Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35793.t1 | XP_003597027.2 | 93.7 | 459 | 22 | 1 | 1 | 459 | 1 | 452 | 1.90E-252 | 881.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35793.t1 | Q5PP37 | 60.0 | 447 | 156 | 3 | 13 | 459 | 12 | 435 | 1.3e-148 | 527.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35793.t1 | G7IKK8 | 93.7 | 459 | 22 | 1 | 1 | 459 | 1 | 452 | 1.4e-252 | 881.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35793.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35793.t1 | MTR_2g088820 | 93.682 | 459 | 22 | 1 | 1 | 459 | 1 | 452 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35793.t1 | AT3G21820 | 62.192 | 447 | 146 | 6 | 13 | 459 | 12 | 435 | 0.0 | 548 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15131 | gene | 883 | 8646 | 883 | ID=MS.gene35793 |
| 15131 | mRNA | 883 | 8646 | 883 | ID=MS.gene35793.t1;Parent=MS.gene35793 |
| 15131 | exon | 883 | 969 | 883 | ID=MS.gene35793.t1.exon1;Parent=MS.gene35793.t1 |
| 15131 | CDS | 883 | 969 | 883 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 1060 | 1135 | 1060 | ID=MS.gene35793.t1.exon2;Parent=MS.gene35793.t1 |
| 15131 | CDS | 1060 | 1135 | 1060 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 1307 | 1392 | 1307 | ID=MS.gene35793.t1.exon3;Parent=MS.gene35793.t1 |
| 15131 | CDS | 1307 | 1392 | 1307 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 1493 | 1836 | 1493 | ID=MS.gene35793.t1.exon4;Parent=MS.gene35793.t1 |
| 15131 | CDS | 1493 | 1836 | 1493 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 2529 | 2641 | 2529 | ID=MS.gene35793.t1.exon5;Parent=MS.gene35793.t1 |
| 15131 | CDS | 2529 | 2641 | 2529 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 2750 | 2781 | 2750 | ID=MS.gene35793.t1.exon6;Parent=MS.gene35793.t1 |
| 15131 | CDS | 2750 | 2781 | 2750 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 3363 | 3536 | 3363 | ID=MS.gene35793.t1.exon7;Parent=MS.gene35793.t1 |
| 15131 | CDS | 3363 | 3536 | 3363 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 3726 | 3812 | 3726 | ID=MS.gene35793.t1.exon8;Parent=MS.gene35793.t1 |
| 15131 | CDS | 3726 | 3812 | 3726 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 3889 | 3937 | 3889 | ID=MS.gene35793.t1.exon9;Parent=MS.gene35793.t1 |
| 15131 | CDS | 3889 | 3937 | 3889 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 4034 | 4088 | 4034 | ID=MS.gene35793.t1.exon10;Parent=MS.gene35793.t1 |
| 15131 | CDS | 4034 | 4088 | 4034 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 4279 | 4348 | 4279 | ID=MS.gene35793.t1.exon11;Parent=MS.gene35793.t1 |
| 15131 | CDS | 4279 | 4348 | 4279 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 4429 | 4498 | 4429 | ID=MS.gene35793.t1.exon12;Parent=MS.gene35793.t1 |
| 15131 | CDS | 4429 | 4498 | 4429 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 8224 | 8300 | 8224 | ID=MS.gene35793.t1.exon13;Parent=MS.gene35793.t1 |
| 15131 | CDS | 8224 | 8300 | 8224 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| 15131 | exon | 8590 | 8646 | 8590 | ID=MS.gene35793.t1.exon14;Parent=MS.gene35793.t1 |
| 15131 | CDS | 8590 | 8646 | 8590 | ID=cds.MS.gene35793.t1;Parent=MS.gene35793.t1 |
| Gene Sequence |
| Protein sequence |
