Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36510.t1 | XP_013457368.1 | 97.4 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.10E-82 | 315.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36510.t1 | A0A072UNM6 | 97.4 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 7.6e-83 | 315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene36510.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36510.t1 | MTR_4g094680 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 4.93e-109 | 310 |
| MS.gene36510.t1 | MTR_2g036170 | 74.046 | 131 | 23 | 2 | 21 | 151 | 36 | 155 | 3.68e-64 | 196 |
| MS.gene36510.t1 | MTR_4g116300 | 61.364 | 132 | 46 | 1 | 20 | 151 | 4 | 130 | 6.88e-55 | 173 |
| MS.gene36510.t1 | MTR_2g055210 | 52.632 | 133 | 57 | 1 | 19 | 151 | 99 | 225 | 4.22e-47 | 155 |
| MS.gene36510.t1 | MTR_4g078170 | 45.802 | 131 | 65 | 2 | 22 | 151 | 15 | 140 | 4.94e-35 | 121 |
| MS.gene36510.t1 | MTR_8g066820 | 43.478 | 138 | 72 | 2 | 15 | 151 | 26 | 158 | 8.27e-34 | 119 |
| MS.gene36510.t1 | MTR_5g030130 | 44.030 | 134 | 69 | 2 | 19 | 151 | 32 | 160 | 1.98e-33 | 118 |
| MS.gene36510.t1 | MTR_5g030130 | 44.030 | 134 | 69 | 2 | 19 | 151 | 32 | 160 | 3.02e-33 | 116 |
| MS.gene36510.t1 | MTR_5g007230 | 43.511 | 131 | 68 | 2 | 22 | 151 | 21 | 146 | 1.56e-32 | 115 |
| MS.gene36510.t1 | MTR_7g102790 | 43.284 | 134 | 67 | 3 | 22 | 151 | 7 | 135 | 1.49e-29 | 107 |
| MS.gene36510.t1 | MTR_1g062160 | 40.909 | 132 | 71 | 3 | 22 | 151 | 7 | 133 | 3.24e-28 | 103 |
| MS.gene36510.t1 | MTR_2g084495 | 41.045 | 134 | 73 | 4 | 24 | 151 | 6 | 139 | 2.09e-24 | 94.4 |
| MS.gene36510.t1 | MTR_2g060540 | 39.552 | 134 | 75 | 4 | 24 | 151 | 12 | 145 | 7.01e-23 | 88.6 |
| MS.gene36510.t1 | MTR_2g084525 | 38.806 | 134 | 76 | 4 | 24 | 151 | 6 | 139 | 9.71e-23 | 90.5 |
| MS.gene36510.t1 | MTR_2g060500 | 38.806 | 134 | 76 | 4 | 24 | 151 | 12 | 145 | 6.09e-22 | 85.9 |
| MS.gene36510.t1 | MTR_2g084510 | 36.567 | 134 | 79 | 4 | 24 | 151 | 5 | 138 | 9.14e-22 | 87.8 |
| MS.gene36510.t1 | MTR_8g105930 | 32.639 | 144 | 80 | 4 | 24 | 151 | 15 | 157 | 2.09e-18 | 79.0 |
| MS.gene36510.t1 | MTR_5g077740 | 30.323 | 155 | 92 | 5 | 5 | 151 | 2 | 148 | 8.32e-16 | 70.9 |
| MS.gene36510.t1 | MTR_8g097310 | 38.144 | 97 | 49 | 4 | 60 | 151 | 4 | 94 | 1.27e-12 | 62.0 |
| MS.gene36510.t1 | MTR_1g032880 | 39.773 | 88 | 47 | 3 | 66 | 151 | 26 | 109 | 4.40e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36510.t1 | AT1G31040 | 74.046 | 131 | 28 | 1 | 21 | 151 | 18 | 142 | 3.76e-70 | 211 |
| MS.gene36510.t1 | AT3G60670 | 58.824 | 136 | 51 | 1 | 16 | 151 | 1 | 131 | 5.31e-54 | 171 |
| MS.gene36510.t1 | AT2G12646 | 59.091 | 132 | 49 | 1 | 20 | 151 | 4 | 130 | 1.07e-51 | 165 |
| MS.gene36510.t1 | AT2G12646 | 59.091 | 132 | 49 | 1 | 20 | 151 | 4 | 130 | 1.07e-51 | 165 |
| MS.gene36510.t1 | AT2G12646 | 58.779 | 131 | 49 | 1 | 21 | 151 | 2 | 127 | 5.34e-51 | 163 |
| MS.gene36510.t1 | AT2G01818 | 46.429 | 140 | 70 | 2 | 17 | 151 | 6 | 145 | 8.74e-37 | 126 |
| MS.gene36510.t1 | AT1G32700 | 44.275 | 131 | 67 | 2 | 22 | 151 | 12 | 137 | 1.62e-31 | 112 |
