Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36579.t1 | XP_013444240.1 | 96.8 | 431 | 10 | 2 | 1 | 428 | 1 | 430 | 5.40E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36579.t1 | Q8S3D2 | 47.5 | 318 | 123 | 12 | 110 | 418 | 72 | 354 | 5.2e-51 | 203.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36579.t1 | A0A072TLG8 | 96.8 | 431 | 10 | 2 | 1 | 428 | 1 | 430 | 3.9e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene36579.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36579.t1 | MTR_8g015450 | 96.752 | 431 | 10 | 2 | 1 | 428 | 1 | 430 | 0.0 | 860 |
| MS.gene36579.t1 | MTR_2g100490 | 49.127 | 458 | 111 | 21 | 1 | 416 | 1 | 378 | 1.10e-96 | 295 |
| MS.gene36579.t1 | MTR_3g101810 | 46.528 | 144 | 59 | 2 | 271 | 400 | 103 | 242 | 4.12e-36 | 134 |
| MS.gene36579.t1 | MTR_8g093500 | 64.948 | 97 | 28 | 2 | 298 | 393 | 87 | 178 | 8.36e-36 | 133 |
| MS.gene36579.t1 | MTR_5g017210 | 62.626 | 99 | 33 | 1 | 297 | 395 | 109 | 203 | 1.19e-27 | 110 |
| MS.gene36579.t1 | MTR_7g069590 | 56.923 | 65 | 28 | 0 | 335 | 399 | 32 | 96 | 1.01e-19 | 85.9 |
| MS.gene36579.t1 | MTR_5g079500 | 60.714 | 56 | 22 | 0 | 336 | 391 | 225 | 280 | 7.43e-17 | 81.3 |
| MS.gene36579.t1 | MTR_1g018090 | 60.714 | 56 | 22 | 0 | 338 | 393 | 283 | 338 | 7.86e-17 | 82.0 |
| MS.gene36579.t1 | MTR_1g106460 | 48.000 | 75 | 39 | 0 | 319 | 393 | 228 | 302 | 9.02e-16 | 78.6 |
| MS.gene36579.t1 | MTR_5g005110 | 53.448 | 58 | 27 | 0 | 336 | 393 | 231 | 288 | 3.25e-15 | 76.6 |
| MS.gene36579.t1 | MTR_1g106470 | 53.448 | 58 | 27 | 0 | 336 | 393 | 203 | 260 | 8.14e-15 | 75.1 |
| MS.gene36579.t1 | MTR_3g103030 | 49.231 | 65 | 33 | 0 | 329 | 393 | 229 | 293 | 2.26e-14 | 73.9 |
| MS.gene36579.t1 | MTR_1g060700 | 48.649 | 74 | 36 | 1 | 321 | 394 | 341 | 412 | 7.09e-14 | 73.6 |
| MS.gene36579.t1 | MTR_4g131160 | 55.357 | 56 | 25 | 0 | 336 | 391 | 206 | 261 | 1.52e-13 | 72.4 |
| MS.gene36579.t1 | MTR_4g131160 | 55.357 | 56 | 25 | 0 | 336 | 391 | 203 | 258 | 1.59e-13 | 72.4 |
| MS.gene36579.t1 | MTR_2g067000 | 47.887 | 71 | 33 | 1 | 324 | 394 | 156 | 222 | 1.60e-13 | 71.2 |
| MS.gene36579.t1 | MTR_1g080890 | 55.357 | 56 | 25 | 0 | 336 | 391 | 200 | 255 | 3.00e-13 | 71.2 |
| MS.gene36579.t1 | MTR_1g106480 | 50.980 | 51 | 25 | 0 | 341 | 391 | 81 | 131 | 2.56e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36579.t1 | AT3G21330 | 48.428 | 318 | 123 | 12 | 110 | 416 | 72 | 359 | 1.33e-70 | 228 |
| MS.gene36579.t1 | AT4G00120 | 54.386 | 114 | 45 | 3 | 301 | 413 | 88 | 195 | 2.98e-31 | 119 |
| MS.gene36579.t1 | AT3G50330 | 62.105 | 95 | 32 | 1 | 298 | 392 | 92 | 182 | 1.26e-25 | 104 |
| MS.gene36579.t1 | AT5G09750 | 65.263 | 95 | 27 | 2 | 298 | 391 | 92 | 181 | 1.87e-25 | 103 |
