AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36408

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36408.t1 MTR_8g028150 88.136 118 12 1 80 197 229 344 7.72e-64 203
MS.gene36408.t1 MTR_7g116890 68.908 119 30 2 84 197 229 345 2.13e-44 152
MS.gene36408.t1 MTR_8g070820 58.904 73 28 1 125 197 301 371 2.71e-19 85.1
MS.gene36408.t1 MTR_8g077950 60.526 76 27 2 123 197 251 324 4.40e-19 84.0
MS.gene36408.t1 MTR_8g077950 60.526 76 27 2 123 197 249 322 4.69e-19 83.6
MS.gene36408.t1 MTR_8g077950 60.526 76 27 2 123 197 191 264 5.92e-19 82.8
MS.gene36408.t1 MTR_5g028850 60.274 73 27 1 125 197 302 372 2.55e-18 82.4
MS.gene36408.t1 MTR_5g028850 60.274 73 27 1 125 197 300 370 3.01e-18 82.0
MS.gene36408.t1 MTR_8g070820 44.068 118 52 4 84 197 238 345 4.57e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36408.t1 AT2G46270 59.813 107 33 3 90 196 226 322 5.50e-30 114
MS.gene36408.t1 AT2G46270 59.813 107 33 3 90 196 226 322 5.50e-30 114
MS.gene36408.t1 AT2G46270 75.362 69 15 1 128 196 233 299 8.65e-24 97.1
MS.gene36408.t1 AT2G46270 75.362 69 15 1 128 196 233 299 8.65e-24 97.1
MS.gene36408.t1 AT4G01120 51.000 100 36 4 97 196 226 312 4.95e-20 86.7
MS.gene36408.t1 AT2G35530 51.546 97 34 3 109 197 278 369 7.84e-20 86.7
MS.gene36408.t1 AT1G32150 57.333 75 28 2 125 197 287 359 1.68e-17 79.7
MS.gene36408.t1 AT4G36730 54.167 72 31 1 126 197 215 284 1.50e-15 73.9
MS.gene36408.t1 AT4G36730 54.167 72 31 1 126 197 217 286 1.64e-15 73.9

Find 53 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTATCTTCAGGCATATTA+TGG 0.170895 2.2:-2870732 MS.gene36408:CDS
GTTGCCATCGCTTCCATTAC+TGG 0.238359 2.2:+2870093 None:intergenic
TGCATTGACTGCCGAGAATT+TGG 0.257432 2.2:-2868717 MS.gene36408:CDS
GTTGGACCTGTACTTTCTTC+AGG 0.296175 2.2:-2869520 MS.gene36408:CDS
TTTGGAAGCGGCAGTCTCTT+TGG 0.337449 2.2:+2869583 None:intergenic
GCAACCAGTGCTGCAGAAAA+TGG 0.342628 2.2:-2869542 MS.gene36408:CDS
CGCTTCCATTACTGGAAGTC+TGG 0.357892 2.2:+2870101 None:intergenic
CGAGAATTTGGTGCTGAAAT+CGG 0.374258 2.2:-2868705 MS.gene36408:CDS
TGTGGAACACTGGTGGAAAT+AGG 0.380405 2.2:+2869463 None:intergenic
CGATTTCAGCACCAAATTCT+CGG 0.384484 2.2:+2868706 None:intergenic
ACAGGCTGAGGCTGAAGAAT+TGG 0.391234 2.2:-2868753 MS.gene36408:intron
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 2.2:+2870687 None:intergenic
GCCTCCTGAAGCTTGGATGC+AGG 0.426706 2.2:-2869425 MS.gene36408:intron
TGTCTGTTGTATGTATCTTC+AGG 0.427770 2.2:-2870742 None:intergenic