| MS.gene36510.t1 | AT1G21000 | 43.511 | 131 | 68 | 2 | 22 | 151 | 13 | 138 | 1.74e-31 | 113 |
| MS.gene36510.t1 | AT1G21000 | 43.511 | 131 | 68 | 2 | 22 | 151 | 16 | 141 | 2.10e-31 | 113 |
| MS.gene36510.t1 | AT4G17900 | 44.444 | 135 | 68 | 3 | 19 | 151 | 31 | 160 | 2.35e-31 | 112 |
| MS.gene36510.t1 | AT4G17900 | 44.444 | 135 | 68 | 3 | 19 | 151 | 17 | 146 | 2.75e-31 | 112 |
| MS.gene36510.t1 | AT2G27930 | 43.478 | 138 | 72 | 3 | 20 | 151 | 2 | 139 | 5.45e-31 | 109 |
| MS.gene36510.t1 | AT2G27930 | 43.478 | 138 | 72 | 3 | 20 | 151 | 2 | 139 | 5.45e-31 | 109 |
| MS.gene36510.t1 | AT2G27930 | 43.478 | 138 | 72 | 3 | 20 | 151 | 2 | 139 | 6.84e-31 | 110 |
| MS.gene36510.t1 | AT2G27930 | 43.478 | 138 | 72 | 3 | 20 | 151 | 2 | 139 | 6.84e-31 | 110 |
| MS.gene36510.t1 | AT1G76590 | 43.511 | 131 | 68 | 2 | 22 | 151 | 18 | 143 | 2.36e-30 | 110 |
| MS.gene36510.t1 | AT1G43000 | 41.221 | 131 | 71 | 2 | 22 | 151 | 16 | 141 | 4.57e-28 | 103 |
| MS.gene36510.t1 | AT1G43000 | 41.221 | 131 | 71 | 2 | 22 | 151 | 9 | 134 | 5.08e-28 | 103 |
| MS.gene36510.t1 | AT5G46710 | 40.000 | 135 | 74 | 3 | 19 | 151 | 25 | 154 | 7.75e-27 | 99.0 |
| MS.gene36510.t1 | AT5G46710 | 40.741 | 135 | 73 | 3 | 19 | 151 | 9 | 138 | 1.52e-26 | 99.8 |
| MS.gene36510.t1 | AT5G46710 | 40.741 | 135 | 73 | 3 | 19 | 151 | 25 | 154 | 1.57e-26 | 100 |
| MS.gene36510.t1 | AT1G32700 | 44.660 | 103 | 51 | 2 | 50 | 151 | 1 | 98 | 1.34e-22 | 88.6 |
| MS.gene36510.t1 | AT2G01818 | 50.000 | 76 | 37 | 1 | 77 | 151 | 6 | 81 | 2.58e-19 | 79.3 |
| MS.gene36510.t1 | AT2G27930 | 46.429 | 84 | 41 | 1 | 72 | 151 | 59 | 142 | 9.70e-18 | 76.3 |
| MS.gene36510.t1 | AT2G27930 | 46.429 | 84 | 41 | 1 | 72 | 151 | 59 | 142 | 9.70e-18 | 76.3 |
Find 49 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCCTTTGCTTCTGATGA+TGG | 0.298330 | 4.1:-18036440 | None:intergenic |
| TTCGCACCGTTAATCGTATA+TGG | 0.314823 | 4.1:-18038966 | None:intergenic |
| TTAATGGGTGAGACATTCTT+TGG | 0.323122 | 4.1:+18036500 | MS.gene36510:CDS |
| CCCCTCTCATCCCCTCCTTC+AGG | 0.332528 | 4.1:+18036619 | MS.gene36510:CDS |
| GGGGATGAGAGGGGTGAGAA+GGG | 0.369978 | 4.1:-18036610 | None:intergenic |
| CACTTGTGACAGGATTCTTC+AGG | 0.373696 | 4.1:+18039067 | MS.gene36510:CDS |
| AGGGGATGAGAGGGGTGAGA+AGG | 0.396086 | 4.1:-18036611 | None:intergenic |
| TATTTGTTTGACCTGAATAT+AGG | 0.411844 | 4.1:-18038788 | None:intergenic |
| CATCGATTGCTCCTATATTC+AGG | 0.420826 | 4.1:+18038777 | MS.gene36510:CDS |
| TAATGGGTGAGACATTCTTT+GGG | 0.422434 | 4.1:+18036501 | MS.gene36510:CDS |
| CTCCCTTTGCTTCTGATGAT+GGG | 0.428222 | 4.1:-18036439 | None:intergenic |
| TGCATGGTTAGAGAGGTTAA+TGG | 0.448349 | 4.1:+18036484 | MS.gene36510:CDS |
| TTACCATGACGTGGTTCAAT+TGG | 0.448712 | 4.1:+18038738 | MS.gene36510:CDS |
| ACTCTTGCTGCACTTGTGAC+AGG | 0.455565 | 4.1:+18039057 | MS.gene36510:CDS |
| TGCATGAGAGAGAACAGAAA+TGG | 0.467641 | 4.1:-18039097 | None:intergenic |
| GGGTGAGACATGAGAGGAAG+TGG | 0.470262 | 4.1:+18036410 | None:intergenic |
| GCATGGTTAGAGAGGTTAAT+GGG | 0.474331 | 4.1:+18036485 | MS.gene36510:CDS |
| ACCTGAAGGAGGGGATGAGA+GGG | 0.482275 | 4.1:-18036620 | None:intergenic |