| MS.gene36579.t1 | AT5G67060 | 61.053 | 95 | 33 | 1 | 298 | 392 | 83 | 173 | 2.18e-25 | 103 |
| MS.gene36579.t1 | AT5G67060 | 61.053 | 95 | 33 | 1 | 298 | 392 | 95 | 185 | 3.06e-25 | 103 |
| MS.gene36579.t1 | AT5G01305 | 59.677 | 62 | 25 | 0 | 327 | 388 | 35 | 96 | 1.57e-19 | 85.9 |
| MS.gene36579.t1 | AT5G43175 | 47.059 | 68 | 36 | 0 | 326 | 393 | 129 | 196 | 6.60e-16 | 77.0 |
| MS.gene36579.t1 | AT5G37800 | 53.846 | 65 | 30 | 0 | 327 | 391 | 199 | 263 | 7.94e-16 | 78.2 |
| MS.gene36579.t1 | AT1G66470 | 50.000 | 68 | 34 | 0 | 324 | 391 | 190 | 257 | 1.00e-15 | 77.8 |
| MS.gene36579.t1 | AT4G33880 | 51.562 | 64 | 31 | 0 | 330 | 393 | 267 | 330 | 1.27e-15 | 78.2 |
| MS.gene36579.t1 | AT2G14760 | 51.562 | 64 | 31 | 0 | 330 | 393 | 238 | 301 | 1.52e-15 | 77.8 |
| MS.gene36579.t1 | AT4G30980 | 49.367 | 79 | 37 | 2 | 325 | 400 | 125 | 203 | 5.52e-15 | 75.9 |
| MS.gene36579.t1 | AT2G24260 | 57.143 | 56 | 24 | 0 | 336 | 391 | 42 | 97 | 9.26e-15 | 74.3 |
| MS.gene36579.t1 | AT4G30980 | 49.367 | 79 | 37 | 2 | 325 | 400 | 173 | 251 | 1.12e-14 | 75.5 |
| MS.gene36579.t1 | AT1G27740 | 47.059 | 68 | 36 | 0 | 326 | 393 | 164 | 231 | 1.43e-14 | 73.9 |
| MS.gene36579.t1 | AT2G24260 | 57.143 | 56 | 24 | 0 | 336 | 391 | 145 | 200 | 2.39e-14 | 74.3 |
| MS.gene36579.t1 | AT5G58010 | 41.111 | 90 | 44 | 2 | 323 | 403 | 92 | 181 | 6.59e-14 | 72.4 |
| MS.gene36579.t1 | AT2G14760 | 42.857 | 77 | 31 | 1 | 330 | 393 | 238 | 314 | 2.23e-12 | 68.2 |
Find 61 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGTGCTATTGCTTC+TGG | 0.163364 | 8.4:-75966967 | None:intergenic |
| AAAGAATAAGTGAAAGAATT+AGG | 0.176959 | 8.4:+75967130 | MS.gene36579:CDS |
| GCATTTAGACCAGTGAATTT+TGG | 0.189702 | 8.4:+75967012 | MS.gene36579:CDS |
| TATCCATGGATGGTCTAAAT+TGG | 0.204516 | 8.4:+75966080 | None:intergenic |
| CAACACATTGATGATGAATT+TGG | 0.223534 | 8.4:-75966919 | None:intergenic |
| TGAAATGATTGAGGTATTAA+AGG | 0.270091 | 8.4:-75966334 | None:intergenic |
| GTTAAGGCACTTGAAAGTTT+AGG | 0.322532 | 8.4:+75967246 | MS.gene36579:CDS |
| AAGAATAAGTGAAAGAATTA+GGG | 0.351830 | 8.4:+75967131 | MS.gene36579:CDS |
| GAGATGCATAAAGTTCAAAT+TGG | 0.386265 | 8.4:+75966202 | MS.gene36579:CDS |
| TGTACCTGGTGGAAGCAAAA+TGG | 0.387485 | 8.4:+75967167 | MS.gene36579:CDS |
| ATCTTAACATTCTTCCTCTT+AGG | 0.391471 | 8.4:-75967066 | None:intergenic |
| TGTCTTGCAGCAACAGTTTG+TGG | 0.403895 | 8.4:-75967099 | None:intergenic |
| CAAGGTCCCTTATCACATCT+TGG | 0.412458 | 8.4:-75966871 | None:intergenic |
| TGGTGGGCCATGTTGAAATC+TGG | 0.417693 | 8.4:-75966391 | None:intergenic |
| AAAGAGAAAGCAATACTAGT+TGG | 0.418809 | 8.4:-75967297 | None:intergenic |
