Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36475.t1 | XP_013457345.1 | 97.4 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 6.60E-69 | 270 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36475.t1 | O64702 | 53.3 | 152 | 69 | 2 | 1 | 151 | 1 | 151 | 3.6e-31 | 136.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36475.t1 | I3SF63 | 97.4 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 4.8e-69 | 270.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene36475.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36475.t1 | MTR_4g094622 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.85e-104 | 295 |
| MS.gene36475.t1 | MTR_8g073345 | 46.067 | 89 | 48 | 0 | 59 | 147 | 33 | 121 | 1.05e-23 | 90.5 |
| MS.gene36475.t1 | MTR_8g073345 | 46.067 | 89 | 48 | 0 | 59 | 147 | 33 | 121 | 1.62e-23 | 89.7 |
| MS.gene36475.t1 | MTR_3g115580 | 47.674 | 86 | 45 | 0 | 53 | 138 | 35 | 120 | 3.08e-23 | 89.4 |
| MS.gene36475.t1 | MTR_7g068280 | 51.316 | 76 | 37 | 0 | 59 | 134 | 47 | 122 | 1.88e-22 | 87.8 |
| MS.gene36475.t1 | MTR_1g115220 | 48.315 | 89 | 45 | 1 | 59 | 146 | 98 | 186 | 1.09e-21 | 87.0 |
| MS.gene36475.t1 | MTR_7g082820 | 44.444 | 81 | 44 | 1 | 55 | 135 | 5 | 84 | 2.32e-17 | 73.9 |
| MS.gene36475.t1 | MTR_5g024180 | 38.272 | 81 | 50 | 0 | 52 | 132 | 25 | 105 | 4.54e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36475.t1 | AT2G34450 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 4.92e-51 | 160 |
| MS.gene36475.t1 | AT2G34450 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 4.92e-51 | 160 |
| MS.gene36475.t1 | AT2G34450 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 4.92e-51 | 160 |
| MS.gene36475.t1 | AT2G34450 | 55.556 | 153 | 65 | 3 | 1 | 151 | 1 | 152 | 3.30e-49 | 155 |
| MS.gene36475.t1 | AT2G17560 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.43e-24 | 90.5 |
| MS.gene36475.t1 | AT2G17560 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.97e-24 | 90.5 |
| MS.gene36475.t1 | AT2G17560 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.97e-24 | 90.5 |
| MS.gene36475.t1 | AT3G51880 | 44.554 | 101 | 56 | 0 | 50 | 150 | 40 | 140 | 1.60e-23 | 90.5 |
| MS.gene36475.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.06e-23 | 90.5 |
| MS.gene36475.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.06e-23 | 90.5 |
| MS.gene36475.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.06e-23 | 90.5 |
| MS.gene36475.t1 | AT3G51880 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.26e-23 | 90.9 |
| MS.gene36475.t1 | AT1G20693 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.03e-22 | 86.3 |
| MS.gene36475.t1 | AT1G20693 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.16e-22 | 86.3 |
| MS.gene36475.t1 | AT4G35570 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.58e-22 | 85.5 |