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 2.2:-2870681 MS.gene36408:CDS
TGTATCTTCAGGCATATTAT+GGG 0.464465 2.2:-2870731 MS.gene36408:CDS
GAAATCGGAAATGAATGAAT+TGG 0.472002 2.2:-2868690 MS.gene36408:CDS
TTCAGGTATGACCACATCAC+TGG 0.473232 2.2:-2869503 MS.gene36408:CDS
AGTGGTTGTTGGTGTTCCAT+TGG 0.474613 2.2:+2869958 None:intergenic
GAAGATCCAGGCTTAGGCTT+AGG 0.474677 2.2:-2869210 MS.gene36408:CDS
AGTACCTGCATCCAAGCTTC+AGG 0.494330 2.2:+2869421 None:intergenic
ACCAGTGTTCCACAGCCTTG+TGG 0.495543 2.2:-2869454 MS.gene36408:CDS
GGAAGCGATGGCAACACTAC+AGG 0.500726 2.2:-2870085 MS.gene36408:CDS
TTTATCATACCAGTGGTTGT+TGG 0.502643 2.2:+2869947 None:intergenic
CTGCTAGAAGATCCAGGCTT+AGG 0.520262 2.2:-2869216 MS.gene36408:CDS
GGCAAAACTCCACAAGGCTG+TGG 0.541143 2.2:+2869445 None:intergenic
TTGCTTCCTAAGCCTAAGCC+TGG 0.544129 2.2:+2869204 None:intergenic
GTGAATCTGCTAGAAGATCC+AGG 0.554001 2.2:-2869222 MS.gene36408:CDS
TCCACAAGGCTGTGGAACAC+TGG 0.554932 2.2:+2869453 None:intergenic
CCAGTGCTGCAGAAAATGGT+TGG 0.563429 2.2:-2869538 MS.gene36408:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 2.2:-2870084 MS.gene36408:CDS
GTGAGCTGAAACGTGAGAGG+AGG 0.579172 2.2:-2869258 MS.gene36408:CDS
AATGGAACACCAACAACCAC+TGG 0.585041 2.2:-2869956 MS.gene36408:intron
TTACTTGAACAGATGGAGAA+GGG 0.588445 2.2:-2869634 MS.gene36408:intron
ATTACTTGAACAGATGGAGA+AGG 0.590419 2.2:-2869635 MS.gene36408:intron
TGACCACATCACTGGAACTG+AGG 0.592621 2.2:-2869495 MS.gene36408:CDS
ACAAGGCTGTGGAACACTGG+TGG 0.593279 2.2:+2869456 None:intergenic
ACTTCCAGTAATGGAAGCGA+TGG 0.593651 2.2:-2870097 MS.gene36408:CDS
GTTCCTCAGTTCCAGTGATG+TGG 0.596954 2.2:+2869492 None:intergenic
GGGCTCCAGACTTCCAGTAA+TGG 0.604188 2.2:-2870106 MS.gene36408:CDS
ACACTGGTGGAAATAGGCGA+AGG 0.605436 2.2:+2869469 None:intergenic
TATCAACAGTGTGGATACTG+AGG 0.615133 2.2:-2870127 MS.gene36408:intron
GTCATACCTGAAGAAAGTAC+AGG 0.620947 2.2:+2869514 None:intergenic
TATGAACATCACAGATGACC+AGG 0.623111 2.2:+2870663 None:intergenic
AGAGTGAGCTGAAACGTGAG+AGG 0.623183 2.2:-2869261 MS.gene36408:CDS
CAATGTTATAAACAGACCAA+TGG 0.632904 2.2:-2869974 MS.gene36408:intron
ACCTGCATCCAAGCTTCAGG+AGG 0.636392 2.2:+2869424 None:intergenic
GCTGAGTTGAAATATGGTGG+TGG 0.656136 2.2:+2870693 None:intergenic
TCAGGAGGCAAAACTCCACA+AGG 0.658647 2.2:+2869439 None:intergenic
ATCAACAGTGTGGATACTGA+GGG 0.658895 2.2:-2870126 MS.gene36408:intron
