AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35634

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35634.t1 MTR_3g073560 94.828 348 7 1 1 337 1 348 0.0 676
MS.gene35634.t1 MTR_5g060950 64.943 348 107 4 1 333 1 348 1.02e-154 438
MS.gene35634.t1 MTR_3g087940 49.713 348 159 3 1 334 14 359 1.52e-116 342
MS.gene35634.t1 MTR_8g091650 46.821 346 166 5 1 334 15 354 7.54e-99 296
MS.gene35634.t1 MTR_7g089800 47.416 329 161 3 13 334 98 421 4.83e-97 294
MS.gene35634.t1 MTR_7g089800 47.416 329 161 3 13 334 127 450 1.45e-96 294
MS.gene35634.t1 MTR_8g040120 50.331 302 139 2 42 336 169 466 3.74e-96 293
MS.gene35634.t1 MTR_8g091650 51.079 278 135 1 57 334 5 281 3.20e-93 280
MS.gene35634.t1 MTR_8g091650 42.175 377 174 4 1 334 15 390 2.97e-92 281
MS.gene35634.t1 MTR_2g086420 50.174 287 136 3 54 340 193 472 1.72e-88 275
MS.gene35634.t1 MTR_2g086420 50.174 287 136 3 54 340 194 473 1.97e-88 274
MS.gene35634.t1 MTR_7g092750 45.875 303 156 3 40 334 58 360 1.50e-84 260
MS.gene35634.t1 MTR_7g092750 45.875 303 156 3 40 334 159 461 1.68e-83 261
MS.gene35634.t1 MTR_4g053250 46.758 293 146 2 48 340 183 465 2.71e-82 258
MS.gene35634.t1 MTR_5g054900 44.138 290 151 2 52 334 66 351 7.64e-81 250
MS.gene35634.t1 MTR_5g054900 44.138 290 151 2 52 334 147 432 7.89e-80 250
MS.gene35634.t1 MTR_1g111310 43.894 303 160 4 39 334 406 705 1.04e-77 252
MS.gene35634.t1 MTR_1g111310 42.373 295 160 2 39 330 39 326 3.21e-69 229
MS.gene35634.t1 MTR_5g054900 43.448 290 149 3 52 334 66 347 3.90e-77 241
MS.gene35634.t1 MTR_5g054900 43.448 290 149 3 52 334 177 458 1.59e-75 240
MS.gene35634.t1 MTR_7g092750 41.914 303 142 4 40 334 159 435 4.44e-69 223
MS.gene35634.t1 MTR_0126s0080 47.390 249 123 2 49 289 211 459 5.79e-66 215
MS.gene35634.t1 MTR_3g044820 42.308 182 96 3 39 212 30 210 4.67e-43 148
MS.gene35634.t1 MTR_1g090370 33.168 202 109 7 128 321 37 220 7.85e-18 81.6
MS.gene35634.t1 MTR_1g111320 55.556 63 28 0 39 101 131 193 1.79e-14 72.0
MS.gene35634.t1 MTR_2g076140 29.082 196 103 5 143 318 23 202 4.15e-14 71.2
MS.gene35634.t1 MTR_7g068860 29.050 179 111 4 160 326 45 219 1.15e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35634.t1 AT1G22070 49.448 362 155 2 1 334 19 380 9.18e-125 363
MS.gene35634.t1 AT1G77920 50.416 361 140 6 1 334 16 364 4.79e-118 346
MS.gene35634.t1 AT5G10030 49.275 345 162 3 1 332 14 358 6.07e-113 333
MS.gene35634.t1 AT5G10030 49.275 345 162 3 1 332 14 358 6.07e-113 333
MS.gene35634.t1 AT5G10030 49.275 345 162 3 1 332 14 358 6.07e-113 333
MS.gene35634.t1 AT5G10030 49.275 345 162 3 1 332 14 358 6.07e-113 333
MS.gene35634.t1 AT5G10030 49.275 345 162 3 1 332 14 358 6.07e-113 333
MS.gene35634.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.70e-111 329
MS.gene35634.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.70e-111 329
MS.gene35634.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.70e-111 329
MS.gene35634.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.70e-111 329
MS.gene35634.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.70e-111 329
