AlfalfaGEDB | MS.gene36387

M. sativa cultivar XinJiangDaYe / MS.gene36387

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36387.t1	XP_003597642.1	93.7	399	18	1	1	399	1	392	2.10E-207	731.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36387.t1	Q8S3D2	52.8	303	105	11	105	391	86	366	1.7e-59	231.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36387.t1	G7IHW4	93.7	399	18	1	1	399	1	392	1.5e-207	731.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene36387.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36387.t1	MTR_2g100490	93.734	399	18	1	1	399	1	392	0.0	722
MS.gene36387.t1	MTR_8g015450	50.870	460	112	21	1	388	1	418	1.11e-104	316
MS.gene36387.t1	MTR_3g101810	62.366	93	34	1	268	360	143	234	8.43e-35	130
MS.gene36387.t1	MTR_8g093500	63.043	92	33	1	269	360	87	177	5.78e-34	127
MS.gene36387.t1	MTR_5g017210	61.682	107	39	2	258	363	98	203	1.76e-28	112
MS.gene36387.t1	MTR_7g069590	52.941	68	32	0	303	370	32	99	7.70e-20	85.9
MS.gene36387.t1	MTR_1g018090	62.963	54	20	0	306	359	283	336	8.68e-17	81.6
MS.gene36387.t1	MTR_5g079500	58.929	56	23	0	304	359	225	280	3.87e-16	79.0
MS.gene36387.t1	MTR_1g106460	49.254	67	34	0	293	359	234	300	7.38e-16	78.6
MS.gene36387.t1	MTR_5g005110	55.357	56	25	0	304	359	231	286	2.04e-15	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36387.t1	AT3G21330	54.639	291	118	8	105	391	86	366	3.24e-84	261
MS.gene36387.t1	AT4G00120	61.798	89	33	1	272	360	88	175	1.50e-29	114
MS.gene36387.t1	AT3G50330	52.941	136	60	4	227	360	49	182	4.31e-26	105
MS.gene36387.t1	AT5G67060	64.130	92	32	1	269	360	83	173	7.88e-26	104
MS.gene36387.t1	AT5G67060	64.130	92	32	1	269	360	95	185	9.33e-26	104
MS.gene36387.t1	AT5G09750	62.366	93	34	1	269	361	92	183	3.48e-24	100
MS.gene36387.t1	AT5G01305	57.353	68	29	0	295	362	35	102	1.44e-20	88.6
MS.gene36387.t1	AT1G66470	39.450	109	64	1	251	359	151	257	6.39e-17	81.3
MS.gene36387.t1	AT5G37800	46.067	89	40	1	279	359	175	263	8.61e-17	80.9
MS.gene36387.t1	AT5G43175	46.269	67	36	0	293	359	128	194	2.74e-16	77.8

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Find 81 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGATGAATTTGGTTGC+TGG	0.427124	2.2:-2687675	None:intergenic
AAAGTCAAAGAAACCAAGAT+GGG	0.607623	2.2:+2687618	MS.gene36387:CDS
AAATGATCCACAAACTGTGG+CGG	0.666151	2.2:+2687846	MS.gene36387:CDS
AAATTGATATTTGATGAACC+AGG	0.643576	2.2:-2687652	None:intergenic
AACGGTATCTCCGGCATCCT+CGG	0.479015	2.2:+2687450	MS.gene36387:CDS
AACTTTAGTGCAGTTTCCTC+TGG	0.411517	2.2:+2687361	MS.gene36387:CDS
AAGGAGAAGGCTATGTTTGC+AGG	0.348753	2.2:-2688054	None:intergenic
AAGTGATGGAAAAGCCTAAA+AGG	0.336703	2.2:+2687806	MS.gene36387:CDS
AATATTGGATGTTGACATTA+GGG	0.299941	2.2:-2688101	None:intergenic
AATCAGGAGCTGGAAACAGT+TGG	0.528348	2.2:+2687089	MS.gene36387:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCAAAGAAACCAAGAT+GGG	+	chr2.2:2687618-2687637	MS.gene36387:CDS	30.0%
ACTAATTCTGTTCAAGATGA+TGG	+	chr2.2:2687295-2687314	MS.gene36387:CDS	30.0%
ACTGCAAAAACAGAAACTTA+TGG	+	chr2.2:2687338-2687357	MS.gene36387:CDS	30.0%
AGAAACAAAGACATGCAATA+TGG	+	chr2.2:2687406-2687425	MS.gene36387:CDS	30.0%
GAATATTGGATGTTGACATT+AGG	-	chr2.2:2688105-2688124	None:intergenic	30.0%
TCTTCTTCTTCTACTGAATT+TGG	+	chr2.2:2687568-2687587	MS.gene36387:CDS	30.0%
TTTGCAGTCAGAAAAAATCA+TGG	-	chr2.2:2687326-2687345	None:intergenic	30.0%
AAAAACACTTGAACTTGGGT+TGG	-	chr2.2:2687038-2687057	None:intergenic	35.0%
AAACTGATGAATTTGGTTGC+TGG	-	chr2.2:2687678-2687697	None:intergenic	35.0%
AGTGACACATAATTGTTAGG+TGG	-	chr2.2:2687166-2687185	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	2686935	2688134	2686935	ID=MS.gene36387
chr2.2	mRNA	2686935	2688134	2686935	ID=MS.gene36387.t1;Parent=MS.gene36387
chr2.2	exon	2686935	2688134	2686935	ID=MS.gene36387.t1.exon1;Parent=MS.gene36387.t1
chr2.2	CDS	2686935	2688134	2686935	ID=cds.MS.gene36387.t1;Parent=MS.gene36387.t1

Gene Sequence

>MS.gene36387

ATGGATTGTATTAGTTGGGATGATGACTCACAATTTGTTGCCAACATACCAATCTTGAGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTCCAACCCAAGTTCAAGTGTTTTTAACTATCAAATGCAAGAGATGCAGAAGGTTGAATCAGGAGCTGGAAACAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATAGATCCACCTAACAATTATGTGTCACTGCCTGAATTCAACATGGCCCACCAACCAATCAGCAAGAGTACTACTACATGCTCACTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACTAACAGTAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCCTCTGGTGAATCTGAGAGTACTTATGCTAGAAACAAAGACATGCAATATGGATTCAACGAACTAGATCAGGAAACGGTATCTCCGGCATCCTCGGATCAAGGTAAAATCATTGATAATTCGAAGGTTCATACCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTACTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTTTCGTTGTCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTGACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGAGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGAACTGGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTCCTCCTGCAAACATAGCCTTCTCCTTCAACCAGTCAATTCCCATGCAAAACCCTAATGTCAACATCCAATATTCTCATGATTGA

Protein sequence

>MS.gene36387.t1

MDCISWDDDSQFVANIPILRNTQPQDFARDYSMSNPSSSVFNYQMQEMQKVESGAGNSWEETLIFQSYPSLSVNIDPPNNYVSLPEFNMAHQPISKSTTTCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSGESESTYARNKDMQYGFNELDQETVSPASSDQGKIIDNSKVHTTKRTNIDQYDPCFSITTQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKELENLGNKIDTMNNCPPANIAFSFNQSIPMQNPNVNIQYSHD