Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36204.t1 | XP_003616019.1 | 57.5 | 325 | 62 | 7 | 189 | 437 | 93 | 417 | 6.90E-82 | 314.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36204.t1 | Q9SCU5 | 51.2 | 258 | 56 | 2 | 239 | 426 | 153 | 410 | 4.4e-61 | 236.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36204.t1 | G7K0S2 | 57.5 | 325 | 62 | 7 | 189 | 437 | 93 | 417 | 5.0e-82 | 314.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36204.t1 | MTR_5g075220 | 54.128 | 327 | 60 | 11 | 189 | 432 | 93 | 412 | 1.20e-90 | 286 |
MS.gene36204.t1 | MTR_7g072860 | 67.593 | 108 | 30 | 1 | 239 | 346 | 156 | 258 | 1.09e-40 | 153 |
MS.gene36204.t1 | MTR_7g072860 | 52.055 | 73 | 35 | 0 | 346 | 418 | 322 | 394 | 3.18e-16 | 81.3 |
MS.gene36204.t1 | MTR_7g072640 | 67.593 | 108 | 30 | 1 | 239 | 346 | 156 | 258 | 1.09e-40 | 153 |
MS.gene36204.t1 | MTR_7g072640 | 52.055 | 73 | 35 | 0 | 346 | 418 | 322 | 394 | 3.18e-16 | 81.3 |
MS.gene36204.t1 | MTR_6g016260 | 90.000 | 90 | 9 | 0 | 239 | 328 | 134 | 223 | 1.11e-40 | 153 |
MS.gene36204.t1 | MTR_6g016260 | 65.333 | 75 | 26 | 0 | 346 | 420 | 303 | 377 | 2.65e-23 | 102 |
MS.gene36204.t1 | MTR_7g114680 | 48.837 | 172 | 73 | 4 | 182 | 344 | 72 | 237 | 1.18e-39 | 151 |
MS.gene36204.t1 | MTR_7g114680 | 50.000 | 70 | 34 | 1 | 353 | 422 | 354 | 422 | 4.99e-14 | 74.7 |
MS.gene36204.t1 | MTR_7g114680 | 48.837 | 172 | 73 | 4 | 182 | 344 | 86 | 251 | 1.34e-39 | 151 |
MS.gene36204.t1 | MTR_7g114680 | 50.000 | 70 | 34 | 1 | 353 | 422 | 368 | 436 | 5.18e-14 | 74.7 |
MS.gene36204.t1 | MTR_1g081330 | 55.319 | 141 | 54 | 4 | 205 | 344 | 34 | 166 | 8.69e-39 | 149 |
MS.gene36204.t1 | MTR_1g081330 | 53.521 | 71 | 32 | 1 | 353 | 423 | 285 | 354 | 3.88e-15 | 78.2 |
MS.gene36204.t1 | MTR_1g081330 | 55.319 | 141 | 54 | 4 | 205 | 344 | 119 | 251 | 1.34e-38 | 149 |
MS.gene36204.t1 | MTR_1g081330 | 53.521 | 71 | 32 | 1 | 353 | 423 | 370 | 439 | 4.32e-15 | 78.2 |
MS.gene36204.t1 | MTR_3g056010 | 66.667 | 96 | 32 | 0 | 233 | 328 | 148 | 243 | 2.80e-38 | 140 |
MS.gene36204.t1 | MTR_3g056025 | 66.667 | 96 | 32 | 0 | 233 | 328 | 148 | 243 | 3.62e-38 | 140 |
MS.gene36204.t1 | MTR_5g094390 | 64.583 | 96 | 34 | 0 | 233 | 328 | 149 | 244 | 4.95e-38 | 140 |
MS.gene36204.t1 | MTR_0283s0050 | 64.211 | 95 | 34 | 0 | 233 | 327 | 145 | 239 | 6.81e-38 | 139 |
MS.gene36204.t1 | MTR_8g093090 | 71.111 | 90 | 25 | 1 | 239 | 328 | 17 | 105 | 1.02e-37 | 143 |
MS.gene36204.t1 | MTR_5g097530 | 64.211 | 95 | 34 | 0 | 233 | 327 | 145 | 239 | 1.06e-37 | 139 |
MS.gene36204.t1 | MTR_3g099940 | 65.625 | 96 | 33 | 0 | 233 | 328 | 149 | 244 | 1.37e-37 | 139 |
MS.gene36204.t1 | MTR_8g093090 | 71.111 | 90 | 25 | 1 | 239 | 328 | 79 | 167 | 1.89e-37 | 144 |
MS.gene36204.t1 | MTR_7g029020 | 65.625 | 96 | 33 | 0 | 233 | 328 | 148 | 243 | 5.02e-37 | 137 |
MS.gene36204.t1 | MTR_8g093090 | 71.111 | 90 | 25 | 1 | 239 | 328 | 179 | 267 | 6.88e-37 | 143 |
MS.gene36204.t1 | MTR_8g093090 | 71.111 | 90 | 25 | 1 | 239 | 328 | 161 | 249 | 7.16e-37 | 143 |
MS.gene36204.t1 | MTR_1g103850 | 74.444 | 90 | 21 | 2 | 239 | 328 | 152 | 239 | 1.72e-36 | 142 |
MS.gene36204.t1 | MTR_1g103850 | 55.072 | 69 | 30 | 1 | 354 | 422 | 364 | 431 | 4.67e-15 | 77.8 |
MS.gene36204.t1 | MTR_3g095680 | 68.889 | 90 | 27 | 1 | 239 | 328 | 17 | 105 | 3.50e-36 | 139 |
MS.gene36204.t1 | MTR_8g006190 | 42.328 | 189 | 80 | 3 | 23 | 202 | 238 | 406 | 3.98e-36 | 138 |
MS.gene36204.t1 | MTR_8g006190 | 39.894 | 188 | 97 | 2 | 26 | 202 | 77 | 259 | 1.06e-30 | 123 |
MS.gene36204.t1 | MTR_4g028830 | 81.111 | 90 | 17 | 0 | 239 | 328 | 152 | 241 | 4.12e-36 | 140 |
MS.gene36204.t1 | MTR_4g028830 | 55.556 | 81 | 35 | 1 | 346 | 426 | 328 | 407 | 2.04e-14 | 75.9 |
MS.gene36204.t1 | MTR_8g006190 | 42.328 | 189 | 80 | 3 | 23 | 202 | 246 | 414 | 6.35e-36 | 137 |
MS.gene36204.t1 | MTR_8g006190 | 39.894 | 188 | 97 | 2 | 26 | 202 | 85 | 267 | 2.26e-30 | 122 |
MS.gene36204.t1 | MTR_3g095680 | 65.625 | 96 | 32 | 1 | 233 | 328 | 155 | 249 | 1.46e-35 | 139 |
MS.gene36204.t1 | MTR_3g095680 | 68.889 | 90 | 27 | 1 | 239 | 328 | 193 | 281 | 1.97e-35 | 139 |
MS.gene36204.t1 | MTR_3g076650 | 77.778 | 90 | 20 | 0 | 239 | 328 | 154 | 243 | 6.93e-33 | 131 |