MS.gene35634.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.70e-111 329
MS.gene35634.t1 AT5G65210 53.472 288 134 0 45 332 5 292 5.26e-107 315
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 7 301 1.18e-91 276
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.58e-91 276
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.58e-91 276
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.58e-91 276
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.58e-91 276
MS.gene35634.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.10e-91 276
MS.gene35634.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.10e-91 276
MS.gene35634.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.10e-91 276
MS.gene35634.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.10e-91 276
MS.gene35634.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.10e-91 276
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 28 322 4.18e-91 276
MS.gene35634.t1 AT5G06960 49.827 289 135 2 52 334 24 308 7.25e-91 275
MS.gene35634.t1 AT5G06960 49.827 289 135 2 52 334 44 328 1.00e-90 275
MS.gene35634.t1 AT5G06960 49.827 289 135 2 52 334 44 328 1.00e-90 275
MS.gene35634.t1 AT3G12250 48.161 299 145 2 42 334 59 353 1.41e-90 275
MS.gene35634.t1 AT1G08320 45.779 308 152 3 37 340 37 333 1.48e-88 270
MS.gene35634.t1 AT1G08320 45.779 308 152 3 37 340 37 333 1.48e-88 270
MS.gene35634.t1 AT1G08320 45.779 308 152 3 37 340 161 457 2.77e-86 268
MS.gene35634.t1 AT1G08320 45.779 308 152 3 37 340 161 457 2.77e-86 268
MS.gene35634.t1 AT1G08320 45.779 308 152 3 37 340 161 457 2.77e-86 268
MS.gene35634.t1 AT5G06839 42.817 355 164 7 1 334 120 456 4.89e-82 257
MS.gene35634.t1 AT5G06839 45.902 305 142 4 49 334 113 413 7.45e-82 255
MS.gene35634.t1 AT5G06839 45.752 306 142 4 49 334 113 414 1.29e-81 254
MS.gene35634.t1 AT1G68640 43.581 296 155 3 49 336 161 452 4.55e-75 238
MS.gene35634.t1 AT3G14880 23.077 234 141 5 122 330 6 225 1.34e-11 64.3
MS.gene35634.t1 AT1G58330 26.257 179 119 4 160 326 46 223 3.05e-11 62.8

Find 81 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATTTGCTGCATTTAA+TGG 0.104219 3.3:+63607500 None:intergenic
TTGAAATTGAATACGGAAAT+TGG 0.106575 3.3:-63608004 MS.gene35634:CDS
TTCGTACTATTTGTTCTCTA+TGG 0.263825 3.3:-63607107 MS.gene35634:CDS
CTAGGGGCTTGATTGCTCTT+GGG 0.318816 3.3:-63607146 MS.gene35634:CDS
GCTAGGGGCTTGATTGCTCT+TGG 0.321096 3.3:-63607147 MS.gene35634:CDS
TCCCATAAAACTGGTATCTA+AGG 0.348603 3.3:+63608138 None:intergenic
CACCCCACATGCTAACTTGC+TGG 0.350263 3.3:+63609061 None:intergenic
CACCTAGGATTACTCCTTAG+AGG 0.368350 3.3:-63607056 None:intergenic
GAAAAGCCGGGAGCGCAAAA+AGG 0.370740 3.3:-63608600 MS.gene35634:intron
ATGCAATTGGAGCTGGAGAT+TGG 0.373155 3.3:-63608308 MS.gene35634:CDS
TGAAATTGAATACGGAAATT+GGG 0.386776 3.3:-63608003 MS.gene35634:CDS
ACAAGAGACTACAAACAATA+AGG 0.391876 3.3:-63608775 MS.gene35634:intron
TTCAGATGATCCCATAAAAC+TGG 0.394744 3.3:+63608129 None:intergenic
TCCTTGTGAAAGAGCATCTT+CGG 0.402772 3.3:+63607568 None:intergenic
CAGATTGAAGCTCATGCAAT+TGG 0.405773 3.3:-63608321 MS.gene35634:CDS
