Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36278.t1 | XP_003597798.2 | 87.9 | 413 | 46 | 3 | 1 | 412 | 1 | 410 | 3.40E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36278.t1 | Q5KQI4 | 43.4 | 281 | 146 | 6 | 4 | 282 | 6 | 275 | 8.0e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36278.t1 | G7IMD4 | 87.9 | 413 | 46 | 3 | 1 | 412 | 1 | 410 | 2.5e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene36278.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36278.t1 | MTR_2g102450 | 91.041 | 413 | 33 | 3 | 1 | 412 | 1 | 410 | 0.0 | 716 |
| MS.gene36278.t1 | MTR_2g102450 | 79.177 | 413 | 28 | 5 | 1 | 412 | 1 | 356 | 0.0 | 591 |
| MS.gene36278.t1 | MTR_4g008310 | 78.531 | 177 | 38 | 0 | 55 | 231 | 128 | 304 | 2.58e-86 | 266 |
| MS.gene36278.t1 | MTR_3g101520 | 41.921 | 229 | 127 | 2 | 9 | 237 | 5 | 227 | 3.08e-48 | 164 |
| MS.gene36278.t1 | MTR_3g101520 | 42.358 | 229 | 118 | 4 | 9 | 237 | 5 | 219 | 7.19e-48 | 163 |
| MS.gene36278.t1 | MTR_4g101970 | 32.692 | 260 | 101 | 7 | 184 | 392 | 51 | 287 | 1.23e-20 | 93.2 |
| MS.gene36278.t1 | MTR_1g035460 | 38.384 | 99 | 56 | 3 | 137 | 233 | 192 | 287 | 1.45e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36278.t1 | AT5G58280 | 47.036 | 253 | 102 | 4 | 12 | 237 | 5 | 252 | 1.68e-65 | 211 |
| MS.gene36278.t1 | AT5G58280 | 46.032 | 252 | 107 | 3 | 12 | 237 | 5 | 253 | 8.19e-65 | 210 |
| MS.gene36278.t1 | AT5G58280 | 46.121 | 232 | 109 | 4 | 12 | 240 | 5 | 223 | 4.91e-59 | 194 |
| MS.gene36278.t1 | AT3G19184 | 42.683 | 246 | 127 | 4 | 12 | 255 | 8 | 241 | 2.45e-47 | 163 |
| MS.gene36278.t1 | AT3G19184 | 42.683 | 246 | 127 | 4 | 12 | 255 | 8 | 241 | 3.22e-47 | 163 |
| MS.gene36278.t1 | AT5G42700 | 41.228 | 228 | 117 | 4 | 10 | 234 | 7 | 220 | 6.31e-44 | 153 |
| MS.gene36278.t1 | AT5G42700 | 53.333 | 120 | 55 | 1 | 116 | 234 | 56 | 175 | 1.70e-36 | 132 |
Find 0 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATATAAATTTATTGA+AGG | + | 15225:49033-49052 | MS.gene36278:intron | 10.0% |
| !! | TAGAACAAATAAATTTATAT+TGG | - | 15225:48998-49017 | None:intergenic | 10.0% |
| !! | TTAAAATCTTCAAATTTAAA+AGG | + | 15225:48598-48617 | MS.gene36278:intron | 10.0% |
| !!! | GATTTTAAAATATTACAAAA+AGG | - | 15225:48586-48605 | None:intergenic | 10.0% |
| !!! | TCAAAATAATTAACTTATTT+TGG | + | 15225:48381-48400 | MS.gene36278:intron | 10.0% |
| !! | AATTTATTGAAGGTTAATTT+AGG | + | 15225:49043-49062 | MS.gene36278:intron | 15.0% |
| !! | AGTAGAAAAATATAAATACT+AGG | + | 15225:47366-47385 | MS.gene36278:intron | 15.0% |
| !! | ATTTATTTGTTCTATAAGAA+AGG | + | 15225:49004-49023 | MS.gene36278:intron | 15.0% |
| !!! | AAACTTGCAATTTTTTTATT+TGG | + | 15225:47053-47072 | MS.gene36278:intron | 15.0% |
| !! | ATACTAGTCAAAAACTTTAA+GGG | - | 15225:46552-46571 | None:intergenic | 20.0% |
| !! | ATATAAATACTAGGAATATG+TGG | + | 15225:47375-47394 | MS.gene36278:intron | 20.0% |
