AlfalfaGEDB | MS.gene36278

M. sativa cultivar XinJiangDaYe / MS.gene36278

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36278.t1	XP_003597798.2	87.9	413	46	3	1	412	1	410	3.40E-176	627.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36278.t1	Q5KQI4	43.4	281	146	6	4	282	6	275	8.0e-49	196.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36278.t1	G7IMD4	87.9	413	46	3	1	412	1	410	2.5e-176	627.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene36278.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36278.t1	MTR_2g102450	91.041	413	33	3	1	412	1	410	0.0	716
MS.gene36278.t1	MTR_2g102450	79.177	413	28	5	1	412	1	356	0.0	591
MS.gene36278.t1	MTR_4g008310	78.531	177	38	0	55	231	128	304	2.58e-86	266
MS.gene36278.t1	MTR_3g101520	41.921	229	127	2	9	237	5	227	3.08e-48	164
MS.gene36278.t1	MTR_3g101520	42.358	229	118	4	9	237	5	219	7.19e-48	163
MS.gene36278.t1	MTR_4g101970	32.692	260	101	7	184	392	51	287	1.23e-20	93.2
MS.gene36278.t1	MTR_1g035460	38.384	99	56	3	137	233	192	287	1.45e-11	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36278.t1	AT5G58280	47.036	253	102	4	12	237	5	252	1.68e-65	211
MS.gene36278.t1	AT5G58280	46.032	252	107	3	12	237	5	253	8.19e-65	210
MS.gene36278.t1	AT5G58280	46.121	232	109	4	12	240	5	223	4.91e-59	194
MS.gene36278.t1	AT3G19184	42.683	246	127	4	12	255	8	241	2.45e-47	163
MS.gene36278.t1	AT3G19184	42.683	246	127	4	12	255	8	241	3.22e-47	163
MS.gene36278.t1	AT5G42700	41.228	228	117	4	10	234	7	220	6.31e-44	153
MS.gene36278.t1	AT5G42700	53.333	120	55	1	116	234	56	175	1.70e-36	132

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Find 0 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAACCACACAACAC+TGG	-	15225:47459-47478	None:intergenic	30.0%
AAAAGAAGAAATCGATGCTT+TGG	+	15225:49392-49411	MS.gene36278:CDS	30.0%
AAAATTCAAGATTTCCGTGT+TGG	+	15225:46585-46604	MS.gene36278:intron	30.0%
AAATGTTAGTGACATGGTTA+TGG	+	15225:47706-47725	MS.gene36278:intron	30.0%
AAGAATCAAGGAATTCTCAA+AGG	-	15225:47485-47504	None:intergenic	30.0%
AATGTTAGTGACATGGTTAT+GGG	+	15225:47707-47726	MS.gene36278:intron	30.0%
ACAAACTTATCATCTGTCTT+TGG	-	15225:48083-48102	None:intergenic	30.0%
ACATAAAAAACTTGATGCTG+TGG	+	15225:46699-46718	MS.gene36278:intron	30.0%
ACATTGAAGAATGAACAACA+AGG	-	15225:47953-47972	None:intergenic	30.0%
ACTTCCATATGAATTCTGTT+AGG	-	15225:49297-49316	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
15225	gene	46144	49902	46144	ID=MS.gene36278
15225	mRNA	46144	49902	46144	ID=MS.gene36278.t1;Parent=MS.gene36278
15225	exon	46144	46227	46144	ID=MS.gene36278.t1.exon1;Parent=MS.gene36278.t1
15225	CDS	46144	46227	46144	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1
15225	exon	46985	47050	46985	ID=MS.gene36278.t1.exon2;Parent=MS.gene36278.t1
15225	CDS	46985	47050	46985	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1
15225	exon	47136	47231	47136	ID=MS.gene36278.t1.exon3;Parent=MS.gene36278.t1
15225	CDS	47136	47231	47136	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1
15225	exon	47589	47653	47589	ID=MS.gene36278.t1.exon4;Parent=MS.gene36278.t1
15225	CDS	47589	47653	47589	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1
15225	exon	47738	47903	47738	ID=MS.gene36278.t1.exon5;Parent=MS.gene36278.t1
15225	CDS	47738	47903	47738	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1
15225	exon	48047	48253	48047	ID=MS.gene36278.t1.exon6;Parent=MS.gene36278.t1
15225	CDS	48047	48253	48047	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1
15225	exon	49348	49902	49348	ID=MS.gene36278.t1.exon7;Parent=MS.gene36278.t1
15225	CDS	49348	49902	49348	ID=cds.MS.gene36278.t1;Parent=MS.gene36278.t1