CACTGGTGGAAATAGGCGAA+GGG 0.662789 2.2:+2869470 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.711269 2.2:+2870690 None:intergenic
AAGCGATGGCAACACTACAG+GGG 0.742066 2.2:-2870083 MS.gene36408:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACATTCAATTTTTT+TGG - chr2.2:2869649-2869668 MS.gene36408:intron 10.0%
!! AAATCCATCATAATTATTTA+CGG + chr2.2:2868959-2868978 None:intergenic 15.0%
!! TTATAAATAAAGTACATAAC+CGG + chr2.2:2869336-2869355 None:intergenic 15.0%
!! AAAGAAAATGTTATCACAAA+AGG - chr2.2:2870554-2870573 MS.gene36408:intron 20.0%
!! AATACCGTAAATAATTATGA+TGG - chr2.2:2868952-2868971 MS.gene36408:intron 20.0%
!! ATAAACAATACTAGTTATTC+TGG - chr2.2:2869434-2869453 MS.gene36408:CDS 20.0%
!! ATAATACACAGAAATATCAA+TGG + chr2.2:2868740-2868759 None:intergenic 20.0%
!! ATAATTATTTACGGTATTCA+GGG + chr2.2:2868950-2868969 None:intergenic 20.0%
!! GTACTTATGAATTATATTCA+AGG - chr2.2:2868851-2868870 MS.gene36408:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG + chr2.2:2869587-2869606 None:intergenic 20.0%
!! TATAAATAAAGTACATAACC+GGG + chr2.2:2869335-2869354 None:intergenic 20.0%
!! TGAAAACAACTTATAGAATA+TGG - chr2.2:2870395-2870414 MS.gene36408:intron 20.0%
!!! ATTTTCATGCTTCAATTTTT+CGG + chr2.2:2869363-2869382 None:intergenic 20.0%
!!! TCAATTTTTTTGGTTTCATA+AGG - chr2.2:2869659-2869678 MS.gene36408:intron 20.0%
! AAAAAATCAAAACTTACAGC+AGG + chr2.2:2868890-2868909 None:intergenic 25.0%
! ATATAAACATTCAACCACAA+AGG + chr2.2:2868829-2868848 None:intergenic 25.0%
! CATAATTATTTACGGTATTC+AGG + chr2.2:2868951-2868970 None:intergenic 25.0%
! TAATTATTTACGGTATTCAG+GGG + chr2.2:2868949-2868968 None:intergenic 25.0%
!! GATATTTCTGTGTATTATAC+TGG - chr2.2:2868742-2868761 MS.gene36408:CDS 25.0%
!! GTGATAACATTTTCTTTCAA+GGG + chr2.2:2870551-2870570 None:intergenic 25.0%
!! TGTGATAACATTTTCTTTCA+AGG + chr2.2:2870552-2870571 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+CGG - chr2.2:2870504-2870523 MS.gene36408:intron 25.0%
!! TTTTCATGCTTCAATTTTTC+GGG + chr2.2:2869362-2869381 None:intergenic 25.0%
!!! TATTTGTCACGTGTTTTTAT+GGG - chr2.2:2870233-2870252 MS.gene36408:intron 25.0%
!!! TGGCTATTATAATTTTTTCC+CGG - chr2.2:2869314-2869333 MS.gene36408:intron 25.0%
!!! TTATTTGTCACGTGTTTTTA+TGG - chr2.2:2870232-2870251 MS.gene36408:intron 25.0%
AATAAGCTGAAAAGAGCTTA+TGG + chr2.2:2870350-2870369 None:intergenic 30.0%
ACTGACACTAAAGTAATTCT+TGG - chr2.2:2870061-2870080 MS.gene36408:intron 30.0%