MS.gene36204.t1 | MTR_3g076650 | 49.231 | 65 | 33 | 0 | 355 | 419 | 338 | 402 | 1.85e-11 | 66.6 |
MS.gene36204.t1 | MTR_3g080960 | 78.889 | 90 | 18 | 1 | 239 | 328 | 148 | 236 | 6.38e-32 | 128 |
MS.gene36204.t1 | MTR_8g027265 | 51.572 | 159 | 73 | 4 | 233 | 389 | 160 | 316 | 9.70e-30 | 122 |
MS.gene36204.t1 | MTR_3g062420 | 59.794 | 97 | 24 | 1 | 239 | 320 | 1965 | 2061 | 2.33e-27 | 116 |
MS.gene36204.t1 | MTR_4g123750 | 31.868 | 182 | 115 | 4 | 26 | 207 | 115 | 287 | 4.08e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36204.t1 | AT5G58350 | 45.059 | 253 | 74 | 4 | 239 | 427 | 147 | 398 | 7.48e-56 | 194 |
MS.gene36204.t1 | AT3G51630 | 88.889 | 90 | 10 | 0 | 239 | 328 | 153 | 242 | 5.11e-49 | 176 |
MS.gene36204.t1 | AT3G51630 | 60.494 | 81 | 32 | 0 | 346 | 426 | 330 | 410 | 4.60e-24 | 105 |
MS.gene36204.t1 | AT3G51630 | 88.889 | 90 | 10 | 0 | 239 | 328 | 153 | 242 | 5.11e-49 | 176 |
MS.gene36204.t1 | AT3G51630 | 60.494 | 81 | 32 | 0 | 346 | 426 | 330 | 410 | 4.60e-24 | 105 |
MS.gene36204.t1 | AT3G48260 | 41.667 | 240 | 80 | 5 | 239 | 418 | 150 | 389 | 1.37e-46 | 168 |
MS.gene36204.t1 | AT3G48260 | 74.444 | 90 | 23 | 0 | 239 | 328 | 55 | 144 | 5.65e-42 | 154 |
MS.gene36204.t1 | AT3G22420 | 55.263 | 152 | 55 | 4 | 189 | 328 | 90 | 240 | 2.50e-40 | 152 |
MS.gene36204.t1 | AT3G22420 | 50.633 | 79 | 37 | 2 | 346 | 424 | 344 | 420 | 1.64e-14 | 76.3 |
MS.gene36204.t1 | AT3G22420 | 55.263 | 152 | 55 | 4 | 189 | 328 | 90 | 240 | 2.67e-40 | 152 |
MS.gene36204.t1 | AT3G22420 | 55.263 | 152 | 55 | 4 | 189 | 328 | 161 | 311 | 4.84e-40 | 152 |
MS.gene36204.t1 | AT3G22420 | 50.633 | 79 | 37 | 2 | 346 | 424 | 415 | 491 | 1.79e-14 | 76.3 |
MS.gene36204.t1 | AT3G22420 | 55.263 | 152 | 55 | 4 | 189 | 328 | 161 | 311 | 5.52e-40 | 152 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 67 | 161 | 1.34e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 280 | 359 | 6.40e-15 | 76.6 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 67 | 161 | 1.34e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 280 | 359 | 6.40e-15 | 76.6 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 67 | 161 | 1.34e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 280 | 359 | 6.40e-15 | 76.6 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 67 | 161 | 1.34e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 280 | 359 | 6.40e-15 | 76.6 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 67 | 161 | 1.34e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 280 | 359 | 6.40e-15 | 76.6 |
MS.gene36204.t1 | AT3G04910 | 67.925 | 106 | 28 | 2 | 239 | 344 | 26 | 125 | 1.50e-39 | 150 |
MS.gene36204.t1 | AT3G04910 | 51.429 | 70 | 33 | 1 | 353 | 422 | 273 | 341 | 7.21e-14 | 73.9 |
MS.gene36204.t1 | AT3G04910 | 56.738 | 141 | 52 | 4 | 205 | 344 | 96 | 228 | 2.15e-39 | 150 |
MS.gene36204.t1 | AT3G04910 | 51.429 | 70 | 33 | 1 | 353 | 422 | 376 | 444 | 9.32e-14 | 73.9 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 116 | 210 | 2.67e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 329 | 408 | 6.82e-15 | 77.0 |
MS.gene36204.t1 | AT3G04910 | 56.738 | 141 | 52 | 4 | 205 | 344 | 119 | 251 | 2.74e-39 | 150 |
MS.gene36204.t1 | AT3G04910 | 51.429 | 70 | 33 | 1 | 353 | 422 | 399 | 467 | 8.34e-14 | 73.9 |
MS.gene36204.t1 | AT5G28080 | 70.833 | 96 | 27 | 1 | 239 | 334 | 153 | 247 | 6.26e-39 | 147 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 366 | 445 | 6.32e-15 | 77.0 |
MS.gene36204.t1 | AT3G18750 | 61.682 | 107 | 40 | 1 | 222 | 328 | 121 | 226 | 3.00e-37 | 143 |
MS.gene36204.t1 | AT3G18750 | 61.682 | 107 | 40 | 1 | 222 | 328 | 139 | 244 | 3.88e-37 | 143 |
MS.gene36204.t1 | AT3G18750 | 61.682 | 107 | 40 | 1 | 222 | 328 | 139 | 244 | 3.88e-37 | 143 |
MS.gene36204.t1 | AT3G18750 | 61.682 | 107 | 40 | 1 | 222 | 328 | 139 | 244 | 3.88e-37 | 143 |
MS.gene36204.t1 | AT1G49160 | 67.778 | 90 | 28 | 1 | 239 | 328 | 29 | 117 | 4.66e-37 | 140 |
MS.gene36204.t1 | AT1G49160 | 67.778 | 90 | 28 | 1 | 239 | 328 | 29 | 117 | 4.66e-37 | 140 |
MS.gene36204.t1 | AT1G49160 | 67.778 | 90 | 28 | 1 | 239 | 328 | 29 | 117 | 4.66e-37 | 140 |
