AlfalfaGEDB | MS.gene36556

M. sativa cultivar XinJiangDaYe / MS.gene36556

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36556.t1	XP_024627596.1	97.1	209	6	0	1	209	10	218	9.70E-95	356.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36556.t1	O82155	51.5	134	62	1	2	132	24	157	2.1e-29	130.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36556.t1	G8A2U0	97.1	209	6	0	1	209	10	218	7.0e-95	356.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene36556.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36556.t1	MTR_8g015840	97.129	209	6	0	1	209	10	218	2.09e-151	419
MS.gene36556.t1	MTR_8g079060	56.667	120	50	2	6	123	24	143	2.36e-36	127
MS.gene36556.t1	MTR_2g096740	51.145	131	57	3	6	134	57	182	8.76e-36	127
MS.gene36556.t1	MTR_2g096740	51.145	131	57	3	6	134	72	197	1.31e-35	127
MS.gene36556.t1	MTR_4g063780	61.628	86	32	1	6	91	70	154	6.64e-32	118
MS.gene36556.t1	MTR_1g115590	56.716	134	26	3	1	134	10	111	1.60e-31	112
MS.gene36556.t1	MTR_7g082600	57.812	128	22	3	1	128	1	96	1.41e-30	109
MS.gene36556.t1	MTR_8g479350	81.818	55	10	0	8	62	65	119	2.17e-30	114
MS.gene36556.t1	MTR_7g024670	75.385	65	16	0	12	76	78	142	2.97e-30	114
MS.gene36556.t1	MTR_2g059540	50.000	122	47	2	11	126	31	144	5.33e-30	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36556.t1	AT1G51700	57.664	137	51	2	2	133	24	158	1.21e-45	150
MS.gene36556.t1	AT3G21270	51.007	149	63	4	11	149	29	177	2.33e-33	119
MS.gene36556.t1	AT5G60850	64.368	87	27	1	7	93	47	129	7.93e-33	120
MS.gene36556.t1	AT3G50410	73.973	73	13	2	1	67	14	86	8.30e-33	119
MS.gene36556.t1	AT5G66940	70.423	71	21	0	7	77	28	98	2.06e-32	117
MS.gene36556.t1	AT5G60200	59.302	86	33	1	6	89	50	135	1.20e-30	113
MS.gene36556.t1	AT3G45610	68.831	77	20	3	2	76	32	106	2.49e-30	112
MS.gene36556.t1	AT1G07640	73.438	64	17	0	6	69	16	79	2.55e-30	113
MS.gene36556.t1	AT1G07640	73.438	64	17	0	6	69	72	135	4.74e-30	113
MS.gene36556.t1	AT5G65590	69.014	71	21	1	7	76	37	107	5.87e-30	113

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Find 59 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATTGGACTAAAGG+TGG	0.614735	8.4:+75597789	MS.gene36556:CDS
AAAATGGTGGTTCAAACTGT+TGG	0.566836	8.4:+75598213	MS.gene36556:CDS
AAATGGGTCGGGTTTGAAAA+TGG	0.305819	8.4:+75598079	MS.gene36556:CDS
AACTGTTGGAATGATAATCA+TGG	0.536064	8.4:+75598227	MS.gene36556:CDS
ACCCAGATTCATGTTGACCC+GGG	0.637927	8.4:+75597972	MS.gene36556:CDS
ACCCGGGTCAACATGAATCT+GGG	0.549644	8.4:-75597973	None:intergenic
ACGGATTTGGGTCATAACCC+GGG	0.629532	8.4:+75598152	MS.gene36556:CDS
AGATGGTGTTGTTGAACGTT+TGG	0.432656	8.4:-75597874	None:intergenic
AGGAACATACCAGTTGGTGG+TGG	0.578156	8.4:+75597819	MS.gene36556:CDS
AGGTCTGAATTCAAATGGGT+CGG	0.529995	8.4:+75598067	MS.gene36556:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATATTGGACTAAAGG+TGG	+	chr8.4:75597789-75597808	MS.gene36556:CDS	30.0%
AACTGTTGGAATGATAATCA+TGG	+	chr8.4:75598227-75598246	MS.gene36556:CDS	30.0%
GCAAAAACTGCAAAAGATAT+TGG	+	chr8.4:75597778-75597797	MS.gene36556:CDS	30.0%
TGCAAAAGATATTGGACTAA+AGG	+	chr8.4:75597786-75597805	MS.gene36556:CDS	30.0%
TTGAAGGTCTGAATTCAAAT+GGG	+	chr8.4:75598063-75598082	MS.gene36556:CDS	30.0%
TTGAATTCAGACCTTCAAAA+AGG	-	chr8.4:75598061-75598080	None:intergenic	30.0%
TTTGAAGGTCTGAATTCAAA+TGG	+	chr8.4:75598062-75598081	MS.gene36556:CDS	30.0%
AAAATGGTGGTTCAAACTGT+TGG	+	chr8.4:75598213-75598232	MS.gene36556:CDS	35.0%
GTTGGAATGATAATCATGGT+TGG	+	chr8.4:75598231-75598250	MS.gene36556:CDS	35.0%
AAATGGGTCGGGTTTGAAAA+TGG	+	chr8.4:75598079-75598098	MS.gene36556:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	75597666	75598295	75597666	ID=MS.gene36556
chr8.4	mRNA	75597666	75598295	75597666	ID=MS.gene36556.t1;Parent=MS.gene36556
chr8.4	exon	75597666	75598295	75597666	ID=MS.gene36556.t1.exon1;Parent=MS.gene36556.t1
chr8.4	CDS	75597666	75598295	75597666	ID=cds.MS.gene36556.t1;Parent=MS.gene36556.t1

Gene Sequence

>MS.gene36556

ATGAAACCAAATTTTCCAGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAGCAACACAAAATTCTGCTACTACAACAACTACAATCTCTCACAACCACGCCATTTTTGCAAAAACTGCAAAAGATATTGGACTAAAGGTGGTGCTTTAAGGAACATACCAGTTGGTGGTGGAACAAGAAAAGTGACAAAACGTTCATCAAATTCCAAACGTTCAACAACACCATCTTCATCTTCTCCATCAGCATCAACCACCAGTTCTTCAGCAGCAAAAGTTTCAGCTTCAGTTTCAGAAACTGACCCGACCCAGATTCATGTTGACCCGGGTGAGAGGAATTTTGGTGGGGGGAGTTTTAGTTCACTTCTTGCATCAACTGAGCGATTTGGGAACCTTTTTGAAGGTCTGAATTCAAATGGGTCGGGTTTGAAAATGGTGGAAATGGGTGAATTTGGTGAGAATTTGAACTGTGACCCGGTTGTGAATACGGATTTGGGTCATAACCCGGGTGGTAGAAATGGGGAATCAGAGATCTTTCTTGGTTTGCAAAATGGTGGTTCAAACTGTTGGAATGATAATCATGGTTGGTCTGATCTTGCTATATACACTCCTAGGTCAACTTATCAGTAG

Protein sequence

>MS.gene36556.t1

MKPNFPEQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGTRKVTKRSSNSKRSTTPSSSSPSASTTSSSAAKVSASVSETDPTQIHVDPGERNFGGGSFSSLLASTERFGNLFEGLNSNGSGLKMVEMGEFGENLNCDPVVNTDLGHNPGGRNGESEIFLGLQNGGSNCWNDNHGWSDLAIYTPRSTYQ