLSTSHSGEVGRDPDAALNIGGSSGTNWNDVPNNGVDEPDEPLWEWEQLNWI