Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36279.t1 | XP_003597798.2 | 87.9 | 413 | 46 | 3 | 1 | 412 | 1 | 410 | 3.40E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36279.t1 | Q5KQI4 | 43.4 | 281 | 146 | 6 | 4 | 282 | 6 | 275 | 8.0e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36279.t1 | G7IMD4 | 87.9 | 413 | 46 | 3 | 1 | 412 | 1 | 410 | 2.5e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene36279.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36279.t1 | MTR_2g102450 | 91.041 | 413 | 33 | 3 | 1 | 412 | 1 | 410 | 0.0 | 716 |
| MS.gene36279.t1 | MTR_2g102450 | 79.177 | 413 | 28 | 5 | 1 | 412 | 1 | 356 | 0.0 | 591 |
| MS.gene36279.t1 | MTR_4g008310 | 78.531 | 177 | 38 | 0 | 55 | 231 | 128 | 304 | 2.58e-86 | 266 |
| MS.gene36279.t1 | MTR_3g101520 | 41.921 | 229 | 127 | 2 | 9 | 237 | 5 | 227 | 3.08e-48 | 164 |
| MS.gene36279.t1 | MTR_3g101520 | 42.358 | 229 | 118 | 4 | 9 | 237 | 5 | 219 | 7.19e-48 | 163 |
| MS.gene36279.t1 | MTR_4g101970 | 32.692 | 260 | 101 | 7 | 184 | 392 | 51 | 287 | 1.23e-20 | 93.2 |
| MS.gene36279.t1 | MTR_1g035460 | 38.384 | 99 | 56 | 3 | 137 | 233 | 192 | 287 | 1.45e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36279.t1 | AT5G58280 | 47.036 | 253 | 102 | 4 | 12 | 237 | 5 | 252 | 1.68e-65 | 211 |
| MS.gene36279.t1 | AT5G58280 | 46.032 | 252 | 107 | 3 | 12 | 237 | 5 | 253 | 8.19e-65 | 210 |
| MS.gene36279.t1 | AT5G58280 | 46.121 | 232 | 109 | 4 | 12 | 240 | 5 | 223 | 4.91e-59 | 194 |
| MS.gene36279.t1 | AT3G19184 | 42.683 | 246 | 127 | 4 | 12 | 255 | 8 | 241 | 2.45e-47 | 163 |
| MS.gene36279.t1 | AT3G19184 | 42.683 | 246 | 127 | 4 | 12 | 255 | 8 | 241 | 3.22e-47 | 163 |
| MS.gene36279.t1 | AT5G42700 | 41.228 | 228 | 117 | 4 | 10 | 234 | 7 | 220 | 6.31e-44 | 153 |
| MS.gene36279.t1 | AT5G42700 | 53.333 | 120 | 55 | 1 | 116 | 234 | 56 | 175 | 1.70e-36 | 132 |
Find 0 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATATAAATTTATTGA+AGG | + | 15227:5186-5205 | MS.gene36279:intron | 10.0% |
| !! | TAGAACAAATAAATTTATAT+TGG | - | 15227:5151-5170 | None:intergenic | 10.0% |
| !! | TTAAAATCTTCAAATTTAAA+AGG | + | 15227:4751-4770 | MS.gene36279:intron | 10.0% |
| !!! | GATTTTAAAATATTACAAAA+AGG | - | 15227:4739-4758 | None:intergenic | 10.0% |
| !!! | TCAAAATAATTAACTTATTT+TGG | + | 15227:4534-4553 | MS.gene36279:intron | 10.0% |
| !! | AATTTATTGAAGGTTAATTT+AGG | + | 15227:5196-5215 | MS.gene36279:intron | 15.0% |
| !! | AGTAGAAAAATATAAATACT+AGG | + | 15227:3519-3538 | MS.gene36279:intron | 15.0% |
| !! | ATTTATTTGTTCTATAAGAA+AGG | + | 15227:5157-5176 | MS.gene36279:intron | 15.0% |
| !!! | AAACTTGCAATTTTTTTATT+TGG | + | 15227:3206-3225 | MS.gene36279:intron | 15.0% |
| !! | ATACTAGTCAAAAACTTTAA+GGG | - | 15227:2705-2724 | None:intergenic | 20.0% |
| !! | ATATAAATACTAGGAATATG+TGG | + | 15227:3528-3547 | MS.gene36279:intron | 20.0% |