GTTGCGTTTGAAATTGAATA+CGG 0.408058 3.3:-63608011 MS.gene35634:CDS
AAATAAACTCCAGGAGAGTC+TGG 0.422863 3.3:-63607543 MS.gene35634:CDS
TGAGCTCTTTGTTCCGCCTA+TGG 0.425624 3.3:+63607970 None:intergenic
TGCAATTGGAGCTGGAGATT+GGG 0.428890 3.3:-63608307 MS.gene35634:CDS
TCAGCTTCTGAATGATCCCT+TGG 0.431043 3.3:+63608798 None:intergenic
AGTAATCCTAGGTGATATCT+TGG 0.431819 3.3:+63607065 None:intergenic
GTCCGAAGTGCAGCTTCGTC+TGG 0.433393 3.3:-63607925 MS.gene35634:CDS
ATGGAATAAATGCCATGTCT+TGG 0.457231 3.3:+63607519 None:intergenic
GTCTACACACCAAGCTGCTA+GGG 0.462470 3.3:-63607163 MS.gene35634:CDS
CCATTAAATGCAGCAAATCA+TGG 0.469470 3.3:-63607500 MS.gene35634:CDS
GGTGACAGCTTTAAAGTTGA+AGG 0.469579 3.3:-63609042 MS.gene35634:CDS
GTCCACAGGCAGATCATCTC+AGG 0.470981 3.3:-63607218 MS.gene35634:intron
TAGGGGCTTGATTGCTCTTG+GGG 0.473329 3.3:-63607145 MS.gene35634:CDS
TGTCTTGGACCAGACTCTCC+TGG 0.474340 3.3:+63607534 None:intergenic
CACATGCTAACTTGCTGGAA+TGG 0.476844 3.3:+63609066 None:intergenic
TAGCAGCTTGGTGTGTAGAC+AGG 0.495952 3.3:+63607166 None:intergenic
ATCCTCCGATCCATAGGAAA+AGG 0.500037 3.3:+63607790 None:intergenic
CCATAGGAAAAGGCGCTCTA+CGG 0.507714 3.3:+63607800 None:intergenic
GATTGGGAGAGCAAGAAAGC+AGG 0.518438 3.3:-63608291 MS.gene35634:intron
TATTGCTATAGACAAATTTG+AGG 0.520557 3.3:-63607465 MS.gene35634:CDS
TAGTTGCAGGGTATTTGCAC+AGG 0.526630 3.3:-63608166 MS.gene35634:intron
TGTCTACACACCAAGCTGCT+AGG 0.531973 3.3:-63607164 MS.gene35634:CDS
TGTACATTTAGAAGTTGTGA+TGG 0.532177 3.3:+63607762 None:intergenic
GAAGCTCATGCAATTGGAGC+TGG 0.532336 3.3:-63608315 MS.gene35634:CDS
GAGAGGCTGCTAAGAAAAGC+CGG 0.533392 3.3:-63608613 MS.gene35634:CDS
AATGAAAACGGATGCTGCAA+AGG 0.533573 3.3:-63607862 MS.gene35634:CDS
GATCCCCTCTATTTAATCTC+CGG 0.535169 3.3:-63607837 MS.gene35634:CDS
CAATCAAGCCCCTAGCAGCT+TGG 0.546448 3.3:+63607154 None:intergenic
TTCCTCTAAGGAGTAATCCT+AGG 0.546737 3.3:+63607054 None:intergenic
CTTGGTGTGTAGACAGGATG+CGG 0.550201 3.3:+63607172 None:intergenic
TTACTGTTCACTAGTAACAT+TGG 0.550321 3.3:+63608997 None:intergenic
ATTGCTATAGACAAATTTGA+GGG 0.550505 3.3:-63607464 MS.gene35634:CDS
GACAAATTTGAGGGACTCGA+AGG 0.552796 3.3:-63607455 MS.gene35634:CDS
GTACATTTAGAAGTTGTGAT+GGG 0.555666 3.3:+63607763 None:intergenic
ACACACCGGAGATTAAATAG+AGG 0.563190 3.3:+63607832 None:intergenic
ATTGGGTTGACGAGAACCAT+AGG 0.567572 3.3:-63607986 MS.gene35634:CDS
GGTGATATCTTGGAATCGAA+TGG 0.569812 3.3:+63607075 None:intergenic
TCTATTTAATCTCCGGTGTG+TGG 0.577155 3.3:-63607830 MS.gene35634:CDS
AGGAAAAGGCGCTCTACGGA+TGG 0.579044 3.3:+63607804 None:intergenic
TCAGACAAAGGCTCAAGTTG+TGG 0.581334 3.3:+63607638 None:intergenic
CACACCGGAGATTAAATAGA+GGG 0.585253 3.3:+63607833 None:intergenic
GAATGATCCCTTGGTTCATG+AGG 0.586065 3.3:+63608807 None:intergenic
CATTCCAGCAAGTTAGCATG+TGG 0.586492 3.3:-63609065 MS.gene35634:CDS
AGAGGCTGCTAAGAAAAGCC+GGG 0.588682 3.3:-63608612 MS.gene35634:CDS
CAGCCTCTCGATTCTGTGCG+AGG 0.589111 3.3:+63608627 None:intergenic
ACAAGGACTAAATAAACTCC+AGG 0.589120 3.3:-63607552 MS.gene35634:CDS
GGCGAGATCCTCCGATCCAT+AGG 0.593085 3.3:+63607784 None:intergenic