| MS.gene36475.t1 | AT4G35570 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.58e-22 | 85.5 |
| MS.gene36475.t1 | AT1G20693 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 1.19e-21 | 85.1 |
| MS.gene36475.t1 | AT1G20696 | 45.556 | 90 | 47 | 1 | 59 | 148 | 31 | 118 | 7.78e-21 | 82.8 |
| MS.gene36475.t1 | AT1G20696 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 4.96e-18 | 75.9 |
| MS.gene36475.t1 | AT1G20696 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 5.22e-18 | 75.5 |
| MS.gene36475.t1 | AT5G23420 | 47.059 | 68 | 35 | 1 | 60 | 127 | 112 | 178 | 6.33e-13 | 64.3 |
| MS.gene36475.t1 | AT1G20696 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 4.62e-12 | 59.3 |
| MS.gene36475.t1 | AT1G20696 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 1.25e-11 | 58.2 |
Find 21 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATTCTGCACGTTTCT+CGG | 0.263566 | 4.1:+18476555 | None:intergenic |
| TCTTCTTCGGCCTCCACCTC+CGG | 0.314496 | 4.1:-18479309 | MS.gene36475:CDS |
| GACAGAGTATAACAAGAAAA+TGG | 0.358050 | 4.1:-18476524 | MS.gene36475:intron |
| TTAAGTCTCTTGACTTAGTC+TGG | 0.383960 | 4.1:+18478687 | None:intergenic |
| TCAAAAGAACGCTTCTTCTT+CGG | 0.408803 | 4.1:-18479322 | MS.gene36475:CDS |
| TCACGCATTGACTTAACATC+TGG | 0.420177 | 4.1:+18477904 | None:intergenic |
| CTTCTTCGGCCTCCACCTCC+GGG | 0.468963 | 4.1:-18479308 | MS.gene36475:intron |
| AGTGAAAGGGTACCCGGAGG+TGG | 0.487598 | 4.1:+18479296 | None:intergenic |
| GAAAGGGTACCCGGAGGTGG+AGG | 0.521126 | 4.1:+18479299 | None:intergenic |
| GCAAGGCATGTGGAGAGAAG+TGG | 0.571530 | 4.1:-18477607 | MS.gene36475:CDS |
| CGTGTTCATACAGATTGGCA+AGG | 0.572075 | 4.1:-18477624 | MS.gene36475:intron |
| AAGAAGTAGAAGAAAGCAGT+GGG | 0.576065 | 4.1:+18478605 | None:intergenic |
| GTTGGCGATCAAATCGAATG+AGG | 0.587280 | 4.1:-18478729 | MS.gene36475:CDS |
| GAAGTAGAAGAAAGCAGTGG+GGG | 0.593069 | 4.1:+18478607 | None:intergenic |
| ATACAGATTGGCAAGGCATG+TGG | 0.602187 | 4.1:-18477617 | MS.gene36475:intron |
| TCTGATGCTTTGCAGGAAAG+CGG | 0.606454 | 4.1:-18476429 | MS.gene36475:intron |
| TGAATATGAAGAAACTGATG+AGG | 0.612778 | 4.1:-18476406 | MS.gene36475:CDS |
| TTGGCGATCAAATCGAATGA+GGG | 0.633911 | 4.1:-18478728 | MS.gene36475:CDS |
| CAAGAAGTAGAAGAAAGCAG+TGG | 0.644048 | 4.1:+18478604 | None:intergenic |
| AAGTAGAAGAAAGCAGTGGG+GGG | 0.691336 | 4.1:+18478608 | None:intergenic |
| AGAAGTAGAAGAAAGCAGTG+GGG | 0.730489 | 4.1:+18478606 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAAGTTTCAAAAAT+TGG | - | chr4.1:18478262-18478281 | MS.gene36475:intron | 10.0% |
| !! | ATAAATTATGTTTCAAAAAT+TGG | - | chr4.1:18478337-18478356 | MS.gene36475:intron | 10.0% |
| !! | TAAAAAAAATTAAAGTAAAG+GGG | - | chr4.1:18478857-18478876 | MS.gene36475:intron | 10.0% |
| !! | TTGTTATATTTGAAAAAAAT+TGG | - | chr4.1:18478494-18478513 | MS.gene36475:intron | 10.0% |