| AGGGAGACAGTGAGGGCAGA+TGG | 0.494496 | 4.1:-18036591 | None:intergenic |
| ATGCAGCCATATACGATTAA+CGG | 0.494856 | 4.1:+18038960 | MS.gene36510:intron |
| TACCATGACGTGGTTCAATT+GGG | 0.505968 | 4.1:+18038739 | MS.gene36510:CDS |
| TACCTGAAGGAGGGGATGAG+AGG | 0.543545 | 4.1:-18036621 | None:intergenic |
| AATGGGTGAGACATTCTTTG+GGG | 0.548115 | 4.1:+18036502 | MS.gene36510:CDS |
| GTCACAAGTGCAGCAAGAGT+TGG | 0.556394 | 4.1:-18039054 | None:intergenic |
| GGGTGAGAAGGGAGACAGTG+AGG | 0.556701 | 4.1:-18036599 | None:intergenic |
| GGTGAGAAGGGAGACAGTGA+GGG | 0.559740 | 4.1:-18036598 | None:intergenic |
| TGACCCATCATCAGAAGCAA+AGG | 0.564164 | 4.1:+18036436 | MS.gene36510:CDS |
| TAAATGAGAGGGTGCAGTCA+AGG | 0.569301 | 4.1:+18039000 | MS.gene36510:CDS |
| GACCCATCATCAGAAGCAAA+GGG | 0.572363 | 4.1:+18036437 | MS.gene36510:CDS |
| TTTCTGTTCTCTCTCATGCA+AGG | 0.584910 | 4.1:+18039100 | MS.gene36510:CDS |
| TGAGAGAGAACAGAAATGGA+AGG | 0.587138 | 4.1:-18039093 | None:intergenic |
| GCCATATTGTGCAGGTGAGA+AGG | 0.589373 | 4.1:+18038710 | MS.gene36510:intron |
| ATTAACCTCTCTAACCATGC+AGG | 0.589991 | 4.1:-18036482 | None:intergenic |
| GTTAGTAGTACCTGAAGGAG+GGG | 0.591333 | 4.1:-18036629 | None:intergenic |
| AAGTTAGTAGTACCTGAAGG+AGG | 0.592377 | 4.1:-18036631 | None:intergenic |
| AGTGATATTCTTAAATGAGA+GGG | 0.594917 | 4.1:+18038989 | MS.gene36510:CDS |
| AAGTGATATTCTTAAATGAG+AGG | 0.602594 | 4.1:+18038988 | MS.gene36510:CDS |
| AGTTAGTAGTACCTGAAGGA+GGG | 0.604029 | 4.1:-18036630 | None:intergenic |
| AGAAACCTGCATGGTTAGAG+AGG | 0.605580 | 4.1:+18036477 | MS.gene36510:CDS |
| ATGGGTGAGACATTCTTTGG+GGG | 0.616331 | 4.1:+18036503 | MS.gene36510:CDS |
| AGTGCAGCAAGAGTTGGCAT+TGG | 0.622670 | 4.1:-18039048 | None:intergenic |
| CACCCAATTGAACCACGTCA+TGG | 0.626928 | 4.1:-18038741 | None:intergenic |
| GAGAGAGAACAGAAATGGAA+GGG | 0.627838 | 4.1:-18039092 | None:intergenic |
| CCTGAAGGAGGGGATGAGAG+GGG | 0.636429 | 4.1:-18036619 | None:intergenic |
| GTGCAGTCAAGGTCATGCAA+AGG | 0.664808 | 4.1:+18039011 | MS.gene36510:CDS |
| AAGTGAATCAGAAACCTGCA+TGG | 0.669083 | 4.1:+18036468 | MS.gene36510:CDS |
| TGAGACAACAGTGCAAACAA+AGG | 0.686217 | 4.1:-18036568 | None:intergenic |
| AAGGTATGTTTACCATGACG+TGG | 0.686416 | 4.1:+18038729 | MS.gene36510:CDS |
| GTTGTGGGGTGAGACATGAG+AGG | 0.704900 | 4.1:+18036404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTATTAT+AGG | + | chr4.1:18037315-18037334 | MS.gene36510:intron | 0.0% |
| !!! | TTAATTTAATTTTTATTTTT+TGG | + | chr4.1:18037361-18037380 | MS.gene36510:intron | 0.0% |
| !! | TGTAATAAAGAATAATTTAA+TGG | + | chr4.1:18037936-18037955 | MS.gene36510:intron | 10.0% |
| !!! | AATTAAGTTTAATTTTGTAA+AGG | + | chr4.1:18037082-18037101 | MS.gene36510:intron | 10.0% |
| !!! | CAAAATAAATATTTTTGTTA+AGG | + | chr4.1:18038253-18038272 | MS.gene36510:intron | 10.0% |
| !!! | CTTAACAAAAATATTTATTT+TGG | - | chr4.1:18038255-18038274 | None:intergenic | 10.0% |
| !!! | GATTTTATTTTATTTTCTTA+AGG | - | chr4.1:18038363-18038382 | None:intergenic | 10.0% |
| !!! | TCTTTATTTATTTTTTTTTC+GGG | + | chr4.1:18037857-18037876 | MS.gene36510:intron | 10.0% |
