AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36481

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36481.t1 MTR_4g094638 89.375 160 17 0 1 160 8 167 2.33e-88 256
MS.gene36481.t1 MTR_4g094632 68.590 156 43 3 1 156 8 157 2.55e-67 202
MS.gene36481.t1 MTR_8g079502 39.024 164 80 7 1 151 8 164 5.63e-26 97.8
MS.gene36481.t1 MTR_1g047550 36.646 161 88 5 1 151 8 164 1.27e-25 96.7
MS.gene36481.t1 MTR_4g131030 33.523 176 90 4 1 151 8 181 9.73e-25 95.5
MS.gene36481.t1 MTR_3g080940 33.333 162 91 4 1 148 15 173 8.26e-23 90.1
MS.gene36481.t1 MTR_1g063160 36.196 163 86 5 1 151 8 164 1.96e-22 88.6
MS.gene36481.t1 MTR_1g054265 37.423 163 84 5 1 151 8 164 3.81e-22 87.4
MS.gene36481.t1 MTR_8g051580 34.591 159 88 4 4 151 11 164 4.21e-22 87.8
MS.gene36481.t1 MTR_7g028448 38.060 134 74 2 8 137 25 153 1.20e-20 83.6
MS.gene36481.t1 MTR_4g036915 38.060 134 74 2 8 137 25 153 1.20e-20 83.6
MS.gene36481.t1 MTR_8g046350 33.758 157 88 5 3 151 10 158 1.76e-20 82.8
MS.gene36481.t1 MTR_3g030770 40.741 108 60 2 1 105 15 121 4.33e-19 80.9
MS.gene36481.t1 MTR_1g108510 42.000 100 57 1 1 100 15 113 4.67e-19 80.9
MS.gene36481.t1 MTR_8g043650 32.544 169 101 4 1 157 15 182 1.79e-18 79.3
MS.gene36481.t1 MTR_2g093190 32.768 177 92 5 1 151 15 190 3.64e-18 78.6
MS.gene36481.t1 MTR_1g108580 41.000 100 58 1 1 100 15 113 3.79e-18 78.2
MS.gene36481.t1 MTR_1g106070 39.252 107 60 2 4 106 18 123 5.26e-18 77.0
MS.gene36481.t1 MTR_3g052870 40.000 110 61 2 1 106 15 123 1.33e-17 76.6
MS.gene36481.t1 MTR_1g105920 40.000 110 61 2 1 106 15 123 3.50e-17 75.9
MS.gene36481.t1 MTR_5g053390 53.846 65 30 0 1 65 15 79 5.19e-17 75.5
MS.gene36481.t1 MTR_7g075870 32.061 131 83 1 1 131 8 132 6.47e-17 74.7
MS.gene36481.t1 MTR_2g009890 31.973 147 80 3 4 134 11 153 7.82e-17 75.5
MS.gene36481.t1 MTR_5g045560 36.134 119 55 2 1 111 15 120 8.45e-17 75.1
MS.gene36481.t1 MTR_1g105910 31.579 171 100 3 1 157 15 182 1.05e-16 74.7
MS.gene36481.t1 MTR_3g052920 39.252 107 60 2 4 106 18 123 1.72e-16 73.9
MS.gene36481.t1 MTR_1g012570 40.000 110 61 2 1 106 15 123 3.06e-16 73.6
MS.gene36481.t1 MTR_2g085280 53.968 63 29 0 1 63 15 77 3.69e-16 73.2
MS.gene36481.t1 MTR_2g085250 53.968 63 29 0 1 63 15 77 3.69e-16 73.2
MS.gene36481.t1 MTR_1g105905 37.963 108 62 2 4 107 1 107 4.64e-16 72.8
MS.gene36481.t1 MTR_2g030740 55.556 63 28 0 1 63 15 77 5.03e-16 72.8
MS.gene36481.t1 MTR_0121s0100 40.426 94 55 1 1 94 15 107 6.23e-16 70.5
MS.gene36481.t1 MTR_1g077360 49.231 65 33 0 1 65 15 79 7.60e-16 72.4