AGTATTGTTTATCATACCAG+TGG + chr2.2:2869426-2869445 None:intergenic 30.0%
ATGTAATTAACTCTCAAACG+AGG + chr2.2:2869639-2869658 None:intergenic 30.0%
ATGTATCTTCAGGCATATTA+TGG - chr2.2:2868631-2868650 MS.gene36408:CDS 30.0%
CAATGTTATAAACAGACCAA+TGG - chr2.2:2869389-2869408 MS.gene36408:intron 30.0%
CCAATTGTTAATGCATGATA+AGG - chr2.2:2869553-2869572 MS.gene36408:CDS 30.0%
CCTTATCATGCATTAACAAT+TGG + chr2.2:2869556-2869575 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG - chr2.2:2869453-2869472 MS.gene36408:CDS 30.0%
GAAATCGGAAATGAATGAAT+TGG - chr2.2:2870673-2870692 MS.gene36408:intron 30.0%
GATATATCATATCAACAGTG+TGG - chr2.2:2869227-2869246 MS.gene36408:CDS 30.0%
GTACTAATTACTTGAACAGA+TGG - chr2.2:2869722-2869741 MS.gene36408:intron 30.0%
TAAACACATATGAGACTGTT+CGG - chr2.2:2870294-2870313 MS.gene36408:intron 30.0%
TGTATCTTCAGGCATATTAT+GGG - chr2.2:2868632-2868651 MS.gene36408:CDS 30.0%
TTTAGTGTCAGTAAAAGACA+AGG + chr2.2:2870053-2870072 None:intergenic 30.0%
! CATTGGTCTGTTTATAACAT+TGG + chr2.2:2869391-2869410 None:intergenic 30.0%
!! AATTATGATGGATTTGACCT+GGG - chr2.2:2868964-2868983 MS.gene36408:intron 30.0%
!! TAATTATGATGGATTTGACC+TGG - chr2.2:2868963-2868982 MS.gene36408:intron 30.0%
!! TTTTATGGGTTTGTTTGGAT+TGG - chr2.2:2870247-2870266 MS.gene36408:intron 30.0%
AAACTATCCTGAAGAGCTTA+TGG + chr2.2:2870374-2870393 None:intergenic 35.0%
AACATTCAACCACAAAGGTT+TGG + chr2.2:2868824-2868843 None:intergenic 35.0%
ATTACTTGAACAGATGGAGA+AGG - chr2.2:2869728-2869747 MS.gene36408:intron 35.0%
CTTAATGTACCAAACCTTTG+TGG - chr2.2:2868812-2868831 MS.gene36408:intron 35.0%
CTTATTTCCATAAGCTCTTC+AGG - chr2.2:2870364-2870383 MS.gene36408:intron 35.0%
GAATCATTTGATACCAAGAC+TGG - chr2.2:2869611-2869630 MS.gene36408:CDS 35.0%
GTGTTTCCAGATGATTTAGT+TGG + chr2.2:2869030-2869049 None:intergenic 35.0%
TCAATGAATTGTTGACACCA+CGG + chr2.2:2869507-2869526 None:intergenic 35.0%
TTACTTGAACAGATGGAGAA+GGG - chr2.2:2869729-2869748 MS.gene36408:intron 35.0%
TTTATCATACCAGTGGTTGT+TGG + chr2.2:2869419-2869438 None:intergenic 35.0%
!! ATTATGATGGATTTGACCTG+GGG - chr2.2:2868965-2868984 MS.gene36408:intron 35.0%
!! CGTGTTTTTATGGGTTTGTT+TGG - chr2.2:2870242-2870261 MS.gene36408:intron 35.0%
AAACTTACAGCAGGTGAAGA+TGG + chr2.2:2868881-2868900 None:intergenic 40.0%
ATCAACAGTGTGGATACTGA+GGG - chr2.2:2869237-2869256 MS.gene36408:CDS 40.0%
ATCATCTGGAAACACTGATC+AGG - chr2.2:2869035-2869054 MS.gene36408:intron 40.0%