| !! | ATATTATCTTTATGTTGTCA+GGG | + | 15225:48026-48045 | MS.gene36278:intron | 20.0% |
| !! | ATATTTGAATTCAAGAATCA+AGG | - | 15225:47497-47516 | None:intergenic | 20.0% |
| !! | TATACTAGTCAAAAACTTTA+AGG | - | 15225:46553-46572 | None:intergenic | 20.0% |
| !! | TATATTATCTTTATGTTGTC+AGG | + | 15225:48025-48044 | MS.gene36278:intron | 20.0% |
| !! | TATTTCACTTTATTACAGTT+TGG | + | 15225:47571-47590 | MS.gene36278:intron | 20.0% |
| !! | TTAGATATTCCATTATACAA+AGG | - | 15225:47327-47346 | None:intergenic | 20.0% |
| !! | TTATCATTTGTAAAATGCTT+AGG | + | 15225:46266-46285 | MS.gene36278:intron | 20.0% |
| !! | TTTGATATATACTACTCAAT+CGG | - | 15225:46520-46539 | None:intergenic | 20.0% |
| !!! | AAATCAAGGTTTTAAAATAG+TGG | + | 15225:46305-46324 | MS.gene36278:intron | 20.0% |
| !!! | TACTTTTAGGGTTAAAATTA+CGG | + | 15225:48946-48965 | MS.gene36278:intron | 20.0% |
| !!! | TTTAGATTTTTTGATTGCTT+TGG | - | 15225:49442-49461 | None:intergenic | 20.0% |
| ! | AAAAAACTTGACAACTATCA+AGG | + | 15225:46365-46384 | MS.gene36278:intron | 25.0% |
| ! | AAAGAAAACTAGAATGCAAA+AGG | + | 15225:49485-49504 | MS.gene36278:CDS | 25.0% |
| ! | AAATTGAAATGTTAGTGACA+TGG | + | 15225:47700-47719 | MS.gene36278:intron | 25.0% |
| ! | AAGAAGAAACTCAATATCAA+AGG | - | 15225:48548-48567 | None:intergenic | 25.0% |
| ! | AATAATAACTAAAACCAGCT+TGG | + | 15225:48340-48359 | MS.gene36278:intron | 25.0% |
| ! | AATATTCAAGAGTTTCATGT+TGG | + | 15225:46753-46772 | MS.gene36278:intron | 25.0% |
| ! | AATTGTAATAGAATCCAACT+AGG | - | 15225:46813-46832 | None:intergenic | 25.0% |
| ! | ACATTTACACTACTCAATAT+AGG | - | 15225:46725-46744 | None:intergenic | 25.0% |
| ! | ATTGAATCACCTTTGTATAA+TGG | + | 15225:47315-47334 | MS.gene36278:intron | 25.0% |
| ! | ATTTGAAAATATAGGTGTAG+AGG | + | 15225:49365-49384 | MS.gene36278:CDS | 25.0% |
| ! | ATTTGCAAACAAAAAACAAG+TGG | - | 15225:49181-49200 | None:intergenic | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | + | 15225:48181-48200 | MS.gene36278:CDS | 25.0% |
| ! | CCAAAATAGTTGTTATAACT+AGG | + | 15225:48887-48906 | MS.gene36278:intron | 25.0% |
| ! | GAACAAAATATAAGACACTA+AGG | - | 15225:46917-46936 | None:intergenic | 25.0% |
| ! | TAAGATTATCTCAAACAAAG+TGG | - | 15225:46238-46257 | None:intergenic | 25.0% |
| ! | TGAATATCAAAGTTCATTAG+TGG | - | 15225:48498-48517 | None:intergenic | 25.0% |
| ! | TGACCAAATTAATTCTTACA+AGG | + | 15225:48664-48683 | MS.gene36278:intron | 25.0% |
| ! | TTGATATATACTACTCAATC+GGG | - | 15225:46519-46538 | None:intergenic | 25.0% |
| ! | TTTCATGTTGAATGAAATCA+AGG | + | 15225:46291-46310 | MS.gene36278:intron | 25.0% |
| ! | TTTGCAAACAAAAAACAAGT+GGG | - | 15225:49180-49199 | None:intergenic | 25.0% |
| !! | AAGCCTTGTAAGAATTAATT+TGG | - | 15225:48670-48689 | None:intergenic | 25.0% |
| !! | AATTCTCATACTTTTGTCTT+AGG | - | 15225:47417-47436 | None:intergenic | 25.0% |
| !! | ATATCTAAAGCTAGTATGAA+TGG | + | 15225:47339-47358 | MS.gene36278:intron | 25.0% |