MS.gene36481.t1 MTR_5g066180 34.559 136 65 5 4 131 11 130 1.06e-15 71.6
MS.gene36481.t1 MTR_1g075600 50.769 65 32 0 1 65 15 79 1.13e-15 72.0
MS.gene36481.t1 MTR_7g075870 31.818 132 83 2 1 131 8 133 1.23e-15 71.2
MS.gene36481.t1 MTR_3g030780 36.000 100 63 1 1 100 15 113 9.42e-15 67.4
MS.gene36481.t1 MTR_5g055100 49.231 65 33 0 1 65 15 79 1.21e-14 69.3
MS.gene36481.t1 MTR_1g101970 37.000 100 51 1 1 100 8 95 3.73e-14 67.0
MS.gene36481.t1 MTR_4g109830 33.594 128 78 3 4 130 11 132 4.00e-14 67.8
MS.gene36481.t1 MTR_3g005530 32.203 118 63 2 4 104 11 128 4.27e-14 67.4
MS.gene36481.t1 MTR_0121s0080 35.652 115 70 2 1 115 15 125 5.50e-14 67.4
MS.gene36481.t1 MTR_5g031000 30.894 123 74 3 4 123 11 125 7.22e-14 67.0
MS.gene36481.t1 MTR_5g031000 30.894 123 74 3 4 123 11 125 7.57e-14 67.0
MS.gene36481.t1 MTR_8g033220 28.777 139 94 1 1 139 8 141 1.16e-13 66.2
MS.gene36481.t1 MTR_6g081890 59.524 84 20 2 56 139 80 149 1.17e-13 65.1
MS.gene36481.t1 MTR_8g033220 29.008 131 88 1 1 131 8 133 1.32e-13 66.2
MS.gene36481.t1 MTR_3g452380 30.469 128 83 2 4 131 26 147 1.63e-13 66.2
MS.gene36481.t1 MTR_2g105290 31.410 156 87 6 4 145 21 170 1.85e-13 65.1
MS.gene36481.t1 MTR_4g102530 45.161 62 34 0 1 62 8 69 1.97e-13 65.5
MS.gene36481.t1 MTR_3g067875 55.357 56 25 0 4 59 1 56 2.55e-13 62.0
MS.gene36481.t1 MTR_5g032150 33.333 132 74 5 4 131 11 132 3.21e-13 65.1
MS.gene36481.t1 MTR_5g032520 33.333 132 74 5 4 131 11 132 3.24e-13 65.1
MS.gene36481.t1 MTR_4g127140 35.000 100 64 1 8 107 25 123 5.28e-13 63.9
MS.gene36481.t1 MTR_1g053070 31.008 129 87 1 4 132 11 137 6.26e-13 64.7
MS.gene36481.t1 MTR_4g093970 31.298 131 80 3 4 131 37 160 6.35e-13 64.7
MS.gene36481.t1 MTR_3g109930 29.286 140 90 2 10 140 17 156 1.14e-12 62.8
MS.gene36481.t1 MTR_8g086290 43.860 57 32 0 8 64 25 81 1.35e-12 62.8
MS.gene36481.t1 MTR_0003s0590 41.429 70 41 0 4 73 11 80 3.92e-12 62.4
MS.gene36481.t1 MTR_1g038300 26.119 134 86 3 4 131 11 137 6.67e-12 61.6
MS.gene36481.t1 MTR_3g113030 29.134 127 67 3 4 123 11 121 7.08e-12 61.6
MS.gene36481.t1 MTR_5g021270 40.625 64 36 1 1 62 8 71 8.09e-12 61.2
MS.gene36481.t1 MTR_5g021270 40.625 64 36 1 1 62 8 71 8.18e-12 61.2
MS.gene36481.t1 MTR_4g036050 30.872 149 91 5 4 144 11 155 9.51e-12 60.5
MS.gene36481.t1 MTR_3g102570 32.117 137 70 7 4 133 11 131 1.12e-11 61.6
MS.gene36481.t1 MTR_4g036050 34.694 98 61 2 4 98 11 108 1.34e-11 60.5
MS.gene36481.t1 MTR_4g036050 34.694 98 61 2 4 98 11 108 1.36e-11 60.1
