Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35792.t1 | XP_003597027.2 | 95.6 | 452 | 20 | 0 | 1 | 452 | 1 | 452 | 9.60E-257 | 895.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35792.t1 | Q5PP37 | 61.4 | 440 | 154 | 2 | 13 | 452 | 12 | 435 | 6.5e-153 | 542.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35792.t1 | G7IKK8 | 95.6 | 452 | 20 | 0 | 1 | 452 | 1 | 452 | 6.9e-257 | 895.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35792.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35792.t1 | MTR_2g088820 | 95.575 | 452 | 20 | 0 | 1 | 452 | 1 | 452 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35792.t1 | AT3G21820 | 63.636 | 440 | 144 | 5 | 13 | 452 | 12 | 435 | 0.0 | 562 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15118 | gene | 9778 | 17544 | 9778 | ID=MS.gene35792 |
| 15118 | mRNA | 9778 | 17544 | 9778 | ID=MS.gene35792.t1;Parent=MS.gene35792 |
| 15118 | exon | 9778 | 9864 | 9778 | ID=MS.gene35792.t1.exon1;Parent=MS.gene35792.t1 |
| 15118 | CDS | 9778 | 9864 | 9778 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 9955 | 10030 | 9955 | ID=MS.gene35792.t1.exon2;Parent=MS.gene35792.t1 |
| 15118 | CDS | 9955 | 10030 | 9955 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 10202 | 10287 | 10202 | ID=MS.gene35792.t1.exon3;Parent=MS.gene35792.t1 |
| 15118 | CDS | 10202 | 10287 | 10202 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 10388 | 10731 | 10388 | ID=MS.gene35792.t1.exon4;Parent=MS.gene35792.t1 |
| 15118 | CDS | 10388 | 10731 | 10388 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 11424 | 11536 | 11424 | ID=MS.gene35792.t1.exon5;Parent=MS.gene35792.t1 |
| 15118 | CDS | 11424 | 11536 | 11424 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 11646 | 11677 | 11646 | ID=MS.gene35792.t1.exon6;Parent=MS.gene35792.t1 |
| 15118 | CDS | 11646 | 11677 | 11646 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 12259 | 12410 | 12259 | ID=MS.gene35792.t1.exon7;Parent=MS.gene35792.t1 |
| 15118 | CDS | 12259 | 12410 | 12259 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 12623 | 12710 | 12623 | ID=MS.gene35792.t1.exon8;Parent=MS.gene35792.t1 |
| 15118 | CDS | 12623 | 12710 | 12623 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 12787 | 12835 | 12787 | ID=MS.gene35792.t1.exon9;Parent=MS.gene35792.t1 |
| 15118 | CDS | 12787 | 12835 | 12787 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 12932 | 12986 | 12932 | ID=MS.gene35792.t1.exon10;Parent=MS.gene35792.t1 |
| 15118 | CDS | 12932 | 12986 | 12932 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 13177 | 13246 | 13177 | ID=MS.gene35792.t1.exon11;Parent=MS.gene35792.t1 |
| 15118 | CDS | 13177 | 13246 | 13177 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 13327 | 13396 | 13327 | ID=MS.gene35792.t1.exon12;Parent=MS.gene35792.t1 |
| 15118 | CDS | 13327 | 13396 | 13327 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 17122 | 17198 | 17122 | ID=MS.gene35792.t1.exon13;Parent=MS.gene35792.t1 |
| 15118 | CDS | 17122 | 17198 | 17122 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| 15118 | exon | 17488 | 17544 | 17488 | ID=MS.gene35792.t1.exon14;Parent=MS.gene35792.t1 |
| 15118 | CDS | 17488 | 17544 | 17488 | ID=cds.MS.gene35792.t1;Parent=MS.gene35792.t1 |
| Gene Sequence |
| Protein sequence |