| GAGTGAGGATTATGATTACT+AGG | 0.423589 | 8.4:-75967339 | None:intergenic |
| CATAATTCTTCACCTGTTGA+AGG | 0.428854 | 8.4:+75966805 | MS.gene36579:CDS |
| CTGTTGCTGCAAGACATAGA+AGG | 0.446002 | 8.4:+75967106 | MS.gene36579:CDS |
| ATCCATGGATGGTCTAAATT+GGG | 0.452946 | 8.4:+75966081 | None:intergenic |
| TGTTGAGTACTCCACAAGAT+TGG | 0.454815 | 8.4:-75966130 | None:intergenic |
| AGTCTAAAGCCACCTTCAAC+AGG | 0.457555 | 8.4:-75966817 | None:intergenic |
| TAAAGGTTCTTCTCTCCAGC+TGG | 0.468965 | 8.4:-75966317 | None:intergenic |
| ATTCTGATTGAAGGTGTGTC+TGG | 0.471321 | 8.4:-75966652 | None:intergenic |
| AAATCTGGCATAATGTTGTA+AGG | 0.495981 | 8.4:-75966376 | None:intergenic |
| AGGTAACAAAGTTAATGCTA+TGG | 0.507469 | 8.4:+75967266 | MS.gene36579:CDS |
| TGTTGTGAAAGATTTGTGTT+TGG | 0.510255 | 8.4:-75966256 | None:intergenic |
| TCTGTTGAAAATGATAATGA+TGG | 0.512969 | 8.4:+75966487 | MS.gene36579:CDS |
| TAATCATAATCCTCACTCAC+AGG | 0.514322 | 8.4:+75967344 | MS.gene36579:CDS |
| GTAAGGTCTACTGTCTGAAA+AGG | 0.516969 | 8.4:-75966359 | None:intergenic |
| AGAAGCAATAGCACAAATGA+AGG | 0.517584 | 8.4:+75966969 | MS.gene36579:CDS |
| AGTAACACAGCAACCTCCTC+AGG | 0.518382 | 8.4:+75966562 | MS.gene36579:CDS |
| AGGATTATGATTACTAGGGA+TGG | 0.519072 | 8.4:-75967334 | None:intergenic |
| AACAATCTCTCAAAGTTCCT+CGG | 0.520026 | 8.4:+75966738 | MS.gene36579:CDS |
| TTACTAGGGATGGGAAAAGA+AGG | 0.524109 | 8.4:-75967324 | None:intergenic |
| AATCAAAAGCTGGATCCAGC+TGG | 0.531706 | 8.4:+75966302 | MS.gene36579:CDS |
| ATGAAAGTGAAATCAAAAGC+TGG | 0.539625 | 8.4:+75966292 | MS.gene36579:CDS |
| ATCCCAATTTAGACCATCCA+TGG | 0.539878 | 8.4:-75966083 | None:intergenic |
| GCACTGACAATTCTGATTGA+AGG | 0.540825 | 8.4:-75966661 | None:intergenic |
| GTTTCATCAAATTCATTGAG+TGG | 0.542529 | 8.4:-75966718 | None:intergenic |
| TCATCCATTCCAAAATTCAC+TGG | 0.545940 | 8.4:-75967021 | None:intergenic |
| GAAAAGGACTGAAATGATTG+AGG | 0.553231 | 8.4:-75966343 | None:intergenic |
| GGATTATGATTACTAGGGAT+GGG | 0.558180 | 8.4:-75967333 | None:intergenic |
| AAGAGAACACACCAATCTTG+TGG | 0.562304 | 8.4:+75966119 | MS.gene36579:CDS |
| ACTATCAGTTTCACCTGAGG+AGG | 0.566828 | 8.4:-75966575 | None:intergenic |
| GTCAGTGCTACAGATGGTAC+CGG | 0.569310 | 8.4:+75966676 | MS.gene36579:CDS |
| AATTCTTCACCTGTTGAAGG+TGG | 0.574829 | 8.4:+75966808 | MS.gene36579:CDS |
| AGTACTCAACAATTTGAAGA+AGG | 0.576847 | 8.4:+75966142 | MS.gene36579:CDS |
| TACTAGGGATGGGAAAAGAA+GGG | 0.586236 | 8.4:-75967323 | None:intergenic |
| TGTTGCTGCAAGACATAGAA+GGG | 0.587506 | 8.4:+75967107 | MS.gene36579:CDS |
| CACTGCTTCAATGCTTGATG+AGG | 0.590511 | 8.4:+75967191 | MS.gene36579:CDS |
| TCATGTCAACCCTGTGAGTG+AGG | 0.610783 | 8.4:-75967354 | None:intergenic |