| !! | ATATTATCTTTATGTTGTCA+GGG | + | 15227:4179-4198 | MS.gene36279:intron | 20.0% |
| !! | ATATTTGAATTCAAGAATCA+AGG | - | 15227:3650-3669 | None:intergenic | 20.0% |
| !! | TATACTAGTCAAAAACTTTA+AGG | - | 15227:2706-2725 | None:intergenic | 20.0% |
| !! | TATATTATCTTTATGTTGTC+AGG | + | 15227:4178-4197 | MS.gene36279:intron | 20.0% |
| !! | TATTTCACTTTATTACAGTT+TGG | + | 15227:3724-3743 | MS.gene36279:intron | 20.0% |
| !! | TTAGATATTCCATTATACAA+AGG | - | 15227:3480-3499 | None:intergenic | 20.0% |
| !! | TTATCATTTGTAAAATGCTT+AGG | + | 15227:2419-2438 | MS.gene36279:intron | 20.0% |
| !! | TTTGATATATACTACTCAAT+CGG | - | 15227:2673-2692 | None:intergenic | 20.0% |
| !!! | AAATCAAGGTTTTAAAATAG+TGG | + | 15227:2458-2477 | MS.gene36279:intron | 20.0% |
| !!! | TACTTTTAGGGTTAAAATTA+CGG | + | 15227:5099-5118 | MS.gene36279:intron | 20.0% |
| !!! | TTTAGATTTTTTGATTGCTT+TGG | - | 15227:5595-5614 | None:intergenic | 20.0% |
| ! | AAAAAACTTGACAACTATCA+AGG | + | 15227:2518-2537 | MS.gene36279:intron | 25.0% |
| ! | AAAGAAAACTAGAATGCAAA+AGG | + | 15227:5638-5657 | MS.gene36279:CDS | 25.0% |
| ! | AAATTGAAATGTTAGTGACA+TGG | + | 15227:3853-3872 | MS.gene36279:intron | 25.0% |
| ! | AAGAAGAAACTCAATATCAA+AGG | - | 15227:4701-4720 | None:intergenic | 25.0% |
| ! | AATAATAACTAAAACCAGCT+TGG | + | 15227:4493-4512 | MS.gene36279:intron | 25.0% |
| ! | AATATTCAAGAGTTTCATGT+TGG | + | 15227:2906-2925 | MS.gene36279:intron | 25.0% |
| ! | AATTGTAATAGAATCCAACT+AGG | - | 15227:2966-2985 | None:intergenic | 25.0% |
| ! | ACATTTACACTACTCAATAT+AGG | - | 15227:2878-2897 | None:intergenic | 25.0% |
| ! | ATTGAATCACCTTTGTATAA+TGG | + | 15227:3468-3487 | MS.gene36279:intron | 25.0% |
| ! | ATTTGAAAATATAGGTGTAG+AGG | + | 15227:5518-5537 | MS.gene36279:CDS | 25.0% |
| ! | ATTTGCAAACAAAAAACAAG+TGG | - | 15227:5334-5353 | None:intergenic | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | + | 15227:4334-4353 | MS.gene36279:CDS | 25.0% |
| ! | CCAAAATAGTTGTTATAACT+AGG | + | 15227:5040-5059 | MS.gene36279:intron | 25.0% |
| ! | GAACAAAATATAAGACACTA+AGG | - | 15227:3070-3089 | None:intergenic | 25.0% |
| ! | TAAGATTATCTCAAACAAAG+TGG | - | 15227:2391-2410 | None:intergenic | 25.0% |
| ! | TGAATATCAAAGTTCATTAG+TGG | - | 15227:4651-4670 | None:intergenic | 25.0% |
| ! | TGACCAAATTAATTCTTACA+AGG | + | 15227:4817-4836 | MS.gene36279:intron | 25.0% |
| ! | TTGATATATACTACTCAATC+GGG | - | 15227:2672-2691 | None:intergenic | 25.0% |
| ! | TTTCATGTTGAATGAAATCA+AGG | + | 15227:2444-2463 | MS.gene36279:intron | 25.0% |
| ! | TTTGCAAACAAAAAACAAGT+GGG | - | 15227:5333-5352 | None:intergenic | 25.0% |
| !! | AAGCCTTGTAAGAATTAATT+TGG | - | 15227:4823-4842 | None:intergenic | 25.0% |
| !! | AATTCTCATACTTTTGTCTT+AGG | - | 15227:3570-3589 | None:intergenic | 25.0% |
| !! | ATATCTAAAGCTAGTATGAA+TGG | + | 15227:3492-3511 | MS.gene36279:intron | 25.0% |