GAGTGTCTTGAATCATTACT+CGG 0.593826 3.3:-63607895 MS.gene35634:CDS
TTCCAGCAAGTTAGCATGTG+GGG 0.599412 3.3:-63609063 MS.gene35634:CDS
AACCAGACGAAGCTGCACTT+CGG 0.601003 3.3:+63607923 None:intergenic
GCCGAAGATGCTCTTTCACA+AGG 0.601136 3.3:-63607569 MS.gene35634:CDS
AATATATTCCTCATGAACCA+AGG 0.603855 3.3:-63608815 MS.gene35634:CDS
AACATTTGTTCATCAGACAA+AGG 0.607845 3.3:+63607626 None:intergenic
GGAGAGTCTGGTCCAAGACA+TGG 0.608703 3.3:-63607531 MS.gene35634:CDS
AGCAAATCATGGAATTCAGA+TGG 0.610088 3.3:-63607489 MS.gene35634:CDS
TTGGTGTGTAGACAGGATGC+GGG 0.620480 3.3:+63607173 None:intergenic
TACGGATGGTTTCCACACAC+CGG 0.623678 3.3:+63607818 None:intergenic
ATATATTCCTCATGAACCAA+GGG 0.628071 3.3:-63608814 MS.gene35634:CDS
GACAGCTTTAAAGTTGAAGG+TGG 0.628685 3.3:-63609039 MS.gene35634:CDS
ATTCCAGCAAGTTAGCATGT+GGG 0.642837 3.3:-63609064 MS.gene35634:CDS
TCATCTGAAACAATTAACCC+AGG 0.648000 3.3:-63608115 MS.gene35634:intron
TCGATTCCAAGATATCACCT+AGG 0.670756 3.3:-63607071 MS.gene35634:CDS
TCTACACACCAAGCTGCTAG+GGG 0.671811 3.3:-63607162 MS.gene35634:CDS
ACGCCTCGCACAGAATCGAG+AGG 0.704571 3.3:-63608630 MS.gene35634:CDS
ACACCGGAGATTAAATAGAG+GGG 0.728769 3.3:+63607834 None:intergenic
GGGTTGACGAGAACCATAGG+CGG 0.739081 3.3:-63607983 MS.gene35634:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTAATATAATTTACTTAT+AGG - chr3.3:63607560-63607579 MS.gene35634:CDS 15.0%
!! AATCAAAATGTCACAATTTA+TGG + chr3.3:63607409-63607428 None:intergenic 20.0%
!! TAGCGAATTAGATTAAAAAT+TGG - chr3.3:63608414-63608433 MS.gene35634:intron 20.0%
!! TCAATTTGATAAATTGTGAA+TGG - chr3.3:63608891-63608910 MS.gene35634:intron 20.0%
!!! GGTAAATAAATTGTTAGTTT+TGG + chr3.3:63607879-63607898 None:intergenic 20.0%
!!! GTTTTATCACAAAACATTTT+TGG + chr3.3:63607437-63607456 None:intergenic 20.0%
! AAAATTTCTACTTTAGTTGC+AGG - chr3.3:63607961-63607980 MS.gene35634:CDS 25.0%
! AAATTTCTACTTTAGTTGCA+GGG - chr3.3:63607962-63607981 MS.gene35634:CDS 25.0%
! AACTAAGTTAGTTAGTTAGT+TGG + chr3.3:63607718-63607737 None:intergenic 25.0%
! AAGCATATGTTTCATATTTG+TGG + chr3.3:63607761-63607780 None:intergenic 25.0%
! ATATAAATCAGAAGTGAAGA+TGG + chr3.3:63607900-63607919 None:intergenic 25.0%
! ATTGCTATAGACAAATTTGA+GGG - chr3.3:63608676-63608695 MS.gene35634:intron 25.0%
! CTAGTTATAATTTGAACATC+AGG + chr3.3:63608789-63608808 None:intergenic 25.0%
! TATTGCTATAGACAAATTTG+AGG - chr3.3:63608675-63608694 MS.gene35634:intron 25.0%
! TGAAATTGAATACGGAAATT+GGG - chr3.3:63608137-63608156 MS.gene35634:CDS 25.0%
! TTGAAATTGAATACGGAAAT+TGG - chr3.3:63608136-63608155 MS.gene35634:CDS 25.0%
AACATTTGTTCATCAGACAA+AGG + chr3.3:63608517-63608536 None:intergenic 30.0%
AATATATTCCTCATGAACCA+AGG - chr3.3:63607325-63607344 MS.gene35634:intron 30.0%
ACAAGAGACTACAAACAATA+AGG - chr3.3:63607365-63607384 MS.gene35634:intron 30.0%
ATATATTCCTCATGAACCAA+GGG - chr3.3:63607326-63607345 MS.gene35634:intron 30.0%
ATATCAAGAATCACAAACCT+GGG + chr3.3:63608045-63608064 None:intergenic 30.0%
CCAAGAAATTTGAATCAACT+AGG - chr3.3:63608732-63608751 MS.gene35634:intron 30.0%