CGATTTCAGCACCAAATTCT+CGG + chr2.2:2870660-2870679 None:intergenic 40.0%
CGTTCTTATCTCCTCTATAC+AGG - chr2.2:2870592-2870611 MS.gene36408:intron 40.0%
GAGACACCAACTAAATCATC+TGG - chr2.2:2869021-2869040 MS.gene36408:intron 40.0%
TATCAACAGTGTGGATACTG+AGG - chr2.2:2869236-2869255 MS.gene36408:CDS 40.0%
TATGAACATCACAGATGACC+AGG + chr2.2:2868703-2868722 None:intergenic 40.0%
TCATCTGGAAACACTGATCA+GGG - chr2.2:2869036-2869055 MS.gene36408:intron 40.0%
TTCAGCTCACTCTCATTCTA+AGG + chr2.2:2870095-2870114 None:intergenic 40.0%
! ATAGGAAGTGCAGTTGATTC+TGG + chr2.2:2869143-2869162 None:intergenic 40.0%
! GATAACTGACACCGTCTTTT+TGG + chr2.2:2869801-2869820 None:intergenic 40.0%
! GTCATACCTGAAGAAAGTAC+AGG + chr2.2:2869852-2869871 None:intergenic 40.0%
!! CGAGAATTTGGTGCTGAAAT+CGG - chr2.2:2870658-2870677 MS.gene36408:intron 40.0%
!! TACGAGTTTGTTGCTCTGTT+AGG - chr2.2:2869174-2869193 MS.gene36408:intron 40.0%
!! TTATGATGGATTTGACCTGG+GGG - chr2.2:2868966-2868985 MS.gene36408:intron 40.0%
AATGGAACACCAACAACCAC+TGG - chr2.2:2869407-2869426 MS.gene36408:intron 45.0%
ACTCGTAGAGCAAGGAAGAT+AGG + chr2.2:2869161-2869180 None:intergenic 45.0%
AGCAACAAACTCGTAGAGCA+AGG + chr2.2:2869169-2869188 None:intergenic 45.0%
CAGGGGATGATGTAAAGCTT+CGG + chr2.2:2868932-2868951 None:intergenic 45.0%
CTACAGGGGTGAGAAATTTC+TGG - chr2.2:2869294-2869313 MS.gene36408:intron 45.0%
GAACAAACCTCAGTGATAGC+CGG + chr2.2:2869107-2869126 None:intergenic 45.0%
GAGCATATAGAACCAGCGTA+TGG - chr2.2:2870319-2870338 MS.gene36408:intron 45.0%
GGCTACATGTACATGCATCA+GGG + chr2.2:2870530-2870549 None:intergenic 45.0%
GTCATGAATGACTGTAACCG+TGG - chr2.2:2869487-2869506 MS.gene36408:CDS 45.0%
GTGAATCTGCTAGAAGATCC+AGG - chr2.2:2870141-2870160 MS.gene36408:intron 45.0%
GTTGCTCTGTTAGGTTCATG+TGG - chr2.2:2869183-2869202 MS.gene36408:intron 45.0%
GTTGGACCTGTACTTTCTTC+AGG - chr2.2:2869843-2869862 MS.gene36408:intron 45.0%
TATAGAACCAGCGTATGGCA+TGG - chr2.2:2870324-2870343 MS.gene36408:intron 45.0%
TATCTCCTCTATACAGGCTG+AGG - chr2.2:2870598-2870617 MS.gene36408:intron 45.0%
TGTGGAACACTGGTGGAAAT+AGG + chr2.2:2869903-2869922 None:intergenic 45.0%
TTCAGGTATGACCACATCAC+TGG - chr2.2:2869860-2869879 MS.gene36408:intron 45.0%
! ACTTCCAGTAATGGAAGCGA+TGG - chr2.2:2869266-2869285 MS.gene36408:CDS 45.0%
! AGTGGTTGTTGGTGTTCCAT+TGG + chr2.2:2869408-2869427 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG + chr2.2:2868679-2868698 None:intergenic 45.0%