| !! | ATTCTCATACTTTTGTCTTA+GGG | - | 15227:3569-3588 | None:intergenic | 25.0% |
| !! | CCTAGTTATAACAACTATTT+TGG | - | 15227:5043-5062 | None:intergenic | 25.0% |
| !! | GTTAGAGCATTTGAAAATAT+AGG | + | 15227:5510-5529 | MS.gene36279:CDS | 25.0% |
| !! | GTTTTGTCAAAAACAAATCA+TGG | - | 15227:4567-4586 | None:intergenic | 25.0% |
| !! | TGATAATAGTTGTGATAATG+AGG | + | 15227:2992-3011 | MS.gene36279:intron | 25.0% |
| !! | TTTTTGACAAAACTAAACTG+TGG | + | 15227:4574-4593 | MS.gene36279:intron | 25.0% |
| !!! | AACTTTTGGAGTTTACTTTT+AGG | + | 15227:5086-5105 | MS.gene36279:intron | 25.0% |
| !!! | AATTTAAGTTTCTAGTCTTG+AGG | + | 15227:4600-4619 | MS.gene36279:intron | 25.0% |
| !!! | ACAAGATTAGTCATTGATTT+TGG | - | 15227:3307-3326 | None:intergenic | 25.0% |
| !!! | ACCATTTTAGAATTTGAGAA+GGG | - | 15227:4899-4918 | None:intergenic | 25.0% |
| !!! | ACTTTTGGAGTTTACTTTTA+GGG | + | 15227:5087-5106 | MS.gene36279:intron | 25.0% |
| !!! | AGATGATAAGTTTGTTTTAG+AGG | + | 15227:4241-4260 | MS.gene36279:CDS | 25.0% |
| !!! | TACCATTTTAGAATTTGAGA+AGG | - | 15227:4900-4919 | None:intergenic | 25.0% |
| !!! | TGGTAATAGATTTGATAATG+AGG | + | 15227:2926-2945 | MS.gene36279:intron | 25.0% |
| !!! | TTTGTTTTAGAGGATGAAAA+AGG | + | 15227:4251-4270 | MS.gene36279:CDS | 25.0% |
| !!! | TTTTGCATTCTAGTTTTCTT+TGG | - | 15227:5639-5658 | None:intergenic | 25.0% |
| AAAAAAAAACCACACAACAC+TGG | - | 15227:3612-3631 | None:intergenic | 30.0% | |
| AAAAGAAGAAATCGATGCTT+TGG | + | 15227:5545-5564 | MS.gene36279:CDS | 30.0% | |
| AAAATTCAAGATTTCCGTGT+TGG | + | 15227:2738-2757 | MS.gene36279:intron | 30.0% | |
| AAATGTTAGTGACATGGTTA+TGG | + | 15227:3859-3878 | MS.gene36279:intron | 30.0% | |
| AAGAATCAAGGAATTCTCAA+AGG | - | 15227:3638-3657 | None:intergenic | 30.0% | |
| AATGTTAGTGACATGGTTAT+GGG | + | 15227:3860-3879 | MS.gene36279:intron | 30.0% | |
| ACAAACTTATCATCTGTCTT+TGG | - | 15227:4236-4255 | None:intergenic | 30.0% | |
| ACATAAAAAACTTGATGCTG+TGG | + | 15227:2852-2871 | MS.gene36279:intron | 30.0% | |
| ACATTGAAGAATGAACAACA+AGG | - | 15227:4106-4125 | None:intergenic | 30.0% | |
| ACTTCCATATGAATTCTGTT+AGG | - | 15227:5450-5469 | None:intergenic | 30.0% | |
| AGAAACATCAAAAACCTAGA+TGG | + | 15227:2610-2629 | MS.gene36279:intron | 30.0% | |
| AGAATCAAGGAATTCTCAAA+GGG | - | 15227:3637-3656 | None:intergenic | 30.0% | |
| ATCAATGACTAATCTTGTTC+TGG | + | 15227:3309-3328 | MS.gene36279:CDS | 30.0% | |
| ATGATAGTTTGAACTTTGCA+AGG | - | 15227:3401-3420 | None:intergenic | 30.0% | |
| CAACTCTCTTATAACTTCAA+AGG | + | 15227:4432-4451 | MS.gene36279:intron | 30.0% | |
| CTAAATCCTTGAGAACAAAA+GGG | - | 15227:3125-3144 | None:intergenic | 30.0% | |
| GACATATCACTAGTAAATGT+GGG | - | 15227:5021-5040 | None:intergenic | 30.0% | |
| GATTTAACAGTTTCAGACTT+TGG | - | 15227:5687-5706 | None:intergenic | 30.0% | |