MS.gene36204.t1 | AT1G49160 | 67.778 | 90 | 28 | 1 | 239 | 328 | 138 | 226 | 1.75e-36 | 141 |
MS.gene36204.t1 | AT1G49160 | 64.583 | 96 | 33 | 1 | 233 | 328 | 150 | 244 | 2.62e-36 | 140 |
MS.gene36204.t1 | AT1G49160 | 67.778 | 90 | 28 | 1 | 239 | 328 | 203 | 291 | 4.48e-36 | 139 |
MS.gene36204.t1 | AT1G49160 | 67.778 | 90 | 28 | 1 | 239 | 328 | 203 | 291 | 6.99e-36 | 140 |
MS.gene36204.t1 | AT3G22420 | 45.902 | 183 | 56 | 4 | 189 | 328 | 90 | 272 | 1.17e-35 | 139 |
MS.gene36204.t1 | AT3G22420 | 50.633 | 79 | 37 | 2 | 346 | 424 | 376 | 452 | 2.07e-14 | 75.9 |
MS.gene36204.t1 | AT3G22420 | 45.902 | 183 | 56 | 4 | 189 | 328 | 90 | 272 | 1.20e-35 | 139 |
MS.gene36204.t1 | AT5G55560 | 61.053 | 95 | 37 | 0 | 233 | 327 | 153 | 247 | 1.56e-35 | 134 |
MS.gene36204.t1 | AT1G64630 | 75.556 | 90 | 21 | 1 | 239 | 328 | 144 | 232 | 7.13e-31 | 125 |
MS.gene36204.t1 | AT5G41990 | 75.556 | 90 | 21 | 1 | 239 | 328 | 157 | 245 | 2.54e-30 | 124 |
MS.gene36204.t1 | AT5G28080 | 70.370 | 54 | 16 | 0 | 281 | 334 | 1 | 54 | 1.88e-19 | 89.0 |
MS.gene36204.t1 | AT5G28080 | 49.383 | 81 | 40 | 1 | 346 | 426 | 173 | 252 | 3.20e-15 | 76.6 |
Find 97 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTAAATATTTCAACCTTCA+TGG | 0.235685 | 7.1:+55831106 | None:intergenic |
TATTCTTCCTCATACATTTC+CGG | 0.238340 | 7.1:+55829278 | None:intergenic |
CAATCAGCTCATAGTGTTAT+AGG | 0.246199 | 7.1:-55829517 | MS.gene36204:intron |
TAATGCTGCAGCTAACAAAT+TGG | 0.283155 | 7.1:-55830692 | MS.gene36204:CDS |
CTTGGTGATGTTTACTCATT+TGG | 0.312704 | 7.1:-55829248 | MS.gene36204:CDS |
GAACTTAATGAAGCAGAAAA+AGG | 0.316570 | 7.1:-55831062 | MS.gene36204:CDS |
TAAAGGACTTGATTCAGATT+TGG | 0.327319 | 7.1:-55830736 | MS.gene36204:CDS |
AGAAAGATAGTATCATCTTC+AGG | 0.339904 | 7.1:+55829010 | None:intergenic |
GGATTAGTACATTCACTATA+TGG | 0.340003 | 7.1:+55829191 | None:intergenic |
GCATCCACTCTTGAATTTGA+TGG | 0.342132 | 7.1:+55830660 | None:intergenic |
GCGTTTCATGAGATCTTGTT+CGG | 0.342180 | 7.1:-55831453 | None:intergenic |
CGTTTCATGAGATCTTGTTC+GGG | 0.350937 | 7.1:-55831452 | None:intergenic |
CTCATTTGGCATGTGTGTAT+TGG | 0.363993 | 7.1:-55829234 | MS.gene36204:CDS |
ATCACCAACAGTGAAGGATT+TGG | 0.367967 | 7.1:+55830944 | None:intergenic |
AGCAGCAGCTGGATATATTA+AGG | 0.376806 | 7.1:-55831141 | MS.gene36204:CDS |
TTTCCGCTGAAGAAAGTCAT+AGG | 0.378114 | 7.1:-55829043 | MS.gene36204:CDS |
ACATCGGTAAATTCACGTTC+TGG | 0.383504 | 7.1:-55829146 | MS.gene36204:intron |
CATCTTGGACAAGTGAAAAT+TGG | 0.384851 | 7.1:-55829574 | MS.gene36204:CDS |
AGAATTGGAGATTTCTGATT+GGG | 0.392856 | 7.1:-55828760 | MS.gene36204:CDS |
ACTTTCTTGTATATCTGTGC+TGG | 0.393964 | 7.1:+55829170 | None:intergenic |
AATGGAGATGGTAAAAGAAT+TGG | 0.394174 | 7.1:-55828775 | MS.gene36204:CDS |
GCTGCAGCATTAAAGTTAGA+TGG | 0.405381 | 7.1:+55830703 | None:intergenic |
CGCCGGTCGTCGTTTGGTTG+TGG | 0.405472 | 7.1:-55830321 | MS.gene36204:CDS |
CCAAACGACGACCGGCGATC+TGG | 0.408105 | 7.1:+55830327 | None:intergenic |
ATATTTGTCAATGGTCATCT+TGG | 0.411051 | 7.1:-55829589 | MS.gene36204:CDS |
CCAGATCGCCGGTCGTCGTT+TGG | 0.417587 | 7.1:-55830327 | MS.gene36204:CDS |
GTTAGGAACACCGGAGTTCA+TGG | 0.418937 | 7.1:-55829303 | MS.gene36204:intron |
CATCCACTCTTGAATTTGAT+GGG | 0.420897 | 7.1:+55830661 | None:intergenic |
CATGTTCAAATATGATCAAT+TGG | 0.425541 | 7.1:-55828655 | MS.gene36204:CDS |
AAATCCCCATTGTTTCTTTG+AGG | 0.428316 | 7.1:+55831196 | None:intergenic |
CATCTCCATTGCAACATCAA+TGG | 0.435751 | 7.1:+55828788 | None:intergenic |
ATCTCCATTGCAACATCAAT+GGG | 0.437975 | 7.1:+55828789 | None:intergenic |
CTCCACAACCAAACGACGAC+CGG | 0.439175 | 7.1:+55830319 | None:intergenic |
ATCATATTTGCAATATCTAA+AGG | 0.440135 | 7.1:+55828735 | None:intergenic |
TTGTGCCTCAAAGAAACAAT+GGG | 0.443382 | 7.1:-55831201 | MS.gene36204:CDS |
GAAGGTTGAAATATTTAAGA+TGG | 0.446865 | 7.1:-55831102 | MS.gene36204:CDS |
AAGAATTGGAGATTTCTGAT+TGG | 0.452979 | 7.1:-55828761 | MS.gene36204:CDS |
CGTTTCTCCTCTTCGTCGGT+GGG | 0.456848 | 7.1:-55831336 | MS.gene36204:CDS |
TCAAAGACGGATCACCCCTC+TGG | 0.460653 | 7.1:-55830975 | MS.gene36204:CDS |
ATCTCCAAATCCTTCACTGT+TGG | 0.461179 | 7.1:-55830948 | MS.gene36204:CDS |