| TAGAACATCATATCCATGGA+TGG | 0.614303 | 8.4:+75966070 | None:intergenic |
| TGGATGGATGTATTGATCCG+AGG | 0.618195 | 8.4:-75966755 | None:intergenic |
| AATCATAATCCTCACTCACA+GGG | 0.622444 | 8.4:+75967345 | MS.gene36579:CDS |
| ATGGATGGTCTAAATTGGGA+TGG | 0.624739 | 8.4:+75966085 | MS.gene36579:CDS |
| AGTGAGGATTATGATTACTA+GGG | 0.626305 | 8.4:-75967338 | None:intergenic |
| AGAATTGTCAGTGCTACAGA+TGG | 0.636327 | 8.4:+75966670 | MS.gene36579:CDS |
| AAATTGATATTAGTTGAACA+AGG | 0.637098 | 8.4:-75966889 | None:intergenic |
| CATTATGCCAGATTTCAACA+TGG | 0.655208 | 8.4:+75966384 | MS.gene36579:CDS |
| ATTACTATCAGTTTCACCTG+AGG | 0.681052 | 8.4:-75966578 | None:intergenic |
| TTGCAAAAGATTGTACCTGG+TGG | 0.687101 | 8.4:+75967156 | MS.gene36579:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTATCTAAAGTTTTTA+AGG | + | chr8.4:75967217-75967236 | MS.gene36579:CDS | 15.0% |
| !! | AAAGAATAAGTGAAAGAATT+AGG | + | chr8.4:75967130-75967149 | MS.gene36579:CDS | 20.0% |
| !! | AAATTGATATTAGTTGAACA+AGG | - | chr8.4:75966892-75966911 | None:intergenic | 20.0% |
| !! | AAGAATAAGTGAAAGAATTA+GGG | + | chr8.4:75967131-75967150 | MS.gene36579:CDS | 20.0% |
| ! | AAAAAACCAAGATGTGATAA+GGG | + | chr8.4:75966865-75966884 | MS.gene36579:CDS | 25.0% |
| ! | TAATTGAAAAAAAGCCTAAG+AGG | + | chr8.4:75967052-75967071 | MS.gene36579:CDS | 25.0% |
| !! | TCTGTTGAAAATGATAATGA+TGG | + | chr8.4:75966487-75966506 | MS.gene36579:CDS | 25.0% |
| !! | TGAAATGATTGAGGTATTAA+AGG | - | chr8.4:75966337-75966356 | None:intergenic | 25.0% |
| AAAGAGAAAGCAATACTAGT+TGG | - | chr8.4:75967300-75967319 | None:intergenic | 30.0% | |
| AAATCTGGCATAATGTTGTA+AGG | - | chr8.4:75966379-75966398 | None:intergenic | 30.0% | |
| AGGTAACAAAGTTAATGCTA+TGG | + | chr8.4:75967266-75967285 | MS.gene36579:CDS | 30.0% | |
| AGTACTCAACAATTTGAAGA+AGG | + | chr8.4:75966142-75966161 | MS.gene36579:CDS | 30.0% | |
| AGTGAGGATTATGATTACTA+GGG | - | chr8.4:75967341-75967360 | None:intergenic | 30.0% | |
| ATCTTAACATTCTTCCTCTT+AGG | - | chr8.4:75967069-75967088 | None:intergenic | 30.0% | |
| ATGAAAGTGAAATCAAAAGC+TGG | + | chr8.4:75966292-75966311 | MS.gene36579:CDS | 30.0% | |
| CAAAAAACCAAGATGTGATA+AGG | + | chr8.4:75966864-75966883 | MS.gene36579:CDS | 30.0% | |
| GAGATGCATAAAGTTCAAAT+TGG | + | chr8.4:75966202-75966221 | MS.gene36579:CDS | 30.0% | |
| GTTTCATCAAATTCATTGAG+TGG | - | chr8.4:75966721-75966740 | None:intergenic | 30.0% | |
| TGTTGTGAAAGATTTGTGTT+TGG | - | chr8.4:75966259-75966278 | None:intergenic | 30.0% | |
| TTTCTGACTGCAAAAACTTA+TGG | + | chr8.4:75966524-75966543 | MS.gene36579:CDS | 30.0% | |