| !! | ATTCTCATACTTTTGTCTTA+GGG | - | 15225:47416-47435 | None:intergenic | 25.0% |
| !! | CCTAGTTATAACAACTATTT+TGG | - | 15225:48890-48909 | None:intergenic | 25.0% |
| !! | GTTAGAGCATTTGAAAATAT+AGG | + | 15225:49357-49376 | MS.gene36278:CDS | 25.0% |
| !! | GTTTTGTCAAAAACAAATCA+TGG | - | 15225:48414-48433 | None:intergenic | 25.0% |
| !! | TGATAATAGTTGTGATAATG+AGG | + | 15225:46839-46858 | MS.gene36278:intron | 25.0% |
| !! | TTTTTGACAAAACTAAACTG+TGG | + | 15225:48421-48440 | MS.gene36278:intron | 25.0% |
| !!! | AACTTTTGGAGTTTACTTTT+AGG | + | 15225:48933-48952 | MS.gene36278:intron | 25.0% |
| !!! | AATTTAAGTTTCTAGTCTTG+AGG | + | 15225:48447-48466 | MS.gene36278:intron | 25.0% |
| !!! | ACAAGATTAGTCATTGATTT+TGG | - | 15225:47154-47173 | None:intergenic | 25.0% |
| !!! | ACCATTTTAGAATTTGAGAA+GGG | - | 15225:48746-48765 | None:intergenic | 25.0% |
| !!! | ACTTTTGGAGTTTACTTTTA+GGG | + | 15225:48934-48953 | MS.gene36278:intron | 25.0% |
| !!! | AGATGATAAGTTTGTTTTAG+AGG | + | 15225:48088-48107 | MS.gene36278:CDS | 25.0% |
| !!! | TACCATTTTAGAATTTGAGA+AGG | - | 15225:48747-48766 | None:intergenic | 25.0% |
| !!! | TGGTAATAGATTTGATAATG+AGG | + | 15225:46773-46792 | MS.gene36278:intron | 25.0% |
| !!! | TTTGTTTTAGAGGATGAAAA+AGG | + | 15225:48098-48117 | MS.gene36278:CDS | 25.0% |
| !!! | TTTTGCATTCTAGTTTTCTT+TGG | - | 15225:49486-49505 | None:intergenic | 25.0% |
| AAAAAAAAACCACACAACAC+TGG | - | 15225:47459-47478 | None:intergenic | 30.0% | |
| AAAAGAAGAAATCGATGCTT+TGG | + | 15225:49392-49411 | MS.gene36278:CDS | 30.0% | |
| AAAATTCAAGATTTCCGTGT+TGG | + | 15225:46585-46604 | MS.gene36278:intron | 30.0% | |
| AAATGTTAGTGACATGGTTA+TGG | + | 15225:47706-47725 | MS.gene36278:intron | 30.0% | |
| AAGAATCAAGGAATTCTCAA+AGG | - | 15225:47485-47504 | None:intergenic | 30.0% | |
| AATGTTAGTGACATGGTTAT+GGG | + | 15225:47707-47726 | MS.gene36278:intron | 30.0% | |
| ACAAACTTATCATCTGTCTT+TGG | - | 15225:48083-48102 | None:intergenic | 30.0% | |
| ACATAAAAAACTTGATGCTG+TGG | + | 15225:46699-46718 | MS.gene36278:intron | 30.0% | |
| ACATTGAAGAATGAACAACA+AGG | - | 15225:47953-47972 | None:intergenic | 30.0% | |
| ACTTCCATATGAATTCTGTT+AGG | - | 15225:49297-49316 | None:intergenic | 30.0% | |
| AGAAACATCAAAAACCTAGA+TGG | + | 15225:46457-46476 | MS.gene36278:intron | 30.0% | |
| AGAATCAAGGAATTCTCAAA+GGG | - | 15225:47484-47503 | None:intergenic | 30.0% | |
| ATCAATGACTAATCTTGTTC+TGG | + | 15225:47156-47175 | MS.gene36278:CDS | 30.0% | |
| ATGATAGTTTGAACTTTGCA+AGG | - | 15225:47248-47267 | None:intergenic | 30.0% | |
| CAACTCTCTTATAACTTCAA+AGG | + | 15225:48279-48298 | MS.gene36278:intron | 30.0% | |
| CTAAATCCTTGAGAACAAAA+GGG | - | 15225:46972-46991 | None:intergenic | 30.0% | |
| GACATATCACTAGTAAATGT+GGG | - | 15225:48868-48887 | None:intergenic | 30.0% | |
| GATTTAACAGTTTCAGACTT+TGG | - | 15225:49534-49553 | None:intergenic | 30.0% | |