| !! | TCATTCAAGTAAAAAATTAT+TGG | - | chr4.1:18476745-18476764 | MS.gene36475:intron | 15.0% |
| !!! | CGATTTTTATGTTTAATTAT+TGG | - | chr4.1:18478699-18478718 | MS.gene36475:CDS | 15.0% |
| !! | AAAATTGAATAAAATGATGG+CGG | - | chr4.1:18476838-18476857 | MS.gene36475:intron | 20.0% |
| !! | AACATCATAAATAAAGAACA+AGG | + | chr4.1:18477178-18477197 | None:intergenic | 20.0% |
| !! | AATAAGCAGAAAACAATTTA+TGG | + | chr4.1:18476561-18476580 | None:intergenic | 20.0% |
| !! | ACTACTATTTACAGTATATT+TGG | - | chr4.1:18477653-18477672 | MS.gene36475:intron | 20.0% |
| !! | AGATCAAATTGAACATAATA+TGG | + | chr4.1:18479074-18479093 | None:intergenic | 20.0% |
| !! | TCTCAAAAACATAAAATAAC+TGG | + | chr4.1:18478009-18478028 | None:intergenic | 20.0% |
| !! | TGTAAAAATTAGAAGATTCA+GGG | - | chr4.1:18476719-18476738 | MS.gene36475:intron | 20.0% |
| !! | TTATGTTTAATTATTGGTGT+TGG | - | chr4.1:18478705-18478724 | MS.gene36475:CDS | 20.0% |
| !! | TTGTAAAAATTAGAAGATTC+AGG | - | chr4.1:18476718-18476737 | MS.gene36475:intron | 20.0% |
| !! | TTTGAAAAAAATTGGAAAGT+TGG | - | chr4.1:18478502-18478521 | MS.gene36475:intron | 20.0% |
| !!! | AAACTAGTTCTATATTGATT+TGG | + | chr4.1:18479003-18479022 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTTAGACCTAT+AGG | - | chr4.1:18476674-18476693 | MS.gene36475:intron | 20.0% |
| !!! | AATTGATTTTTAGACCTATA+GGG | - | chr4.1:18476675-18476694 | MS.gene36475:intron | 20.0% |
| !!! | AATTTAGAACAAATGGAAAA+TGG | + | chr4.1:18477240-18477259 | None:intergenic | 20.0% |
| !!! | ACAATTGCTTCTTTTTTATA+TGG | - | chr4.1:18477717-18477736 | MS.gene36475:intron | 20.0% |
| !!! | ATAACTGGCAATTTTTAAAA+TGG | + | chr4.1:18477994-18478013 | None:intergenic | 20.0% |
| !!! | CCATAAAAATTTAGAACAAA+TGG | + | chr4.1:18477247-18477266 | None:intergenic | 20.0% |
| !!! | CCATCATTTTATTCAATTTT+GGG | + | chr4.1:18476838-18476857 | None:intergenic | 20.0% |
| !!! | CCATTTGTTCTAAATTTTTA+TGG | - | chr4.1:18477244-18477263 | MS.gene36475:intron | 20.0% |
| ! | AATAAGACATAGTAGAAACA+AGG | + | chr4.1:18477616-18477635 | None:intergenic | 25.0% |
| ! | ATCATAAATAAAGAACAAGG+AGG | + | chr4.1:18477175-18477194 | None:intergenic | 25.0% |
| ! | ATTATAAAGACACGTAAACT+GGG | + | chr4.1:18478821-18478840 | None:intergenic | 25.0% |
| ! | CCCAAAATTGAATAAAATGA+TGG | - | chr4.1:18476835-18476854 | MS.gene36475:intron | 25.0% |
| ! | CTAACTTTCTTCTATAGTTA+CGG | - | chr4.1:18476511-18476530 | MS.gene36475:intron | 25.0% |
| ! | TAACAAAAATTGTATCTGAC+AGG | - | chr4.1:18479132-18479151 | MS.gene36475:intron | 25.0% |
| ! | TAGACGAAATATTAATACGA+CGG | + | chr4.1:18477873-18477892 | None:intergenic | 25.0% |
| ! | TAGTAATGAACCAGTAATTA+TGG | + | chr4.1:18477341-18477360 | None:intergenic | 25.0% |
| !! | AATTCAGGTTAAATATGCAA+GGG | + | chr4.1:18478196-18478215 | None:intergenic | 25.0% |