| !! | ACACTGAATGTTTTTGTTTC+CGG | - | chr8.4:75966698-75966717 | None:intergenic | 30.0% |
| !! | AGTTGTTGAGTTTTTGTTGT+TGG | - | chr8.4:75966414-75966433 | None:intergenic | 30.0% |
| !! | ATTGTATTGCTTTTCTTGGA+TGG | - | chr8.4:75966774-75966793 | None:intergenic | 30.0% |
| !! | CAACACATTGATGATGAATT+TGG | - | chr8.4:75966922-75966941 | None:intergenic | 30.0% |
| !! | CTTGATTGTATTGCTTTTCT+TGG | - | chr8.4:75966778-75966797 | None:intergenic | 30.0% |
| !! | TCTTTTGATTGTTTGCTTTC+AGG | + | chr8.4:75966442-75966461 | MS.gene36579:CDS | 30.0% |
| !!! | CATCTTGGTTTTTTGCATTT+TGG | - | chr8.4:75966859-75966878 | None:intergenic | 30.0% |
| !!! | TCTAAAGTTTTTAAGGTCAC+AGG | + | chr8.4:75967224-75967243 | MS.gene36579:CDS | 30.0% |
| AACAATCTCTCAAAGTTCCT+CGG | + | chr8.4:75966738-75966757 | MS.gene36579:CDS | 35.0% | |
| AATCATAATCCTCACTCACA+GGG | + | chr8.4:75967345-75967364 | MS.gene36579:CDS | 35.0% | |
| AGAAGCAATAGCACAAATGA+AGG | + | chr8.4:75966969-75966988 | MS.gene36579:CDS | 35.0% | |
| AGGATTATGATTACTAGGGA+TGG | - | chr8.4:75967337-75967356 | None:intergenic | 35.0% | |
| ATTACTATCAGTTTCACCTG+AGG | - | chr8.4:75966581-75966600 | None:intergenic | 35.0% | |
| CATAATTCTTCACCTGTTGA+AGG | + | chr8.4:75966805-75966824 | MS.gene36579:CDS | 35.0% | |
| CATTATGCCAGATTTCAACA+TGG | + | chr8.4:75966384-75966403 | MS.gene36579:CDS | 35.0% | |
| GAAAAGGACTGAAATGATTG+AGG | - | chr8.4:75966346-75966365 | None:intergenic | 35.0% | |
| GAGTGAGGATTATGATTACT+AGG | - | chr8.4:75967342-75967361 | None:intergenic | 35.0% | |
| GGATTATGATTACTAGGGAT+GGG | - | chr8.4:75967336-75967355 | None:intergenic | 35.0% | |
| TAATCATAATCCTCACTCAC+AGG | + | chr8.4:75967344-75967363 | MS.gene36579:CDS | 35.0% | |
| TCATCCATTCCAAAATTCAC+TGG | - | chr8.4:75967024-75967043 | None:intergenic | 35.0% | |
| ! | GCATTTAGACCAGTGAATTT+TGG | + | chr8.4:75967012-75967031 | MS.gene36579:CDS | 35.0% |
| ! | GTTAAGGCACTTGAAAGTTT+AGG | + | chr8.4:75967246-75967265 | MS.gene36579:CDS | 35.0% |
| ! | GTTTTGCAAAAGATTGTACC+TGG | + | chr8.4:75967153-75967172 | MS.gene36579:CDS | 35.0% |
| ! | TTCATTTGTGCTATTGCTTC+TGG | - | chr8.4:75966970-75966989 | None:intergenic | 35.0% |
| !! | TAGACCAGTGAATTTTGGAA+TGG | + | chr8.4:75967017-75967036 | MS.gene36579:CDS | 35.0% |
| !!! | CTTGGTTTTTTGCATTTTGG+TGG | - | chr8.4:75966856-75966875 | None:intergenic | 35.0% |
| !!! | GTTGAGTTTTTGTTGTTGGT+GGG | - | chr8.4:75966410-75966429 | None:intergenic | 35.0% |
| !!! | GTTTTTAAGGTCACAGGTTA+AGG | + | chr8.4:75967230-75967249 | MS.gene36579:CDS | 35.0% |
| !!! | TGTTGAGTTTTTGTTGTTGG+TGG | - | chr8.4:75966411-75966430 | None:intergenic | 35.0% |
| AAGAGAACACACCAATCTTG+TGG | + | chr8.4:75966119-75966138 | MS.gene36579:CDS | 40.0% | |