| TAAATCCTTGAGAACAAAAG+GGG | - | 15225:46971-46990 | None:intergenic | 30.0% | |
| TGAGTTTCTTCTTAAGTTCA+AGG | + | 15225:48555-48574 | MS.gene36278:intron | 30.0% | |
| TTAAATCAGAGGAAACTTCT+AGG | + | 15225:49547-49566 | MS.gene36278:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | + | 15225:48188-48207 | MS.gene36278:CDS | 30.0% | |
| TTTACCATAGATTTCTTTGC+TGG | - | 15225:47036-47055 | None:intergenic | 30.0% | |
| TTTACCTTGCCCATAAAAAT+GGG | + | 15225:48138-48157 | MS.gene36278:CDS | 30.0% | |
| TTTCTGCAAAACTATCATGT+TGG | - | 15225:47533-47552 | None:intergenic | 30.0% | |
| ! | AAAGTATGAGAATTTAGCTC+TGG | + | 15225:47423-47442 | MS.gene36278:intron | 30.0% |
| ! | ACAACCACGATTTAAAACTA+TGG | - | 15225:46617-46636 | None:intergenic | 30.0% |
| ! | ACCCTTCTCAAATTCTAAAA+TGG | + | 15225:48742-48761 | MS.gene36278:intron | 30.0% |
| ! | ATCTAAAACTGTGAAACCAA+AGG | + | 15225:49455-49474 | MS.gene36278:CDS | 30.0% |
| ! | CCTCTCTTTCTAAAAAACTT+TGG | - | 15225:49879-49898 | None:intergenic | 30.0% |
| ! | GGTAGTTTGCATAAATCTAT+AGG | - | 15225:46871-46890 | None:intergenic | 30.0% |
| ! | TGATGCAGTAGTTTTTGAAT+TGG | + | 15225:48211-48230 | MS.gene36278:CDS | 30.0% |
| ! | TGCAATTTCTGTCAATGTTT+TGG | - | 15225:47010-47029 | None:intergenic | 30.0% |
| ! | TGTATCTGAGAAGATTCTTT+TGG | + | 15225:49713-49732 | MS.gene36278:CDS | 30.0% |
| ! | TGTTTATATTTGAGACCCAA+TGG | + | 15225:49104-49123 | MS.gene36278:intron | 30.0% |
| ! | TTTTCCAATGTGCTAACTTT+TGG | + | 15225:48919-48938 | MS.gene36278:intron | 30.0% |
| !! | AACAAAAGCATTTATATGCC+AGG | + | 15225:49248-49267 | MS.gene36278:intron | 30.0% |
| !! | AGCATTGACTTGATAAATGA+TGG | - | 15225:47853-47872 | None:intergenic | 30.0% |
| !! | CTCATGTTTATAGCTGTTTT+TGG | + | 15225:47878-47897 | MS.gene36278:CDS | 30.0% |
| !! | CTTTGAAGTTATAAGAGAGT+TGG | - | 15225:48281-48300 | None:intergenic | 30.0% |
| !! | TAGATTTGATAATGAGGTTG+CGG | + | 15225:46779-46798 | MS.gene36278:intron | 30.0% |
| !!! | CCAAAGTTTTTTAGAAAGAG+AGG | + | 15225:49876-49895 | MS.gene36278:CDS | 30.0% |
| !!! | TAAGCCATAGTTTTAAATCG+TGG | + | 15225:46610-46629 | MS.gene36278:intron | 30.0% |
| !!! | TGTTTATAGCTGTTTTTGGT+TGG | + | 15225:47882-47901 | MS.gene36278:CDS | 30.0% |
| AACAAGAAAAGGAAGGCAAA+AGG | + | 15225:49687-49706 | MS.gene36278:CDS | 35.0% | |
| AACAGCTATAAACATGAGAC+CGG | - | 15225:47876-47895 | None:intergenic | 35.0% | |
| AACTATGGCTTAAACCAACA+CGG | - | 15225:46602-46621 | None:intergenic | 35.0% | |
| AACTCCAAAAGTTAGCACAT+TGG | - | 15225:48926-48945 | None:intergenic | 35.0% | |
| AAGTCCAGCAAAGAAATCTA+TGG | + | 15225:47029-47048 | MS.gene36278:CDS | 35.0% | |
| ACCTGCAATAATGTATTGTC+AGG | - | 15225:49330-49349 | None:intergenic | 35.0% | |
| AGATTTATGCAAACTACCTG+TGG | + | 15225:46873-46892 | MS.gene36278:intron | 35.0% | |
| AGCTAAGTGAAACCAAATGT+TGG | - | 15225:47096-47115 | None:intergenic | 35.0% | |
| ATGTTCCTCACAAAATCTAC+TGG | - | 15225:48057-48076 | None:intergenic | 35.0% | |