| TAAATCCTTGAGAACAAAAG+GGG | - | 15227:3124-3143 | None:intergenic | 30.0% | |
| TGAGTTTCTTCTTAAGTTCA+AGG | + | 15227:4708-4727 | MS.gene36279:intron | 30.0% | |
| TTAAATCAGAGGAAACTTCT+AGG | + | 15227:5700-5719 | MS.gene36279:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | + | 15227:4341-4360 | MS.gene36279:CDS | 30.0% | |
| TTTACCATAGATTTCTTTGC+TGG | - | 15227:3189-3208 | None:intergenic | 30.0% | |
| TTTACCTTGCCCATAAAAAT+GGG | + | 15227:4291-4310 | MS.gene36279:CDS | 30.0% | |
| TTTCTGCAAAACTATCATGT+TGG | - | 15227:3686-3705 | None:intergenic | 30.0% | |
| ! | AAAGTATGAGAATTTAGCTC+TGG | + | 15227:3576-3595 | MS.gene36279:intron | 30.0% |
| ! | ACAACCACGATTTAAAACTA+TGG | - | 15227:2770-2789 | None:intergenic | 30.0% |
| ! | ACCCTTCTCAAATTCTAAAA+TGG | + | 15227:4895-4914 | MS.gene36279:intron | 30.0% |
| ! | ATCTAAAACTGTGAAACCAA+AGG | + | 15227:5608-5627 | MS.gene36279:CDS | 30.0% |
| ! | CCTCTCTTTCTAAAAAACTT+TGG | - | 15227:6032-6051 | None:intergenic | 30.0% |
| ! | GGTAGTTTGCATAAATCTAT+AGG | - | 15227:3024-3043 | None:intergenic | 30.0% |
| ! | TGATGCAGTAGTTTTTGAAT+TGG | + | 15227:4364-4383 | MS.gene36279:CDS | 30.0% |
| ! | TGCAATTTCTGTCAATGTTT+TGG | - | 15227:3163-3182 | None:intergenic | 30.0% |
| ! | TGTATCTGAGAAGATTCTTT+TGG | + | 15227:5866-5885 | MS.gene36279:CDS | 30.0% |
| ! | TGTTTATATTTGAGACCCAA+TGG | + | 15227:5257-5276 | MS.gene36279:intron | 30.0% |
| ! | TTTTCCAATGTGCTAACTTT+TGG | + | 15227:5072-5091 | MS.gene36279:intron | 30.0% |
| !! | AACAAAAGCATTTATATGCC+AGG | + | 15227:5401-5420 | MS.gene36279:intron | 30.0% |
| !! | AGCATTGACTTGATAAATGA+TGG | - | 15227:4006-4025 | None:intergenic | 30.0% |
| !! | CTCATGTTTATAGCTGTTTT+TGG | + | 15227:4031-4050 | MS.gene36279:CDS | 30.0% |
| !! | CTTTGAAGTTATAAGAGAGT+TGG | - | 15227:4434-4453 | None:intergenic | 30.0% |
| !! | TAGATTTGATAATGAGGTTG+CGG | + | 15227:2932-2951 | MS.gene36279:intron | 30.0% |
| !!! | CCAAAGTTTTTTAGAAAGAG+AGG | + | 15227:6029-6048 | MS.gene36279:CDS | 30.0% |
| !!! | TAAGCCATAGTTTTAAATCG+TGG | + | 15227:2763-2782 | MS.gene36279:intron | 30.0% |
| !!! | TGTTTATAGCTGTTTTTGGT+TGG | + | 15227:4035-4054 | MS.gene36279:CDS | 30.0% |
| AACAAGAAAAGGAAGGCAAA+AGG | + | 15227:5840-5859 | MS.gene36279:CDS | 35.0% | |
| AACAGCTATAAACATGAGAC+CGG | - | 15227:4029-4048 | None:intergenic | 35.0% | |
| AACTATGGCTTAAACCAACA+CGG | - | 15227:2755-2774 | None:intergenic | 35.0% | |
| AACTCCAAAAGTTAGCACAT+TGG | - | 15227:5079-5098 | None:intergenic | 35.0% | |
| AAGTCCAGCAAAGAAATCTA+TGG | + | 15227:3182-3201 | MS.gene36279:CDS | 35.0% | |
| ACCTGCAATAATGTATTGTC+AGG | - | 15227:5483-5502 | None:intergenic | 35.0% | |
| AGATTTATGCAAACTACCTG+TGG | + | 15227:3026-3045 | MS.gene36279:intron | 35.0% | |
| AGCTAAGTGAAACCAAATGT+TGG | - | 15227:3249-3268 | None:intergenic | 35.0% | |