MS.gene36481.t1 MTR_4g036050 34.694 98 61 2 4 98 11 108 1.36e-11 60.1
MS.gene36481.t1 MTR_7g062350 35.514 107 66 2 3 109 29 132 1.54e-11 60.8
MS.gene36481.t1 MTR_8g033270 28.873 142 82 3 4 140 11 138 2.26e-11 60.5
MS.gene36481.t1 MTR_6g464720 42.857 63 35 1 1 62 8 70 4.86e-11 59.3
MS.gene36481.t1 MTR_8g087860 25.781 128 89 1 4 131 27 148 5.10e-11 59.3
MS.gene36481.t1 MTR_8g066260 29.688 128 83 3 4 130 11 132 5.50e-11 59.3
MS.gene36481.t1 MTR_7g016630 33.333 72 47 1 4 74 11 82 6.35e-11 59.3
MS.gene36481.t1 MTR_4g051538 43.636 55 31 0 11 65 25 79 7.55e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36481.t1 AT2G34440 36.527 167 86 3 1 149 8 172 7.62e-30 107
MS.gene36481.t1 AT2G24840 37.500 144 74 4 4 133 72 213 5.73e-21 86.7
MS.gene36481.t1 AT3G66656 52.703 74 35 0 1 74 8 81 4.32e-19 79.7
MS.gene36481.t1 AT1G28460 44.037 109 58 3 9 117 22 127 1.70e-18 78.2
MS.gene36481.t1 AT2G45660 30.000 130 85 1 1 130 8 131 2.56e-18 77.4
MS.gene36481.t1 AT2G45660 30.000 130 85 1 1 130 8 131 8.53e-18 77.0
MS.gene36481.t1 AT1G29962 41.071 112 60 4 10 118 23 131 4.66e-17 74.7
MS.gene36481.t1 AT3G57230 36.607 112 54 2 4 99 11 121 7.45e-17 73.2
MS.gene36481.t1 AT4G24540 35.115 131 65 5 4 127 11 128 1.23e-16 74.3
MS.gene36481.t1 AT4G09960 34.746 118 60 2 4 104 12 129 3.12e-16 73.6
MS.gene36481.t1 AT4G09960 34.746 118 60 2 4 104 11 128 3.27e-16 73.2
MS.gene36481.t1 AT4G09960 34.746 118 60 2 4 104 11 128 3.66e-16 72.8
MS.gene36481.t1 AT4G09960 34.746 118 60 2 4 104 21 138 4.07e-16 73.2
MS.gene36481.t1 AT3G57230 36.607 112 54 2 4 99 11 121 4.42e-16 73.2
MS.gene36481.t1 AT3G57230 36.607 112 54 2 4 99 11 121 4.42e-16 73.2
MS.gene36481.t1 AT4G22950 36.538 104 59 1 1 104 8 104 6.29e-16 71.2
MS.gene36481.t1 AT4G09960 34.746 118 60 2 4 104 37 154 6.52e-16 72.8
MS.gene36481.t1 AT4G09960 34.746 118 60 2 4 104 106 223 6.62e-16 73.6
MS.gene36481.t1 AT5G60440 40.909 110 60 2 4 108 16 125 1.57e-15 72.4
MS.gene36481.t1 AT4G22950 31.724 145 92 1 1 145 8 145 2.77e-15 70.5
MS.gene36481.t1 AT4G22950 31.724 145 92 1 1 145 8 145 2.77e-15 70.5
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 2.81e-15 69.3
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 2.81e-15 69.3
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 2.81e-15 69.3
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 2.81e-15 69.3
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 2.81e-15 69.3
MS.gene36481.t1 AT5G62165 28.058 139 90 2 1 137 8 138 5.42e-15 68.6