CAATGTATGATTCCTTCACT+TGG | 0.463720 | 7.1:-55831013 | MS.gene36204:CDS |
CCTCTTCGTCGGTGGGTTGG+TGG | 0.464523 | 7.1:-55831329 | MS.gene36204:CDS |
ACCATCTCGTTTCCGTTCGT+CGG | 0.471078 | 7.1:-55830373 | MS.gene36204:CDS |
ACTCAGAGAGATGAAGTTTG+AGG | 0.477458 | 7.1:+55830409 | None:intergenic |
TGGAGATATCTGCCTTGGAC+TGG | 0.484810 | 7.1:-55828635 | MS.gene36204:CDS |
TCTCCTCTTCGTCGGTGGGT+TGG | 0.496439 | 7.1:-55831332 | MS.gene36204:CDS |
TGTGATAACATATTTGTCAA+TGG | 0.503080 | 7.1:-55829598 | MS.gene36204:CDS |
GCGTTTCTCCTCTTCGTCGG+TGG | 0.507353 | 7.1:-55831337 | MS.gene36204:CDS |
CGAGCGTTTCTCCTCTTCGT+CGG | 0.508733 | 7.1:-55831340 | MS.gene36204:CDS |
TCAATTGGAGATATCTGCCT+TGG | 0.512457 | 7.1:-55828640 | MS.gene36204:CDS |
CCACCAACCCACCGACGAAG+AGG | 0.512680 | 7.1:+55831329 | None:intergenic |
GAACTCAATGAAGCAGCAGC+TGG | 0.513583 | 7.1:-55831152 | MS.gene36204:CDS |
ATTGATCATATTTGAACATG+TGG | 0.532277 | 7.1:+55828658 | None:intergenic |
CATGGCACCGGAAATGTATG+AGG | 0.536678 | 7.1:-55829285 | MS.gene36204:CDS |
TCACTGTTGGTGATAGAGAC+TGG | 0.539530 | 7.1:-55830935 | MS.gene36204:intron |
AGTATCAGTGAGAATATCAA+AGG | 0.542221 | 7.1:+55828812 | None:intergenic |
ACAAACAACAAAGCAAAACA+CGG | 0.552695 | 7.1:+55830290 | None:intergenic |
TTCGTCGGTGGGTTGGTGGT+CGG | 0.553355 | 7.1:-55831325 | MS.gene36204:intron |
TTTGTGCCTCAAAGAAACAA+TGG | 0.556579 | 7.1:-55831202 | MS.gene36204:CDS |
ACGGCGTTGCTGCCGACGAA+CGG | 0.558266 | 7.1:+55830361 | None:intergenic |
GTCTCTATCACCAACAGTGA+AGG | 0.563167 | 7.1:+55830938 | None:intergenic |
GAGGAAGAATACAATGAACT+TGG | 0.571983 | 7.1:-55829266 | MS.gene36204:CDS |
CGGAAACGAGATGGTGAGGA+GGG | 0.575914 | 7.1:+55830381 | None:intergenic |
GGAGAATTGCAGCTAGTCCA+TGG | 0.578732 | 7.1:+55829548 | None:intergenic |
GTTAACAAGTCTCCAAGTGA+AGG | 0.591863 | 7.1:+55831001 | None:intergenic |
TATGAGCTGATTGAGAACCT+TGG | 0.593695 | 7.1:+55829527 | None:intergenic |
ACTTGTTAACTTCTCAAAGA+CGG | 0.597230 | 7.1:-55830988 | MS.gene36204:CDS |
ATTTCCGGTGCCATGAACTC+CGG | 0.598213 | 7.1:+55829293 | None:intergenic |
TACTCCCATTGATGTTGCAA+TGG | 0.600560 | 7.1:-55828793 | MS.gene36204:CDS |
CGGTCGTCGTTTGGTTGTGG+AGG | 0.600882 | 7.1:-55830318 | MS.gene36204:CDS |
CGACGAAGAGGAGAAACGCT+CGG | 0.601022 | 7.1:+55831341 | None:intergenic |
TTACTCACATGGCCAGTCCA+AGG | 0.601258 | 7.1:+55828623 | None:intergenic |
AACACCGGAGTTCATGGCAC+CGG | 0.601512 | 7.1:-55829297 | MS.gene36204:CDS |
CAAGTGAAGGAATCATACAT+TGG | 0.602280 | 7.1:+55831014 | None:intergenic |
GTATCAGTGAGAATATCAAA+GGG | 0.607044 | 7.1:+55828813 | None:intergenic |
CGTTTGTGTCTCCAGATCGC+CGG | 0.609033 | 7.1:-55830338 | MS.gene36204:CDS |
ACATTGATGATATATACTAA+AGG | 0.615312 | 7.1:-55830753 | MS.gene36204:CDS |
GGACTAGCTGCAATTCTCCA+AGG | 0.616230 | 7.1:-55829544 | MS.gene36204:CDS |
GGACGATGCTATAACCATGA+AGG | 0.618583 | 7.1:-55831120 | MS.gene36204:CDS |
ACGGAAACGAGATGGTGAGG+AGG | 0.620190 | 7.1:+55830380 | None:intergenic |
TCTTTGAGGCACAAAATCCG+TGG | 0.623067 | 7.1:+55831210 | None:intergenic |
GCCGACGAACGGAAACGAGA+TGG | 0.629314 | 7.1:+55830372 | None:intergenic |
GTGAAGGAATCATACATTGG+AGG | 0.630231 | 7.1:+55831017 | None:intergenic |
TCTGTTGCAGTAAGCAACCA+CGG | 0.633347 | 7.1:-55831227 | MS.gene36204:intron |
GTTCCCATCAAATTCAAGAG+TGG | 0.635042 | 7.1:-55830664 | MS.gene36204:CDS |
CATTGATGTTGCAATGGAGA+TGG | 0.635779 | 7.1:-55828787 | MS.gene36204:CDS |
TCTAAATGGTCTTACTCACA+TGG | 0.638764 | 7.1:+55828612 | None:intergenic |
TTTCCTATGACTTTCTTCAG+CGG | 0.641453 | 7.1:+55829040 | None:intergenic |
GATTTGGAGATCAAACCAGA+GGG | 0.644983 | 7.1:+55830960 | None:intergenic |
CAAGTGAAAATTGGTGACCA+TGG | 0.650732 | 7.1:-55829565 | MS.gene36204:CDS |
GATATACAAGAAAGTGACAT+CGG | 0.656486 | 7.1:-55829162 | MS.gene36204:CDS |
CGAACGGAAACGAGATGGTG+AGG | 0.657048 | 7.1:+55830377 | None:intergenic |
GTTTCATGAGATCTTGTTCG+GGG | 0.658022 | 7.1:-55831451 | None:intergenic |
TGTGCCTCAAAGAAACAATG+GGG | 0.671784 | 7.1:-55831200 | MS.gene36204:CDS |
GGATTTGGAGATCAAACCAG+AGG | 0.684632 | 7.1:+55830959 | None:intergenic |
CGATCTGGAGACACAAACGA+CGG | 0.766481 | 7.1:+55830342 | None:intergenic |