| ATGTTCCTCACAAAATCTAC+TGG | - | 15227:4210-4229 | None:intergenic | 35.0% | |
| CAAAGTTGCCAAACAAGAAA+AGG | + | 15227:5829-5848 | MS.gene36279:CDS | 35.0% | |
| CAACAAGGTTAACAATGTGT+AGG | - | 15227:4091-4110 | None:intergenic | 35.0% | |
| CAACTATGTTGGCAATATCA+AGG | - | 15227:2801-2820 | None:intergenic | 35.0% | |
| CAAGACATAGTTGTCAAATG+TGG | - | 15227:2583-2602 | None:intergenic | 35.0% | |
| CAAGTTAGTACCATTACAAG+TGG | - | 15227:4955-4974 | None:intergenic | 35.0% | |
| CATTTATCAAGTCAATGCTC+CGG | + | 15227:4007-4026 | MS.gene36279:CDS | 35.0% | |
| CATTTGACAACTATGTCTTG+CGG | + | 15227:2583-2602 | MS.gene36279:intron | 35.0% | |
| CCTAAATCCTTGAGAACAAA+AGG | - | 15227:3126-3145 | None:intergenic | 35.0% | |
| CTCTGTAAAGAACCAACATT+TGG | + | 15227:3234-3253 | MS.gene36279:intron | 35.0% | |
| CTTGGTGAAAATGTTGTTGA+TGG | + | 15227:4511-4530 | MS.gene36279:intron | 35.0% | |
| GGAAGAGGAATACTTTCAAA+TGG | + | 15227:4621-4640 | MS.gene36279:intron | 35.0% | |
| GGACATATCACTAGTAAATG+TGG | - | 15227:5022-5041 | None:intergenic | 35.0% | |
| GGCACTAACTACTTAGAATT+TGG | - | 15227:5130-5149 | None:intergenic | 35.0% | |
| GTCTATCACGATAGATTGAT+CGG | - | 15227:4471-4490 | None:intergenic | 35.0% | |
| GTGTCCTAACAGAATTCATA+TGG | + | 15227:5443-5462 | MS.gene36279:intron | 35.0% | |
| GTTTACCTTGCCCATAAAAA+TGG | + | 15227:4290-4309 | MS.gene36279:CDS | 35.0% | |
| TAAGAGAGTTGGATGAGAAT+CGG | - | 15227:4423-4442 | None:intergenic | 35.0% | |
| TACCAGTAACAAGTATGAAG+CGG | + | 15227:2317-2336 | MS.gene36279:CDS | 35.0% | |
| TAGAATCCAACTAGGAATTG+TGG | - | 15227:2958-2977 | None:intergenic | 35.0% | |
| TCAACATCAACATCCTCAAT+AGG | - | 15227:5939-5958 | None:intergenic | 35.0% | |
| TCAAGAAAGAAAACGTGCTT+GGG | + | 15227:3939-3958 | MS.gene36279:CDS | 35.0% | |
| TCCTGACAATACATTATTGC+AGG | + | 15227:5479-5498 | MS.gene36279:intron | 35.0% | |
| TCGAAGACTGCAAATTGATT+TGG | - | 15227:3981-4000 | None:intergenic | 35.0% | |
| TCTATCACGATAGATTGATC+GGG | - | 15227:4470-4489 | None:intergenic | 35.0% | |
| TGTTCCTCACAAAATCTACT+GGG | - | 15227:4209-4228 | None:intergenic | 35.0% | |
| ! | AATATCCCCTTTTGTTCTCA+AGG | + | 15227:3116-3135 | MS.gene36279:intron | 35.0% |
| ! | ATAACCCGCAACAACATTTT+AGG | - | 15227:2641-2660 | None:intergenic | 35.0% |
| ! | CCTTTTGTTCTCAAGGATTT+AGG | + | 15227:3123-3142 | MS.gene36279:intron | 35.0% |
| ! | GGTTGATGTAGATTCAATTG+CGG | - | 15227:2562-2581 | None:intergenic | 35.0% |
| ! | GTCTGAAACTGTTAAATCAG+AGG | + | 15227:5689-5708 | MS.gene36279:CDS | 35.0% |
| ! | TTCATACTTGTTACTGGTAG+TGG | - | 15227:2316-2335 | None:intergenic | 35.0% |
| ! | TTTGCCTTCCTTTTCTTGTT+TGG | - | 15227:5840-5859 | None:intergenic | 35.0% |
| !! | AAAAGCATTTATATGCCAGG+TGG | + | 15227:5404-5423 | MS.gene36279:intron | 35.0% |
| !! | ACCACTAAGCCCATTTTTAT+GGG | - | 15227:4303-4322 | None:intergenic | 35.0% |