| !! | GAATTTTGTCAAAACTGTTT+AGG | - | chr4.1:18478366-18478385 | MS.gene36475:intron | 25.0% |
| !! | GCCATCATTTTATTCAATTT+TGG | + | chr4.1:18476839-18476858 | None:intergenic | 25.0% |
| !! | TAACCTGAATTGTGTTATTA+TGG | - | chr4.1:18478205-18478224 | MS.gene36475:intron | 25.0% |
| !!! | AACTGTTTAGGTTTTTAATG+TGG | - | chr4.1:18478378-18478397 | MS.gene36475:intron | 25.0% |
| !!! | AAGTTCTTTTTCATTCTGAA+GGG | - | chr4.1:18477778-18477797 | MS.gene36475:intron | 25.0% |
| !!! | ATCAGTTTTTTGACTCATTT+AGG | - | chr4.1:18478657-18478676 | MS.gene36475:CDS | 25.0% |
| !!! | TCAGTTTTTTGACTCATTTA+GGG | - | chr4.1:18478658-18478677 | MS.gene36475:CDS | 25.0% |
| !!! | TTATTCAATTTTGGGTCTAA+GGG | + | chr4.1:18476830-18476849 | None:intergenic | 25.0% |
| !!! | TTTAATTTTCAGAAGCTCTT+CGG | - | chr4.1:18476648-18476667 | MS.gene36475:intron | 25.0% |
| !!! | TTTATTCAATTTTGGGTCTA+AGG | + | chr4.1:18476831-18476850 | None:intergenic | 25.0% |
| AAAACATGTTTGAAGATGAG+TGG | + | chr4.1:18477549-18477568 | None:intergenic | 30.0% | |
| AAAAGTAGCACCATAATTAC+TGG | - | chr4.1:18477328-18477347 | MS.gene36475:intron | 30.0% | |
| ATAGTAGTATGATTGAGCAA+AGG | + | chr4.1:18477641-18477660 | None:intergenic | 30.0% | |
| ATTAACACGAGTACATTTGT+AGG | - | chr4.1:18478732-18478751 | MS.gene36475:CDS | 30.0% | |
| CAACCATAATAACACAATTC+AGG | + | chr4.1:18478211-18478230 | None:intergenic | 30.0% | |
| GACAGAGTATAACAAGAAAA+TGG | - | chr4.1:18479213-18479232 | MS.gene36475:intron | 30.0% | |
| GATTATAAAGACACGTAAAC+TGG | + | chr4.1:18478822-18478841 | None:intergenic | 30.0% | |
| GTCAAAATTACTGTGTTTAC+TGG | - | chr4.1:18477755-18477774 | MS.gene36475:intron | 30.0% | |
| TAACCTATCTGTCATATTCA+TGG | - | chr4.1:18479236-18479255 | MS.gene36475:intron | 30.0% | |
| TAGACCTATAGGGATATTAA+TGG | - | chr4.1:18476685-18476704 | MS.gene36475:intron | 30.0% | |
| TGAATATGAAGAAACTGATG+AGG | - | chr4.1:18479331-18479350 | MS.gene36475:CDS | 30.0% | |
| TGTAAAACAAAGTTGCTTCA+GGG | + | chr4.1:18477919-18477938 | None:intergenic | 30.0% | |
| TTACAGTATATTTGGCATTG+TGG | - | chr4.1:18477661-18477680 | MS.gene36475:intron | 30.0% | |
| TTGTAAAACAAAGTTGCTTC+AGG | + | chr4.1:18477920-18477939 | None:intergenic | 30.0% | |
| ! | AACAATGATGATGATGATGA+TGG | + | chr4.1:18478044-18478063 | None:intergenic | 30.0% |
| ! | ATGTTTCAAAAATTGGCTCA+GGG | - | chr4.1:18478344-18478363 | MS.gene36475:intron | 30.0% |
| ! | ATTTGGAATAAATAGCAGCA+CGG | + | chr4.1:18478986-18479005 | None:intergenic | 30.0% |
| ! | CAATTCAGGTTAAATATGCA+AGG | + | chr4.1:18478197-18478216 | None:intergenic | 30.0% |
| ! | TATGTTTCAAAAATTGGCTC+AGG | - | chr4.1:18478343-18478362 | MS.gene36475:intron | 30.0% |
| ! | TTAATTTTCAGAAGCTCTTC+GGG | - | chr4.1:18476649-18476668 | MS.gene36475:intron | 30.0% |