ATTTGGAGATCAAACCAGAG+GGG | 0.782695 | 7.1:+55830961 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATATTATGAGAAAAC+AGG | - | chr7.1:55829466-55829485 | MS.gene36204:intron | 15.0% |
!! | AATATGAAGAAAATATTGTT+AGG | + | chr7.1:55831206-55831225 | None:intergenic | 15.0% |
!! | CTAACAAATTCTTAATTAAT+TGG | - | chr7.1:55829221-55829240 | MS.gene36204:CDS | 15.0% |
!! | GTAATTTATTATATATACGT+AGG | - | chr7.1:55829293-55829312 | MS.gene36204:CDS | 15.0% |
!!! | AAAATTTCTTATTTTGTGTT+AGG | - | chr7.1:55830749-55830768 | MS.gene36204:CDS | 15.0% |
!!! | AAGTAACATTTTATGTTTTA+GGG | - | chr7.1:55830985-55831004 | MS.gene36204:CDS | 15.0% |
!!! | AGTTATTAATTTGAATTACT+TGG | - | chr7.1:55829952-55829971 | MS.gene36204:intron | 15.0% |
!!! | TAAGTAACATTTTATGTTTT+AGG | - | chr7.1:55830984-55831003 | MS.gene36204:CDS | 15.0% |
!! | ATCATATTTGCAATATCTAA+AGG | + | chr7.1:55831337-55831356 | None:intergenic | 20.0% |
!! | GAAAAAGGAATTATTAAAGA+TGG | - | chr7.1:55829022-55829041 | MS.gene36204:CDS | 20.0% |
!! | TATCAATTATTTCATCAAAG+AGG | + | chr7.1:55830312-55830331 | None:intergenic | 20.0% |
!! | TTCGTTCAAGATTTATAATA+TGG | - | chr7.1:55828776-55828795 | MS.gene36204:CDS | 20.0% |
!!! | ACATTGATGATATATACTAA+AGG | - | chr7.1:55829316-55829335 | MS.gene36204:intron | 20.0% |
!!! | AGTAACATTTTATGTTTTAG+GGG | - | chr7.1:55830986-55831005 | MS.gene36204:CDS | 20.0% |
!!! | CAAATATGTTATCACATTTT+AGG | + | chr7.1:55830467-55830486 | None:intergenic | 20.0% |
!!! | CATAATATTTTTTATGATGC+TGG | + | chr7.1:55829459-55829478 | None:intergenic | 20.0% |
!!! | TATTTTCTTCATATTAATGC+AGG | - | chr7.1:55831211-55831230 | MS.gene36204:CDS | 20.0% |
! | ATTGATCATATTTGAACATG+TGG | + | chr7.1:55831414-55831433 | None:intergenic | 25.0% |
! | ATTTGAATTACTTGGAATAG+AGG | - | chr7.1:55829960-55829979 | MS.gene36204:intron | 25.0% |
! | CATGTTCAAATATGATCAAT+TGG | - | chr7.1:55831414-55831433 | MS.gene36204:intron | 25.0% |
! | CTTAAATATTTCAACCTTCA+TGG | + | chr7.1:55828966-55828985 | None:intergenic | 25.0% |
! | GAAGGTTGAAATATTTAAGA+TGG | - | chr7.1:55828967-55828986 | MS.gene36204:intron | 25.0% |
! | TGTGATAACATATTTGTCAA+TGG | - | chr7.1:55830471-55830490 | MS.gene36204:intron | 25.0% |
! | TTTACAAGCAATAAAGAGTT+GGG | - | chr7.1:55830377-55830396 | MS.gene36204:CDS | 25.0% |
!! | AAATATTTCGCGTTTTCTTA+AGG | + | chr7.1:55830217-55830236 | None:intergenic | 25.0% |
!! | TAGTATTTTCTCTTTCACTA+GGG | - | chr7.1:55830641-55830660 | MS.gene36204:CDS | 25.0% |
!! | TTAGTATTTTCTCTTTCACT+AGG | - | chr7.1:55830640-55830659 | MS.gene36204:CDS | 25.0% |
!!! | AACATCTTTTAGCTGATTTT+GGG | - | chr7.1:55829523-55829542 | MS.gene36204:CDS | 25.0% |
!!! | TGATTTTAGCTCGATATTAA+AGG | + | chr7.1:55830689-55830708 | None:intergenic | 25.0% |
!!! | TGTAGAAAACTTCAAGTTTT+TGG | - | chr7.1:55829616-55829635 | MS.gene36204:intron | 25.0% |
AAACTAGACCTTGTAAGATT+TGG | + | chr7.1:55830407-55830426 | None:intergenic | 30.0% | |
AAGAATTGGAGATTTCTGAT+TGG | - | chr7.1:55831308-55831327 | MS.gene36204:intron | 30.0% | |
AATGGAGATGGTAAAAGAAT+TGG | - | chr7.1:55831294-55831313 | MS.gene36204:intron | 30.0% | |
ACAAACAACAAAGCAAAACA+CGG | + | chr7.1:55829782-55829801 | None:intergenic | 30.0% | |
AGAAAGATAGTATCATCTTC+AGG | + | chr7.1:55831062-55831081 | None:intergenic | 30.0% | |
AGAATTGGAGATTTCTGATT+GGG | - | chr7.1:55831309-55831328 | MS.gene36204:intron | 30.0% | |
AGTATCAGTGAGAATATCAA+AGG | + | chr7.1:55831260-55831279 | None:intergenic | 30.0% | |
ATATTTGTCAATGGTCATCT+TGG | - | chr7.1:55830480-55830499 | MS.gene36204:intron | 30.0% | |
GAACTTAATGAAGCAGAAAA+AGG | - | chr7.1:55829007-55829026 | MS.gene36204:CDS | 30.0% | |
GATATACAAGAAAGTGACAT+CGG | - | chr7.1:55830907-55830926 | MS.gene36204:intron | 30.0% | |
GTATCAGTGAGAATATCAAA+GGG | + | chr7.1:55831259-55831278 | None:intergenic | 30.0% | |
GTTTACAAGCAATAAAGAGT+TGG | - | chr7.1:55830376-55830395 | MS.gene36204:CDS | 30.0% | |
TAAAGGACTTGATTCAGATT+TGG | - | chr7.1:55829333-55829352 | MS.gene36204:intron | 30.0% | |
TATTCTTCCTCATACATTTC+CGG | + | chr7.1:55830794-55830813 | None:intergenic | 30.0% | |
! | ACTTGTTAACTTCTCAAAGA+CGG | - | chr7.1:55829081-55829100 | MS.gene36204:intron | 30.0% |