| CAAAGTTGCCAAACAAGAAA+AGG | + | 15225:49676-49695 | MS.gene36278:CDS | 35.0% | |
| CAACAAGGTTAACAATGTGT+AGG | - | 15225:47938-47957 | None:intergenic | 35.0% | |
| CAACTATGTTGGCAATATCA+AGG | - | 15225:46648-46667 | None:intergenic | 35.0% | |
| CAAGACATAGTTGTCAAATG+TGG | - | 15225:46430-46449 | None:intergenic | 35.0% | |
| CAAGTTAGTACCATTACAAG+TGG | - | 15225:48802-48821 | None:intergenic | 35.0% | |
| CATTTATCAAGTCAATGCTC+CGG | + | 15225:47854-47873 | MS.gene36278:CDS | 35.0% | |
| CATTTGACAACTATGTCTTG+CGG | + | 15225:46430-46449 | MS.gene36278:intron | 35.0% | |
| CCTAAATCCTTGAGAACAAA+AGG | - | 15225:46973-46992 | None:intergenic | 35.0% | |
| CTCTGTAAAGAACCAACATT+TGG | + | 15225:47081-47100 | MS.gene36278:intron | 35.0% | |
| CTTGGTGAAAATGTTGTTGA+TGG | + | 15225:48358-48377 | MS.gene36278:intron | 35.0% | |
| GGAAGAGGAATACTTTCAAA+TGG | + | 15225:48468-48487 | MS.gene36278:intron | 35.0% | |
| GGACATATCACTAGTAAATG+TGG | - | 15225:48869-48888 | None:intergenic | 35.0% | |
| GGCACTAACTACTTAGAATT+TGG | - | 15225:48977-48996 | None:intergenic | 35.0% | |
| GTCTATCACGATAGATTGAT+CGG | - | 15225:48318-48337 | None:intergenic | 35.0% | |
| GTGTCCTAACAGAATTCATA+TGG | + | 15225:49290-49309 | MS.gene36278:intron | 35.0% | |
| GTTTACCTTGCCCATAAAAA+TGG | + | 15225:48137-48156 | MS.gene36278:CDS | 35.0% | |
| TAAGAGAGTTGGATGAGAAT+CGG | - | 15225:48270-48289 | None:intergenic | 35.0% | |
| TACCAGTAACAAGTATGAAG+CGG | + | 15225:46164-46183 | MS.gene36278:CDS | 35.0% | |
| TAGAATCCAACTAGGAATTG+TGG | - | 15225:46805-46824 | None:intergenic | 35.0% | |
| TCAACATCAACATCCTCAAT+AGG | - | 15225:49786-49805 | None:intergenic | 35.0% | |
| TCAAGAAAGAAAACGTGCTT+GGG | + | 15225:47786-47805 | MS.gene36278:CDS | 35.0% | |
| TCCTGACAATACATTATTGC+AGG | + | 15225:49326-49345 | MS.gene36278:intron | 35.0% | |
| TCGAAGACTGCAAATTGATT+TGG | - | 15225:47828-47847 | None:intergenic | 35.0% | |
| TCTATCACGATAGATTGATC+GGG | - | 15225:48317-48336 | None:intergenic | 35.0% | |
| TGTTCCTCACAAAATCTACT+GGG | - | 15225:48056-48075 | None:intergenic | 35.0% | |
| ! | AATATCCCCTTTTGTTCTCA+AGG | + | 15225:46963-46982 | MS.gene36278:intron | 35.0% |
| ! | ATAACCCGCAACAACATTTT+AGG | - | 15225:46488-46507 | None:intergenic | 35.0% |
| ! | CCTTTTGTTCTCAAGGATTT+AGG | + | 15225:46970-46989 | MS.gene36278:intron | 35.0% |
| ! | GGTTGATGTAGATTCAATTG+CGG | - | 15225:46409-46428 | None:intergenic | 35.0% |
| ! | GTCTGAAACTGTTAAATCAG+AGG | + | 15225:49536-49555 | MS.gene36278:CDS | 35.0% |
| ! | TTCATACTTGTTACTGGTAG+TGG | - | 15225:46163-46182 | None:intergenic | 35.0% |
| ! | TTTGCCTTCCTTTTCTTGTT+TGG | - | 15225:49687-49706 | None:intergenic | 35.0% |
| !! | AAAAGCATTTATATGCCAGG+TGG | + | 15225:49251-49270 | MS.gene36278:intron | 35.0% |
| !! | ACCACTAAGCCCATTTTTAT+GGG | - | 15225:48150-48169 | None:intergenic | 35.0% |
| !!! | AATTTAGCTCTGGATTTTGC+AGG | + | 15225:47433-47452 | MS.gene36278:intron | 35.0% |