! GCAGCTGAGTTGAAATATGG+TGG + chr2.2:2868676-2868695 None:intergenic 45.0%
! GCTGAGTTGAAATATGGTGG+TGG + chr2.2:2868673-2868692 None:intergenic 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG + chr2.2:2869012-2869031 None:intergenic 45.0%
!! TGACACCGTCTTTTTGGAAG+CGG + chr2.2:2869795-2869814 None:intergenic 45.0%
!! TGCATTGACTGCCGAGAATT+TGG - chr2.2:2870646-2870665 MS.gene36408:intron 45.0%
AAGCGATGGCAACACTACAG+GGG - chr2.2:2869280-2869299 MS.gene36408:intron 50.0%
ACACTGGTGGAAATAGGCGA+AGG + chr2.2:2869897-2869916 None:intergenic 50.0%
ACAGGCTGAGGCTGAAGAAT+TGG - chr2.2:2870610-2870629 MS.gene36408:intron 50.0%
AGAGTGAGCTGAAACGTGAG+AGG - chr2.2:2870102-2870121 MS.gene36408:CDS 50.0%
AGGAAAACCGGCTATCACTG+AGG - chr2.2:2869097-2869116 MS.gene36408:intron 50.0%
AGTACCTGCATCCAAGCTTC+AGG + chr2.2:2869945-2869964 None:intergenic 50.0%
CACTGGTGGAAATAGGCGAA+GGG + chr2.2:2869896-2869915 None:intergenic 50.0%
CCAGTGCTGCAGAAAATGGT+TGG - chr2.2:2869825-2869844 MS.gene36408:intron 50.0%
CGCTTCCATTACTGGAAGTC+TGG + chr2.2:2869265-2869284 None:intergenic 50.0%
CTGCTAGAAGATCCAGGCTT+AGG - chr2.2:2870147-2870166 MS.gene36408:intron 50.0%
GAAGATCCAGGCTTAGGCTT+AGG - chr2.2:2870153-2870172 MS.gene36408:intron 50.0%
GAAGCGATGGCAACACTACA+GGG - chr2.2:2869279-2869298 MS.gene36408:intron 50.0%
GCAACCAGTGCTGCAGAAAA+TGG - chr2.2:2869821-2869840 MS.gene36408:intron 50.0%
GGGCTACATGTACATGCATC+AGG + chr2.2:2870531-2870550 None:intergenic 50.0%
GTTCCTCAGTTCCAGTGATG+TGG + chr2.2:2869874-2869893 None:intergenic 50.0%
GTTGCCATCGCTTCCATTAC+TGG + chr2.2:2869273-2869292 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG + chr2.2:2869927-2869946 None:intergenic 50.0%
TGACCACATCACTGGAACTG+AGG - chr2.2:2869868-2869887 MS.gene36408:intron 50.0%
TTCAGCCTCAGCCTGTATAG+AGG + chr2.2:2870606-2870625 None:intergenic 50.0%
TTGCTTCCTAAGCCTAAGCC+TGG + chr2.2:2870162-2870181 None:intergenic 50.0%
TTTGGAAGCGGCAGTCTCTT+TGG + chr2.2:2869783-2869802 None:intergenic 50.0%
! CCAACCATTTTCTGCAGCAC+TGG + chr2.2:2869828-2869847 None:intergenic 50.0%
! GACTGCCGCTTCCAAAAAGA+CGG - chr2.2:2869787-2869806 MS.gene36408:intron 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG - chr2.2:2869931-2869950 MS.gene36408:intron 50.0%
!! TTGAAAGTGCTGAGCTAGCG+TGG - chr2.2:2869072-2869091 MS.gene36408:intron 50.0%
ACAAGGCTGTGGAACACTGG+TGG + chr2.2:2869910-2869929 None:intergenic 55.0%
ACATGCATCAGGGCCGTGTT+TGG + chr2.2:2870520-2870539 None:intergenic 55.0%