GAACAATGTAATGATGCATA+TGG + chr3.3:63608873-63608892 None:intergenic 30.0%
GTACATTTAGAAGTTGTGAT+GGG + chr3.3:63608380-63608399 None:intergenic 30.0%
TAATGATTAGTGATTCGTTG+AGG + chr3.3:63608451-63608470 None:intergenic 30.0%
TGTACATTTAGAAGTTGTGA+TGG + chr3.3:63608381-63608400 None:intergenic 30.0%
TTACTGTTCACTAGTAACAT+TGG + chr3.3:63607146-63607165 None:intergenic 30.0%
TTCGTACTATTTGTTCTCTA+TGG - chr3.3:63609033-63609052 MS.gene35634:CDS 30.0%
! CCTAGTTGATTCAAATTTCT+TGG + chr3.3:63608735-63608754 None:intergenic 30.0%
! GGATCTTTTCAGAATGAAAA+CGG - chr3.3:63608266-63608285 MS.gene35634:intron 30.0%
! GTTGCGTTTGAAATTGAATA+CGG - chr3.3:63608129-63608148 MS.gene35634:CDS 30.0%
! TGTTCCTTTGTTGTGTAAAA+CGG - chr3.3:63607598-63607617 MS.gene35634:CDS 30.0%
!! AACTGTTCTATTGAGTTGAA+TGG + chr3.3:63607653-63607672 None:intergenic 30.0%
!! ACTGTTCTATTGAGTTGAAT+GGG + chr3.3:63607652-63607671 None:intergenic 30.0%
ACAAGGACTAAATAAACTCC+AGG - chr3.3:63608588-63608607 MS.gene35634:intron 35.0%
ACATATGCTTGATATTGTGC+AGG - chr3.3:63607771-63607790 MS.gene35634:CDS 35.0%
AGAGTCTGACTCATTTAATG+TGG - chr3.3:63607256-63607275 MS.gene35634:intron 35.0%
AGCAAATCATGGAATTCAGA+TGG - chr3.3:63608651-63608670 MS.gene35634:intron 35.0%
AGTAATCCTAGGTGATATCT+TGG + chr3.3:63609078-63609097 None:intergenic 35.0%
ATCTTTGTGTTCTGTTAACC+AGG - chr3.3:63608102-63608121 MS.gene35634:intron 35.0%
ATGGAATAAATGCCATGTCT+TGG + chr3.3:63608624-63608643 None:intergenic 35.0%
CCATTAAATGCAGCAAATCA+TGG - chr3.3:63608640-63608659 MS.gene35634:CDS 35.0%
GAGTGTCTTGAATCATTACT+CGG - chr3.3:63608245-63608264 MS.gene35634:intron 35.0%
GATATCAAGAATCACAAACC+TGG + chr3.3:63608046-63608065 None:intergenic 35.0%
GGTTGAGGAAATGAAAATTG+AGG - chr3.3:63607619-63607638 MS.gene35634:CDS 35.0%
TCCCATAAAACTGGTATCTA+AGG + chr3.3:63608005-63608024 None:intergenic 35.0%
TCTTTGTGTTCTGTTAACCA+GGG - chr3.3:63608103-63608122 MS.gene35634:intron 35.0%
TTCAGATGATCCCATAAAAC+TGG + chr3.3:63608014-63608033 None:intergenic 35.0%
! TCAACCGTTTTACACAACAA+AGG + chr3.3:63607605-63607624 None:intergenic 35.0%
! TCATCTGAAACAATTAACCC+AGG - chr3.3:63608025-63608044 MS.gene35634:intron 35.0%
! TTTGTTGTGTAAAACGGTTG+AGG - chr3.3:63607604-63607623 MS.gene35634:CDS 35.0%
!! CCATGATTTGCTGCATTTAA+TGG + chr3.3:63608643-63608662 None:intergenic 35.0%
!! GCCTTAGATACCAGTTTTAT+GGG - chr3.3:63608001-63608020 MS.gene35634:CDS 35.0%
!! TTTCTTGGTGTTACATTACC+TGG + chr3.3:63608720-63608739 None:intergenic 35.0%
AAATAAACTCCAGGAGAGTC+TGG - chr3.3:63608597-63608616 MS.gene35634:intron 40.0%
AATGAAAACGGATGCTGCAA+AGG - chr3.3:63608278-63608297 MS.gene35634:intron 40.0%
ACACACCGGAGATTAAATAG+AGG + chr3.3:63608311-63608330 None:intergenic 40.0%
ACACCGGAGATTAAATAGAG+GGG + chr3.3:63608309-63608328 None:intergenic 40.0%
ACTGTCATCCCAAAATGATG+AGG + chr3.3:63608818-63608837 None:intergenic 40.0%
ATTCCAGCAAGTTAGCATGT+GGG - chr3.3:63607076-63607095 MS.gene35634:CDS 40.0%
ATTTCAAACGCAACAATCCC+TGG + chr3.3:63608123-63608142 None:intergenic 40.0%
CACACCGGAGATTAAATAGA+GGG + chr3.3:63608310-63608329 None:intergenic 40.0%