| !!! | TATAGCTGTTTTTGGTTGGT+AGG | + | 15225:47886-47905 | MS.gene36278:intron | 35.0% |
| !!! | TCTCATGTGCTAGTTTTTGT+GGG | + | 15225:48710-48729 | MS.gene36278:intron | 35.0% |
| AAAAGCAGCACATACTCCAT+TGG | - | 15225:49123-49142 | None:intergenic | 40.0% | |
| AAACAAAAAACAAGTGGGCC+TGG | - | 15225:49175-49194 | None:intergenic | 40.0% | |
| AAACTAGCACATGAGACAAG+AGG | - | 15225:48706-48725 | None:intergenic | 40.0% | |
| AAAGCAGCACATACTCCATT+GGG | - | 15225:49122-49141 | None:intergenic | 40.0% | |
| ACGATTCTGCACAGAGAAAT+AGG | - | 15225:47122-47141 | None:intergenic | 40.0% | |
| AGAAGAAATCGATGCTTTGG+TGG | + | 15225:49395-49414 | MS.gene36278:CDS | 40.0% | |
| ATACGAAGGAACTGTGTTTC+TGG | - | 15225:47203-47222 | None:intergenic | 40.0% | |
| ATATCATCATTCGTTCCACC+TGG | - | 15225:49269-49288 | None:intergenic | 40.0% | |
| CATCAAAAACCTAGATGGTG+TGG | + | 15225:46462-46481 | MS.gene36278:intron | 40.0% | |
| CGATTCTGCACAGAGAAATA+GGG | - | 15225:47121-47140 | None:intergenic | 40.0% | |
| CTCAAGAAAGAAAACGTGCT+TGG | + | 15225:47785-47804 | MS.gene36278:CDS | 40.0% | |
| GAAGAAGGAAGAACCTATTG+AGG | + | 15225:49770-49789 | MS.gene36278:CDS | 40.0% | |
| GACTTGAGGAAAACAAGAAG+AGG | + | 15225:46199-46218 | MS.gene36278:CDS | 40.0% | |
| GGAAAACAAGAAGAGGTTTG+AGG | + | 15225:46206-46225 | MS.gene36278:CDS | 40.0% | |
| GGTTGAAGCAGCAAGATTTA+AGG | + | 15225:48232-48251 | MS.gene36278:CDS | 40.0% | |
| GTCAAGGTCAAGTTCATCAT+GGG | + | 15225:47627-47646 | MS.gene36278:CDS | 40.0% | |
| GTTAGTACCATTACAAGTGG+TGG | - | 15225:48799-48818 | None:intergenic | 40.0% | |
| GTTGCCAAACAAGAAAAGGA+AGG | + | 15225:49680-49699 | MS.gene36278:CDS | 40.0% | |
| TACTGCAATTGAGCCAAAAG+AGG | + | 15225:49617-49636 | MS.gene36278:CDS | 40.0% | |
| TCAAGGTCAAGTTCATCATG+GGG | + | 15225:47628-47647 | MS.gene36278:CDS | 40.0% | |
| TGTCTTGTCTTGAGTGTGAA+AGG | + | 15225:48840-48859 | MS.gene36278:intron | 40.0% | |
| TGTGGCCTAAAATGTTGTTG+CGG | + | 15225:46480-46499 | MS.gene36278:intron | 40.0% | |
| ! | CAACAACATTTTCACCAAGC+TGG | - | 15225:48357-48376 | None:intergenic | 40.0% |
| ! | CATAAAAATGGGCTTAGTGG+TGG | + | 15225:48149-48168 | MS.gene36278:CDS | 40.0% |
| ! | GAAGACTGACTTAGAGAAGA+AGG | + | 15225:49755-49774 | MS.gene36278:CDS | 40.0% |
| ! | GCTACTTTGATTTCATCCAG+TGG | - | 15225:47760-47779 | None:intergenic | 40.0% |
| ! | TCTTCCCAGTAGATTTTGTG+AGG | + | 15225:48049-48068 | MS.gene36278:CDS | 40.0% |
| !! | AGTTTCTAGTCTTGAGGAAG+AGG | + | 15225:48453-48472 | MS.gene36278:intron | 40.0% |
| !! | CACCACTAAGCCCATTTTTA+TGG | - | 15225:48151-48170 | None:intergenic | 40.0% |
| !! | CTAATCTTGTTCTGGAACCT+AGG | + | 15225:47164-47183 | MS.gene36278:CDS | 40.0% |
| !! | GCAATGTTCTCTAAAACTGC+AGG | + | 15225:49149-49168 | MS.gene36278:intron | 40.0% |
| !! | TAAGCCCATTTTTATGGGCA+AGG | - | 15225:48145-48164 | None:intergenic | 40.0% |