! | CAAGGTCTAGTTTATTTACA+TGG | - | chr7.1:55830414-55830433 | MS.gene36204:CDS | 30.0% |
! | GGATTAGTACATTCACTATA+TGG | + | chr7.1:55830881-55830900 | None:intergenic | 30.0% |
! | TTTTGGTCTCAAAAACATCA+TGG | - | chr7.1:55829633-55829652 | MS.gene36204:intron | 30.0% |
!! | ACATCTTTTAGCTGATTTTG+GGG | - | chr7.1:55829524-55829543 | MS.gene36204:CDS | 30.0% |
!! | CAATCATTTTTCCATCTATG+TGG | + | chr7.1:55831385-55831404 | None:intergenic | 30.0% |
!! | GAACATCTTTTAGCTGATTT+TGG | - | chr7.1:55829522-55829541 | MS.gene36204:CDS | 30.0% |
!! | TTATTTTGTGTTAGGAACAC+CGG | - | chr7.1:55830757-55830776 | MS.gene36204:CDS | 30.0% |
!!! | TATCACATTTTAGGTTCCTA+TGG | + | chr7.1:55830458-55830477 | None:intergenic | 30.0% |
!!! | TGCTTTGTTGTTTGTTGTTT+TGG | - | chr7.1:55829787-55829806 | MS.gene36204:intron | 30.0% |
ACTTTCTTGTATATCTGTGC+TGG | + | chr7.1:55830902-55830921 | None:intergenic | 35.0% | |
ATCTCCATTGCAACATCAAT+GGG | + | chr7.1:55831283-55831302 | None:intergenic | 35.0% | |
CAAGTGAAGGAATCATACAT+TGG | + | chr7.1:55829058-55829077 | None:intergenic | 35.0% | |
CAATCAGCTCATAGTGTTAT+AGG | - | chr7.1:55830552-55830571 | MS.gene36204:intron | 35.0% | |
CAATGTATGATTCCTTCACT+TGG | - | chr7.1:55829056-55829075 | MS.gene36204:CDS | 35.0% | |
CATCCACTCTTGAATTTGAT+GGG | + | chr7.1:55829411-55829430 | None:intergenic | 35.0% | |
CATCTTGGACAAGTGAAAAT+TGG | - | chr7.1:55830495-55830514 | MS.gene36204:intron | 35.0% | |
GAGGAAGAATACAATGAACT+TGG | - | chr7.1:55830803-55830822 | MS.gene36204:intron | 35.0% | |
GTGATAGAGACTGGTATTAT+AGG | - | chr7.1:55829143-55829162 | MS.gene36204:intron | 35.0% | |
GTTACAGAAATGTTCACATC+AGG | - | chr7.1:55830141-55830160 | MS.gene36204:intron | 35.0% | |
TAATGCTGCAGCTAACAAAT+TGG | - | chr7.1:55829377-55829396 | MS.gene36204:intron | 35.0% | |
TTACTCGCTTATATTTCCTC+TGG | + | chr7.1:55830356-55830375 | None:intergenic | 35.0% | |
TTGTGCCTCAAAGAAACAAT+GGG | - | chr7.1:55828868-55828887 | MS.gene36204:intron | 35.0% | |
TTTCCTATGACTTTCTTCAG+CGG | + | chr7.1:55831032-55831051 | None:intergenic | 35.0% | |
TTTGCAACATCGAAAGTCAT+TGG | + | chr7.1:55830592-55830611 | None:intergenic | 35.0% | |
TTTGTGCCTCAAAGAAACAA+TGG | - | chr7.1:55828867-55828886 | MS.gene36204:intron | 35.0% | |
! | AAATCCCCATTGTTTCTTTG+AGG | + | chr7.1:55828876-55828895 | None:intergenic | 35.0% |
! | GATAATTTTCGAACACGTTC+AGG | - | chr7.1:55830328-55830347 | MS.gene36204:CDS | 35.0% |
! | TTTAGGTTCCTATGGATTAC+AGG | + | chr7.1:55830450-55830469 | None:intergenic | 35.0% |
!! | CTTGGTGATGTTTACTCATT+TGG | - | chr7.1:55830821-55830840 | MS.gene36204:intron | 35.0% |
ACATCGGTAAATTCACGTTC+TGG | - | chr7.1:55830923-55830942 | MS.gene36204:intron | 40.0% | |
ACTCAGAGAGATGAAGTTTG+AGG | + | chr7.1:55829663-55829682 | None:intergenic | 40.0% | |
AGCAGCAGCTGGATATATTA+AGG | - | chr7.1:55828928-55828947 | MS.gene36204:intron | 40.0% | |
ATCACCAACAGTGAAGGATT+TGG | + | chr7.1:55829128-55829147 | None:intergenic | 40.0% | |
ATCTCCAAATCCTTCACTGT+TGG | - | chr7.1:55829121-55829140 | MS.gene36204:intron | 40.0% | |
ATGATCCACCTGTAATCCAT+AGG | - | chr7.1:55830439-55830458 | MS.gene36204:CDS | 40.0% | |
ATTTGGAGATCAAACCAGAG+GGG | + | chr7.1:55829111-55829130 | None:intergenic | 40.0% | |
CATCTCCATTGCAACATCAA+TGG | + | chr7.1:55831284-55831303 | None:intergenic | 40.0% | |
CATTGATGTTGCAATGGAGA+TGG | - | chr7.1:55831282-55831301 | MS.gene36204:intron | 40.0% | |
CTCATTTGGCATGTGTGTAT+TGG | - | chr7.1:55830835-55830854 | MS.gene36204:intron | 40.0% | |
CTTCAGCGGAAAAATGACAT+TGG | + | chr7.1:55831018-55831037 | None:intergenic | 40.0% | |
GATTTGGAGATCAAACCAGA+GGG | + | chr7.1:55829112-55829131 | None:intergenic | 40.0% | |
GCATCCACTCTTGAATTTGA+TGG | + | chr7.1:55829412-55829431 | None:intergenic | 40.0% | |
GCTGCAGCATTAAAGTTAGA+TGG | + | chr7.1:55829369-55829388 | None:intergenic | 40.0% | |
GTGAAGGAATCATACATTGG+AGG | + | chr7.1:55829055-55829074 | None:intergenic | 40.0% | |
GTTAACAAGTCTCCAAGTGA+AGG | + | chr7.1:55829071-55829090 | None:intergenic | 40.0% | |
GTTCCCATCAAATTCAAGAG+TGG | - | chr7.1:55829405-55829424 | MS.gene36204:intron | 40.0% | |