| !!! | AATTTAGCTCTGGATTTTGC+AGG | + | 15227:3586-3605 | MS.gene36279:intron | 35.0% |
| !!! | TATAGCTGTTTTTGGTTGGT+AGG | + | 15227:4039-4058 | MS.gene36279:intron | 35.0% |
| !!! | TCTCATGTGCTAGTTTTTGT+GGG | + | 15227:4863-4882 | MS.gene36279:intron | 35.0% |
| AAAAGCAGCACATACTCCAT+TGG | - | 15227:5276-5295 | None:intergenic | 40.0% | |
| AAACAAAAAACAAGTGGGCC+TGG | - | 15227:5328-5347 | None:intergenic | 40.0% | |
| AAACTAGCACATGAGACAAG+AGG | - | 15227:4859-4878 | None:intergenic | 40.0% | |
| AAAGCAGCACATACTCCATT+GGG | - | 15227:5275-5294 | None:intergenic | 40.0% | |
| ACGATTCTGCACAGAGAAAT+AGG | - | 15227:3275-3294 | None:intergenic | 40.0% | |
| AGAAGAAATCGATGCTTTGG+TGG | + | 15227:5548-5567 | MS.gene36279:CDS | 40.0% | |
| ATACGAAGGAACTGTGTTTC+TGG | - | 15227:3356-3375 | None:intergenic | 40.0% | |
| ATATCATCATTCGTTCCACC+TGG | - | 15227:5422-5441 | None:intergenic | 40.0% | |
| CATCAAAAACCTAGATGGTG+TGG | + | 15227:2615-2634 | MS.gene36279:intron | 40.0% | |
| CGATTCTGCACAGAGAAATA+GGG | - | 15227:3274-3293 | None:intergenic | 40.0% | |
| CTCAAGAAAGAAAACGTGCT+TGG | + | 15227:3938-3957 | MS.gene36279:CDS | 40.0% | |
| GAAGAAGGAAGAACCTATTG+AGG | + | 15227:5923-5942 | MS.gene36279:CDS | 40.0% | |
| GACTTGAGGAAAACAAGAAG+AGG | + | 15227:2352-2371 | MS.gene36279:CDS | 40.0% | |
| GGAAAACAAGAAGAGGTTTG+AGG | + | 15227:2359-2378 | MS.gene36279:CDS | 40.0% | |
| GGTTGAAGCAGCAAGATTTA+AGG | + | 15227:4385-4404 | MS.gene36279:CDS | 40.0% | |
| GTCAAGGTCAAGTTCATCAT+GGG | + | 15227:3780-3799 | MS.gene36279:CDS | 40.0% | |
| GTTAGTACCATTACAAGTGG+TGG | - | 15227:4952-4971 | None:intergenic | 40.0% | |
| GTTGCCAAACAAGAAAAGGA+AGG | + | 15227:5833-5852 | MS.gene36279:CDS | 40.0% | |
| TACTGCAATTGAGCCAAAAG+AGG | + | 15227:5770-5789 | MS.gene36279:CDS | 40.0% | |
| TCAAGGTCAAGTTCATCATG+GGG | + | 15227:3781-3800 | MS.gene36279:CDS | 40.0% | |
| TGTCTTGTCTTGAGTGTGAA+AGG | + | 15227:4993-5012 | MS.gene36279:intron | 40.0% | |
| TGTGGCCTAAAATGTTGTTG+CGG | + | 15227:2633-2652 | MS.gene36279:intron | 40.0% | |
| ! | CAACAACATTTTCACCAAGC+TGG | - | 15227:4510-4529 | None:intergenic | 40.0% |
| ! | CATAAAAATGGGCTTAGTGG+TGG | + | 15227:4302-4321 | MS.gene36279:CDS | 40.0% |
| ! | GAAGACTGACTTAGAGAAGA+AGG | + | 15227:5908-5927 | MS.gene36279:CDS | 40.0% |
| ! | GCTACTTTGATTTCATCCAG+TGG | - | 15227:3913-3932 | None:intergenic | 40.0% |
| ! | TCTTCCCAGTAGATTTTGTG+AGG | + | 15227:4202-4221 | MS.gene36279:CDS | 40.0% |
| !! | AGTTTCTAGTCTTGAGGAAG+AGG | + | 15227:4606-4625 | MS.gene36279:intron | 40.0% |
| !! | CACCACTAAGCCCATTTTTA+TGG | - | 15227:4304-4323 | None:intergenic | 40.0% |
| !! | CTAATCTTGTTCTGGAACCT+AGG | + | 15227:3317-3336 | MS.gene36279:CDS | 40.0% |
| !! | GCAATGTTCTCTAAAACTGC+AGG | + | 15227:5302-5321 | MS.gene36279:intron | 40.0% |
| !! | TAAGCCCATTTTTATGGGCA+AGG | - | 15227:4298-4317 | None:intergenic | 40.0% |