| !!! | GTCTCATGTGCTAGTTTTTG+TGG | + | 15225:48709-48728 | MS.gene36278:intron | 40.0% |
| !!! | GTTTTCTTTGGAGCTTCCTT+TGG | - | 15225:49474-49493 | None:intergenic | 40.0% |
| AACCTGCTGCAGAAAAACCT+CGG | + | 15225:49841-49860 | MS.gene36278:CDS | 45.0% | |
| AAGAAAACGTGCTTGGGATG+CGG | + | 15225:47792-47811 | MS.gene36278:CDS | 45.0% | |
| AGACACTAAGGCTATGCTAG+TGG | - | 15225:46905-46924 | None:intergenic | 45.0% | |
| AGCACATGAGACAAGAGGTA+AGG | - | 15225:48701-48720 | None:intergenic | 45.0% | |
| AGTTCCTTCGTATGCTGAAG+AGG | + | 15225:47210-47229 | MS.gene36278:CDS | 45.0% | |
| ATCGATGCTTTGGTGGAAGA+AGG | + | 15225:49402-49421 | MS.gene36278:CDS | 45.0% | |
| CACACTCAAGACAAGACATC+TGG | - | 15225:48838-48857 | None:intergenic | 45.0% | |
| CTTACCTCTTCAGCATACGA+AGG | - | 15225:47217-47236 | None:intergenic | 45.0% | |
| GCCAACATAGTTGTCAACTG+TGG | + | 15225:46655-46674 | MS.gene36278:intron | 45.0% | |
| GCCACAGTTGACAACTATGT+TGG | - | 15225:46659-46678 | None:intergenic | 45.0% | |
| GGCTAGAGAACAAAGACTTG+AGG | + | 15225:46185-46204 | MS.gene36278:CDS | 45.0% | |
| GGTCAAGGTCAAGTTCATCA+TGG | + | 15225:47626-47645 | MS.gene36278:CDS | 45.0% | |
| GGTCATGTCTCTAACTGATG+TGG | - | 15225:48649-48668 | None:intergenic | 45.0% | |
| GTGGCCTAAAATGTTGTTGC+GGG | + | 15225:46481-46500 | MS.gene36278:intron | 45.0% | |
| TAAGGCTATGCTAGTGGCAA+GGG | - | 15225:46899-46918 | None:intergenic | 45.0% | |
| TCGTATGCTGAAGAGGTAAG+CGG | + | 15225:47217-47236 | MS.gene36278:intron | 45.0% | |
| ! | ACAAGACATCTGGAGCATGA+AGG | - | 15225:48828-48847 | None:intergenic | 45.0% |
| ! | AGCCGCTTCATACTTGTTAC+TGG | - | 15225:46169-46188 | None:intergenic | 45.0% |
| ! | CATTTTAGGCCACACCATCT+AGG | - | 15225:46474-46493 | None:intergenic | 45.0% |
| ! | GCCCATAAAAATGGGCTTAG+TGG | + | 15225:48146-48165 | MS.gene36278:CDS | 45.0% |
| ! | TCAGACTTTGGCTCAAGTGT+AGG | - | 15225:49522-49541 | None:intergenic | 45.0% |
| !! | TTTGGAGCTCGAATTTTCCG+AGG | - | 15225:49861-49880 | None:intergenic | 45.0% |
| !!! | GTGCTAGTTTTTGTGGGTTC+AGG | + | 15225:48716-48735 | MS.gene36278:intron | 45.0% |
| CAAGTTCATCATGGGGAAGG+TGG | + | 15225:47635-47654 | MS.gene36278:intron | 50.0% | |
| CCTCGAAACAGTGAAACCAG+AGG | + | 15225:49647-49666 | MS.gene36278:CDS | 50.0% | |
| CTAAGGCTATGCTAGTGGCA+AGG | - | 15225:46900-46919 | None:intergenic | 50.0% | |
| GGTCAAGTTCATCATGGGGA+AGG | + | 15225:47632-47651 | MS.gene36278:CDS | 50.0% | |
| GTTGTCAACTGTGGCTGTCA+TGG | + | 15225:46664-46683 | MS.gene36278:intron | 50.0% | |
| TGCTGAGCCACCACTTGTAA+TGG | + | 15225:48789-48808 | MS.gene36278:intron | 50.0% | |
| TGGCTGGAGAGGATTTGCAT+TGG | + | 15225:48169-48188 | MS.gene36278:CDS | 50.0% | |
| TTGCGGCCACAATTCCTAGT+TGG | + | 15225:46796-46815 | MS.gene36278:intron | 50.0% | |
| ! | AAAATGGGCTTAGTGGTGGC+TGG | + | 15225:48153-48172 | MS.gene36278:CDS | 50.0% |
| ! | CCTCTGGTTTCACTGTTTCG+AGG | - | 15225:49650-49669 | None:intergenic | 50.0% |