| !!! | TTATTTTTGATAAATTTGAT+AGG | + | chr4.1:18036925-18036944 | MS.gene36510:intron | 10.0% |
| !! | AATATATAGTTAATCTTACA+CGG | - | chr4.1:18038200-18038219 | None:intergenic | 15.0% |
| !! | AGAAATAATTATATATGAGT+TGG | + | chr4.1:18038927-18038946 | MS.gene36510:intron | 15.0% |
| !! | ATTAACAAACTCTATTTAAT+GGG | - | chr4.1:18037776-18037795 | None:intergenic | 15.0% |
| !! | CAATCTTAATAATATTTCAT+TGG | + | chr4.1:18038403-18038422 | MS.gene36510:intron | 15.0% |
| !! | CAATGAAATATTATTAAGAT+TGG | - | chr4.1:18038405-18038424 | None:intergenic | 15.0% |
| !! | TAAAAATAAAAACTAGAGTT+GGG | - | chr4.1:18037708-18037727 | None:intergenic | 15.0% |
| !! | TGAAAAACAATGATAATTAA+TGG | + | chr4.1:18038880-18038899 | MS.gene36510:intron | 15.0% |
| !!! | AAATATTATTAAGATTGGTT+CGG | - | chr4.1:18038400-18038419 | None:intergenic | 15.0% |
| !!! | AATTTTGTAAAACAACTTAT+AGG | + | chr4.1:18038171-18038190 | MS.gene36510:intron | 15.0% |
| !!! | ATATACTGATATTGATTTTT+GGG | - | chr4.1:18038854-18038873 | None:intergenic | 15.0% |
| !!! | GAATTTTTTGTTTAAACATT+TGG | + | chr4.1:18037118-18037137 | MS.gene36510:intron | 15.0% |
| !!! | TAATTTCTACTTTTATGTTT+TGG | + | chr4.1:18037552-18037571 | MS.gene36510:intron | 15.0% |
| !!! | TATATACTGATATTGATTTT+TGG | - | chr4.1:18038855-18038874 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTCTTAAGGA+AGG | - | chr4.1:18038359-18038378 | None:intergenic | 15.0% |
| !!! | TTTGTTTGAATTTTATAAGA+AGG | - | chr4.1:18037205-18037224 | None:intergenic | 15.0% |
| !! | AAACAATGATAATTAATGGA+TGG | + | chr4.1:18038884-18038903 | MS.gene36510:intron | 20.0% |
| !! | AAGTTTGGTTAATGTTATAT+TGG | - | chr4.1:18037745-18037764 | None:intergenic | 20.0% |
| !! | ACAAAATTATAGTACAAATG+AGG | - | chr4.1:18038621-18038640 | None:intergenic | 20.0% |
| !! | CAAAAAATAAATAGAGTGAT+AGG | - | chr4.1:18038065-18038084 | None:intergenic | 20.0% |
| !! | CAAAATTATAGTACAAATGA+GGG | - | chr4.1:18038620-18038639 | None:intergenic | 20.0% |
| !! | CATTAACAAACTCTATTTAA+TGG | - | chr4.1:18037777-18037796 | None:intergenic | 20.0% |
| !! | CTAAAAATAAAAACTAGAGT+TGG | - | chr4.1:18037709-18037728 | None:intergenic | 20.0% |
| !! | TAGAAATAGAATACTATGTT+AGG | + | chr4.1:18038534-18038553 | MS.gene36510:intron | 20.0% |
| !! | TATTTGCAAATTAATTCATG+TGG | + | chr4.1:18036696-18036715 | MS.gene36510:intron | 20.0% |
| !! | TTTGTGATGATATGTAAATA+TGG | + | chr4.1:18038565-18038584 | MS.gene36510:intron | 20.0% |
| !!! | CAACTCTAGTTTTTATTTTT+AGG | + | chr4.1:18037707-18037726 | MS.gene36510:intron | 20.0% |
| !!! | TAATTATATATGAGTTGGTT+TGG | + | chr4.1:18038932-18038951 | MS.gene36510:intron | 20.0% |
| !!! | TCACTCTATTTATTTTTTGA+AGG | + | chr4.1:18038066-18038085 | MS.gene36510:intron | 20.0% |
| ! | AAAACCAATCATAGACAATT+TGG | - | chr4.1:18036963-18036982 | None:intergenic | 25.0% |
| ! | AAGTGATATTCTTAAATGAG+AGG | + | chr4.1:18038988-18039007 | MS.gene36510:CDS | 25.0% |
| ! | AATTGGAAGACCATATATAT+AGG | - | chr4.1:18036825-18036844 | None:intergenic | 25.0% |
| ! | ACAGAAAAATAAAGGAAATC+TGG | - | chr4.1:18037233-18037252 | None:intergenic | 25.0% |