| !! | GAAGTTCTTTTTCATTCTGA+AGG | - | chr4.1:18477777-18477796 | MS.gene36475:intron | 30.0% |
| !! | TGGATGGTATTTTAGAAAAC+TGG | + | chr4.1:18478890-18478909 | None:intergenic | 30.0% |
| !! | TTCTAAAATACCATCCATTG+TGG | - | chr4.1:18478893-18478912 | MS.gene36475:intron | 30.0% |
| !!! | GTATTTTACGGATTTTGACT+TGG | - | chr4.1:18477447-18477466 | MS.gene36475:intron | 30.0% |
| AAGAAGTAGAAGAAAGCAGT+GGG | + | chr4.1:18477135-18477154 | None:intergenic | 35.0% | |
| AAGAAGTCATGATCAAGACA+TGG | + | chr4.1:18478425-18478444 | None:intergenic | 35.0% | |
| ACAAGAGTTTAGCTGCATTA+AGG | - | chr4.1:18477284-18477303 | MS.gene36475:intron | 35.0% | |
| ATCAAATTCTGCACGTTTCT+CGG | + | chr4.1:18479185-18479204 | None:intergenic | 35.0% | |
| CACTCCATTAATATCCCTAT+AGG | + | chr4.1:18476692-18476711 | None:intergenic | 35.0% | |
| CCATTGTCAGGAATTTAAAC+AGG | + | chr4.1:18479039-18479058 | None:intergenic | 35.0% | |
| CCTGTTTAAATTCCTGACAA+TGG | - | chr4.1:18479036-18479055 | MS.gene36475:intron | 35.0% | |
| GACATAGTAGAAACAAGGAA+AGG | + | chr4.1:18477611-18477630 | None:intergenic | 35.0% | |
| GCTAATGGCTAATCAACAAA+TGG | + | chr4.1:18477495-18477514 | None:intergenic | 35.0% | |
| GTAAAACAAAGTTGCTTCAG+GGG | + | chr4.1:18477918-18477937 | None:intergenic | 35.0% | |
| TAGCCATGAATATGACAGAT+AGG | + | chr4.1:18479242-18479261 | None:intergenic | 35.0% | |
| TCAAAAGAACGCTTCTTCTT+CGG | - | chr4.1:18476415-18476434 | MS.gene36475:CDS | 35.0% | |
| TCAATTTGATCTGAGCAAGA+AGG | - | chr4.1:18479082-18479101 | MS.gene36475:intron | 35.0% | |
| TGGAAAGTTGGAATTCATTG+CGG | - | chr4.1:18478514-18478533 | MS.gene36475:intron | 35.0% | |
| TTAAGTCTCTTGACTTAGTC+TGG | + | chr4.1:18477053-18477072 | None:intergenic | 35.0% | |
| TTATGACCAATGCGCAATTT+AGG | + | chr4.1:18476775-18476794 | None:intergenic | 35.0% | |
| TTGTCAGTTGTGATGTTTGA+CGG | - | chr4.1:18478296-18478315 | MS.gene36475:intron | 35.0% | |
| TTTCTTCTATAGTTACGGTC+TGG | - | chr4.1:18476516-18476535 | MS.gene36475:intron | 35.0% | |
| ! | AATGCTGCATTGAGTTTTTC+AGG | - | chr4.1:18476977-18476996 | MS.gene36475:intron | 35.0% |
| ! | CTAGTGAACTGACTCTTATT+TGG | - | chr4.1:18479259-18479278 | MS.gene36475:intron | 35.0% |
| ! | GCGCATTGGTCATAATAAAA+AGG | - | chr4.1:18476780-18476799 | MS.gene36475:intron | 35.0% |
| ! | GTGGAAAACAATGACTTTTG+AGG | - | chr4.1:18478149-18478168 | MS.gene36475:intron | 35.0% |
| ! | TATACTATCGCGTAAGTTGA+TGG | - | chr4.1:18477414-18477433 | MS.gene36475:intron | 35.0% |
| !! | ATACTATCGCGTAAGTTGAT+GGG | - | chr4.1:18477415-18477434 | MS.gene36475:intron | 35.0% |
| !! | CTTATTTTCACAAGCTCTTC+AGG | - | chr4.1:18476575-18476594 | MS.gene36475:CDS | 35.0% |
| !! | TTCTTTTTCATTCTGAAGGG+AGG | - | chr4.1:18477781-18477800 | MS.gene36475:intron | 35.0% |
| !! | TTTGTTTTCTGATGCTTTGC+AGG | - | chr4.1:18479301-18479320 | MS.gene36475:intron | 35.0% |