ACCAGTGTTCCACAGCCTTG+TGG - chr2.2:2869909-2869928 MS.gene36408:intron 55.0%
ACCTGCATCCAAGCTTCAGG+AGG + chr2.2:2869942-2869961 None:intergenic 55.0%
CTTATGGCCATGCCATACGC+TGG + chr2.2:2870334-2870353 None:intergenic 55.0%
GCTAGCGTGGAGAGGAAAAC+CGG - chr2.2:2869085-2869104 MS.gene36408:intron 55.0%
GGAAGCGATGGCAACACTAC+AGG - chr2.2:2869278-2869297 MS.gene36408:intron 55.0%
GGCAAAACTCCACAAGGCTG+TGG + chr2.2:2869921-2869940 None:intergenic 55.0%
GGGCTCCAGACTTCCAGTAA+TGG - chr2.2:2869257-2869276 MS.gene36408:CDS 55.0%
GTGAGCTGAAACGTGAGAGG+AGG - chr2.2:2870105-2870124 MS.gene36408:CDS 55.0%
TCCACAAGGCTGTGGAACAC+TGG + chr2.2:2869913-2869932 None:intergenic 55.0%
TTCAACTCAGCTGCTGCTCC+TGG - chr2.2:2868682-2868701 MS.gene36408:CDS 55.0%
! CTCAAACGAGGTGCCAGTCT+TGG + chr2.2:2869627-2869646 None:intergenic 55.0%
GCCTCCTGAAGCTTGGATGC+AGG - chr2.2:2869938-2869957 MS.gene36408:intron 60.0%
TGACCTGGGGGAAACTACGC+AGG - chr2.2:2868978-2868997 MS.gene36408:intron 60.0%
! AGTGCTGAGCTAGCGTGGAG+AGG - chr2.2:2869077-2869096 MS.gene36408:intron 60.0%
CAGCCTGCGTAGTTTCCCCC+AGG + chr2.2:2868984-2869003 None:intergenic 65.0%
CTGGGGGAAACTACGCAGGC+TGG - chr2.2:2868982-2869001 MS.gene36408:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2868631 2870754 2868631 ID=MS.gene36408
chr2.2 mRNA 2868631 2870754 2868631 ID=MS.gene36408.t1;Parent=MS.gene36408
chr2.2 exon 2870675 2870754 2870675 ID=MS.gene36408.t1.exon1;Parent=MS.gene36408.t1
chr2.2 CDS 2870675 2870754 2870675 ID=cds.MS.gene36408.t1;Parent=MS.gene36408.t1
chr2.2 exon 2870084 2870140 2870084 ID=MS.gene36408.t1.exon2;Parent=MS.gene36408.t1
chr2.2 CDS 2870084 2870140 2870084 ID=cds.MS.gene36408.t1;Parent=MS.gene36408.t1
chr2.2 exon 2869957 2869981 2869957 ID=MS.gene36408.t1.exon3;Parent=MS.gene36408.t1
chr2.2 CDS 2869957 2869981 2869957 ID=cds.MS.gene36408.t1;Parent=MS.gene36408.t1
chr2.2 exon 2869426 2869644 2869426 ID=MS.gene36408.t1.exon4;Parent=MS.gene36408.t1
chr2.2 CDS 2869426 2869644 2869426 ID=cds.MS.gene36408.t1;Parent=MS.gene36408.t1
chr2.2 exon 2869204 2869287 2869204 ID=MS.gene36408.t1.exon5;Parent=MS.gene36408.t1
chr2.2 CDS 2869204 2869287 2869204 ID=cds.MS.gene36408.t1;Parent=MS.gene36408.t1
chr2.2 exon 2868631 2868771 2868631 ID=MS.gene36408.t1.exon6;Parent=MS.gene36408.t1
chr2.2 CDS 2868631 2868771 2868631 ID=cds.MS.gene36408.t1;Parent=MS.gene36408.t1
Gene Sequence

>MS.gene36408