| AATTCTTCACCTGTTGAAGG+TGG | + | chr8.4:75966808-75966827 | MS.gene36579:CDS | 40.0% | |
| AGAATTGTCAGTGCTACAGA+TGG | + | chr8.4:75966670-75966689 | MS.gene36579:CDS | 40.0% | |
| ATGGATGGTCTAAATTGGGA+TGG | + | chr8.4:75966085-75966104 | MS.gene36579:CDS | 40.0% | |
| GTAAGGTCTACTGTCTGAAA+AGG | - | chr8.4:75966362-75966381 | None:intergenic | 40.0% | |
| TACTAGGGATGGGAAAAGAA+GGG | - | chr8.4:75967326-75967345 | None:intergenic | 40.0% | |
| TGTTGAGTACTCCACAAGAT+TGG | - | chr8.4:75966133-75966152 | None:intergenic | 40.0% | |
| TGTTGCTGCAAGACATAGAA+GGG | + | chr8.4:75967107-75967126 | MS.gene36579:CDS | 40.0% | |
| TTACTAGGGATGGGAAAAGA+AGG | - | chr8.4:75967327-75967346 | None:intergenic | 40.0% | |
| TTGCAAAAGATTGTACCTGG+TGG | + | chr8.4:75967156-75967175 | MS.gene36579:CDS | 40.0% | |
| ! | ATTCTGATTGAAGGTGTGTC+TGG | - | chr8.4:75966655-75966674 | None:intergenic | 40.0% |
| ! | GCACTGACAATTCTGATTGA+AGG | - | chr8.4:75966664-75966683 | None:intergenic | 40.0% |
| AATCAAAAGCTGGATCCAGC+TGG | + | chr8.4:75966302-75966321 | MS.gene36579:CDS | 45.0% | |
| ACTATCAGTTTCACCTGAGG+AGG | - | chr8.4:75966578-75966597 | None:intergenic | 45.0% | |
| CAAGGTCCCTTATCACATCT+TGG | - | chr8.4:75966874-75966893 | None:intergenic | 45.0% | |
| CACTGCTTCAATGCTTGATG+AGG | + | chr8.4:75967191-75967210 | MS.gene36579:CDS | 45.0% | |
| CTGTTGCTGCAAGACATAGA+AGG | + | chr8.4:75967106-75967125 | MS.gene36579:CDS | 45.0% | |
| TAAAGGTTCTTCTCTCCAGC+TGG | - | chr8.4:75966320-75966339 | None:intergenic | 45.0% | |
| TGTACCTGGTGGAAGCAAAA+TGG | + | chr8.4:75967167-75967186 | MS.gene36579:CDS | 45.0% | |
| TGTCTTGCAGCAACAGTTTG+TGG | - | chr8.4:75967102-75967121 | None:intergenic | 45.0% | |
| ! | AGTCTAAAGCCACCTTCAAC+AGG | - | chr8.4:75966820-75966839 | None:intergenic | 45.0% |
| ! | TGGATGGATGTATTGATCCG+AGG | - | chr8.4:75966758-75966777 | None:intergenic | 45.0% |
| AGTAACACAGCAACCTCCTC+AGG | + | chr8.4:75966562-75966581 | MS.gene36579:CDS | 50.0% | |
| GTCAGTGCTACAGATGGTAC+CGG | + | chr8.4:75966676-75966695 | MS.gene36579:CDS | 50.0% | |
| ! | GTGTCCATTTTGCTTCCACC+AGG | - | chr8.4:75967174-75967193 | None:intergenic | 50.0% |
| ! | TGGTGGGCCATGTTGAAATC+TGG | - | chr8.4:75966394-75966413 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 75966085 | 75967371 | 75966085 | ID=MS.gene36579 |
| chr8.4 | mRNA | 75966085 | 75967371 | 75966085 | ID=MS.gene36579.t1;Parent=MS.gene36579 |
| chr8.4 | exon | 75966085 | 75967371 | 75966085 | ID=MS.gene36579.t1.exon1;Parent=MS.gene36579.t1 |
| chr8.4 | CDS | 75966085 | 75967371 | 75966085 | ID=cds.MS.gene36579.t1;Parent=MS.gene36579.t1 |
| Gene Sequence |
| Protein sequence |