CAGATTGAAGCTCATGCAAT+TGG - chr3.3:63607819-63607838 MS.gene35634:CDS 40.0%
CATCCCAAAATGATGAGGAA+GGG + chr3.3:63608813-63608832 None:intergenic 40.0%
GAACAGTAACACTACTAGCA+TGG - chr3.3:63607157-63607176 MS.gene35634:CDS 40.0%
GATCCCCTCTATTTAATCTC+CGG - chr3.3:63608303-63608322 MS.gene35634:CDS 40.0%
GGTGATATCTTGGAATCGAA+TGG + chr3.3:63609068-63609087 None:intergenic 40.0%
GTGTCTGTGACATTATGTGT+AGG - chr3.3:63607480-63607499 MS.gene35634:CDS 40.0%
TCATCCCAAAATGATGAGGA+AGG + chr3.3:63608814-63608833 None:intergenic 40.0%
TCGATTCCAAGATATCACCT+AGG - chr3.3:63609069-63609088 MS.gene35634:CDS 40.0%
TCTATTTAATCTCCGGTGTG+TGG - chr3.3:63608310-63608329 MS.gene35634:CDS 40.0%
! AGACCCTTCCTCATCATTTT+GGG - chr3.3:63608807-63608826 MS.gene35634:CDS 40.0%
! ATATTACCTTTTTGCGCTCC+CGG + chr3.3:63607549-63607568 None:intergenic 40.0%
! CGCCTTAGATACCAGTTTTA+TGG - chr3.3:63608000-63608019 MS.gene35634:CDS 40.0%
! TAGACCCTTCCTCATCATTT+TGG - chr3.3:63608806-63608825 MS.gene35634:CDS 40.0%
!! ACTCGAAGGTTTTGTAATCC+AGG - chr3.3:63608699-63608718 MS.gene35634:intron 40.0%
!! GACAGCTTTAAAGTTGAAGG+TGG - chr3.3:63607101-63607120 MS.gene35634:CDS 40.0%
!! GGTGACAGCTTTAAAGTTGA+AGG - chr3.3:63607098-63607117 MS.gene35634:CDS 40.0%
!! TCCTTGTGAAAGAGCATCTT+CGG + chr3.3:63608575-63608594 None:intergenic 40.0%
ATCCTCCGATCCATAGGAAA+AGG + chr3.3:63608353-63608372 None:intergenic 45.0%
ATGCAATTGGAGCTGGAGAT+TGG - chr3.3:63607832-63607851 MS.gene35634:CDS 45.0%
CACTACTAGCATGGAGAACA+AGG - chr3.3:63607166-63607185 MS.gene35634:CDS 45.0%
CATTCCAGCAAGTTAGCATG+TGG - chr3.3:63607075-63607094 MS.gene35634:CDS 45.0%
GAATGATCCCTTGGTTCATG+AGG + chr3.3:63607336-63607355 None:intergenic 45.0%
GACAAATTTGAGGGACTCGA+AGG - chr3.3:63608685-63608704 MS.gene35634:intron 45.0%
TCAGCTTCTGAATGATCCCT+TGG + chr3.3:63607345-63607364 None:intergenic 45.0%
TGCAATTGGAGCTGGAGATT+GGG - chr3.3:63607833-63607852 MS.gene35634:CDS 45.0%
TTCCAGCAAGTTAGCATGTG+GGG - chr3.3:63607077-63607096 MS.gene35634:CDS 45.0%
! GAATGGTTTGTGTTGTCCAC+AGG - chr3.3:63608908-63608927 MS.gene35634:intron 45.0%
! TAGTTGCAGGGTATTTGCAC+AGG - chr3.3:63607974-63607993 MS.gene35634:CDS 45.0%
! TCAGACAAAGGCTCAAGTTG+TGG + chr3.3:63608505-63608524 None:intergenic 45.0%
!! ATTGGGTTGACGAGAACCAT+AGG - chr3.3:63608154-63608173 MS.gene35634:CDS 45.0%
!! CACATGCTAACTTGCTGGAA+TGG + chr3.3:63607077-63607096 None:intergenic 45.0%
AACCAGACGAAGCTGCACTT+CGG + chr3.3:63608220-63608239 None:intergenic 50.0%
AGAGGCTGCTAAGAAAAGCC+GGG - chr3.3:63607528-63607547 MS.gene35634:CDS 50.0%
CTAGGGGCTTGATTGCTCTT+GGG - chr3.3:63608994-63609013 MS.gene35634:intron 50.0%
GAAGCTCATGCAATTGGAGC+TGG - chr3.3:63607825-63607844 MS.gene35634:CDS 50.0%
GAGAGGCTGCTAAGAAAAGC+CGG - chr3.3:63607527-63607546 MS.gene35634:CDS 50.0%
GATTGGGAGAGCAAGAAAGC+AGG - chr3.3:63607849-63607868 MS.gene35634:CDS 50.0%
GCCGAAGATGCTCTTTCACA+AGG - chr3.3:63608571-63608590 MS.gene35634:intron 50.0%
GTCTACACACCAAGCTGCTA+GGG - chr3.3:63608977-63608996 MS.gene35634:intron 50.0%
GTTGTGGCACAATGAGCTGT+AGG + chr3.3:63608489-63608508 None:intergenic 50.0%