| ! | AGAATAAAGTAATGATCCAA+AGG | - | chr4.1:18036776-18036795 | None:intergenic | 25.0% |
| ! | AGTGATATTCTTAAATGAGA+GGG | + | chr4.1:18038989-18039008 | MS.gene36510:CDS | 25.0% |
| ! | ATAATGTGTGACAATAATTG+AGG | + | chr4.1:18038673-18038692 | MS.gene36510:intron | 25.0% |
| ! | CAATTATTGTCACACATTAT+TGG | - | chr4.1:18038673-18038692 | None:intergenic | 25.0% |
| ! | GAAATTAATCATACAAGACA+TGG | - | chr4.1:18037539-18037558 | None:intergenic | 25.0% |
| ! | TAATGGGATAAATCAAAGTT+TGG | - | chr4.1:18037760-18037779 | None:intergenic | 25.0% |
| ! | TACTAACTTAACTTCTGTTA+TGG | + | chr4.1:18036645-18036664 | MS.gene36510:intron | 25.0% |
| ! | TATTTGTTTGACCTGAATAT+AGG | - | chr4.1:18038791-18038810 | None:intergenic | 25.0% |
| ! | TTTCATTTGGAGATGATTAA+AGG | - | chr4.1:18037893-18037912 | None:intergenic | 25.0% |
| ! | TTTCGAGAAAAAGAATTTGA+AGG | - | chr4.1:18037031-18037050 | None:intergenic | 25.0% |
| !!! | AGATTTCCTTTATTTTTCTG+TGG | + | chr4.1:18037232-18037251 | MS.gene36510:intron | 25.0% |
| !!! | GATTTCCTTTATTTTTCTGT+GGG | + | chr4.1:18037233-18037252 | MS.gene36510:intron | 25.0% |
| !!! | TGAAGGAAGTATTTAGAAAT+AGG | - | chr4.1:18037014-18037033 | None:intergenic | 25.0% |
| AAAAAGGGATCTTCCATTAA+TGG | - | chr4.1:18037586-18037605 | None:intergenic | 30.0% | |
| AAAAGGGATCTTCCATTAAT+GGG | - | chr4.1:18037585-18037604 | None:intergenic | 30.0% | |
| AAAGGAAAAGAAACATCCAA+AGG | - | chr4.1:18036758-18036777 | None:intergenic | 30.0% | |
| AATGAAATGTGACAGTTTCT+GGG | - | chr4.1:18038445-18038464 | None:intergenic | 30.0% | |
| AGAAAGACAGAAGAAGAATT+TGG | - | chr4.1:18037660-18037679 | None:intergenic | 30.0% | |
| AGGGGAAATTGGATAAAAAA+AGG | - | chr4.1:18037602-18037621 | None:intergenic | 30.0% | |
| ATATGGTCTTCCAATTAATG+AGG | + | chr4.1:18036829-18036848 | MS.gene36510:intron | 30.0% | |
| CAAACACAATGAGACAAAAT+TGG | - | chr4.1:18037448-18037467 | None:intergenic | 30.0% | |
| GAAAGACAGAAGAAGAATTT+GGG | - | chr4.1:18037659-18037678 | None:intergenic | 30.0% | |
| GGGGAAATTGGATAAAAAAA+GGG | - | chr4.1:18037601-18037620 | None:intergenic | 30.0% | |
| GTTCAAAAGACCTCATTAAT+TGG | - | chr4.1:18036842-18036861 | None:intergenic | 30.0% | |
| GTTTGTCTCAAATTAGAAGT+CGG | + | chr4.1:18037994-18038013 | MS.gene36510:intron | 30.0% | |
| TTCAGATGCACCTATATATA+TGG | + | chr4.1:18036812-18036831 | MS.gene36510:intron | 30.0% | |
| TTCTCGAAATCTTTCTACTA+CGG | + | chr4.1:18037042-18037061 | MS.gene36510:intron | 30.0% | |
| TTTGCCAAATTGTCTATGAT+TGG | + | chr4.1:18036956-18036975 | MS.gene36510:intron | 30.0% | |
| ! | AAACTTTTATAACCTGGTAC+AGG | - | chr4.1:18037978-18037997 | None:intergenic | 30.0% |
| ! | ACATGGATTTATGCTTTGTT+TGG | + | chr4.1:18036986-18037005 | MS.gene36510:intron | 30.0% |
| ! | ATCGACTCCAAAATTTCAAA+GGG | + | chr4.1:18036673-18036692 | MS.gene36510:intron | 30.0% |
| ! | TGAGACAAACTTTTATAACC+TGG | - | chr4.1:18037984-18038003 | None:intergenic | 30.0% |
| ! | TTTGGATGTTTCTTTTCCTT+TGG | + | chr4.1:18036757-18036776 | MS.gene36510:intron | 30.0% |
| ! | TTTGGTTTCTTTCCCATTAA+TGG | + | chr4.1:18037570-18037589 | MS.gene36510:intron | 30.0% |