| !!! | GTTCTTTTTTTGCACTGCTT+TGG | + | chr4.1:18477076-18477095 | None:intergenic | 35.0% |
| !!! | GTTTTTCAGGAAACTAGTGT+TGG | - | chr4.1:18476990-18477009 | MS.gene36475:intron | 35.0% |
| !!! | TTTTACGGATTTTGACTTGG+AGG | - | chr4.1:18477450-18477469 | MS.gene36475:intron | 35.0% |
| AACATAGAGCTCAACCAAAG+CGG | + | chr4.1:18479113-18479132 | None:intergenic | 40.0% | |
| ACGCGATAGTATAACTCCAA+AGG | + | chr4.1:18477407-18477426 | None:intergenic | 40.0% | |
| ACTGATCTGTGTGTTTCCTT+TGG | - | chr4.1:18477388-18477407 | MS.gene36475:intron | 40.0% | |
| AGAAGTAGAAGAAAGCAGTG+GGG | + | chr4.1:18477134-18477153 | None:intergenic | 40.0% | |
| AGCAGAACTGAAGATCACTT+TGG | - | chr4.1:18478539-18478558 | MS.gene36475:intron | 40.0% | |
| AGGAGAGTAGAGAAAGTGAA+AGG | + | chr4.1:18476458-18476477 | None:intergenic | 40.0% | |
| AGGTAAGTTTCCACAATGGA+TGG | + | chr4.1:18478906-18478925 | None:intergenic | 40.0% | |
| ATACTTGACACTCCATTGTC+AGG | + | chr4.1:18479051-18479070 | None:intergenic | 40.0% | |
| ATCCATTGTGGAAACTTACC+TGG | - | chr4.1:18478905-18478924 | MS.gene36475:intron | 40.0% | |
| CAAGAAGTAGAAGAAAGCAG+TGG | + | chr4.1:18477136-18477155 | None:intergenic | 40.0% | |
| CAATCTGTATGAACACGGAA+AGG | + | chr4.1:18478110-18478129 | None:intergenic | 40.0% | |
| CCAACAATGCAATTATGCCT+TGG | - | chr4.1:18476804-18476823 | MS.gene36475:intron | 40.0% | |
| CCAAGGCATAATTGCATTGT+TGG | + | chr4.1:18476807-18476826 | None:intergenic | 40.0% | |
| CTTGCCAATCTGTATGAACA+CGG | + | chr4.1:18478115-18478134 | None:intergenic | 40.0% | |
| CTTTCCGTGTTCATACAGAT+TGG | - | chr4.1:18478108-18478127 | MS.gene36475:intron | 40.0% | |
| GGAGAGTAGAGAAAGTGAAA+GGG | + | chr4.1:18476457-18476476 | None:intergenic | 40.0% | |
| TAGCTTCAGGTGTTAGTAGT+GGG | - | chr4.1:18476897-18476916 | MS.gene36475:intron | 40.0% | |
| TCCATTGTGGAAACTTACCT+GGG | - | chr4.1:18478906-18478925 | MS.gene36475:intron | 40.0% | |
| TTGGCGATCAAATCGAATGA+GGG | - | chr4.1:18477009-18477028 | MS.gene36475:intron | 40.0% | |
| ! | ACTCTCCTTTTCGTTCACAA+GGG | - | chr4.1:18476470-18476489 | MS.gene36475:intron | 40.0% |
| ! | GGGGGTTCTGTTGTATTTTA+CGG | - | chr4.1:18477435-18477454 | MS.gene36475:intron | 40.0% |
| ! | TACTCTCCTTTTCGTTCACA+AGG | - | chr4.1:18476469-18476488 | MS.gene36475:intron | 40.0% |
| !! | CATTCTGAAGGGAGGATTTT+CGG | - | chr4.1:18477789-18477808 | MS.gene36475:intron | 40.0% |
| !! | TACTATCGCGTAAGTTGATG+GGG | - | chr4.1:18477416-18477435 | MS.gene36475:intron | 40.0% |
| !! | TCACGCATTGACTTAACATC+TGG | + | chr4.1:18477836-18477855 | None:intergenic | 40.0% |
| AAGTAGAAGAAAGCAGTGGG+GGG | + | chr4.1:18477132-18477151 | None:intergenic | 45.0% | |
| ACTTGAGGGGGTAATGCTAA+TGG | + | chr4.1:18477510-18477529 | None:intergenic | 45.0% | |
| AGCTTCAGGTGTTAGTAGTG+GGG | - | chr4.1:18476898-18476917 | MS.gene36475:intron | 45.0% | |