Gene Sequence

>MS.gene36278

ATGGCAAAGGGTTGTTCCACTACCAGTAACAAGTATGAAGCGGCTAGAGAACAAAGACTTGAGGAAAACAAGAAGAGGTTTGAGGTAATTACCACTTTGTTTGAGATAATCTTAATCAGTAATTATCATTTGTAAAATGCTTAGGACTTTCATGTTGAATGAAATCAAGGTTTTAAAATAGTGGTTGTGTTGTGATCTTTGATATTAAAGAAATAGTTTTCAAAAAACTTGACAACTATCAAGGTTTTCGATGTTTCTACAACCGCAATTGAATCTACATCAACCACATTTGACAACTATGTCTTGCGGTTGTAGAAACATCAAAAACCTAGATGGTGTGGCCTAAAATGTTGTTGCGGGTTATTTTTAAAACCCGATTGAGTAGTATATATCAAAAAACTTGATCCCTTAAAGTTTTTGACTAGTATACATGCTTGTTTAAAAATTCAAGATTTCCGTGTTGGTTTAAGCCATAGTTTTAAATCGTGGTTGTGTTGTGATCCTTGATATTGCCAACATAGTTGTCAACTGTGGCTGTCATGGTCAGTCACAGAAACATAAAAAACTTGATGCTGTGGCCTATATTGAGTAGTGTAAATGTCTCTGTAAAATATTCAAGAGTTTCATGTTGGTAATAGATTTGATAATGAGGTTGCGGCCACAATTCCTAGTTGGATTCTATTACAATTCGATGTTGATAATAGTTGTGATAATGAGGTTTGAACCTATAGATTTATGCAAACTACCTGTGGCCCTTGCCACTAGCATAGCCTTAGTGTCTTATATTTTGTTCTCTTTTGATGATTGCTTATTTTACATAATATCCCCTTTTGTTCTCAAGGATTTAGGAATTTCAAAAATTTCCAAAACATTGACAGAAATTGCAAGTCCAGCAAAGAAATCTATGGTAAACTTGCAATTTTTTTATTTGGTTTTACTCTGTAAAGAACCAACATTTGGTTTCACTTAGCTTTCCCTATTTCTCTGTGCAGAATCGTCGTTTCAGACCAAAATCAATGACTAATCTTGTTCTGGAACCTAGGCGCTCTTCTCGTGCCAGAAACACAGTTCCTTCGTATGCTGAAGAGGTAAGCGGTGTTGCCTTGCAAAGTTCAAACTATCATTATGCAATGAATTAAACATAAAGTGTGACTCTGACTCAAGAAAGAAGATTGAATCACCTTTGTATAATGGAATATCTAAAGCTAGTATGAATGGATATAGTAGAAAAATATAAATACTAGGAATATGTGGTTGAATTTTTTTGTTCCCTAAGACAAAAGTATGAGAATTTAGCTCTGGATTTTGCAGGCCAGTGTTGTGTGGTTTTTTTTTTTCCCTTTGAGAATTCCTTGATTCTTGAATTCAAATATTCAGCATTCTTTTCCAACATGATAGTTTTGCAGAAATATCTATTTGACAGTATATATTTCACTTTATTACAGTTTGGCACAGACCTTCCACAGTTGCAGAGGAGGTCAAGGTCAAGGTCAAGTTCATCATGGGGAAGGTGGTTAAATAACTAGTTACTCATGACTTGTCTTTATTGCTAATTGAAATTGAAATGTTAGTGACATGGTTATGGGAATCTCAGTTACGCATACGCTGCGAGGCCACTGGATGAAATCAAAGTAGCTACAGCTCAAGAAAGAAAACGTGCTTGGGATGCGGCAGAGGCACTCCAAATCAATTTGCAGTCTTCGAATCCATCATTTATCAAGTCAATGCTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGGTAGGTTTCAGCTCTTACATCTTATATATTGCCTACACATTGTTAACCTTGTTGTTCATTCTTCAATGTTAACATTATTATTTATAATCAATTAATTTAACATATGATGTACTTCTTAATATATATTATCTTTATGTTGTCAGGGTCTTCCCAGTAGATTTTGTGAGGAACATCTTCCAAAGACAGATGATAAGTTTGTTTTAGAGGATGAAAAAGGCGCAGAATATGATGCTGTTTACCTTGCCCATAAAAATGGGCTTAGTGGTGGCTGGAGAGGATTTGCATTGGAACATAAATTGGATGATGGTGATGCAGTAGTTTTTGAATTGGTTGAAGCAGCAAGATTTAAGGTACTTTATGTTGCCGATTCTCATCCAACTCTCTTATAACTTCAAAGGTTGTTATAATTTCCCGATCAATCTATCGTGATAGACAGAATAATAACTAAAACCAGCTTGGTGAAAATGTTGTTGATGGTCAAAATAATTAACTTATTTTGGTAGTTGTCCATGATTTGTTTTTGACAAAACTAAACTGTGGATAAATTTAAGTTTCTAGTCTTGAGGAAGAGGAATACTTTCAAATGGACTGCCACTAATGAACTTTGATATTCAGAAGTCTGAAATTATTTATAACACTCACCTTTGATATTGAGTTTCTTCTTAAGTTCAAGGTTTTTCCTTTTTGTAATATTTTAAAATCTTCAAATTTAAAAGGTTTTATAAATATATTTATTGAGCTTCCACATCAGTTAGAGACATGACCAAATTAATTCTTACAAGGCTTAAGCAATTCCTTACCTCTTGTCTCATGTGCTAGTTTTTGTGGGTTCAGGTAGACCCTTCTCAAATTCTAAAATGGTATTAGAGTTTAAGTCATAAGTGTTGCTGAGCCACCACTTGTAATGGTACTAACTTGCAGCCTTCATGCTCCAGATGTCTTGTCTTGAGTGTGAAAGGATCCCACATTTACTAGTGATATGTCCAAAATAGTTGTTATAACTAGGAAATAGTGTTTTTCCAATGTGCTAACTTTTGGAGTTTACTTTTAGGGTTAAAATTACGGTCAAGCCAAATTCTAAGTAGTTAGTGCCAATATAAATTTATTTGTTCTATAAGAAAGGTTTATTGAAAAATATAAATTTATTGAAGGTTAATTTAGGTGCAATAGTATTCAATATGAAAGTAGTTAACATTTTGTTGTTTATATTTGAGACCCAATGGAGTATGTGCTGCTTTTTTGTATGCAATGTTCTCTAAAACTGCAGGCCAGGCCCACTTGTTTTTTGTTTGCAAATGTTCTCTGTAATGAAATGACACATATAATCTATATGCTTGCTTTAGAAACAAAAGCATTTATATGCCAGGTGGAACGAATGATGATATCGTGTCCTAACAGAATTCATATGGAAGTAAATAATAATCCTGACAATACATTATTGCAGGTTTATATTGTTAGAGCATTTGAAAATATAGGTGTAGAGGAAGAAAAAGAAGAAATCGATGCTTTGGTGGAAGAAGGAAATATGCAAACATCCAAAGCAATCAAAAAATCTAAAACTGTGAAACCAAAGGAAGCTCCAAAGAAAACTAGAATGCAAAAGGTATCTAAAGTACCTACACTTGAGCCAAAGTCTGAAACTGTTAAATCAGAGGAAACTTCTAGGAAAACAAGATCTTCTCAGAACAAAAAGCAAAAGATATCTGATGTATCTACTGCAATTGAGCCAAAAGAGGATGCACACCTCGAAACAGTGAAACCAGAGGCAGCTACAAAGTTGCCAAACAAGAAAAGGAAGGCAAAAGGTGATGTATCTGAGAAGATTCTTTTGGAAGATAATGCTAAAGCAATGAAGACTGACTTAGAGAAGAAGGAAGAACCTATTGAGGATGTTGATGTTGAGCTAAAGAAAGTTAAGCTAGATGATAAAGCAAGCAAACCTGCTGCAGAAAAACCTCGGAAAATTCGAGCTCCAAAGTTTTTTAGAAAGAGAGGTTAG

Protein sequence

>MS.gene36278.t1

MAKGCSTTSNKYEAAREQRLEENKKRFEDLGISKISKTLTEIASPAKKSMNRRFRPKSMTNLVLEPRRSSRARNTVPSYAEEFGTDLPQLQRRSRSRSSSSWGSYAYAARPLDEIKVATAQERKRAWDAAEALQINLQSSNPSFIKSMLRSHVYSCFWLGLPSRFCEEHLPKTDDKFVLEDEKGAEYDAVYLAHKNGLSGGWRGFALEHKLDDGDAVVFELVEAARFKVYIVRAFENIGVEEEKEEIDALVEEGNMQTSKAIKKSKTVKPKEAPKKTRMQKVSKVPTLEPKSETVKSEETSRKTRSSQNKKQKISDVSTAIEPKEDAHLETVKPEAATKLPNKKRKAKGDVSEKILLEDNAKAMKTDLEKKEEPIEDVDVELKKVKLDDKASKPAAEKPRKIRAPKFFRKRG