| !! | ATATATGAGTTGGTTTGGAA+TGG | + | chr4.1:18038937-18038956 | MS.gene36510:intron | 30.0% |
| !! | TATCGACTCCAAAATTTCAA+AGG | + | chr4.1:18036672-18036691 | MS.gene36510:intron | 30.0% |
| !! | TATTATTAAGATTGGTTCGG+TGG | - | chr4.1:18038397-18038416 | None:intergenic | 30.0% |
| !!! | CTATGATTGGTTTTATGACA+TGG | + | chr4.1:18036969-18036988 | MS.gene36510:intron | 30.0% |
| !!! | GCAAATACCCTTTGAAATTT+TGG | - | chr4.1:18036683-18036702 | None:intergenic | 30.0% |
| !!! | TAGCACTTCTTTTTTTCCTT+TGG | + | chr4.1:18036739-18036758 | MS.gene36510:intron | 30.0% |
| !!! | TGGTTTTCTAGAATTGACAA+GGG | + | chr4.1:18037381-18037400 | MS.gene36510:intron | 30.0% |
| !!! | TTGAAATTTTGGAGTCGATA+AGG | - | chr4.1:18036672-18036691 | None:intergenic | 30.0% |
| !!! | TTGGTTTTCTAGAATTGACA+AGG | + | chr4.1:18037380-18037399 | MS.gene36510:intron | 30.0% |
| !!! | TTTTCCACTTTTTGTTTTCC+AGG | + | chr4.1:18037505-18037524 | MS.gene36510:intron | 30.0% |
| AAAAACTAGAGTTGGGAAGT+AGG | - | chr4.1:18037701-18037720 | None:intergenic | 35.0% | |
| AAAACTAGAGTTGGGAAGTA+GGG | - | chr4.1:18037700-18037719 | None:intergenic | 35.0% | |
| AAGCATCAACAGTGATATCT+GGG | - | chr4.1:18037477-18037496 | None:intergenic | 35.0% | |
| AAGCTTTCGCTTTCAATGAA+AGG | - | chr4.1:18037633-18037652 | None:intergenic | 35.0% | |
| ATGCAGCCATATACGATTAA+CGG | + | chr4.1:18038960-18038979 | MS.gene36510:intron | 35.0% | |
| CATTTGGAGATGATTAAAGG+TGG | - | chr4.1:18037890-18037909 | None:intergenic | 35.0% | |
| CGAATCCCACAGAAAAATAA+AGG | - | chr4.1:18037241-18037260 | None:intergenic | 35.0% | |
| GAATGAAATGTGACAGTTTC+TGG | - | chr4.1:18038446-18038465 | None:intergenic | 35.0% | |
| GTTAAGTTAGTAGTACCTGA+AGG | - | chr4.1:18036637-18036656 | None:intergenic | 35.0% | |
| TAAGCATCAACAGTGATATC+TGG | - | chr4.1:18037478-18037497 | None:intergenic | 35.0% | |
| ! | CTGTCTTTCTACTTCAAGTT+TGG | + | chr4.1:18037670-18037689 | MS.gene36510:intron | 35.0% |
| ! | TAATGGGTGAGACATTCTTT+GGG | + | chr4.1:18036501-18036520 | MS.gene36510:CDS | 35.0% |
| ! | TGTTCTTTTCGTTCTTCCTT+TGG | - | chr4.1:18036547-18036566 | None:intergenic | 35.0% |
| ! | TTAATGGGTGAGACATTCTT+TGG | + | chr4.1:18036500-18036519 | MS.gene36510:CDS | 35.0% |
| AAGGTATGTTTACCATGACG+TGG | + | chr4.1:18038729-18038748 | MS.gene36510:CDS | 40.0% | |
| AAGTGAATCAGAAACCTGCA+TGG | + | chr4.1:18036468-18036487 | MS.gene36510:CDS | 40.0% | |
| AAGTTAGTAGTACCTGAAGG+AGG | - | chr4.1:18036634-18036653 | None:intergenic | 40.0% | |
| AATGGGTGAGACATTCTTTG+GGG | + | chr4.1:18036502-18036521 | MS.gene36510:CDS | 40.0% | |
| AATTGGTCACTAGTGTCTAG+TGG | - | chr4.1:18037431-18037450 | None:intergenic | 40.0% | |
| AGTTAGTAGTACCTGAAGGA+GGG | - | chr4.1:18036633-18036652 | None:intergenic | 40.0% | |
| ATTAACCTCTCTAACCATGC+AGG | - | chr4.1:18036485-18036504 | None:intergenic | 40.0% | |
| GAGAGAGAACAGAAATGGAA+GGG | - | chr4.1:18039095-18039114 | None:intergenic | 40.0% | |
| GCATGGTTAGAGAGGTTAAT+GGG | + | chr4.1:18036485-18036504 | MS.gene36510:CDS | 40.0% | |