| ATACAGATTGGCAAGGCATG+TGG | - | chr4.1:18478120-18478139 | MS.gene36475:intron | 45.0% | |
| CCTTTCCCTTGTGAACGAAA+AGG | + | chr4.1:18476478-18476497 | None:intergenic | 45.0% | |
| CGTGTTCATACAGATTGGCA+AGG | - | chr4.1:18478113-18478132 | MS.gene36475:intron | 45.0% | |
| CTACTAACACCTGAAGCTAG+AGG | + | chr4.1:18476896-18476915 | None:intergenic | 45.0% | |
| CTAGCTTCAGGTGTTAGTAG+TGG | - | chr4.1:18476896-18476915 | MS.gene36475:intron | 45.0% | |
| GAAGTAGAAGAAAGCAGTGG+GGG | + | chr4.1:18477133-18477152 | None:intergenic | 45.0% | |
| GGAAGACCTAAATTGCGCAT+TGG | - | chr4.1:18476766-18476785 | MS.gene36475:intron | 45.0% | |
| GTCTCAGCTCTTGAACTTGA+GGG | + | chr4.1:18477524-18477543 | None:intergenic | 45.0% | |
| GTTGGCGATCAAATCGAATG+AGG | - | chr4.1:18477008-18477027 | MS.gene36475:intron | 45.0% | |
| TCCCAGGTAAGTTTCCACAA+TGG | + | chr4.1:18478910-18478929 | None:intergenic | 45.0% | |
| TCTCAGCTCTTGAACTTGAG+GGG | + | chr4.1:18477523-18477542 | None:intergenic | 45.0% | |
| TCTGATGCTTTGCAGGAAAG+CGG | - | chr4.1:18479308-18479327 | MS.gene36475:intron | 45.0% | |
| TCTGTATGAACACGGAAAGG+AGG | + | chr4.1:18478107-18478126 | None:intergenic | 45.0% | |
| TGGAAACTTACCTGGGACTA+AGG | - | chr4.1:18478913-18478932 | MS.gene36475:intron | 45.0% | |
| TGTCTCAGCTCTTGAACTTG+AGG | + | chr4.1:18477525-18477544 | None:intergenic | 45.0% | |
| TGTGAGTTTCAACCGTGTCT+AGG | - | chr4.1:18476864-18476883 | MS.gene36475:intron | 45.0% | |
| ! | CCTTTTCGTTCACAAGGGAA+AGG | - | chr4.1:18476475-18476494 | MS.gene36475:intron | 45.0% |
| ! | TAGAGGTGTAGACCTAGACA+CGG | + | chr4.1:18476879-18476898 | None:intergenic | 45.0% |
| !! | AATTTTGGGTCTAAGGGCCA+AGG | + | chr4.1:18476824-18476843 | None:intergenic | 45.0% |
| !! | ACTATCGCGTAAGTTGATGG+GGG | - | chr4.1:18477417-18477436 | MS.gene36475:intron | 45.0% |
| !! | AGAGAAAGTGAAAGGGTACC+CGG | + | chr4.1:18476450-18476469 | None:intergenic | 45.0% |
| !! | AGCGTTCTTTTGAGAGTGAG+AGG | + | chr4.1:18476408-18476427 | None:intergenic | 45.0% |
| !!! | CGGATTTTGACTTGGAGGAA+TGG | - | chr4.1:18477455-18477474 | MS.gene36475:intron | 45.0% |
| !! | AATAAAAAAAATTAAAGTAA+AGG | - | chr4.1:18478855-18478874 | MS.gene36475:intron | 5.0% |
| !! | ATAAAAAAAATTAAAGTAAA+GGG | - | chr4.1:18478856-18478875 | MS.gene36475:intron | 5.0% |
| AAAGCAGTGGGGGGTTTCTT+CGG | + | chr4.1:18477123-18477142 | None:intergenic | 50.0% | |
| AACTGATGATCATGCCAGCC+TGG | + | chr4.1:18478644-18478663 | None:intergenic | 50.0% | |
| AGCTTCTTCTCGATAGCAGC+AGG | + | chr4.1:18478949-18478968 | None:intergenic | 50.0% | |
| CACGTAAACTGGGTGCTCTA+AGG | + | chr4.1:18478811-18478830 | None:intergenic | 50.0% | |
| CTCAGCTCTTGAACTTGAGG+GGG | + | chr4.1:18477522-18477541 | None:intergenic | 50.0% | |
| GCAAGAAGGAAACACCGCTT+TGG | - | chr4.1:18479096-18479115 | MS.gene36475:intron | 50.0% | |