| ! | TCGAGGTGTGCATCCTCTTT+TGG | - | 15225:49633-49652 | None:intergenic | 50.0% |
| ! | TTCCGAGGTTTTTCTGCAGC+AGG | - | 15225:49846-49865 | None:intergenic | 50.0% |
| ! | TTTTGCAGGCCAGTGTTGTG+TGG | + | 15225:47447-47466 | MS.gene36278:intron | 50.0% |
| !! | GTTCTCTAAAACTGCAGGCC+AGG | + | 15225:49154-49173 | MS.gene36278:intron | 50.0% |
| ACCTCCTCTGCAACTGTGGA+AGG | - | 15225:47603-47622 | None:intergenic | 55.0% | |
| ACCTTCCACAGTTGCAGAGG+AGG | + | 15225:47599-47618 | MS.gene36278:CDS | 55.0% | |
| CACAGTTGCAGAGGAGGTCA+AGG | + | 15225:47605-47624 | MS.gene36278:CDS | 55.0% | |
| CAGACCTTCCACAGTTGCAG+AGG | + | 15225:47596-47615 | MS.gene36278:CDS | 55.0% | |
| CTTGACCTCCTCTGCAACTG+TGG | - | 15225:47607-47626 | None:intergenic | 55.0% | |
| GGCAACTTTGTAGCTGCCTC+TGG | - | 15225:49666-49685 | None:intergenic | 55.0% | |
| TCAGTTACGCATACGCTGCG+AGG | + | 15225:47734-47753 | MS.gene36278:intron | 55.0% | |
| TGCAGAGGAGGTCAAGGTCA+AGG | + | 15225:47611-47630 | MS.gene36278:CDS | 55.0% | |
| ATGCTAGTGGCAAGGGCCAC+AGG | - | 15225:46892-46911 | None:intergenic | 60.0% | |
| ACGTGCTTGGGATGCGGCAG+AGG | + | 15225:47798-47817 | MS.gene36278:CDS | 65.0% | |
| GGGCTTAGTGGTGGCTGGAG+AGG | + | 15225:48158-48177 | MS.gene36278:CDS | 65.0% | |
| !! | CTGGCACGAGAAGAGCGCCT+AGG | - | 15225:47184-47203 | None:intergenic | 65.0% |
| CGCATACGCTGCGAGGCCAC+TGG | + | 15225:47741-47760 | MS.gene36278:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15225 | gene | 46144 | 49902 | 46144 | ID=MS.gene36278 |
| 15225 | mRNA | 46144 | 49902 | 46144 | ID=MS.gene36278.t1;Parent=MS.gene36278 |
| 15225 | exon | 46144 | 46227 | 46144 | ID=MS.gene36278.t1.exon1;Parent=MS.gene36278.t1 |
| 15225 | CDS | 46144 | 46227 | 46144 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| 15225 | exon | 46985 | 47050 | 46985 | ID=MS.gene36278.t1.exon2;Parent=MS.gene36278.t1 |
| 15225 | CDS | 46985 | 47050 | 46985 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| 15225 | exon | 47136 | 47231 | 47136 | ID=MS.gene36278.t1.exon3;Parent=MS.gene36278.t1 |
| 15225 | CDS | 47136 | 47231 | 47136 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| 15225 | exon | 47589 | 47653 | 47589 | ID=MS.gene36278.t1.exon4;Parent=MS.gene36278.t1 |
| 15225 | CDS | 47589 | 47653 | 47589 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| 15225 | exon | 47738 | 47903 | 47738 | ID=MS.gene36278.t1.exon5;Parent=MS.gene36278.t1 |
| 15225 | CDS | 47738 | 47903 | 47738 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| 15225 | exon | 48047 | 48253 | 48047 | ID=MS.gene36278.t1.exon6;Parent=MS.gene36278.t1 |
| 15225 | CDS | 48047 | 48253 | 48047 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| 15225 | exon | 49348 | 49902 | 49348 | ID=MS.gene36278.t1.exon7;Parent=MS.gene36278.t1 |
| 15225 | CDS | 49348 | 49902 | 49348 | ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1 |
| Gene Sequence |
| Protein sequence |