MS.gene36481.t1 AT5G62165 28.058 139 90 2 1 137 8 138 5.42e-15 68.6
MS.gene36481.t1 AT5G62165 28.058 139 90 2 1 137 8 138 5.42e-15 68.6
MS.gene36481.t1 AT1G01530 38.938 113 58 3 1 108 11 117 5.69e-15 70.1
MS.gene36481.t1 AT1G28450 40.541 111 60 4 10 117 23 130 1.77e-14 67.8
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 1.97e-14 67.8
MS.gene36481.t1 AT5G62165 28.571 133 85 2 1 131 8 132 1.97e-14 67.8
MS.gene36481.t1 AT1G65360 33.945 109 51 2 12 111 24 120 2.13e-14 68.6
MS.gene36481.t1 AT5G62165 28.058 139 90 2 1 137 8 138 2.60e-14 67.8
MS.gene36481.t1 AT5G62165 28.058 139 90 2 1 137 8 138 2.60e-14 67.8
MS.gene36481.t1 AT5G62165 28.058 139 90 2 1 137 8 138 2.60e-14 67.8
MS.gene36481.t1 AT4G37940 30.081 123 79 2 1 123 8 123 4.35e-14 66.6
MS.gene36481.t1 AT4G37940 30.081 123 79 2 1 123 8 123 4.45e-14 67.4
MS.gene36481.t1 AT4G37940 30.081 123 79 2 1 123 8 123 6.12e-14 67.0
MS.gene36481.t1 AT2G22540 31.098 164 89 6 4 155 11 162 7.13e-14 67.0
MS.gene36481.t1 AT2G22540 31.098 164 89 6 4 155 11 162 7.13e-14 67.0
MS.gene36481.t1 AT5G51860 29.630 135 83 3 4 134 11 137 1.36e-13 65.9
MS.gene36481.t1 AT5G51860 29.630 135 83 3 4 134 11 137 1.40e-13 65.9
MS.gene36481.t1 AT5G62165 41.935 62 36 0 1 62 8 69 1.52e-13 63.5
MS.gene36481.t1 AT2G14210 46.667 60 31 1 4 62 11 70 1.73e-13 65.9
MS.gene36481.t1 AT1G69120 37.209 86 48 2 4 88 11 91 1.81e-13 65.9
MS.gene36481.t1 AT2G14210 46.667 60 31 1 4 62 11 70 1.92e-13 65.9
MS.gene36481.t1 AT5G51870 44.068 59 33 0 4 62 11 69 2.08e-13 65.5
MS.gene36481.t1 AT5G51870 44.068 59 33 0 4 62 11 69 2.18e-13 64.7
MS.gene36481.t1 AT1G69120 37.209 86 48 2 4 88 11 91 2.91e-13 65.9
MS.gene36481.t1 AT5G51870 44.068 59 33 0 4 62 11 69 3.39e-13 65.1
MS.gene36481.t1 AT5G51870 44.068 59 33 0 4 62 34 92 3.50e-13 64.7
MS.gene36481.t1 AT5G51870 44.068 59 33 0 4 62 21 79 4.40e-13 64.7
MS.gene36481.t1 AT3G58780 29.457 129 83 2 4 131 26 147 9.07e-13 64.3
MS.gene36481.t1 AT3G58780 29.457 129 83 2 4 131 32 153 1.04e-12 64.3
MS.gene36481.t1 AT3G58780 29.457 129 83 2 4 131 26 147 1.07e-12 64.3
MS.gene36481.t1 AT2G42830 28.682 129 84 2 4 131 26 147 1.08e-12 63.9
MS.gene36481.t1 AT2G42830 28.682 129 84 2 4 131 26 147 1.09e-12 63.9
MS.gene36481.t1 AT1G47760 28.221 163 83 3 1 148 8 151 1.28e-12 62.8
MS.gene36481.t1 AT2G22630 27.344 128 86 2 4 131 11 131 1.32e-12 63.5
MS.gene36481.t1 AT2G22630 27.344 128 86 2 4 131 11 131 1.32e-12 63.5
MS.gene36481.t1 AT1G26310 30.000 130 84 3 4 131 11 135 1.36e-12 63.9