| TCTCCTCTGGTTGGAATTCC+AGG | - | chr4.1:18478623-18478642 | MS.gene36475:CDS | 50.0% | |
| ! | AGGTCTACACCTCTAGCTTC+AGG | - | chr4.1:18476884-18476903 | MS.gene36475:intron | 50.0% |
| AGTCGCAGAACTGTCTCCTC+TGG | - | chr4.1:18478610-18478629 | MS.gene36475:CDS | 55.0% | |
| CAGCCTGGAATTCCAACCAG+AGG | + | chr4.1:18478629-18478648 | None:intergenic | 55.0% | |
| CTCTGGTTGGAATTCCAGGC+TGG | - | chr4.1:18478627-18478646 | MS.gene36475:CDS | 55.0% | |
| CTTTCACGTGCCTTAGTCCC+AGG | + | chr4.1:18478926-18478945 | None:intergenic | 55.0% | |
| GACTTGGAGGAATGGTGCAG+AGG | - | chr4.1:18477463-18477482 | MS.gene36475:intron | 55.0% | |
| GCAAGGCATGTGGAGAGAAG+TGG | - | chr4.1:18478130-18478149 | MS.gene36475:intron | 55.0% | |
| GCAGAACTGTCTCCTCTGGT+TGG | - | chr4.1:18478614-18478633 | MS.gene36475:CDS | 55.0% | |
| TTGGAGGAATGGTGCAGAGG+AGG | - | chr4.1:18477466-18477485 | MS.gene36475:intron | 55.0% | |
| !! | GAAAGTGAAAGGGTACCCGG+AGG | + | chr4.1:18476447-18476466 | None:intergenic | 55.0% |
| TCTTCTTCGGCCTCCACCTC+CGG | - | chr4.1:18476428-18476447 | MS.gene36475:intron | 60.0% | |
| !! | AGTGAAAGGGTACCCGGAGG+TGG | + | chr4.1:18476444-18476463 | None:intergenic | 60.0% |
| CTTCTTCGGCCTCCACCTCC+GGG | - | chr4.1:18476429-18476448 | MS.gene36475:intron | 65.0% | |
| !! | GAAAGGGTACCCGGAGGTGG+AGG | + | chr4.1:18476441-18476460 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18476386 | 18479373 | 18476386 | ID=MS.gene36475 |
| chr4.1 | mRNA | 18476386 | 18479373 | 18476386 | ID=MS.gene36475.t1;Parent=MS.gene36475 |
| chr4.1 | exon | 18479309 | 18479373 | 18479309 | ID=MS.gene36475.t1.exon1;Parent=MS.gene36475.t1 |
| chr4.1 | CDS | 18479309 | 18479373 | 18479309 | ID=cds.MS.gene36475.t1;Parent=MS.gene36475.t1 |
| chr4.1 | exon | 18478605 | 18478760 | 18478605 | ID=MS.gene36475.t1.exon2;Parent=MS.gene36475.t1 |
| chr4.1 | CDS | 18478605 | 18478760 | 18478605 | ID=cds.MS.gene36475.t1;Parent=MS.gene36475.t1 |
| chr4.1 | exon | 18477903 | 18477960 | 18477903 | ID=MS.gene36475.t1.exon3;Parent=MS.gene36475.t1 |
| chr4.1 | CDS | 18477903 | 18477960 | 18477903 | ID=cds.MS.gene36475.t1;Parent=MS.gene36475.t1 |
| chr4.1 | exon | 18477589 | 18477633 | 18477589 | ID=MS.gene36475.t1.exon4;Parent=MS.gene36475.t1 |
| chr4.1 | CDS | 18477589 | 18477633 | 18477589 | ID=cds.MS.gene36475.t1;Parent=MS.gene36475.t1 |
| chr4.1 | exon | 18476525 | 18476605 | 18476525 | ID=MS.gene36475.t1.exon5;Parent=MS.gene36475.t1 |
| chr4.1 | CDS | 18476525 | 18476605 | 18476525 | ID=cds.MS.gene36475.t1;Parent=MS.gene36475.t1 |
| chr4.1 | exon | 18476386 | 18476436 | 18476386 | ID=MS.gene36475.t1.exon6;Parent=MS.gene36475.t1 |
| chr4.1 | CDS | 18476386 | 18476436 | 18476386 | ID=cds.MS.gene36475.t1;Parent=MS.gene36475.t1 |
| Gene Sequence |
| Protein sequence |