TACGGATGGTTTCCACACAC+CGG + chr3.3:63608325-63608344 None:intergenic 50.0%
TAGGGGCTTGATTGCTCTTG+GGG - chr3.3:63608995-63609014 MS.gene35634:intron 50.0%
TCTACACACCAAGCTGCTAG+GGG - chr3.3:63608978-63608997 MS.gene35634:intron 50.0%
TGAGCTCTTTGTTCCGCCTA+TGG + chr3.3:63608173-63608192 None:intergenic 50.0%
TGTCTACACACCAAGCTGCT+AGG - chr3.3:63608976-63608995 MS.gene35634:intron 50.0%
TTGGTGTGTAGACAGGATGC+GGG + chr3.3:63608970-63608989 None:intergenic 50.0%
! CTTGGTGTGTAGACAGGATG+CGG + chr3.3:63608971-63608990 None:intergenic 50.0%
! GAGCGCCTTTTCCTATGGAT+CGG - chr3.3:63608345-63608364 MS.gene35634:CDS 50.0%
!! CCATAGGAAAAGGCGCTCTA+CGG + chr3.3:63608343-63608362 None:intergenic 50.0%
!! TAGCAGCTTGGTGTGTAGAC+AGG + chr3.3:63608977-63608996 None:intergenic 50.0%
CAATCAAGCCCCTAGCAGCT+TGG + chr3.3:63608989-63609008 None:intergenic 55.0%
GCTAGGGGCTTGATTGCTCT+TGG - chr3.3:63608993-63609012 MS.gene35634:intron 55.0%
GGAGAGTCTGGTCCAAGACA+TGG - chr3.3:63608609-63608628 MS.gene35634:CDS 55.0%
GGGTTGACGAGAACCATAGG+CGG - chr3.3:63608157-63608176 MS.gene35634:CDS 55.0%
GTCCACAGGCAGATCATCTC+AGG - chr3.3:63608922-63608941 MS.gene35634:intron 55.0%
GTGGCACAATGAGCTGTAGG+AGG + chr3.3:63608486-63608505 None:intergenic 55.0%
TGCCTGAGATGATCTGCCTG+TGG + chr3.3:63608927-63608946 None:intergenic 55.0%
TGTCTTGGACCAGACTCTCC+TGG + chr3.3:63608609-63608628 None:intergenic 55.0%
! CACCCCACATGCTAACTTGC+TGG + chr3.3:63607082-63607101 None:intergenic 55.0%
! CGCCTTTTCCTATGGATCGG+AGG - chr3.3:63608348-63608367 MS.gene35634:CDS 55.0%
! GAAAAGCCGGGAGCGCAAAA+AGG - chr3.3:63607540-63607559 MS.gene35634:CDS 55.0%
!! AGGAAAAGGCGCTCTACGGA+TGG + chr3.3:63608339-63608358 None:intergenic 55.0%
!! CCGTAGAGCGCCTTTTCCTA+TGG - chr3.3:63608340-63608359 MS.gene35634:CDS 55.0%
ACGCCTCGCACAGAATCGAG+AGG - chr3.3:63607510-63607529 MS.gene35634:CDS 60.0%
CAGCCTCTCGATTCTGTGCG+AGG + chr3.3:63607516-63607535 None:intergenic 60.0%
GGCGAGATCCTCCGATCCAT+AGG + chr3.3:63608359-63608378 None:intergenic 60.0%
GTCCGAAGTGCAGCTTCGTC+TGG - chr3.3:63608215-63608234 MS.gene35634:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 63607059 63609103 63607059 ID=MS.gene35634
chr3.3 mRNA 63607059 63609103 63607059 ID=MS.gene35634.t1;Parent=MS.gene35634
chr3.3 exon 63609008 63609103 63609008 ID=MS.gene35634.t1.exon1;Parent=MS.gene35634.t1
chr3.3 CDS 63609008 63609103 63609008 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63608776 63608841 63608776 ID=MS.gene35634.t1.exon2;Parent=MS.gene35634.t1
chr3.3 CDS 63608776 63608841 63608776 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63608601 63608660 63608601 ID=MS.gene35634.t1.exon3;Parent=MS.gene35634.t1
chr3.3 CDS 63608601 63608660 63608601 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63608292 63608369 63608292 ID=MS.gene35634.t1.exon4;Parent=MS.gene35634.t1
chr3.3 CDS 63608292 63608369 63608292 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63608116 63608179 63608116 ID=MS.gene35634.t1.exon5;Parent=MS.gene35634.t1