| !!! | GTCTCATGTGCTAGTTTTTG+TGG | + | 15227:4862-4881 | MS.gene36279:intron | 40.0% |
| !!! | GTTTTCTTTGGAGCTTCCTT+TGG | - | 15227:5627-5646 | None:intergenic | 40.0% |
| AACCTGCTGCAGAAAAACCT+CGG | + | 15227:5994-6013 | MS.gene36279:CDS | 45.0% | |
| AAGAAAACGTGCTTGGGATG+CGG | + | 15227:3945-3964 | MS.gene36279:CDS | 45.0% | |
| AGACACTAAGGCTATGCTAG+TGG | - | 15227:3058-3077 | None:intergenic | 45.0% | |
| AGCACATGAGACAAGAGGTA+AGG | - | 15227:4854-4873 | None:intergenic | 45.0% | |
| AGTTCCTTCGTATGCTGAAG+AGG | + | 15227:3363-3382 | MS.gene36279:CDS | 45.0% | |
| ATCGATGCTTTGGTGGAAGA+AGG | + | 15227:5555-5574 | MS.gene36279:CDS | 45.0% | |
| CACACTCAAGACAAGACATC+TGG | - | 15227:4991-5010 | None:intergenic | 45.0% | |
| CTTACCTCTTCAGCATACGA+AGG | - | 15227:3370-3389 | None:intergenic | 45.0% | |
| GCCAACATAGTTGTCAACTG+TGG | + | 15227:2808-2827 | MS.gene36279:intron | 45.0% | |
| GCCACAGTTGACAACTATGT+TGG | - | 15227:2812-2831 | None:intergenic | 45.0% | |
| GGCTAGAGAACAAAGACTTG+AGG | + | 15227:2338-2357 | MS.gene36279:CDS | 45.0% | |
| GGTCAAGGTCAAGTTCATCA+TGG | + | 15227:3779-3798 | MS.gene36279:CDS | 45.0% | |
| GGTCATGTCTCTAACTGATG+TGG | - | 15227:4802-4821 | None:intergenic | 45.0% | |
| GTGGCCTAAAATGTTGTTGC+GGG | + | 15227:2634-2653 | MS.gene36279:intron | 45.0% | |
| TAAGGCTATGCTAGTGGCAA+GGG | - | 15227:3052-3071 | None:intergenic | 45.0% | |
| TCGTATGCTGAAGAGGTAAG+CGG | + | 15227:3370-3389 | MS.gene36279:intron | 45.0% | |
| ! | ACAAGACATCTGGAGCATGA+AGG | - | 15227:4981-5000 | None:intergenic | 45.0% |
| ! | AGCCGCTTCATACTTGTTAC+TGG | - | 15227:2322-2341 | None:intergenic | 45.0% |
| ! | CATTTTAGGCCACACCATCT+AGG | - | 15227:2627-2646 | None:intergenic | 45.0% |
| ! | GCCCATAAAAATGGGCTTAG+TGG | + | 15227:4299-4318 | MS.gene36279:CDS | 45.0% |
| ! | TCAGACTTTGGCTCAAGTGT+AGG | - | 15227:5675-5694 | None:intergenic | 45.0% |
| !! | TTTGGAGCTCGAATTTTCCG+AGG | - | 15227:6014-6033 | None:intergenic | 45.0% |
| !!! | GTGCTAGTTTTTGTGGGTTC+AGG | + | 15227:4869-4888 | MS.gene36279:intron | 45.0% |
| CAAGTTCATCATGGGGAAGG+TGG | + | 15227:3788-3807 | MS.gene36279:intron | 50.0% | |
| CCTCGAAACAGTGAAACCAG+AGG | + | 15227:5800-5819 | MS.gene36279:CDS | 50.0% | |
| CTAAGGCTATGCTAGTGGCA+AGG | - | 15227:3053-3072 | None:intergenic | 50.0% | |
| GGTCAAGTTCATCATGGGGA+AGG | + | 15227:3785-3804 | MS.gene36279:CDS | 50.0% | |
| GTTGTCAACTGTGGCTGTCA+TGG | + | 15227:2817-2836 | MS.gene36279:intron | 50.0% | |
| TGCTGAGCCACCACTTGTAA+TGG | + | 15227:4942-4961 | MS.gene36279:intron | 50.0% | |
| TGGCTGGAGAGGATTTGCAT+TGG | + | 15227:4322-4341 | MS.gene36279:CDS | 50.0% | |
| TTGCGGCCACAATTCCTAGT+TGG | + | 15227:2949-2968 | MS.gene36279:intron | 50.0% | |
| ! | AAAATGGGCTTAGTGGTGGC+TGG | + | 15227:4306-4325 | MS.gene36279:CDS | 50.0% |
| ! | CCTCTGGTTTCACTGTTTCG+AGG | - | 15227:5803-5822 | None:intergenic | 50.0% |