MS.gene36481.t1 AT5G13790 31.304 115 74 2 4 118 11 120 1.65e-12 63.9
MS.gene36481.t1 AT4G11880 34.286 105 61 2 1 104 8 105 1.77e-12 62.4
MS.gene36481.t1 AT4G11880 34.286 105 61 2 1 104 8 105 1.77e-12 62.4
MS.gene36481.t1 AT1G72350 51.852 54 24 1 10 63 58 109 2.08e-12 63.2
MS.gene36481.t1 AT4G11880 34.286 105 61 2 1 104 8 105 2.81e-12 62.4
MS.gene36481.t1 AT4G11880 34.286 105 61 2 1 104 8 105 2.81e-12 62.4
MS.gene36481.t1 AT3G54340 45.902 61 31 1 4 62 11 71 3.43e-12 62.4
MS.gene36481.t1 AT2G45650 43.548 62 35 0 1 62 8 69 3.51e-12 62.8
MS.gene36481.t1 AT5G13790 32.174 115 70 3 4 118 11 117 7.18e-12 62.0
MS.gene36481.t1 AT3G57390 29.252 147 96 3 4 145 11 154 8.62e-12 61.2
MS.gene36481.t1 AT3G57390 29.252 147 96 3 4 145 11 154 1.12e-11 61.2
MS.gene36481.t1 AT4G36590 35.714 98 59 1 1 94 13 110 1.17e-11 61.2
MS.gene36481.t1 AT5G23260 42.857 63 34 1 4 64 27 89 1.18e-11 61.2
MS.gene36481.t1 AT5G23260 42.857 63 34 1 4 64 11 73 1.19e-11 61.2
MS.gene36481.t1 AT5G23260 42.857 63 34 1 4 64 27 89 1.39e-11 61.2
MS.gene36481.t1 AT5G23260 42.857 63 34 1 4 64 11 73 1.50e-11 60.8
MS.gene36481.t1 AT1G71692 34.615 104 59 3 4 98 11 114 2.17e-11 60.1
MS.gene36481.t1 AT2G22540 30.488 164 85 7 4 155 11 157 3.64e-11 59.7
MS.gene36481.t1 AT3G61120 45.763 59 32 0 4 62 11 69 3.84e-11 59.7
MS.gene36481.t1 AT5G60910 43.333 60 33 1 4 62 11 70 6.96e-11 58.9
MS.gene36481.t1 AT3G58780 27.344 128 80 1 4 131 26 140 7.78e-11 58.9

Find 32 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCACAGTTTGAAAATT+TGG 0.145503 4.1:+18408969 None:intergenic
TTGTTCATCATGTTGATATT+TGG 0.210857 4.1:+18408876 None:intergenic
CTCCACCTTCTTCAACTCTT+TGG 0.225832 4.1:+18408836 None:intergenic
GCCTATTCGCATCATTGATT+TGG 0.295136 4.1:-18408679 MS.gene36481:CDS
AGTGGTAATCCATTTGCTTT+TGG 0.324426 4.1:-18408996 MS.gene36481:CDS
TTAAGATCAGCAAGTGCAAC+AGG 0.372559 4.1:+18408792 None:intergenic
AAAGCTAGAGTTGGTATAGT+TGG 0.376951 4.1:-18409029 MS.gene36481:CDS
AGATGGAACTTGTGAAGAAC+AGG 0.420903 4.1:-18409127 MS.gene36481:CDS
TTGATTTGGTTTGTAAAAGA+AGG 0.423169 4.1:-18408665 MS.gene36481:CDS
CTGATTCTTGTCCTTCATGA+AGG 0.455174 4.1:+18408940 None:intergenic
TTTGGAGTACCAAAAGCAAA+TGG 0.462718 4.1:+18408987 None:intergenic
ACCAAATCAATGATGCGAAT+AGG 0.481899 4.1:+18408678 None:intergenic
ATTCTTTGTAAAGCTAGAGT+TGG 0.512424 4.1:-18409038 MS.gene36481:CDS
TTGTGAAGAACAGGAGTGCT+AGG 0.529512 4.1:-18409118 MS.gene36481:CDS
AAGCAAATGGATTACCACTT+GGG 0.543871 4.1:+18409000 None:intergenic