| TACCATGACGTGGTTCAATT+GGG | + | chr4.1:18038739-18038758 | MS.gene36510:CDS | 40.0% | |
| TCAATGAAAGGAACGTTGCA+GGG | - | chr4.1:18037621-18037640 | None:intergenic | 40.0% | |
| TGAGACAACAGTGCAAACAA+AGG | - | chr4.1:18036571-18036590 | None:intergenic | 40.0% | |
| TGAGAGAGAACAGAAATGGA+AGG | - | chr4.1:18039096-18039115 | None:intergenic | 40.0% | |
| TGCATGAGAGAGAACAGAAA+TGG | - | chr4.1:18039100-18039119 | None:intergenic | 40.0% | |
| TGCATGGTTAGAGAGGTTAA+TGG | + | chr4.1:18036484-18036503 | MS.gene36510:CDS | 40.0% | |
| TTACCATGACGTGGTTCAAT+TGG | + | chr4.1:18038738-18038757 | MS.gene36510:CDS | 40.0% | |
| TTCAATGAAAGGAACGTTGC+AGG | - | chr4.1:18037622-18037641 | None:intergenic | 40.0% | |
| TTCGCACCGTTAATCGTATA+TGG | - | chr4.1:18038969-18038988 | None:intergenic | 40.0% | |
| TTGGAGATGATTAAAGGTGG+AGG | - | chr4.1:18037887-18037906 | None:intergenic | 40.0% | |
| ! | AAATGAGGGTATGAGTAAGC+AGG | - | chr4.1:18038606-18038625 | None:intergenic | 40.0% |
| ! | AAGGAGTGTGAGAGTTAAAG+AGG | - | chr4.1:18038340-18038359 | None:intergenic | 40.0% |
| ! | AGGAGTGTGAGAGTTAAAGA+GGG | - | chr4.1:18038339-18038358 | None:intergenic | 40.0% |
| ! | CATCGATTGCTCCTATATTC+AGG | + | chr4.1:18038777-18038796 | MS.gene36510:CDS | 40.0% |
| ! | CTTTTATAACCTGGTACAGG+AGG | - | chr4.1:18037975-18037994 | None:intergenic | 40.0% |
| !! | TTCTAGAATTGACAAGGGCT+TGG | + | chr4.1:18037386-18037405 | MS.gene36510:intron | 40.0% |
| !!! | CCACTTTTTGTTTTCCAGGA+GGG | + | chr4.1:18037509-18037528 | MS.gene36510:intron | 40.0% |
| !!! | CGTTCTTCCTTTGGTTTTTG+TGG | - | chr4.1:18036538-18036557 | None:intergenic | 40.0% |
| !!! | TCCACTTTTTGTTTTCCAGG+AGG | + | chr4.1:18037508-18037527 | MS.gene36510:intron | 40.0% |
| ACCTTCTCACCTGCACAATA+TGG | - | chr4.1:18038714-18038733 | None:intergenic | 45.0% | |
| AGAAACCTGCATGGTTAGAG+AGG | + | chr4.1:18036477-18036496 | MS.gene36510:CDS | 45.0% | |
| ATGGGTGAGACATTCTTTGG+GGG | + | chr4.1:18036503-18036522 | MS.gene36510:CDS | 45.0% | |
| CAATGAAAGGAACGTTGCAG+GGG | - | chr4.1:18037620-18037639 | None:intergenic | 45.0% | |
| CACTTGTGACAGGATTCTTC+AGG | + | chr4.1:18039067-18039086 | MS.gene36510:CDS | 45.0% | |
| CCCTCCTGGAAAACAAAAAG+TGG | - | chr4.1:18037512-18037531 | None:intergenic | 45.0% | |
| CTATTGCTGCCATATTGTGC+AGG | + | chr4.1:18038702-18038721 | MS.gene36510:intron | 45.0% | |
| CTCCCTTTGCTTCTGATGAT+GGG | - | chr4.1:18036442-18036461 | None:intergenic | 45.0% | |
| GACCCATCATCAGAAGCAAA+GGG | + | chr4.1:18036437-18036456 | MS.gene36510:CDS | 45.0% | |
| GTTAGTAGTACCTGAAGGAG+GGG | - | chr4.1:18036632-18036651 | None:intergenic | 45.0% | |
| TCTCCCTTTGCTTCTGATGA+TGG | - | chr4.1:18036443-18036462 | None:intergenic | 45.0% | |
| TGACCCATCATCAGAAGCAA+AGG | + | chr4.1:18036436-18036455 | MS.gene36510:CDS | 45.0% | |
| ! | AGACATTCTTTGGGGGTTGT+GGG | + | chr4.1:18036510-18036529 | MS.gene36510:CDS | 45.0% |
| ! | TAAATGAGAGGGTGCAGTCA+AGG | + | chr4.1:18039000-18039019 | MS.gene36510:CDS | 45.0% |
| !! | TTTATAATATTACATAAATA+TGG | - | chr4.1:18037812-18037831 | None:intergenic | 5.0% |
| !!! | AAAATAAATATTTTTGTTAA+GGG | + | chr4.1:18038254-18038273 | MS.gene36510:intron | 5.0% |