ATGTATCTTCAGGCATATTATGGGCAAAGAGTCAACATTCCACCACCATATTTCAACTCAGCTGCTGCTCCTGGTCATCTGTGATGTTCATAATTACTTTGTTATACCATTGATATTTCTGTGTATTATACTGGTGAATTTTTACTGTTATCACTAATTAATTTCTTCGTTCTTTGAAGTACTTAATGTACCAAACCTTTGTGGTTGAATGTTTATATATGTACTTATGAATTATATTCAAGGAATTCCATCTTCACCTGCTGTAAGTTTTGATTTTTTCTTAGATCACTTCAAAATTCCGAAGCTTTACATCATCCCCTGAATACCGTAAATAATTATGATGGATTTGACCTGGGGGAAACTACGCAGGCTGGAACTCCTACAAGCATAGAGACACCAACTAAATCATCTGGAAACACTGATCAGGGTTTAATCAAAAAATTGAAAGTGCTGAGCTAGCGTGGAGAGGAAAACCGGCTATCACTGAGGTTTGTTCTATACGATGATTACCAGAATCAACTGCACTTCCTATCTTCCTTGCTCTACGAGTTTGTTGCTCTGTTAGGTTCATGTGGATAACTGAATAATTTTATGATGATATATCATATCAACAGTGTGGATACTGAGGGCTCCAGACTTCCAGTAATGGAAGCGATGGCAACACTACAGGGGTGAGAAATTTCTGGCTATTATAATTTTTTCCCGGTTATGTACTTTATTTATAATGACCCGAAAAATTGAAGCATGAAAATGTTTGCCAATGTTATAAACAGACCAATGGAACACCAACAACCACTGGTATGATAAACAATACTAGTTATTCTGGATTACAAATATACTTCTGGTGTCATGTCATGTCATGAATGACTGTAACCGTGGTGTCAACAATTCATTGAGTATGATCTTGATAAATAAATACTATCCAATTGTTAATGCATGATAAGGTGAAGCTACCATGCTTTTAAATTTCTGATTAATTTGAATCATTTGATACCAAGACTGGCACCTCGTTTGAGAGTTAATTACATTCAATTTTTTTGGTTTCATAAGGATGCATTTATCGATAAAACGTTATCTACTAGTAACTTAATGTACTAATTACTTGAACAGATGGAGAAGGGAAAACTGAGATGCAAGATAATCAAGTTTCCAAAGAGACTGCCGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAATGGTTGGACCTGTACTTTCTTCAGGTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGTTCCACAGCCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGGTACTGTAAGATTTTAGTTCTACTAATGTTTCATTTCTCACATCTAGTACATTAGAGATTCTTTTGAATCACACAACAATAATGCAGCATCCTTGTCTTTTACTGACACTAAAGTAATTCTTGGTCTGAATTCCTTAGAATGAGAGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGCTTAGGAAGCAAGTATGATTTGATGCAAATTTGCAATTTTTGTTTCACGTGTTCGTGTTTTTTTATTTGTCACGTGTTTTTATGGGTTTGTTTGGATTGGCTAATTTGAGCTTATCAACTAACATAAACACATATGAGACTGTTCGGAAGAGCATATAGAACCAGCGTATGGCATGGCCATAAGCTCTTTTCAGCTTATTTCCATAAGCTCTTCAGGATAGTTTATGAAAACAACTTATAGAATATGGAAACAATTTGACTTTAATTTATCTTTTGCTATAGTAGTTTATACATAAACACTTATATGATGAACATTTATGCTACAAGCACTCAGTTAAGTTGTTTATCCAAACACGGCCCTGATGCATGTACATGTAGCCCTTGAAAGAAAATGTTATCACAAAAGGAAAGTTCATGACAAACGTTCTTATCTCCTCTATACAGGCTGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCCGAGAATTTGGTGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCTGAGAAGCTGAAGATTGAAAATGCTACATTAAAGATAATGCACACATAA
Protein sequence

>MS.gene36408.t1

MYLQAYYGQRVNIPPPYFNSAAAPGHLVDTEGSRLPVMEAMATLQGPMEHQQPLMEKGKLRCKIIKFPKRLPLPKRRCQLSQPVLQKMVGPVLSSGMTTSLELRNPSPISTSVPQPCGVLPPEAWMQNESELKRERRKQSNRESARRSRLRLRKQAEAEELARRVDALTAENLVLKSEMNELAENSEKLKIENATLKIMHT