TACTCCCATTGATGTTGCAA+TGG | - | chr7.1:55831276-55831295 | MS.gene36204:intron | 40.0% | |
TACTTGGAATAGAGGTAGCA+TGG | - | chr7.1:55829968-55829987 | MS.gene36204:intron | 40.0% | |
TATGAGCTGATTGAGAACCT+TGG | + | chr7.1:55830545-55830564 | None:intergenic | 40.0% | |
TCAATTGGAGATATCTGCCT+TGG | - | chr7.1:55831429-55831448 | MS.gene36204:intron | 40.0% | |
TCATGCGATTCTACACATCT+TGG | - | chr7.1:55830088-55830107 | MS.gene36204:intron | 40.0% | |
TGTGCCTCAAAGAAACAATG+GGG | - | chr7.1:55828869-55828888 | MS.gene36204:intron | 40.0% | |
TTTCCGCTGAAGAAAGTCAT+AGG | - | chr7.1:55831026-55831045 | MS.gene36204:CDS | 40.0% | |
! | CAAGTGAAAATTGGTGACCA+TGG | - | chr7.1:55830504-55830523 | MS.gene36204:intron | 40.0% |
! | CTGCACTTTTACCACATAGA+TGG | - | chr7.1:55831371-55831390 | MS.gene36204:intron | 40.0% |
! | TATGGATTACAGGTGGATCA+TGG | + | chr7.1:55830440-55830459 | None:intergenic | 40.0% |
GGACGATGCTATAACCATGA+AGG | - | chr7.1:55828949-55828968 | MS.gene36204:intron | 45.0% | |
GGATTTGGAGATCAAACCAG+AGG | + | chr7.1:55829113-55829132 | None:intergenic | 45.0% | |
GTCTCTATCACCAACAGTGA+AGG | + | chr7.1:55829134-55829153 | None:intergenic | 45.0% | |
GTGGTTACAATCTGGATCTG+CGG | - | chr7.1:55828665-55828684 | MS.gene36204:CDS | 45.0% | |
TCTGTTGCAGTAAGCAACCA+CGG | - | chr7.1:55828842-55828861 | MS.gene36204:intron | 45.0% | |
TGGTTACAATCTGGATCTGC+GGG | - | chr7.1:55828666-55828685 | MS.gene36204:CDS | 45.0% | |
TGTAGAATCGCATGATCGAC+CGG | + | chr7.1:55830083-55830102 | None:intergenic | 45.0% | |
! | AGGTTCCTATGGATTACAGG+TGG | + | chr7.1:55830447-55830466 | None:intergenic | 45.0% |
! | TGATTTGCAGCGCCTTTACT+CGG | - | chr7.1:55830029-55830048 | MS.gene36204:intron | 45.0% |
!! | TAAAGGCGCTGCAAATCAAC+TGG | + | chr7.1:55830027-55830046 | None:intergenic | 45.0% |
!! | TCACTGTTGGTGATAGAGAC+TGG | - | chr7.1:55829134-55829153 | MS.gene36204:intron | 45.0% |
!! | TCTTTGAGGCACAAAATCCG+TGG | + | chr7.1:55828862-55828881 | None:intergenic | 45.0% |
!!! | GATCTAGCTTTTGGGTTGGT+GGG | - | chr7.1:55828643-55828662 | MS.gene36204:CDS | 45.0% |
ACCATCTCGTTTCCGTTCGT+CGG | - | chr7.1:55829696-55829715 | MS.gene36204:intron | 50.0% | |
CGATCTGGAGACACAAACGA+CGG | + | chr7.1:55829730-55829749 | None:intergenic | 50.0% | |
GAAACGCTCGGAAAACACTG+CGG | + | chr7.1:55828719-55828738 | None:intergenic | 50.0% | |
GAACCAAGTCAGACTCAACG+AGG | - | chr7.1:55829990-55830009 | MS.gene36204:intron | 50.0% | |
GAACTCAATGAAGCAGCAGC+TGG | - | chr7.1:55828917-55828936 | MS.gene36204:intron | 50.0% | |
GGAGAATTGCAGCTAGTCCA+TGG | + | chr7.1:55830524-55830543 | None:intergenic | 50.0% | |
GGAGATGAACCTCCGAGTAA+AGG | + | chr7.1:55830044-55830063 | None:intergenic | 50.0% | |
GTACCTCGTTGAGTCTGACT+TGG | + | chr7.1:55829996-55830015 | None:intergenic | 50.0% | |
GTTAGGAACACCGGAGTTCA+TGG | - | chr7.1:55830766-55830785 | MS.gene36204:intron | 50.0% | |
TCCTAAGCACACTCAAGCAC+CGG | - | chr7.1:55830061-55830080 | MS.gene36204:intron | 50.0% | |
TGGAGATATCTGCCTTGGAC+TGG | - | chr7.1:55831434-55831453 | MS.gene36204:intron | 50.0% | |
TTACTCACATGGCCAGTCCA+AGG | + | chr7.1:55831449-55831468 | None:intergenic | 50.0% | |
! | ATCTGCGGGACTCTGTTTTG+TGG | - | chr7.1:55828680-55828699 | MS.gene36204:CDS | 50.0% |
! | CATGGCACCGGAAATGTATG+AGG | - | chr7.1:55830784-55830803 | MS.gene36204:intron | 50.0% |
! | GTTGGTGGGTGGTTACAATC+TGG | - | chr7.1:55828657-55828676 | MS.gene36204:CDS | 50.0% |
!! | ATTTCCGGTGCCATGAACTC+CGG | + | chr7.1:55830779-55830798 | None:intergenic | 50.0% |
!! | GGACTAGCTGCAATTCTCCA+AGG | - | chr7.1:55830525-55830544 | MS.gene36204:intron | 50.0% |
!!! | GGATCTAGCTTTTGGGTTGG+TGG | - | chr7.1:55828642-55828661 | MS.gene36204:CDS | 50.0% |
!!! | GGTGGATCTAGCTTTTGGGT+TGG | - | chr7.1:55828639-55828658 | MS.gene36204:CDS | 50.0% |
!!! | TCGGGGTGGATCTAGCTTTT+GGG | - | chr7.1:55828635-55828654 | MS.gene36204:CDS | 50.0% |
!!! | TTCGGGGTGGATCTAGCTTT+TGG | - | chr7.1:55828634-55828653 | MS.gene36204:CDS | 50.0% |
AACACCGGAGTTCATGGCAC+CGG | - | chr7.1:55830772-55830791 | MS.gene36204:intron | 55.0% | |
ACCGGTGCTTGAGTGTGCTT+AGG | + | chr7.1:55830065-55830084 | None:intergenic | 55.0% | |