| !!! | AATTAATTTAAATTTTCATT+TGG | - | chr4.1:18037906-18037925 | None:intergenic | 5.0% |
| !!! | ATCTTTATTTATTTTTTTTT+CGG | + | chr4.1:18037856-18037875 | MS.gene36510:intron | 5.0% |
| ACTCTTGCTGCACTTGTGAC+AGG | + | chr4.1:18039057-18039076 | MS.gene36510:CDS | 50.0% | |
| AGGAACGTTGCAGGGGAAAT+TGG | - | chr4.1:18037613-18037632 | None:intergenic | 50.0% | |
| AGTGCAGCAAGAGTTGGCAT+TGG | - | chr4.1:18039051-18039070 | None:intergenic | 50.0% | |
| CACCCAATTGAACCACGTCA+TGG | - | chr4.1:18038744-18038763 | None:intergenic | 50.0% | |
| GCCATATTGTGCAGGTGAGA+AGG | + | chr4.1:18038710-18038729 | MS.gene36510:intron | 50.0% | |
| GTCACAAGTGCAGCAAGAGT+TGG | - | chr4.1:18039057-18039076 | None:intergenic | 50.0% | |
| GTGCAGTCAAGGTCATGCAA+AGG | + | chr4.1:18039011-18039030 | MS.gene36510:CDS | 50.0% | |
| GTGGGGTCCACAAAAACCAA+AGG | + | chr4.1:18036528-18036547 | MS.gene36510:CDS | 50.0% | |
| TCACTAGTGTCTAGTGGTGG+TGG | - | chr4.1:18037425-18037444 | None:intergenic | 50.0% | |
| TGGTCACTAGTGTCTAGTGG+TGG | - | chr4.1:18037428-18037447 | None:intergenic | 50.0% | |
| ! | GACATTCTTTGGGGGTTGTG+GGG | + | chr4.1:18036511-18036530 | MS.gene36510:CDS | 50.0% |
| ! | GAGACATTCTTTGGGGGTTG+TGG | + | chr4.1:18036509-18036528 | MS.gene36510:CDS | 50.0% |
| ACCTGAAGGAGGGGATGAGA+GGG | - | chr4.1:18036623-18036642 | None:intergenic | 55.0% | |
| CAAGACATGGTGAACCCTCC+TGG | - | chr4.1:18037526-18037545 | None:intergenic | 55.0% | |
| GGTGAGAAGGGAGACAGTGA+GGG | - | chr4.1:18036601-18036620 | None:intergenic | 55.0% | |
| TACCTGAAGGAGGGGATGAG+AGG | - | chr4.1:18036624-18036643 | None:intergenic | 55.0% | |
| TCTTGCACTCCTCCTGTACC+AGG | + | chr4.1:18037963-18037982 | MS.gene36510:intron | 55.0% | |
| AGGGAGACAGTGAGGGCAGA+TGG | - | chr4.1:18036594-18036613 | None:intergenic | 60.0% | |
| AGGGGATGAGAGGGGTGAGA+AGG | - | chr4.1:18036614-18036633 | None:intergenic | 60.0% | |
| CCTGAAGGAGGGGATGAGAG+GGG | - | chr4.1:18036622-18036641 | None:intergenic | 60.0% | |
| GGGGATGAGAGGGGTGAGAA+GGG | - | chr4.1:18036613-18036632 | None:intergenic | 60.0% | |
| GGGTGAGAAGGGAGACAGTG+AGG | - | chr4.1:18036602-18036621 | None:intergenic | 60.0% | |
| CCCCTCTCATCCCCTCCTTC+AGG | + | chr4.1:18036619-18036638 | MS.gene36510:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18036419 | 18039121 | 18036419 | ID=MS.gene36510 |
| chr4.1 | mRNA | 18036419 | 18039121 | 18036419 | ID=MS.gene36510.t1;Parent=MS.gene36510 |
| chr4.1 | exon | 18036419 | 18036640 | 18036419 | ID=MS.gene36510.t1.exon1;Parent=MS.gene36510.t1 |
| chr4.1 | CDS | 18036419 | 18036640 | 18036419 | ID=cds.MS.gene36510.t1;Parent=MS.gene36510.t1 |
| chr4.1 | exon | 18038724 | 18038798 | 18038724 | ID=MS.gene36510.t1.exon2;Parent=MS.gene36510.t1 |
| chr4.1 | CDS | 18038724 | 18038798 | 18038724 | ID=cds.MS.gene36510.t1;Parent=MS.gene36510.t1 |
| chr4.1 | exon | 18038966 | 18039121 | 18038966 | ID=MS.gene36510.t1.exon3;Parent=MS.gene36510.t1 |
| chr4.1 | CDS | 18038966 | 18039121 | 18038966 | ID=cds.MS.gene36510.t1;Parent=MS.gene36510.t1 |
| Gene Sequence |
| Protein sequence |