chr3.3 CDS 63608116 63608179 63608116 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63607767 63608038 63607767 ID=MS.gene35634.t1.exon6;Parent=MS.gene35634.t1
chr3.3 CDS 63607767 63608038 63607767 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63607442 63607669 63607442 ID=MS.gene35634.t1.exon7;Parent=MS.gene35634.t1
chr3.3 CDS 63607442 63607669 63607442 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
chr3.3 exon 63607059 63607232 63607059 ID=MS.gene35634.t1.exon8;Parent=MS.gene35634.t1
chr3.3 CDS 63607059 63607232 63607059 ID=cds.MS.gene35634.t1;Parent=MS.gene35634.t1
Gene Sequence

>MS.gene35634

ATGGATATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGTCTTAATTCAATTGCTTCTCCAATGTTACTAGTGAACAGTAACACTACTAGCATGGAGAACAAGGTGAGTTATTATTATAACTAATAATTTGATTTTATTTATTTATTTATTATTGTTACTTTTATGATTATAGAGTCTGACTCATTTAATGTGGAAACTAGATTATATAACAATCTTATGAATTTGAATTTTGCAGTCTGAATATATTCCTCATGAACCAAGGGATCATTCAGAAGCTGAACAAGAGACTACAAACAATAAGGTAATGAAATTTGATCAAGCCATAAATTGTGACATTTTGATTTTTGTCCAAAAATGTTTTGTGATAAAACATGAAAGTTTTTGAGTTGTTTATGTGTCTGTGACATTATGTGTAGGTACTTAGACGCCTCGCACAGAATCGAGAGGCTGCTAAGAAAAGCCGGGAGCGCAAAAAGGTAATATAATTTACTTATAGGAAAAGTCATTTGATTTGTTCCTTTGTTGTGTAAAACGGTTGAGGAAATGAAAATTGAGGTTTTTATCCCATTCAACTCAATAGAACAGTTTATAAAGATGCAAGCAGTTATAACTGACTAACAAACATATTTCCAACTAACTAACTAACTTAGTTCTAACTAGCTTTTAACTAATCCACAAATATGAAACATATGCTTGATATTGTGCAGGCTTATGTTAAACAATTAGAATCAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATTGGGAGAGCAAGAAAGCAGGTGAACCAAAACTAACAATTTATTTACCATCTTCACTTCTGATTTATATTTATGTTATGCTCTTTCAATTGTAAATTTTAAGCATATATTAAAATTTCTACTTTAGTTGCAGGGTATTTGCACAGGAAGCGCCTTAGATACCAGTTTTATGGGATCATCTGAAACAATTAACCCAGGTTTGTGATTCTTGATATCAATTGTAAGCATTCTTAATATCTTTTATTCTTATTGATCTTTGTGTTCTGTTAACCAGGGATTGTTGCGTTTGAAATTGAATACGGAAATTGGGTTGACGAGAACCATAGGCGGAACAAAGAGCTCAGAAATGCATTTCAAACTAATGCGTCCGAAGTGCAGCTTCGTCTGGTTGTTCAGAGTGTCTTGAATCATTACTCGGATCTTTTCAGAATGAAAACGGATGCTGCAAAGGCTGATCCCCTCTATTTAATCTCCGGTGTGTGGAAACCATCCGTAGAGCGCCTTTTCCTATGGATCGGAGGATCTCGCCCATCACAACTTCTAAATGTACAAATCTGATCTTAATAGCGAATTAGATTAAAAATTGGTAATGTCGAATCCTCAACGAATCACTAATCATTATTAGATTTTTTTCCTCCTACAGCTCATTGTGCCACAACTTGAGCCTTTGTCTGATGAACAAATGTTGAGCATTAAAAAACTTCATCTGTCGTCTCAGCAAGCCGAAGATGCTCTTTCACAAGGACTAAATAAACTCCAGGAGAGTCTGGTCCAAGACATGGCATTTATTCCATTAAATGCAGCAAATCATGGAATTCAGATGGCTATTGCTATAGACAAATTTGAGGGACTCGAAGGTTTTGTAATCCAGGTAATGTAACACCAAGAAATTTGAATCAACTAGGAATTTTCTAATGCAACTCTTTTATTCTAAGTCCTGATGTTCAAATTATAACTAGACCCTTCCTCATCATTTTGGGATGACAGTTCATATATTATGAATTAGTATTTCTTTATGCTCCATATGCATCATTACATTGTTCAATTTGATAAATTGTGAATGGTTTGTGTTGTCCACAGGCAGATCATCTCAGGCAGCAAACTCTGATACACATGTCCCGCATCCTGTCTACACACCAAGCTGCTAGGGGCTTGATTGCTCTTGGGGAATACTTTCATCGTCTTCGTACTATTTGTTCTCTATGGACTTCTTGTCCATTCGATTCCAAGATATCACCTAGGATTACTCCTTAG
Protein sequence

>MS.gene35634.t1

MDIYEPFQQVSMWGDSFKVEGGLNSIASPMLLSEYIPHEPRDHSEAEQETTNNKVLRRLAQNREAAKKSRERKKAYVKQLESSRLKLMQLELEIGRARKQGICTGSALDTSFMGSSETINPGIVAFEIEYGNWVDENHRRNKELRNAFQTNASEVQLRLVVQSVLNHYSDLFRMKTDAAKADPLYLISGVWKPSVERLFLWIGGSRPSQLLNLIVPQLEPLSDEQMLSIKKLHLSSQQAEDALSQGLNKLQESLVQDMAFIPLNAANHGIQMAIAIDKFEGLEGFVIQADHLRQQTLIHMSRILSTHQAARGLIALGEYFHRLRTICSLWTSCPFDSKISPRITP