AAGGTGGAGGAAGTTAAGAA+AGG 0.546878 4.1:-18408822 MS.gene36481:CDS
GAAGGACAAGAATCAGAAGC+TGG 0.549251 4.1:-18408933 MS.gene36481:CDS
AAAAGAACTTCTAAAAGTGA+AGG 0.559771 4.1:-18408766 MS.gene36481:CDS
AAAGCAAATGGATTACCACT+TGG 0.562709 4.1:+18408999 None:intergenic
TTTAACCAAAGAGTTGAAGA+AGG 0.565193 4.1:-18408841 MS.gene36481:CDS
CAAAGAGTTGAAGAAGGTGG+AGG 0.587290 4.1:-18408835 MS.gene36481:CDS
AATCAGAAGCTGGATCATCA+AGG 0.592352 4.1:-18408923 MS.gene36481:CDS
GTTGAACAATACCTTCATGA+AGG 0.592753 4.1:-18408951 MS.gene36481:CDS
GCTTCGCTGAAAGAGCTCCA+TGG 0.609990 4.1:-18408744 MS.gene36481:CDS
ATAGTTGGATTTACCCCAAG+TGG 0.610668 4.1:-18409014 MS.gene36481:CDS
AACCAAAGAGTTGAAGAAGG+TGG 0.610693 4.1:-18408838 MS.gene36481:CDS
AGCAAATGGATTACCACTTG+GGG 0.611363 4.1:+18409001 None:intergenic
TAAGATCAGCAAGTGCAACA+GGG 0.649495 4.1:+18408793 None:intergenic
AAGATCAGCAAGTGCAACAG+GGG 0.658886 4.1:+18408794 None:intergenic
ATGATGAACAAAGAATTGAG+TGG 0.675457 4.1:-18408864 MS.gene36481:CDS
ATGCTGCCTCGATGTCACCA+TGG 0.676966 4.1:+18408727 None:intergenic
AGAGCTCCATGGTGACATCG+AGG 0.706026 4.1:-18408733 MS.gene36481:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTGTTCATCATGTTGATATT+TGG + chr4.1:18408914-18408933 None:intergenic 25.0%
!! AAAAGAACTTCTAAAAGTGA+AGG - chr4.1:18409021-18409040 MS.gene36481:CDS 25.0%
!! TTGATATTTGGATTTTCAGA+GGG + chr4.1:18408902-18408921 None:intergenic 25.0%
!!! TTGATTTGGTTTGTAAAAGA+AGG - chr4.1:18409122-18409141 MS.gene36481:CDS 25.0%
ATGATGAACAAAGAATTGAG+TGG - chr4.1:18408923-18408942 MS.gene36481:CDS 30.0%
ATTCTTTGTAAAGCTAGAGT+TGG - chr4.1:18408749-18408768 MS.gene36481:CDS 30.0%
TCAACCACAGTTTGAAAATT+TGG + chr4.1:18408821-18408840 None:intergenic 30.0%
TTTAACCAAAGAGTTGAAGA+AGG - chr4.1:18408946-18408965 MS.gene36481:CDS 30.0%
! ACGTTTTCAAAAAGAAAGAG+TGG - chr4.1:18408698-18408717 MS.gene36481:CDS 30.0%
! GTTGATATTTGGATTTTCAG+AGG + chr4.1:18408903-18408922 None:intergenic 30.0%
! TACTCCAAATTTTCAAACTG+TGG - chr4.1:18408814-18408833 MS.gene36481:CDS 30.0%
ACCAAATCAATGATGCGAAT+AGG + chr4.1:18409112-18409131 None:intergenic 35.0%
GTTGAACAATACCTTCATGA+AGG - chr4.1:18408836-18408855 MS.gene36481:CDS 35.0%
! AGTGGTAATCCATTTGCTTT+TGG - chr4.1:18408791-18408810 MS.gene36481:CDS 35.0%
! TTTGGAGTACCAAAAGCAAA+TGG + chr4.1:18408803-18408822 None:intergenic 35.0%
!! AAAGCAAATGGATTACCACT+TGG + chr4.1:18408791-18408810 None:intergenic 35.0%
!! AAAGCTAGAGTTGGTATAGT+TGG - chr4.1:18408758-18408777 MS.gene36481:CDS 35.0%