ACGGAAACGAGATGGTGAGG+AGG | + | chr7.1:55829692-55829711 | None:intergenic | 55.0% | |
CGAACACGTTCAGGTACCAG+AGG | - | chr7.1:55830337-55830356 | MS.gene36204:CDS | 55.0% | |
CGAACGGAAACGAGATGGTG+AGG | + | chr7.1:55829695-55829714 | None:intergenic | 55.0% | |
CGACGAAGAGGAGAAACGCT+CGG | + | chr7.1:55828731-55828750 | None:intergenic | 55.0% | |
CGAGCGTTTCTCCTCTTCGT+CGG | - | chr7.1:55828729-55828748 | MS.gene36204:CDS | 55.0% | |
CGGAAACGAGATGGTGAGGA+GGG | + | chr7.1:55829691-55829710 | None:intergenic | 55.0% | |
CGTTTCTCCTCTTCGTCGGT+GGG | - | chr7.1:55828733-55828752 | MS.gene36204:CDS | 55.0% | |
CGTTTGTGTCTCCAGATCGC+CGG | - | chr7.1:55829731-55829750 | MS.gene36204:intron | 55.0% | |
CTCCACAACCAAACGACGAC+CGG | + | chr7.1:55829753-55829772 | None:intergenic | 55.0% | |
TCAAAGACGGATCACCCCTC+TGG | - | chr7.1:55829094-55829113 | MS.gene36204:intron | 55.0% | |
TGGGCGCGCCAAATCTTACA+AGG | - | chr7.1:55830396-55830415 | MS.gene36204:CDS | 55.0% | |
TTTGCAGCGCCTTTACTCGG+AGG | - | chr7.1:55830032-55830051 | MS.gene36204:intron | 55.0% | |
!!! | CTAGCTTTTGGGTTGGTGGG+TGG | - | chr7.1:55828646-55828665 | MS.gene36204:CDS | 55.0% |
CGGTCGTCGTTTGGTTGTGG+AGG | - | chr7.1:55829751-55829770 | MS.gene36204:intron | 60.0% | |
GCCGACGAACGGAAACGAGA+TGG | + | chr7.1:55829700-55829719 | None:intergenic | 60.0% | |
GCGTTTCTCCTCTTCGTCGG+TGG | - | chr7.1:55828732-55828751 | MS.gene36204:CDS | 60.0% | |
TCTCCTCTTCGTCGGTGGGT+TGG | - | chr7.1:55828737-55828756 | MS.gene36204:CDS | 60.0% | |
!! | TTCGTCGGTGGGTTGGTGGT+CGG | - | chr7.1:55828744-55828763 | MS.gene36204:CDS | 60.0% |
ACGGCGTTGCTGCCGACGAA+CGG | + | chr7.1:55829711-55829730 | None:intergenic | 65.0% | |
CCAAACGACGACCGGCGATC+TGG | + | chr7.1:55829745-55829764 | None:intergenic | 65.0% | |
CCACCAACCCACCGACGAAG+AGG | + | chr7.1:55828743-55828762 | None:intergenic | 65.0% | |
CCAGATCGCCGGTCGTCGTT+TGG | - | chr7.1:55829742-55829761 | MS.gene36204:intron | 65.0% | |
CGCCGGTCGTCGTTTGGTTG+TGG | - | chr7.1:55829748-55829767 | MS.gene36204:intron | 65.0% | |
!! | CCTCTTCGTCGGTGGGTTGG+TGG | - | chr7.1:55828740-55828759 | MS.gene36204:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 55828623 | 55831468 | 55828623 | ID=MS.gene36204 |
chr7.1 | mRNA | 55828623 | 55831468 | 55828623 | ID=MS.gene36204.t1;Parent=MS.gene36204 |
chr7.1 | exon | 55831452 | 55831468 | 55831452 | ID=MS.gene36204.t1.exon1;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55831452 | 55831468 | 55831452 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55831326 | 55831369 | 55831326 | ID=MS.gene36204.t1.exon2;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55831326 | 55831369 | 55831326 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55830936 | 55831239 | 55830936 | ID=MS.gene36204.t1.exon3;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55830936 | 55831239 | 55830936 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55830604 | 55830776 | 55830604 | ID=MS.gene36204.t1.exon4;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55830604 | 55830776 | 55830604 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55830296 | 55830470 | 55830296 | ID=MS.gene36204.t1.exon5;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55830296 | 55830470 | 55830296 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55829518 | 55829630 | 55829518 | ID=MS.gene36204.t1.exon6;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55829518 | 55829630 | 55829518 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55829147 | 55829320 | 55829147 | ID=MS.gene36204.t1.exon7;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55829147 | 55829320 | 55829147 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55828984 | 55829085 | 55828984 | ID=MS.gene36204.t1.exon8;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55828984 | 55829085 | 55828984 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
chr7.1 | exon | 55828623 | 55828858 | 55828623 | ID=MS.gene36204.t1.exon9;Parent=MS.gene36204.t1 |
chr7.1 | CDS | 55828623 | 55828858 | 55828623 | ID=cds.MS.gene36204.t1;Parent=MS.gene36204.t1 |
Gene Sequence |
Protein sequence |