| ! | TCGAGGTGTGCATCCTCTTT+TGG | - | 15227:5786-5805 | None:intergenic | 50.0% |
| ! | TTCCGAGGTTTTTCTGCAGC+AGG | - | 15227:5999-6018 | None:intergenic | 50.0% |
| ! | TTTTGCAGGCCAGTGTTGTG+TGG | + | 15227:3600-3619 | MS.gene36279:intron | 50.0% |
| !! | GTTCTCTAAAACTGCAGGCC+AGG | + | 15227:5307-5326 | MS.gene36279:intron | 50.0% |
| ACCTCCTCTGCAACTGTGGA+AGG | - | 15227:3756-3775 | None:intergenic | 55.0% | |
| ACCTTCCACAGTTGCAGAGG+AGG | + | 15227:3752-3771 | MS.gene36279:CDS | 55.0% | |
| CACAGTTGCAGAGGAGGTCA+AGG | + | 15227:3758-3777 | MS.gene36279:CDS | 55.0% | |
| CAGACCTTCCACAGTTGCAG+AGG | + | 15227:3749-3768 | MS.gene36279:CDS | 55.0% | |
| CTTGACCTCCTCTGCAACTG+TGG | - | 15227:3760-3779 | None:intergenic | 55.0% | |
| GGCAACTTTGTAGCTGCCTC+TGG | - | 15227:5819-5838 | None:intergenic | 55.0% | |
| TCAGTTACGCATACGCTGCG+AGG | + | 15227:3887-3906 | MS.gene36279:intron | 55.0% | |
| TGCAGAGGAGGTCAAGGTCA+AGG | + | 15227:3764-3783 | MS.gene36279:CDS | 55.0% | |
| ATGCTAGTGGCAAGGGCCAC+AGG | - | 15227:3045-3064 | None:intergenic | 60.0% | |
| ACGTGCTTGGGATGCGGCAG+AGG | + | 15227:3951-3970 | MS.gene36279:CDS | 65.0% | |
| GGGCTTAGTGGTGGCTGGAG+AGG | + | 15227:4311-4330 | MS.gene36279:CDS | 65.0% | |
| !! | CTGGCACGAGAAGAGCGCCT+AGG | - | 15227:3337-3356 | None:intergenic | 65.0% |
| CGCATACGCTGCGAGGCCAC+TGG | + | 15227:3894-3913 | MS.gene36279:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15227 | gene | 2297 | 6055 | 2297 | ID=MS.gene36279 |
| 15227 | mRNA | 2297 | 6055 | 2297 | ID=MS.gene36279.t1;Parent=MS.gene36279 |
| 15227 | exon | 2297 | 2380 | 2297 | ID=MS.gene36279.t1.exon1;Parent=MS.gene36279.t1 |
| 15227 | CDS | 2297 | 2380 | 2297 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| 15227 | exon | 3138 | 3203 | 3138 | ID=MS.gene36279.t1.exon2;Parent=MS.gene36279.t1 |
| 15227 | CDS | 3138 | 3203 | 3138 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| 15227 | exon | 3289 | 3384 | 3289 | ID=MS.gene36279.t1.exon3;Parent=MS.gene36279.t1 |
| 15227 | CDS | 3289 | 3384 | 3289 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| 15227 | exon | 3742 | 3806 | 3742 | ID=MS.gene36279.t1.exon4;Parent=MS.gene36279.t1 |
| 15227 | CDS | 3742 | 3806 | 3742 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| 15227 | exon | 3891 | 4056 | 3891 | ID=MS.gene36279.t1.exon5;Parent=MS.gene36279.t1 |
| 15227 | CDS | 3891 | 4056 | 3891 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| 15227 | exon | 4200 | 4406 | 4200 | ID=MS.gene36279.t1.exon6;Parent=MS.gene36279.t1 |
| 15227 | CDS | 4200 | 4406 | 4200 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| 15227 | exon | 5501 | 6055 | 5501 | ID=MS.gene36279.t1.exon7;Parent=MS.gene36279.t1 |
| 15227 | CDS | 5501 | 6055 | 5501 | ID=cds.MS.gene36279.t1;Parent=MS.gene36279.t1 |
| Gene Sequence |
| Protein sequence |