!! AAGCAAATGGATTACCACTT+GGG + chr4.1:18408790-18408809 None:intergenic 35.0%
AACCAAAGAGTTGAAGAAGG+TGG - chr4.1:18408949-18408968 MS.gene36481:CDS 40.0%
AAGGTGGAGGAAGTTAAGAA+AGG - chr4.1:18408965-18408984 MS.gene36481:CDS 40.0%
AATCAGAAGCTGGATCATCA+AGG - chr4.1:18408864-18408883 MS.gene36481:CDS 40.0%
ATAGTTGGATTTACCCCAAG+TGG - chr4.1:18408773-18408792 MS.gene36481:CDS 40.0%
CTGATTCTTGTCCTTCATGA+AGG + chr4.1:18408850-18408869 None:intergenic 40.0%
TAAGATCAGCAAGTGCAACA+GGG + chr4.1:18408997-18409016 None:intergenic 40.0%
TTAAGATCAGCAAGTGCAAC+AGG + chr4.1:18408998-18409017 None:intergenic 40.0%
! GCCTATTCGCATCATTGATT+TGG - chr4.1:18409108-18409127 MS.gene36481:CDS 40.0%
!! AGCAAATGGATTACCACTTG+GGG + chr4.1:18408789-18408808 None:intergenic 40.0%
AAGATCAGCAAGTGCAACAG+GGG + chr4.1:18408996-18409015 None:intergenic 45.0%
CAAAGAGTTGAAGAAGGTGG+AGG - chr4.1:18408952-18408971 MS.gene36481:CDS 45.0%
CTCCACCTTCTTCAACTCTT+TGG + chr4.1:18408954-18408973 None:intergenic 45.0%
GAAGGACAAGAATCAGAAGC+TGG - chr4.1:18408854-18408873 MS.gene36481:CDS 45.0%
!! TTGTGAAGAACAGGAGTGCT+AGG - chr4.1:18408669-18408688 MS.gene36481:CDS 45.0%
AGAGCTCCATGGTGACATCG+AGG - chr4.1:18409054-18409073 MS.gene36481:CDS 55.0%
ATGCTGCCTCGATGTCACCA+TGG + chr4.1:18409063-18409082 None:intergenic 55.0%
GCTTCGCTGAAAGAGCTCCA+TGG - chr4.1:18409043-18409062 MS.gene36481:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 18408662 18409147 18408662 ID=MS.gene36481
chr4.1 mRNA 18408662 18409147 18408662 ID=MS.gene36481.t1;Parent=MS.gene36481
chr4.1 exon 18408662 18409147 18408662 ID=MS.gene36481.t1.exon1;Parent=MS.gene36481.t1
chr4.1 CDS 18408662 18409147 18408662 ID=cds.MS.gene36481.t1;Parent=MS.gene36481.t1
Gene Sequence

>MS.gene36481

ATGGAACTTGTGAAGAACAGGAGTGCTAGGTATGTCACGTTTTCAAAAAGAAAGAGTGGTCTTTTTAAAAAAGCAAGTGAATTATCAATTCTTTGTAAAGCTAGAGTTGGTATAGTTGGATTTACCCCAAGTGGTAATCCATTTGCTTTTGGTACTCCAAATTTTCAAACTGTGGTTGAACAATACCTTCATGAAGGACAAGAATCAGAAGCTGGATCATCAAGGCAAATTGTTACACCCTCTGAAAATCCAAATATCAACATGATGAACAAAGAATTGAGTGGTTTAACCAAAGAGTTGAAGAAGGTGGAGGAAGTTAAGAAAGGTAAAGCCCCTGTTGCACTTGCTGATCTTAACTTAAAAGAACTTCTAAAAGTGAAGGCTTCGCTGAAAGAGCTCCATGGTGACATCGAGGCAGCATCTTCTTTGCTTCTTCTTTCAAAGAAGCCTATTCGCATCATTGATTTGGTTTGTAAAAGAAGGTGA
Protein sequence

>MS.gene36481.t1

MELVKNRSARYVTFSKRKSGLFKKASELSILCKARVGIVGFTPSGNPFAFGTPNFQTVVEQYLHEGQESEAGSSRQIVTPSENPNINMMNKELSGLTKELKKVEEVKKGKAPVALADLNLKELLKVKASLKELHGDIEAASSLLLLSKKPIRIIDLVCKRR